CsGy1G026150 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy1G026150
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	Protein CUP-SHAPED COTYLEDON 3-like
Location	Gy14Chr1: 24835482 .. 24835981 (+)
RNA-Seq Expression	CsGy1G026150
Synteny	CsGy1G026150

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGGCCGAAAGTGATGACTCTGACAAGCAGCTAAGAAATTTCAGGCCTCGACGTAAACTTAAATACCATAAGGAACGAGACCATGTAGAGTCTTCACAAAGTGTTCGATGGATAGATCTTTCCTCTGTCCACCCTCGTAAAGATGCCTGCATAAAATCGTGCGGAAATGATGACTTTGACAAAGCAGTAAGAAATTTCAGCTCTCAACGTCAATCTAAATCCCATAAGGTTCTAGACCATATCAAAGCTTCACAAAATGTCCAGTCCAAGAAGGAAACTCAACTCCAAGTAGTGTCATCCCTTAGCAAGGTGAGAGAACAGAACAAAACGCTAAACATAGGAAAATTTCATATCTGTTTTTATTATTAAAAGCAACTTGAATGACTTTAATTCTTCCATGTTTACATCAAGCGTCGTTCAATTTTCAGGTTAAAGCAGTTCCAGAACGAATTAAAGTTGTCAAACCAGCTGCAACTTCAAATAAAGATACTAAGTGA

mRNA sequence

ATGAAGGCCGAAAGTGATGACTCTGACAAGCAGCTAAGAAATTTCAGGCCTCGACGTAAACTTAAATACCATAAGGAACGAGACCATGTAGAGTCTTCACAAAGTGTTCGATGGATAGATCTTTCCTCTGTCCACCCTCGTAAAGATGCCTGCATAAAATCGTGCGGAAATGATGACTTTGACAAAGCAGTAAGAAATTTCAGCTCTCAACGTCAATCTAAATCCCATAAGGTTCTAGACCATATCAAAGCTTCACAAAATGTCCAGTCCAAGAAGGAAACTCAACTCCAAGTAGTGTCATCCCTTAGCAAGGTTAAAGCAGTTCCAGAACGAATTAAAGTTGTCAAACCAGCTGCAACTTCAAATAAAGATACTAAGTGA

Coding sequence (CDS)

ATGAAGGCCGAAAGTGATGACTCTGACAAGCAGCTAAGAAATTTCAGGCCTCGACGTAAACTTAAATACCATAAGGAACGAGACCATGTAGAGTCTTCACAAAGTGTTCGATGGATAGATCTTTCCTCTGTCCACCCTCGTAAAGATGCCTGCATAAAATCGTGCGGAAATGATGACTTTGACAAAGCAGTAAGAAATTTCAGCTCTCAACGTCAATCTAAATCCCATAAGGTTCTAGACCATATCAAAGCTTCACAAAATGTCCAGTCCAAGAAGGAAACTCAACTCCAAGTAGTGTCATCCCTTAGCAAGGTTAAAGCAGTTCCAGAACGAATTAAAGTTGTCAAACCAGCTGCAACTTCAAATAAAGATACTAAGTGA

Protein sequence

MKAESDDSDKQLRNFRPRRKLKYHKERDHVESSQSVRWIDLSSVHPRKDACIKSCGNDDFDKAVRNFSSQRQSKSHKVLDHIKASQNVQSKKETQLQVVSSLSKVKAVPERIKVVKPAATSNKDTK*

Homology

[Close]

BLAST of CsGy1G026150 vs. NCBI nr
Match: KAE8653385.1 (hypothetical protein Csa_007462 [Cucumis sativus])

HSP 1 Score: 233 bits (595), Expect = 5.43e-77
Identity = 122/126 (96.83%), Postives = 123/126 (97.62%), Query Frame = 0


Query: 1   MKAESDDSDKQLRNFRPRRKLKYHKERDHVESSQSVRWIDLSSVHPRKDACIKSCGNDDF 60
           MKAESDDSDKQLRNFRPRRKLKYHKERDHVESSQSVR IDLSSVHPRKDACIKSCGNDDF
Sbjct: 1   MKAESDDSDKQLRNFRPRRKLKYHKERDHVESSQSVRSIDLSSVHPRKDACIKSCGNDDF 60

Query: 61  DKAVRNFSSQRQSKSHKVLDHIKASQNVQSKKETQLQVVSSLSKVKAVPERIKVVKPAAT 120
           D+AVRNFSSQRQ KSHKVLDHIKASQNVQSKKETQLQVVSSL KVKAVPERIKVVKPAAT
Sbjct: 61  DRAVRNFSSQRQPKSHKVLDHIKASQNVQSKKETQLQVVSSLGKVKAVPERIKVVKPAAT 120

Query: 121 SNKDTK 126
           SNKDTK
Sbjct: 121 SNKDTK 126

[Close]

BLAST of CsGy1G026150 vs. NCBI nr
Match: TYK10207.1 (protein CUP-SHAPED COTYLEDON 3-like [Cucumis melo var. makuwa])

HSP 1 Score: 159 bits (401), Expect = 3.31e-42
Identity = 89/125 (71.20%), Postives = 101/125 (80.80%), Query Frame = 0


Query: 5   SDDSDKQLRNFRPRRKLKYHKERDHVESSQSVRWIDLSSVHPRKDA----CIKSCGNDDF 64
           S D D+ +RNF  +R+ K HK  DHVESS++ R ID+SS   RKD     CI SCG+ D 
Sbjct: 601 STDFDRAVRNFSSQRQPKSHKVLDHVESSENGRSIDISSARHRKDVMSINCITSCGSADS 660

Query: 65  DKAVRNFSSQRQSKSHKVLDHIKASQNVQSKKETQLQVVSSLSKVKAVPERIKVVKPAAT 124
           D+AVRNFSSQRQ KSHKV DHIKASQNVQSKKETQLQ+VSSLSKVKAVPERI+VVKPAA+
Sbjct: 661 DRAVRNFSSQRQPKSHKVRDHIKASQNVQSKKETQLQLVSSLSKVKAVPERIEVVKPAAS 720

[Close]

BLAST of CsGy1G026150 vs. NCBI nr
Match: XP_016900940.1 (PREDICTED: uncharacterized protein LOC103492204 [Cucumis melo])

HSP 1 Score: 122 bits (305), Expect = 3.24e-32
Identity = 64/75 (85.33%), Postives = 69/75 (92.00%), Query Frame = 0


Query: 51  CIKSCGNDDFDKAVRNFSSQRQSKSHKVLDHIKASQNVQSKKETQLQVVSSLSKVKAVPE 110
           CI SCG+ D D+AVRNFS QRQ KSHKV DHIKASQNVQSKKETQLQ+VSSLSKVKAVPE
Sbjct: 5   CITSCGSADSDRAVRNFSPQRQPKSHKVRDHIKASQNVQSKKETQLQLVSSLSKVKAVPE 64

Query: 111 RIKVVKPAATSNKDT 125
           RI+VVKPAA+SNKDT
Sbjct: 65  RIEVVKPAASSNKDT 79

[Close]

BLAST of CsGy1G026150 vs. NCBI nr
Match: ARA91515.1 (NAC domain transcription factor II [Cucumis melo])

HSP 1 Score: 107 bits (268), Expect = 2.10e-24
Identity = 57/67 (85.07%), Postives = 63/67 (94.03%), Query Frame = 0


Query: 59  DFDKAVRNFSSQRQSKSHKVLDHIKASQNVQSKKETQLQVVSSLSKVKAVPERIKVVKPA 118
           D D+AV+NF+SQ Q KSHKV DHIKASQNVQSKKETQLQ+VSSLSKVKAVPERI+VVKPA
Sbjct: 340 DSDRAVKNFTSQHQPKSHKVRDHIKASQNVQSKKETQLQLVSSLSKVKAVPERIEVVKPA 399

Query: 119 ATSNKDT 125
           A+SNKDT
Sbjct: 400 ASSNKDT 406

[Close]

BLAST of CsGy1G026150 vs. NCBI nr
Match: ARA91514.1 (NAC domain transcription factor I [Cucumis melo])

HSP 1 Score: 101 bits (252), Expect = 2.98e-22
Identity = 53/92 (57.61%), Postives = 67/92 (72.83%), Query Frame = 0


Query: 33  SQSVRWIDLSSVHPRKDACIKSCGNDDFDKAVRNFSSQRQSKSHKVLDHIKASQNVQSKK 92
           ++S+  I  S   P     ++   +DD D+  RNFSSQ Q KSHK LDH+   QNVQSK+
Sbjct: 309 TKSIPMIKESRRSPLTSKILRLDHSDDSDRGTRNFSSQHQPKSHKALDHVDTPQNVQSKR 368

Query: 93  ETQLQVVSSLSKVKAVPERIKVVKPAATSNKD 124
           ETQ+QVVSSLSK +AVP+RIK+V+PAATSNKD
Sbjct: 369 ETQIQVVSSLSKAEAVPKRIKIVRPAATSNKD 400

[Close]

BLAST of CsGy1G026150 vs. ExPASy TrEMBL
Match: A0A0A0LW42 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G572360 PE=4 SV=1)

HSP 1 Score: 195 bits (495), Expect = 1.54e-61
Identity = 100/108 (92.59%), Postives = 104/108 (96.30%), Query Frame = 0


Query: 1   MKAESDDSDKQLRNFRPRRKLKYHKERDHVESSQSVRWIDLSSVHPRKDACIKSCGNDDF 60
           MKAESDDSDKQLRNFRPRRKLKYHKERDHVESSQSVR IDLSSVHPRKDACIKSCGNDDF
Sbjct: 1   MKAESDDSDKQLRNFRPRRKLKYHKERDHVESSQSVRSIDLSSVHPRKDACIKSCGNDDF 60

Query: 61  DKAVRNFSSQRQSKSHKVLDHIKASQNVQSKKETQLQVVSSLSKVKAV 108
           D+AVRNFSSQRQ KSHKVLDHIKASQNVQSKKETQLQVVSSL K +++
Sbjct: 61  DRAVRNFSSQRQPKSHKVLDHIKASQNVQSKKETQLQVVSSLGKRRSI 108

[Close]

BLAST of CsGy1G026150 vs. ExPASy TrEMBL
Match: A0A5D3CE10 (Protein CUP-SHAPED COTYLEDON 3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16G003530 PE=4 SV=1)

HSP 1 Score: 159 bits (401), Expect = 1.60e-42
Identity = 89/125 (71.20%), Postives = 101/125 (80.80%), Query Frame = 0


Query: 5   SDDSDKQLRNFRPRRKLKYHKERDHVESSQSVRWIDLSSVHPRKDA----CIKSCGNDDF 64
           S D D+ +RNF  +R+ K HK  DHVESS++ R ID+SS   RKD     CI SCG+ D 
Sbjct: 601 STDFDRAVRNFSSQRQPKSHKVLDHVESSENGRSIDISSARHRKDVMSINCITSCGSADS 660

Query: 65  DKAVRNFSSQRQSKSHKVLDHIKASQNVQSKKETQLQVVSSLSKVKAVPERIKVVKPAAT 124
           D+AVRNFSSQRQ KSHKV DHIKASQNVQSKKETQLQ+VSSLSKVKAVPERI+VVKPAA+
Sbjct: 661 DRAVRNFSSQRQPKSHKVRDHIKASQNVQSKKETQLQLVSSLSKVKAVPERIEVVKPAAS 720

[Close]

BLAST of CsGy1G026150 vs. ExPASy TrEMBL
Match: A0A1S4DYZ1 (uncharacterized protein LOC103492204 OS=Cucumis melo OX=3656 GN=LOC103492204 PE=4 SV=1)

HSP 1 Score: 122 bits (305), Expect = 1.57e-32
Identity = 64/75 (85.33%), Postives = 69/75 (92.00%), Query Frame = 0


Query: 51  CIKSCGNDDFDKAVRNFSSQRQSKSHKVLDHIKASQNVQSKKETQLQVVSSLSKVKAVPE 110
           CI SCG+ D D+AVRNFS QRQ KSHKV DHIKASQNVQSKKETQLQ+VSSLSKVKAVPE
Sbjct: 5   CITSCGSADSDRAVRNFSPQRQPKSHKVRDHIKASQNVQSKKETQLQLVSSLSKVKAVPE 64

Query: 111 RIKVVKPAATSNKDT 125
           RI+VVKPAA+SNKDT
Sbjct: 65  RIEVVKPAASSNKDT 79

[Close]

BLAST of CsGy1G026150 vs. ExPASy TrEMBL
Match: A0A678NU60 (NAC domain transcription factor II OS=Cucumis melo OX=3656 GN=MELO3C015355 PE=4 SV=1)

HSP 1 Score: 107 bits (268), Expect = 1.02e-24
Identity = 57/67 (85.07%), Postives = 63/67 (94.03%), Query Frame = 0


Query: 59  DFDKAVRNFSSQRQSKSHKVLDHIKASQNVQSKKETQLQVVSSLSKVKAVPERIKVVKPA 118
           D D+AV+NF+SQ Q KSHKV DHIKASQNVQSKKETQLQ+VSSLSKVKAVPERI+VVKPA
Sbjct: 340 DSDRAVKNFTSQHQPKSHKVRDHIKASQNVQSKKETQLQLVSSLSKVKAVPERIEVVKPA 399

Query: 119 ATSNKDT 125
           A+SNKDT
Sbjct: 400 ASSNKDT 406

[Close]

BLAST of CsGy1G026150 vs. ExPASy TrEMBL
Match: A0A678P124 (NAC domain transcription factor I OS=Cucumis melo OX=3656 GN=MELO3C015357 PE=4 SV=1)

HSP 1 Score: 101 bits (252), Expect = 1.44e-22
Identity = 53/92 (57.61%), Postives = 67/92 (72.83%), Query Frame = 0


Query: 33  SQSVRWIDLSSVHPRKDACIKSCGNDDFDKAVRNFSSQRQSKSHKVLDHIKASQNVQSKK 92
           ++S+  I  S   P     ++   +DD D+  RNFSSQ Q KSHK LDH+   QNVQSK+
Sbjct: 309 TKSIPMIKESRRSPLTSKILRLDHSDDSDRGTRNFSSQHQPKSHKALDHVDTPQNVQSKR 368

Query: 93  ETQLQVVSSLSKVKAVPERIKVVKPAATSNKD 124
           ETQ+QVVSSLSK +AVP+RIK+V+PAATSNKD
Sbjct: 369 ETQIQVVSSLSKAEAVPKRIKIVRPAATSNKD 400

The following BLAST results are available for this feature:

BLAST of CsGy1G026150 vs.


Match Name	E-value	Identity	Description

BLAST of CsGy1G026150 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8653385.1	5.43e-77	96.83	hypothetical protein Csa_007462 [Cucumis sativus]	[more]
TYK10207.1	3.31e-42	71.20	protein CUP-SHAPED COTYLEDON 3-like [Cucumis melo var. makuwa]	[more]
XP_016900940.1	3.24e-32	85.33	PREDICTED: uncharacterized protein LOC103492204 [Cucumis melo]	[more]
ARA91515.1	2.10e-24	85.07	NAC domain transcription factor II [Cucumis melo]	[more]
ARA91514.1	2.98e-22	57.61	NAC domain transcription factor I [Cucumis melo]	[more]

BLAST of CsGy1G026150 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LW42	1.54e-61	92.59	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G572360 PE=4 SV=1	[more]
A0A5D3CE10	1.60e-42	71.20	Protein CUP-SHAPED COTYLEDON 3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5...	[more]
A0A1S4DYZ1	1.57e-32	85.33	uncharacterized protein LOC103492204 OS=Cucumis melo OX=3656 GN=LOC103492204 PE=...	[more]
A0A678NU60	1.02e-24	85.07	NAC domain transcription factor II OS=Cucumis melo OX=3656 GN=MELO3C015355 PE=4 ...	[more]
A0A678P124	1.44e-22	57.61	NAC domain transcription factor I OS=Cucumis melo OX=3656 GN=MELO3C015357 PE=4 S...	[more]

BLAST of CsGy1G026150 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..29

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy1G026150.2	CsGy1G026150.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003677	DNA binding