CsGy1G025220 (gene) Cucumber (Gy14) v2.1

Overview
NameCsGy1G025220
Typegene
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
DescriptionUnknown protein
LocationGy14Chr1: 24177587 .. 24177973 (+)
RNA-Seq ExpressionCsGy1G025220
SyntenyCsGy1G025220
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATTCCCTCAACAACAAAGCTCAAATGATAAAAAGCCTCACACACAAATTCCAATTCCCCACATTATCATCAATCAAACAATCGACAACGACGAAGATGGAAGCGGTGCAACGACGACAGTACTTGGGAGCGGCGCGGGGACAGAGGATGAAGAGGATGGAGACGACATTGGAAACGATTAAAGAAATAAGATCTCCGAGAGAAAGAGTGGTTGAAGCAACAAAAATGTGGAAGAAATCAGTGAAGAAATGGTGGAAAAACAATGGAGAGAATAAGAGGAAAGGTGGTAGAGTTGCAAAATACAAATTATATGATTTGAATTCTTCAAAACTCAAGATTTCCATCAACAATGGCTTCAAATGGATGAAGAACAACAAATGTTGA

mRNA sequence

ATGGATTCCCTCAACAACAAAGCTCAAATGATAAAAAGCCTCACACACAAATTCCAATTCCCCACATTATCATCAATCAAACAATCGACAACGACGAAGATGGAAGCGGTGCAACGACGACAGTACTTGGGAGCGGCGCGGGGACAGAGGATGAAGAGGATGGAGACGACATTGGAAACGATTAAAGAAATAAGATCTCCGAGAGAAAGAGTGGTTGAAGCAACAAAAATGTGGAAGAAATCAGTGAAGAAATGGTGGAAAAACAATGGAGAGAATAAGAGGAAAGGTGGTAGAGTTGCAAAATACAAATTATATGATTTGAATTCTTCAAAACTCAAGATTTCCATCAACAATGGCTTCAAATGGATGAAGAACAACAAATGTTGA

Coding sequence (CDS)

ATGGATTCCCTCAACAACAAAGCTCAAATGATAAAAAGCCTCACACACAAATTCCAATTCCCCACATTATCATCAATCAAACAATCGACAACGACGAAGATGGAAGCGGTGCAACGACGACAGTACTTGGGAGCGGCGCGGGGACAGAGGATGAAGAGGATGGAGACGACATTGGAAACGATTAAAGAAATAAGATCTCCGAGAGAAAGAGTGGTTGAAGCAACAAAAATGTGGAAGAAATCAGTGAAGAAATGGTGGAAAAACAATGGAGAGAATAAGAGGAAAGGTGGTAGAGTTGCAAAATACAAATTATATGATTTGAATTCTTCAAAACTCAAGATTTCCATCAACAATGGCTTCAAATGGATGAAGAACAACAAATGTTGA

Protein sequence

MDSLNNKAQMIKSLTHKFQFPTLSSIKQSTTTKMEAVQRRQYLGAARGQRMKRMETTLETIKEIRSPRERVVEATKMWKKSVKKWWKNNGENKRKGGRVAKYKLYDLNSSKLKISINNGFKWMKNNKC*
Homology
BLAST of CsGy1G025220 vs. NCBI nr
Match: KGN66017.1 (hypothetical protein Csa_007529 [Cucumis sativus])

HSP 1 Score: 250 bits (638), Expect = 1.74e-83
Identity = 128/128 (100.00%), Postives = 128/128 (100.00%), Query Frame = 0

Query: 1   MDSLNNKAQMIKSLTHKFQFPTLSSIKQSTTTKMEAVQRRQYLGAARGQRMKRMETTLET 60
           MDSLNNKAQMIKSLTHKFQFPTLSSIKQSTTTKMEAVQRRQYLGAARGQRMKRMETTLET
Sbjct: 1   MDSLNNKAQMIKSLTHKFQFPTLSSIKQSTTTKMEAVQRRQYLGAARGQRMKRMETTLET 60

Query: 61  IKEIRSPRERVVEATKMWKKSVKKWWKNNGENKRKGGRVAKYKLYDLNSSKLKISINNGF 120
           IKEIRSPRERVVEATKMWKKSVKKWWKNNGENKRKGGRVAKYKLYDLNSSKLKISINNGF
Sbjct: 61  IKEIRSPRERVVEATKMWKKSVKKWWKNNGENKRKGGRVAKYKLYDLNSSKLKISINNGF 120

Query: 121 KWMKNNKC 128
           KWMKNNKC
Sbjct: 121 KWMKNNKC 128

BLAST of CsGy1G025220 vs. NCBI nr
Match: KAA0050944.1 (hypothetical protein E6C27_scaffold761G00710 [Cucumis melo var. makuwa] >TYK10291.1 hypothetical protein E5676_scaffold16G004420 [Cucumis melo var. makuwa])

HSP 1 Score: 128 bits (321), Expect = 1.40e-35
Identity = 71/94 (75.53%), Postives = 76/94 (80.85%), Query Frame = 0

Query: 34  MEAVQRRQYLGAARGQRMKRMETTLETIKEIRSPRERVVEATKMWKKSVKKWWKNNGENK 93
           MEA QR  + GA  GQR +RM  TLETIKE+RS RERVVE TKMWK+SVKKWW N   NK
Sbjct: 1   MEAAQR--WSGATSGQRPRRM-GTLETIKEVRSRRERVVETTKMWKESVKKWWNNGEMNK 60

Query: 94  RKGGRVAKYKLYDLNSSKLKISINNGFKWMKNNK 127
           RKGGRVAKYK Y LNSSKLK+SINNGFKWMK NK
Sbjct: 61  RKGGRVAKYKFYCLNSSKLKVSINNGFKWMKINK 91

BLAST of CsGy1G025220 vs. NCBI nr
Match: KAG6588612.1 (hypothetical protein SDJN03_17177, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 64.7 bits (156), Expect = 1.12e-10
Identity = 49/91 (53.85%), Postives = 59/91 (64.84%), Query Frame = 0

Query: 34  MEAVQRRQYLGAARGQRMKRMETTLETIKEIRSPRERVVEATKMWKKSVKKWWKNNGENK 93
           MEA +RR    AA G R      ++ETIKE RS ++RVVEA    KKSV+KWWK + E K
Sbjct: 1   MEAGRRRS--AAAAGGRSSGFVGSMETIKERRSGKQRVVEA----KKSVEKWWKGS-ETK 60

Query: 94  RKGGRVAKYKLYDLNSSKLKISINNGFKWMK 124
           RK  RVAKYK Y +   KLK SI  GF+W+K
Sbjct: 61  RKR-RVAKYKFYAV-EGKLKRSITKGFQWIK 82

BLAST of CsGy1G025220 vs. NCBI nr
Match: KAG6588594.1 (hypothetical protein SDJN03_17159, partial [Cucurbita argyrosperma subsp. sororia] >KAG7020542.1 hypothetical protein SDJN02_17228, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 64.7 bits (156), Expect = 1.15e-10
Identity = 49/91 (53.85%), Postives = 59/91 (64.84%), Query Frame = 0

Query: 34  MEAVQRRQYLGAARGQRMKRMETTLETIKEIRSPRERVVEATKMWKKSVKKWWKNNGENK 93
           MEA +RR    AA G R      ++ETIKE RS ++RVVEA    KKSV+KWWK + E K
Sbjct: 1   MEAGRRRSAAAAAGG-RSSGFVGSMETIKERRSGKQRVVEA----KKSVEKWWKGS-ETK 60

Query: 94  RKGGRVAKYKLYDLNSSKLKISINNGFKWMK 124
           RK  RVAKYK Y +   KLK SI  GF+W+K
Sbjct: 61  RKR-RVAKYKFYAV-EGKLKRSITKGFQWIK 83

BLAST of CsGy1G025220 vs. ExPASy TrEMBL
Match: A0A0A0LYX3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G561970 PE=4 SV=1)

HSP 1 Score: 250 bits (638), Expect = 8.43e-84
Identity = 128/128 (100.00%), Postives = 128/128 (100.00%), Query Frame = 0

Query: 1   MDSLNNKAQMIKSLTHKFQFPTLSSIKQSTTTKMEAVQRRQYLGAARGQRMKRMETTLET 60
           MDSLNNKAQMIKSLTHKFQFPTLSSIKQSTTTKMEAVQRRQYLGAARGQRMKRMETTLET
Sbjct: 1   MDSLNNKAQMIKSLTHKFQFPTLSSIKQSTTTKMEAVQRRQYLGAARGQRMKRMETTLET 60

Query: 61  IKEIRSPRERVVEATKMWKKSVKKWWKNNGENKRKGGRVAKYKLYDLNSSKLKISINNGF 120
           IKEIRSPRERVVEATKMWKKSVKKWWKNNGENKRKGGRVAKYKLYDLNSSKLKISINNGF
Sbjct: 61  IKEIRSPRERVVEATKMWKKSVKKWWKNNGENKRKGGRVAKYKLYDLNSSKLKISINNGF 120

Query: 121 KWMKNNKC 128
           KWMKNNKC
Sbjct: 121 KWMKNNKC 128

BLAST of CsGy1G025220 vs. ExPASy TrEMBL
Match: A0A5D3CEU1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16G004420 PE=4 SV=1)

HSP 1 Score: 128 bits (321), Expect = 6.80e-36
Identity = 71/94 (75.53%), Postives = 76/94 (80.85%), Query Frame = 0

Query: 34  MEAVQRRQYLGAARGQRMKRMETTLETIKEIRSPRERVVEATKMWKKSVKKWWKNNGENK 93
           MEA QR  + GA  GQR +RM  TLETIKE+RS RERVVE TKMWK+SVKKWW N   NK
Sbjct: 1   MEAAQR--WSGATSGQRPRRM-GTLETIKEVRSRRERVVETTKMWKESVKKWWNNGEMNK 60

Query: 94  RKGGRVAKYKLYDLNSSKLKISINNGFKWMKNNK 127
           RKGGRVAKYK Y LNSSKLK+SINNGFKWMK NK
Sbjct: 61  RKGGRVAKYKFYCLNSSKLKVSINNGFKWMKINK 91

BLAST of CsGy1G025220 vs. ExPASy TrEMBL
Match: A0A151TW82 (Uncharacterized protein OS=Cajanus cajan OX=3821 GN=KK1_010537 PE=4 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 5.67e-04
Identity = 27/48 (56.25%), Postives = 31/48 (64.58%), Query Frame = 0

Query: 81  SVKKWWKNNGENKRKGGRVAKYKLYDLNSSKLKISINNGFKWMKNNKC 128
           S + WW N+ ENKRK  RVAKYKLY     KLK S+  G +W KN KC
Sbjct: 60  SKRMWWWNDPENKRKR-RVAKYKLY-AKEGKLKHSVKKGLRWFKN-KC 104

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KGN66017.11.74e-83100.00hypothetical protein Csa_007529 [Cucumis sativus][more]
KAA0050944.11.40e-3575.53hypothetical protein E6C27_scaffold761G00710 [Cucumis melo var. makuwa] >TYK1029... [more]
KAG6588612.11.12e-1053.85hypothetical protein SDJN03_17177, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6588594.11.15e-1053.85hypothetical protein SDJN03_17159, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
A0A0A0LYX38.43e-84100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G561970 PE=4 SV=1[more]
A0A5D3CEU16.80e-3675.53Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A151TW825.67e-0456.25Uncharacterized protein OS=Cajanus cajan OX=3821 GN=KK1_010537 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR021899Protein of unknown function DUF3511PFAMPF12023DUF3511coord: 89..125
e-value: 3.3E-9
score: 36.4

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy1G025220.1CsGy1G025220.1mRNA