CsGy1G023940 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy1G023940
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	signal recognition particle 14 kDa protein
Location	Gy14Chr1: 22668513 .. 22672350 (+)
RNA-Seq Expression	CsGy1G023940
Synteny	CsGy1G023940

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTAATTTCCTGTTCTCTTCGTCTTACTCATGTCTTGATTGAATTCTTACGTATTTTCACGATACGCTCTCCTAATCTGCATTTTAATTATTCATCTTCATGTCAGAATTTAACCTAATCAACTGAGAGTTTTTGTGTCGGTGTTAGTTTTGATGATTCTTAGACAGCCAACTTGTTTTTACTTCCGTTTGGATATGTATTTACATGCCTTTTTTAGGATTTTGCTTGTTGATTATTGCAATTATGGGTCTATCTTTTAGTGTTCTGCATATGCATCAAATCCAAATTGCATGTTCTGCATTGCACCTTTTCTTCAGTTCCACCGCCACTTTTCGGTTGGGTGACGTCTACTTTTCAATGGGTTCTTTCTATTTTAGCGGATACAATCGAGCCTAGCAGTGTTTCTGATCTTAATTATAATATAATGTCTGATTGGTTACGTTATTGGGTCTTCATTGGCTGATAGTCTCGGTGTGAATTCAGTTCTGTTTAACGAAATTCAGTTCTCTCATTCAATTTTGACAAAAGGAATTTCTCGAATTTGCCAAGACCAGATTCTTCAATGGGAGTTAGGTTTGTAACAAACTTTCTTTCAATGTATTTAATCCTTAAGGGTGGAGAATAATAAAATAATATGTATCTAACGGCAGATGGTATTGGGTAAACTAAGATAGAAGGTTCAAGTGCTATGTCACATCATTTGGCCCCTTGAGCATTGCACTCGCCCTTGGGTTTATTTGGCCAATTCGTATTCTTATGTGGCGTGGTACTTTGATAAGTCTTCGAGTAGCTAAACTATATAAATGTCTAAATTGTTTGGTATTCAAATTGTATCCTATTGTTTGTTATAAGTTCCAATTGGGCTAGATGTACCACCCTGTAGTTCTCTGGGAATTGCTTGGTTCACCTGTGCTTGTTTGGAGTTCTGCATATTTTGCATTAGGCATAAAAAGTTTTTTCTTTTGACACTTCCTCATGCCCCTATTAATTTTCTCTGCCAATGGTCCAAGAGAAAGAATTTAGGATCTCTCTCACTAGAGGCTTTATATGTAGACTTAACTTTCCTGTTGTTGAATTTGAATCTGTATTGAGCTAAAGTCCTGGTGTTGGGGTGTTTCTTATTCCCATTGTAATGGCCTAATAGGTTCCCTTTTATTTAATACAAAGTAATAAAAGGAAACTCAAGAACACTTCAATAGAACCCTAACCCTCTGCCCTTCCTTTCTTTCACTATTTATAACCATCTACCTGTCTATATAACTATCTACCCTTAGCCCTATCTAAATCTAGGTATCTAACAGTTCCCCAATGTTTTCTTTGTAACTTTGTTTGATAAAATTATCTTTCATTGAATTGAAAAGCTATTGGGTTTGTTGATCACTAACCATACAAATTATTTCTTCAAACGGGAAGTGATCCCACTGTTTGTATACGCTCACCAAGGCATACAGTCATTGTCTTTTTGCTGCTACGTACTCCAACATTTTCTAGGCTTACTTAGCTTCTCTGCTCTCATTAGGCAAACCAAATTTAAAAGGTTTCCATTTCAGGGTTCCAAAACCTTGCTGCTGCATTTGACTTAAATGAAACCTGCCACTAGAGCTAACTTATTGCACATTTGGAAGGAAAGAAACAACAGAATTTTCAATGACAAGTATAGACCTTTTGTAAATTTTCTGATCTTACTGAGTAAAAAATGTGACACAAGTAAAGTGCCTTACAAATAGTACGTAGATGCACACAGATTTTTATAATTAGTCCACTTTTACGGTATAGTGTTATTTCTTTACAAGGAGACGTCACAAAGGCATCTCTGTGTCTCTAAACAAGTGGTGCCTGATAGTATTTCTTATGTTAATTCACCCATGTTATAGCTTGCTGTAGCATTATTGTCCTTTAACTGGTTAAGGTATTATAACCTTGACAAGAAATCAGAGGTTTGGATTCCCACTCCCACATATTCTTTACTCAAAAGAAGAAGACAAAAAGGAAAGAAAGGAAAACTAAACTATAGGGCAGAAAAGATCAACAACAATAAATTGAAATTACAGAACCATGACAATGCAACCTCCGAAAAAGATCATAAACAGAAAACGCTCAAATGAAGAACAGATTATGTATTTTCACTCCTTTTAATTCAAAATTAAGTAAATAACGGTGCTAAATTAATCACATTTCATAGGATTATTAGAGACTGTCTCTTACTTCCTGGCTAGATATTTTATGATTGATTTTTCTTTGATGAAAGTATCTGTTTTTTGTCAACTGCGGTAAAAGATGTCAGATTTTCAGTGTTACAATGTGAGTTTTGGCCCAAGATAGACTATTGGAATTGTGTATAGTTGCCTAAAATTCACTACATTGTGGAATGTTATTGCAACGTCCTGTTTCTACTTGGATGTAATGTGTGCAGACGACGATTGTGGTGCTTCCATGTCACTTTGAGGATTAGTGGAAGATTTCAAATTTATTGAAGATGTATGCATGTATACTATTTGAATCTGAAAAAAAAAAAAGCCTTTAGGATTTGCAGCATGTTGCTTAAAATGACTAGCACACCATCACTAATTAAATGGAAAAGTGACAACTACATATTATCTGCTAAAGAGCAATAGAAAAAACAGTAAGCATGGTTGCTATATCAAGTTTAGTCATTGTCTTGATGATGTTTGGACCAAAGTTGAATTGTCTTTACTTATGGAATTTATTTGTCTGAATAGCAAGATGTGCATAATAGCATTATTTGTTTCACTGATATTTGAACCATAATGAAAATCGCTTGAATTGTGGACTTTTTCCATCCAAATTCTGAGATGTAGGCATCATTAGCATTCTATGTTTCATTCAACAACAAAATATTGTGGCTTGATTATGACCTCGTTAAGTTCTTATTCTTTTGGTTTAGGTTCTACTGCAGCTAGACCCTTTTCTCAATGAACTTACCAGCATGTTTGAGCGTAGTACCGAGAAGGGTTCAGTGTGGGTTACTCTAAAGCGATGTATGTGCATATCAGTGTATTTTTAAAATTAATTTCATATATTTTTGTGGTAATTTTTAGGAGTCTGATTAGGTTCAAACTCTATTGTCTCTGATTGATGTAGCATCATTGAAGTCCAAGGTGCAGAGAAATAAAATGACCACTGCTGGTCAACCTATTGAGTATAGGTGCCTCATCCGTGCTACAGATGGGAAGAAGACAATTTCAACTTCCGTAAGTATTGACTCATCTTTTAAGCTTGTTTCCCCTTCCCTTTTCTATCTTTTCTGAATTGAAAACTTCGCATAAGAATTCAAGTTTTTGTAGTAAACTCTAAATTTACTCGGGCTGAAGCAAGTCTCACTGAATTGAAGAGTGCTGTGTTTATACATCGTTTCTTTTTACTCTATTTATGTTCTACTTTAATTTTGTATTACAACTCAATGCAACACAGGAGTGATGGTGAAGTAATATATGGATTCTACCCCCTTTTCATCGTCACTCACTGCTTTATGAATTAGTTTTTTCTTCTGCTTGAGCTTTGAATTATCTTTTACTCAGTTCATTGTTTTTAGCAAACAGAAGAACCAAACCCCTTTTGTAGGACTTCAATCAGCATATATCCCTTTCACATTCTTCAGATCTTATTATCTGTTTTAACTTTCTTGAATCTGAAACATTTGTAACAACTTCTGCTGAACTGGCTAGGTTGGTGCAAAAGATCATCTGAGATTTCAAGCTTCGTATTCAACCATTCTTAAAGCCCACATGACTGCTCTTAAAAAGAGAGAGAGAAAGGACAAGAAGAAGGCAGCAGAGGCCGAGAAGGGTCTGAAGAAAAAACCCAGGAAAGTATAA

mRNA sequence

ATGGTTCTACTGCAGCTAGACCCTTTTCTCAATGAACTTACCAGCATGTTTGAGCGTAGTACCGAGAAGGGTTCAGTGTGGGTTACTCTAAAGCGATCATCATTGAAGTCCAAGGTGCAGAGAAATAAAATGACCACTGCTGGTCAACCTATTGAGTATAGGTGCCTCATCCGTGCTACAGATGGGAAGAAGACAATTTCAACTTCCGTTGGTGCAAAAGATCATCTGAGATTTCAAGCTTCGTATTCAACCATTCTTAAAGCCCACATGACTGCTCTTAAAAAGAGAGAGAGAAAGGACAAGAAGAAGGCAGCAGAGGCCGAGAAGGGTCTGAAGAAAAAACCCAGGAAAGTATAA

Coding sequence (CDS)

ATGGTTCTACTGCAGCTAGACCCTTTTCTCAATGAACTTACCAGCATGTTTGAGCGTAGTACCGAGAAGGGTTCAGTGTGGGTTACTCTAAAGCGATCATCATTGAAGTCCAAGGTGCAGAGAAATAAAATGACCACTGCTGGTCAACCTATTGAGTATAGGTGCCTCATCCGTGCTACAGATGGGAAGAAGACAATTTCAACTTCCGTTGGTGCAAAAGATCATCTGAGATTTCAAGCTTCGTATTCAACCATTCTTAAAGCCCACATGACTGCTCTTAAAAAGAGAGAGAGAAAGGACAAGAAGAAGGCAGCAGAGGCCGAGAAGGGTCTGAAGAAAAAACCCAGGAAAGTATAA

Protein sequence

MVLLQLDPFLNELTSMFERSTEKGSVWVTLKRSSLKSKVQRNKMTTAGQPIEYRCLIRATDGKKTISTSVGAKDHLRFQASYSTILKAHMTALKKRERKDKKKAAEAEKGLKKKPRKV*

Homology

[Close]

BLAST of CsGy1G023940 vs. ExPASy Swiss-Prot
Match: O04421 (Signal recognition particle 14 kDa protein OS=Arabidopsis thaliana OX=3702 GN=SRP14 PE=2 SV=2)

HSP 1 Score: 181.4 bits (459), Expect = 5.9e-45
Identity = 93/109 (85.32%), Postives = 103/109 (94.50%), Query Frame = 0


Query: 1   MVLLQLDPFLNELTSMFERSTEKGSVWVTLKRSSLKSKVQRNKMTTAGQPIEYRCLIRAT 60
           MVLLQLDPFLNELTSMFE+S EKGSVWVTLKRSSLKSKVQ+ K+++ G+ IEYRCLIRAT
Sbjct: 1   MVLLQLDPFLNELTSMFEKSKEKGSVWVTLKRSSLKSKVQKRKLSSVGESIEYRCLIRAT 60

Query: 61  DGKKTISTSVGAKDHLRFQASYSTILKAHMTALKKRERKDKKKAAEAEK 110
           DGKKT+STSVGAKDH RFQASY+TILKAHMTALKKRERKD+KK+ EAEK
Sbjct: 61  DGKKTVSTSVGAKDHQRFQASYATILKAHMTALKKRERKDRKKSTEAEK 109

[Close]

BLAST of CsGy1G023940 vs. ExPASy Swiss-Prot
Match: O04433 (Signal recognition particle 14 kDa protein OS=Oryza sativa subsp. japonica OX=39947 GN=SRP14 PE=2 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 1.2e-37
Identity = 81/117 (69.23%), Postives = 100/117 (85.47%), Query Frame = 0


Query: 1   MVLLQLDPFLNELTSMFERSTEKGSVWVTLKRSSLKSKVQRNKMTTAGQPIEYRCLIRAT 60
           MV+LQ DPFL+ELTSM+ERSTEKGSVWVT+KRSS+K + +  KM   G+ +EYRCL+RAT
Sbjct: 1   MVVLQPDPFLSELTSMYERSTEKGSVWVTMKRSSMKCQARLKKMAAKGEAVEYRCLVRAT 60

Query: 61  DGKKTISTSVGAKDHLRFQASYSTILKAHMTALKKRERKDKKKAAEAEKGLKKKPRK 118
           DGKK I T++ AK++L+FQASY+T+LKAHM ALKKRERKDKKKAAE EK  +K P+K
Sbjct: 61  DGKKNICTALSAKEYLKFQASYATVLKAHMHALKKRERKDKKKAAEVEKIPEKAPKK 117

[Close]

BLAST of CsGy1G023940 vs. ExPASy Swiss-Prot
Match: P37108 (Signal recognition particle 14 kDa protein OS=Homo sapiens OX=9606 GN=SRP14 PE=1 SV=2)

HSP 1 Score: 90.5 bits (223), Expect = 1.4e-17
Identity = 50/108 (46.30%), Postives = 75/108 (69.44%), Query Frame = 0


Query: 1   MVLLQLDPFLNELTSMFERSTEKGSVWVTLKRSSLKSKVQRNKMTTAG-QPIEYRCLIRA 60
           MVLL+ + FL ELT +F++    GSV++TLK+   ++K    K T  G +P + +CL+RA
Sbjct: 1   MVLLESEQFLTELTRLFQKCRTSGSVYITLKKYDGRTKPIPKKGTVEGFEPADNKCLLRA 60

Query: 61  TDGKKTISTSVGAKDHLRFQASYSTILKAHMTALKKRERKDKKKAAEA 108
           TDGKK IST V +K+  +FQ +YS +L+A+M  LKKR++K+K K  +A
Sbjct: 61  TDGKKKISTVVSSKEVNKFQMAYSNLLRANMDGLKKRDKKNKTKKTKA 108

[Close]

BLAST of CsGy1G023940 vs. ExPASy Swiss-Prot
Match: Q4R5C7 (Signal recognition particle 14 kDa protein OS=Macaca fascicularis OX=9541 GN=SRP14 PE=2 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 1.4e-17
Identity = 50/108 (46.30%), Postives = 75/108 (69.44%), Query Frame = 0


Query: 1   MVLLQLDPFLNELTSMFERSTEKGSVWVTLKRSSLKSKVQRNKMTTAG-QPIEYRCLIRA 60
           MVLL+ + FL ELT +F++    GSV++TLK+   ++K    K T  G +P + +CL+RA
Sbjct: 1   MVLLESEQFLTELTRLFQKCRTSGSVYITLKKYDGRTKPIPKKGTVEGFEPADNKCLLRA 60

Query: 61  TDGKKTISTSVGAKDHLRFQASYSTILKAHMTALKKRERKDKKKAAEA 108
           TDGKK IST V +K+  +FQ +YS +L+A+M  LKKR++K+K K  +A
Sbjct: 61  TDGKKKISTVVSSKEVNKFQMAYSNLLRANMDGLKKRDKKNKTKKTKA 108

[Close]

BLAST of CsGy1G023940 vs. ExPASy Swiss-Prot
Match: Q5RBX7 (Signal recognition particle 14 kDa protein OS=Pongo abelii OX=9601 GN=SRP14 PE=2 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 1.4e-17
Identity = 50/108 (46.30%), Postives = 75/108 (69.44%), Query Frame = 0


Query: 1   MVLLQLDPFLNELTSMFERSTEKGSVWVTLKRSSLKSKVQRNKMTTAG-QPIEYRCLIRA 60
           MVLL+ + FL ELT +F++    GSV++TLK+   ++K    K T  G +P + +CL+RA
Sbjct: 1   MVLLESEQFLTELTRLFQKCRTSGSVYITLKKYDGRTKPIPKKGTVEGFEPADNKCLLRA 60

Query: 61  TDGKKTISTSVGAKDHLRFQASYSTILKAHMTALKKRERKDKKKAAEA 108
           TDGKK IST V +K+  +FQ +YS +L+A+M  LKKR++K+K K  +A
Sbjct: 61  TDGKKKISTVVSSKEVNKFQMAYSNLLRANMDGLKKRDKKNKTKKTKA 108

[Close]

BLAST of CsGy1G023940 vs. NCBI nr
Match: XP_004145229.1 (signal recognition particle 14 kDa protein [Cucumis sativus] >XP_008444601.1 PREDICTED: signal recognition particle 14 kDa protein [Cucumis melo] >XP_023001491.1 signal recognition particle 14 kDa protein-like isoform X1 [Cucurbita maxima] >XP_023001492.1 signal recognition particle 14 kDa protein-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 219 bits (559), Expect = 9.32e-72
Identity = 118/118 (100.00%), Postives = 118/118 (100.00%), Query Frame = 0


Query: 1   MVLLQLDPFLNELTSMFERSTEKGSVWVTLKRSSLKSKVQRNKMTTAGQPIEYRCLIRAT 60
           MVLLQLDPFLNELTSMFERSTEKGSVWVTLKRSSLKSKVQRNKMTTAGQPIEYRCLIRAT
Sbjct: 1   MVLLQLDPFLNELTSMFERSTEKGSVWVTLKRSSLKSKVQRNKMTTAGQPIEYRCLIRAT 60

Query: 61  DGKKTISTSVGAKDHLRFQASYSTILKAHMTALKKRERKDKKKAAEAEKGLKKKPRKV 118
           DGKKTISTSVGAKDHLRFQASYSTILKAHMTALKKRERKDKKKAAEAEKGLKKKPRKV
Sbjct: 61  DGKKTISTSVGAKDHLRFQASYSTILKAHMTALKKRERKDKKKAAEAEKGLKKKPRKV 118

[Close]

BLAST of CsGy1G023940 vs. NCBI nr
Match: KAG7019502.1 (Signal recognition particle 14 kDa protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 219 bits (559), Expect = 1.68e-71
Identity = 118/118 (100.00%), Postives = 118/118 (100.00%), Query Frame = 0


Query: 1   MVLLQLDPFLNELTSMFERSTEKGSVWVTLKRSSLKSKVQRNKMTTAGQPIEYRCLIRAT 60
           MVLLQLDPFLNELTSMFERSTEKGSVWVTLKRSSLKSKVQRNKMTTAGQPIEYRCLIRAT
Sbjct: 19  MVLLQLDPFLNELTSMFERSTEKGSVWVTLKRSSLKSKVQRNKMTTAGQPIEYRCLIRAT 78

Query: 61  DGKKTISTSVGAKDHLRFQASYSTILKAHMTALKKRERKDKKKAAEAEKGLKKKPRKV 118
           DGKKTISTSVGAKDHLRFQASYSTILKAHMTALKKRERKDKKKAAEAEKGLKKKPRKV
Sbjct: 79  DGKKTISTSVGAKDHLRFQASYSTILKAHMTALKKRERKDKKKAAEAEKGLKKKPRKV 136

[Close]

BLAST of CsGy1G023940 vs. NCBI nr
Match: XP_023519243.1 (signal recognition particle 14 kDa protein-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 218 bits (556), Expect = 2.67e-71
Identity = 117/118 (99.15%), Postives = 118/118 (100.00%), Query Frame = 0


Query: 1   MVLLQLDPFLNELTSMFERSTEKGSVWVTLKRSSLKSKVQRNKMTTAGQPIEYRCLIRAT 60
           MVLLQLDPFLNELTS+FERSTEKGSVWVTLKRSSLKSKVQRNKMTTAGQPIEYRCLIRAT
Sbjct: 1   MVLLQLDPFLNELTSLFERSTEKGSVWVTLKRSSLKSKVQRNKMTTAGQPIEYRCLIRAT 60

Query: 61  DGKKTISTSVGAKDHLRFQASYSTILKAHMTALKKRERKDKKKAAEAEKGLKKKPRKV 118
           DGKKTISTSVGAKDHLRFQASYSTILKAHMTALKKRERKDKKKAAEAEKGLKKKPRKV
Sbjct: 61  DGKKTISTSVGAKDHLRFQASYSTILKAHMTALKKRERKDKKKAAEAEKGLKKKPRKV 118

[Close]

BLAST of CsGy1G023940 vs. NCBI nr
Match: KAA0054008.1 (signal recognition particle 14 kDa protein [Cucumis melo var. makuwa] >TYK20693.1 signal recognition particle 14 kDa protein [Cucumis melo var. makuwa])

HSP 1 Score: 218 bits (555), Expect = 4.47e-71
Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 0


Query: 2   VLLQLDPFLNELTSMFERSTEKGSVWVTLKRSSLKSKVQRNKMTTAGQPIEYRCLIRATD 61
           VLLQLDPFLNELTSMFERSTEKGSVWVTLKRSSLKSKVQRNKMTTAGQPIEYRCLIRATD
Sbjct: 7   VLLQLDPFLNELTSMFERSTEKGSVWVTLKRSSLKSKVQRNKMTTAGQPIEYRCLIRATD 66

Query: 62  GKKTISTSVGAKDHLRFQASYSTILKAHMTALKKRERKDKKKAAEAEKGLKKKPRKV 118
           GKKTISTSVGAKDHLRFQASYSTILKAHMTALKKRERKDKKKAAEAEKGLKKKPRKV
Sbjct: 67  GKKTISTSVGAKDHLRFQASYSTILKAHMTALKKRERKDKKKAAEAEKGLKKKPRKV 123

[Close]

BLAST of CsGy1G023940 vs. NCBI nr
Match: XP_038893990.1 (signal recognition particle 14 kDa protein isoform X2 [Benincasa hispida])

HSP 1 Score: 218 bits (554), Expect = 5.39e-71
Identity = 117/118 (99.15%), Postives = 117/118 (99.15%), Query Frame = 0


Query: 1   MVLLQLDPFLNELTSMFERSTEKGSVWVTLKRSSLKSKVQRNKMTTAGQPIEYRCLIRAT 60
           MVLLQLDPFLNELTSMFERSTEKGSVWVTLKRSSLKSKVQRNKMTTAGQPIEYRCLIRAT
Sbjct: 1   MVLLQLDPFLNELTSMFERSTEKGSVWVTLKRSSLKSKVQRNKMTTAGQPIEYRCLIRAT 60

Query: 61  DGKKTISTSVGAKDHLRFQASYSTILKAHMTALKKRERKDKKKAAEAEKGLKKKPRKV 118
           DGKKTISTSVGAKDHLRFQASYSTILKAHMTALKKRERKDKKKA EAEKGLKKKPRKV
Sbjct: 61  DGKKTISTSVGAKDHLRFQASYSTILKAHMTALKKRERKDKKKAPEAEKGLKKKPRKV 118

[Close]

BLAST of CsGy1G023940 vs. ExPASy TrEMBL
Match: A0A6J1KGP7 (signal recognition particle 14 kDa protein-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111495612 PE=3 SV=1)

HSP 1 Score: 219 bits (559), Expect = 4.51e-72
Identity = 118/118 (100.00%), Postives = 118/118 (100.00%), Query Frame = 0


Query: 1   MVLLQLDPFLNELTSMFERSTEKGSVWVTLKRSSLKSKVQRNKMTTAGQPIEYRCLIRAT 60
           MVLLQLDPFLNELTSMFERSTEKGSVWVTLKRSSLKSKVQRNKMTTAGQPIEYRCLIRAT
Sbjct: 1   MVLLQLDPFLNELTSMFERSTEKGSVWVTLKRSSLKSKVQRNKMTTAGQPIEYRCLIRAT 60

Query: 61  DGKKTISTSVGAKDHLRFQASYSTILKAHMTALKKRERKDKKKAAEAEKGLKKKPRKV 118
           DGKKTISTSVGAKDHLRFQASYSTILKAHMTALKKRERKDKKKAAEAEKGLKKKPRKV
Sbjct: 61  DGKKTISTSVGAKDHLRFQASYSTILKAHMTALKKRERKDKKKAAEAEKGLKKKPRKV 118

[Close]

BLAST of CsGy1G023940 vs. ExPASy TrEMBL
Match: A0A0A0LYE0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G534730 PE=3 SV=1)

HSP 1 Score: 219 bits (559), Expect = 4.51e-72
Identity = 118/118 (100.00%), Postives = 118/118 (100.00%), Query Frame = 0


Query: 1   MVLLQLDPFLNELTSMFERSTEKGSVWVTLKRSSLKSKVQRNKMTTAGQPIEYRCLIRAT 60
           MVLLQLDPFLNELTSMFERSTEKGSVWVTLKRSSLKSKVQRNKMTTAGQPIEYRCLIRAT
Sbjct: 1   MVLLQLDPFLNELTSMFERSTEKGSVWVTLKRSSLKSKVQRNKMTTAGQPIEYRCLIRAT 60

Query: 61  DGKKTISTSVGAKDHLRFQASYSTILKAHMTALKKRERKDKKKAAEAEKGLKKKPRKV 118
           DGKKTISTSVGAKDHLRFQASYSTILKAHMTALKKRERKDKKKAAEAEKGLKKKPRKV
Sbjct: 61  DGKKTISTSVGAKDHLRFQASYSTILKAHMTALKKRERKDKKKAAEAEKGLKKKPRKV 118

[Close]

BLAST of CsGy1G023940 vs. ExPASy TrEMBL
Match: A0A1S3BBI8 (signal recognition particle 14 kDa protein OS=Cucumis melo OX=3656 GN=LOC103487869 PE=3 SV=1)

HSP 1 Score: 219 bits (559), Expect = 4.51e-72
Identity = 118/118 (100.00%), Postives = 118/118 (100.00%), Query Frame = 0


Query: 1   MVLLQLDPFLNELTSMFERSTEKGSVWVTLKRSSLKSKVQRNKMTTAGQPIEYRCLIRAT 60
           MVLLQLDPFLNELTSMFERSTEKGSVWVTLKRSSLKSKVQRNKMTTAGQPIEYRCLIRAT
Sbjct: 1   MVLLQLDPFLNELTSMFERSTEKGSVWVTLKRSSLKSKVQRNKMTTAGQPIEYRCLIRAT 60

Query: 61  DGKKTISTSVGAKDHLRFQASYSTILKAHMTALKKRERKDKKKAAEAEKGLKKKPRKV 118
           DGKKTISTSVGAKDHLRFQASYSTILKAHMTALKKRERKDKKKAAEAEKGLKKKPRKV
Sbjct: 61  DGKKTISTSVGAKDHLRFQASYSTILKAHMTALKKRERKDKKKAAEAEKGLKKKPRKV 118

[Close]

BLAST of CsGy1G023940 vs. ExPASy TrEMBL
Match: A0A5A7UG42 (Signal recognition particle 14 kDa protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold480G00850 PE=3 SV=1)

HSP 1 Score: 218 bits (555), Expect = 2.16e-71
Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 0


Query: 2   VLLQLDPFLNELTSMFERSTEKGSVWVTLKRSSLKSKVQRNKMTTAGQPIEYRCLIRATD 61
           VLLQLDPFLNELTSMFERSTEKGSVWVTLKRSSLKSKVQRNKMTTAGQPIEYRCLIRATD
Sbjct: 7   VLLQLDPFLNELTSMFERSTEKGSVWVTLKRSSLKSKVQRNKMTTAGQPIEYRCLIRATD 66

Query: 62  GKKTISTSVGAKDHLRFQASYSTILKAHMTALKKRERKDKKKAAEAEKGLKKKPRKV 118
           GKKTISTSVGAKDHLRFQASYSTILKAHMTALKKRERKDKKKAAEAEKGLKKKPRKV
Sbjct: 67  GKKTISTSVGAKDHLRFQASYSTILKAHMTALKKRERKDKKKAAEAEKGLKKKPRKV 123

[Close]

BLAST of CsGy1G023940 vs. ExPASy TrEMBL
Match: A0A6J1EG32 (signal recognition particle 14 kDa protein-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111434001 PE=3 SV=1)

HSP 1 Score: 218 bits (554), Expect = 2.61e-71
Identity = 117/118 (99.15%), Postives = 118/118 (100.00%), Query Frame = 0


Query: 1   MVLLQLDPFLNELTSMFERSTEKGSVWVTLKRSSLKSKVQRNKMTTAGQPIEYRCLIRAT 60
           MVLLQLDPFLNELTSMFERSTEKGSVWVTLKRSSLKSKVQRNKMTTAGQPIEYRCLIRAT
Sbjct: 1   MVLLQLDPFLNELTSMFERSTEKGSVWVTLKRSSLKSKVQRNKMTTAGQPIEYRCLIRAT 60

Query: 61  DGKKTISTSVGAKDHLRFQASYSTILKAHMTALKKRERKDKKKAAEAEKGLKKKPRKV 118
           +GKKTISTSVGAKDHLRFQASYSTILKAHMTALKKRERKDKKKAAEAEKGLKKKPRKV
Sbjct: 61  NGKKTISTSVGAKDHLRFQASYSTILKAHMTALKKRERKDKKKAAEAEKGLKKKPRKV 118

[Close]

BLAST of CsGy1G023940 vs. TAIR 10
Match: AT2G43640.1 (Signal recognition particle, SRP9/SRP14 subunit )

HSP 1 Score: 181.4 bits (459), Expect = 4.2e-46
Identity = 93/109 (85.32%), Postives = 103/109 (94.50%), Query Frame = 0


Query: 1   MVLLQLDPFLNELTSMFERSTEKGSVWVTLKRSSLKSKVQRNKMTTAGQPIEYRCLIRAT 60
           MVLLQLDPFLNELTSMFE+S EKGSVWVTLKRSSLKSKVQ+ K+++ G+ IEYRCLIRAT
Sbjct: 1   MVLLQLDPFLNELTSMFEKSKEKGSVWVTLKRSSLKSKVQKRKLSSVGESIEYRCLIRAT 60

Query: 61  DGKKTISTSVGAKDHLRFQASYSTILKAHMTALKKRERKDKKKAAEAEK 110
           DGKKT+STSVGAKDH RFQASY+TILKAHMTALKKRERKD+KK+ EAEK
Sbjct: 61  DGKKTVSTSVGAKDHQRFQASYATILKAHMTALKKRERKDRKKSTEAEK 109

[Close]

BLAST of CsGy1G023940 vs. TAIR 10
Match: AT2G43640.2 (Signal recognition particle, SRP9/SRP14 subunit )

HSP 1 Score: 181.4 bits (459), Expect = 4.2e-46
Identity = 93/109 (85.32%), Postives = 103/109 (94.50%), Query Frame = 0


Query: 1   MVLLQLDPFLNELTSMFERSTEKGSVWVTLKRSSLKSKVQRNKMTTAGQPIEYRCLIRAT 60
           MVLLQLDPFLNELTSMFE+S EKGSVWVTLKRSSLKSKVQ+ K+++ G+ IEYRCLIRAT
Sbjct: 1   MVLLQLDPFLNELTSMFEKSKEKGSVWVTLKRSSLKSKVQKRKLSSVGESIEYRCLIRAT 60

Query: 61  DGKKTISTSVGAKDHLRFQASYSTILKAHMTALKKRERKDKKKAAEAEK 110
           DGKKT+STSVGAKDH RFQASY+TILKAHMTALKKRERKD+KK+ EAEK
Sbjct: 61  DGKKTVSTSVGAKDHQRFQASYATILKAHMTALKKRERKDRKKSTEAEK 109

[Close]

BLAST of CsGy1G023940 vs. TAIR 10
Match: AT2G43640.3 (Signal recognition particle, SRP9/SRP14 subunit )

HSP 1 Score: 154.5 bits (389), Expect = 5.5e-38
Identity = 83/109 (76.15%), Postives = 94/109 (86.24%), Query Frame = 0


Query: 1   MVLLQLDPFLNELTSMFERSTEKGSVWVTLKRSSLKSKVQRNKMTTAGQPIEYRCLIRAT 60
           MVLLQLDPFLNELTSMFE+S EK         +SLKSKVQ+ K+++ G+ IEYRCLIRAT
Sbjct: 1   MVLLQLDPFLNELTSMFEKSKEK---------ASLKSKVQKRKLSSVGESIEYRCLIRAT 60

Query: 61  DGKKTISTSVGAKDHLRFQASYSTILKAHMTALKKRERKDKKKAAEAEK 110
           DGKKT+STSVGAKDH RFQASY+TILKAHMTALKKRERKD+KK+ EAEK
Sbjct: 61  DGKKTVSTSVGAKDHQRFQASYATILKAHMTALKKRERKDRKKSTEAEK 100

The following BLAST results are available for this feature:

BLAST of CsGy1G023940 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O04421	5.9e-45	85.32	Signal recognition particle 14 kDa protein OS=Arabidopsis thaliana OX=3702 GN=SR...	[more]
O04433	1.2e-37	69.23	Signal recognition particle 14 kDa protein OS=Oryza sativa subsp. japonica OX=39...	[more]
P37108	1.4e-17	46.30	Signal recognition particle 14 kDa protein OS=Homo sapiens OX=9606 GN=SRP14 PE=1...	[more]
Q4R5C7	1.4e-17	46.30	Signal recognition particle 14 kDa protein OS=Macaca fascicularis OX=9541 GN=SRP...	[more]
Q5RBX7	1.4e-17	46.30	Signal recognition particle 14 kDa protein OS=Pongo abelii OX=9601 GN=SRP14 PE=2...	[more]

BLAST of CsGy1G023940 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004145229.1	9.32e-72	100.00	signal recognition particle 14 kDa protein [Cucumis sativus] >XP_008444601.1 PRE...	[more]
KAG7019502.1	1.68e-71	100.00	Signal recognition particle 14 kDa protein, partial [Cucurbita argyrosperma subs...	[more]
XP_023519243.1	2.67e-71	99.15	signal recognition particle 14 kDa protein-like [Cucurbita pepo subsp. pepo]	[more]
KAA0054008.1	4.47e-71	100.00	signal recognition particle 14 kDa protein [Cucumis melo var. makuwa] >TYK20693....	[more]
XP_038893990.1	5.39e-71	99.15	signal recognition particle 14 kDa protein isoform X2 [Benincasa hispida]	[more]

BLAST of CsGy1G023940 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KGP7	4.51e-72	100.00	signal recognition particle 14 kDa protein-like isoform X1 OS=Cucurbita maxima O...	[more]
A0A0A0LYE0	4.51e-72	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G534730 PE=3 SV=1	[more]
A0A1S3BBI8	4.51e-72	100.00	signal recognition particle 14 kDa protein OS=Cucumis melo OX=3656 GN=LOC1034878...	[more]
A0A5A7UG42	2.16e-71	100.00	Signal recognition particle 14 kDa protein OS=Cucumis melo var. makuwa OX=119469...	[more]
A0A6J1EG32	2.61e-71	99.15	signal recognition particle 14 kDa protein-like isoform X1 OS=Cucurbita moschata...	[more]

BLAST of CsGy1G023940 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G43640.1	4.2e-46	85.32	Signal recognition particle, SRP9/SRP14 subunit	[more]
AT2G43640.2	4.2e-46	85.32	Signal recognition particle, SRP9/SRP14 subunit	[more]
AT2G43640.3	5.5e-38	76.15	Signal recognition particle, SRP9/SRP14 subunit	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003210	Signal recognition particle, SRP14 subunit	PFAM	PF02290	SRP14	coord: 4..93 e-value: 1.2E-22 score: 80.3
IPR003210	Signal recognition particle, SRP14 subunit	PANTHER	PTHR12013	SIGNAL RECOGNITION PARTICLE 14 KD PROTEIN	coord: 2..109
IPR009018	Signal recognition particle, SRP9/SRP14 subunit	GENE3D	3.30.720.10	Signal recognition particle alu RNA binding heterodimer, srp9/1	coord: 1..118 e-value: 2.8E-40 score: 140.0
IPR009018	Signal recognition particle, SRP9/SRP14 subunit	SUPERFAMILY	54762	Signal recognition particle alu RNA binding heterodimer, SRP9/14	coord: 1..96
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 93..118
None	No IPR available	PANTHER	PTHR12013:SF3	SUBFAMILY NOT NAMED	coord: 2..109

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy1G023940.1	CsGy1G023940.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007186	G protein-coupled receptor signaling pathway
biological_process	GO:0006614	SRP-dependent cotranslational protein targeting to membrane
cellular_component	GO:0005786	signal recognition particle, endoplasmic reticulum targeting
cellular_component	GO:0048500	signal recognition particle
molecular_function	GO:0008312	7S RNA binding
molecular_function	GO:0030942	endoplasmic reticulum signal peptide binding