CsGy1G023340 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy1G023340
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	nudC domain-containing protein 2
Location	Gy14Chr1: 22177880 .. 22180674 (+)
RNA-Seq Expression	CsGy1G023340
Synteny	CsGy1G023340

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTCAAGTAAAAGAAACCCAGTTGTCTAGAAGCTTCATTAGACCGGAACTTCTCGTTAGGAAAAAGGAAAAAGCTTCGGTGAAATTCGCGGGAAAGGGAAGCAGCAAACCCTAAAGGGATGGCAGAGAAATTGGCTCCAGAAAAGCGCCATAGTTTCCTTCACAACGGTTTGTTCTTCATCCTTATCTATTTGATCTTCTAAATTTTCAATTTCAATGAATGAATTCATTGTTGTACGAGTTTTCTGATCTCTATACTTGTTTGCACGTGGTTTTTCAGGTCAGGAAGTGTTTGAATGGGATCAGACACTGGAGGAGGTTAACATTTATATTAATTTGCCTCCAAATGTTAATTCCAAGCAATTCTACTGCAAGATTCAATCTAGGCATGTCGAGCTTGGCATCAAGGGGAATCCTCCTTATCTCAATGTCGGTATCATTGGCATTTTTATAGATTTAATTTTGAAATTTCGATATACTGCTTGGTTTATGACTGTACCAATTTGTTTCAATCATTCAATTTCAGCACGAGCTTACTTGCCCTGTGAAGACGGATTCTTCTTTCTGGACCTTAGGTGATTGCAAATTCTTGCTTTAATCACTAAAATGGAATTTTGGATACCAAGTAAATTTCATGGGACTGAATTCAGCTGGAGGCTTCAGGAATTTTGTTATTTAACAGCTTTTGTTTATTTGGTGTGGCAGAGGATGATATAATGCACATTACACTGCAGAAGAGGGACAAGGGTCAGACATGGGCTTCCCCAATACAGGGTCAGGGTCAACTTGATCCTTACTCCTCTGATCTTGAGCAGAAGCGTCTTATGCTCCAGAGGTTTCAAGAGGAGGTCAGATTTTTTTTTTTTTTTGGGTACTCTTTGTTTCTTTTCTGGAGCATTTTTATCATTTTTATTTAGAGATCAATTGTTTCAAGTTATCCAAATCGATTATTTATGGGAGATTCCTTGCTCAAGCTAATTGAGTAATAGTTATTGAGATGTTGTGATTACTACTTGTTGTTGGCATCTGAAACGAGGTTAATGTGCCTTGTAAAAAATAAAGGCTATCGTGTCTGGAAAATCATGACAAAGAGAGAGTTTGTGGTCTATTTCATCTCTTTCGAGGCATTTTTTCAAAAGTTAATTAGGTGCAACTGGTAGGAAAGAACCCCAACTCAATAGGCCAACTCATTGCCCAAGTGATATCCCTACAGTATCATCTCTCATTTAGAAAAAAAAAATCTTGATTCAAGACACTACCATGTTTTTCTAGATAAGCAAGACTCTACAGAAAGAATCTTAAATTAACATATATTAATATGTTGAAAAAGATATGGCACTCCCATGAGTTCATGCCATAATGGGAGTGCCATCATGATGGCATGAACTTGTGACAAGCTCTTGCACCAACTGATGTAGGATGGATGAGACAATGTTTCAAAAGTGATAGTTGATACAAGAGAGCTCTACGATTCATATAATGTCATAAAAGTTAGTTCATTAATTATGGATGAGGTGTTGTAGGATTCTTGCTACTTATTAAAATTTGATTTTTTACTGGTTTTATATATCCCACAAGTGGGCAGCGTGTTTTTATGTCTTTTTTTGGCTTACTGTTGAAAAGTAATGATATTTTAGAAATACACGAATGGGTTTCTTTTAATTTCAGAAGTCCTGATTTAAGTTCAGTTAAGTAATAAAACCTTGAAATTTAACCTGCACTAATTATTTCTCTGCAGAACCCTGGATTTGACTTTTCACAAGCTCAGTTTTCAGGCAACTGTCCTGATCCAAGGACCTTCATGGGGGGAATTCGCTAAGTTTGACAAATTTAGTGTGGCATTTATAACTTGCATGGACGTGACATTCGGTAAATAATGTAGTTTTTGTACTGGTCTTGATTTATGCAAATCCTGTAATGACCACGATTGTGAGAAGGATATGTACTGAGTCCATTCTCTGTATTGAAGTGAAAATATTTAGGTGATATAAATTTAACTACCAACATTCTGTCTTTTAGCCTTCTCTTTGGTTTGATATAAACAAGAGTTCCAAATTTGATAGCAGGTGCTAGTTCATGGTAAAAATAGGTACCGAATCATCATTCTCCATATATTTGTTTACCCAAATCTCATTCCCAGTAAAATAGAGAAGGGGCCTCTTTAGTTTAAGTTCTCCCTGGCCAACCAAATTATGATGAGATGCTGTTTAGATTTTTAGTTCGTGTGTAACAGCTCATATTGAATGCATTTTGCTGCTGGGGCCTATTTTGTTGCACTTGTCATTGGCTGCCATTTCCTTTTCTTTTAGTAAAATAAATGAAGGGTTTTCTTTTGCTGGTTCCTTTAATCCTTTGAGCAATAGAAATTAAAGCGTGGGAATTAGAAAATGGAATTGCTGTGGTGATGGTTGAGAATGCAGTTGTTGGAATCTCATTCAAAAGTGGTGAAATGAGTTTGAGGTGGTATTAGATTCCTAACCATAACATTGTATCGTTGCCATCCATTGATATTCTCTGCCTTTTTTTGCCTTGTGTTTTCAGATTCCTACCTCTCAAAGGATGGATTATTACTGTCAGGTAAGCTATTTCTAATACCTTTCTCTTTGGAATTTAGTCGTGATAGTGTATAATCTAGAAATTTAGATACCATATGGAAACTAATTTGGAAAATTTGAAATTTAGAGATCAAATGATAACTTAAGCCAAAACATAGTGGGTAAAAAAGAGAACGTTTTGAAACTTATTGACCGAATGAAAATTCTACTCAAAACTTAAAAGAACACAATTGTTTTGTAC

mRNA sequence

GTTCAAGTAAAAGAAACCCAGTTGTCTAGAAGCTTCATTAGACCGGAACTTCTCGTTAGGAAAAAGGAAAAAGCTTCGGTGAAATTCGCGGGAAAGGGAAGCAGCAAACCCTAAAGGGATGGCAGAGAAATTGGCTCCAGAAAAGCGCCATAGTTTCCTTCACAACGGTCAGGAAGTGTTTGAATGGGATCAGACACTGGAGGAGGTTAACATTTATATTAATTTGCCTCCAAATGTTAATTCCAAGCAATTCTACTGCAAGATTCAATCTAGGCATGTCGAGCTTGGCATCAAGGGGAATCCTCCTTATCTCAATCACGAGCTTACTTGCCCTGTGAAGACGGATTCTTCTTTCTGGACCTTAGAGGATGATATAATGCACATTACACTGCAGAAGAGGGACAAGGGTCAGACATGGGCTTCCCCAATACAGGGTCAGGGTCAACTTGATCCTTACTCCTCTGATCTTGAGCAGAAGCGTCTTATGCTCCAGAGGTTTCAAGAGGAGAACCCTGGATTTGACTTTTCACAAGCTCAGTTTTCAGGCAACTGTCCTGATCCAAGGACCTTCATGGGGGGAATTCGCTAAGTTTGACAAATTTAGTGTGGCATTTATAACTTGCATGGACGTGACATTCGGTAAATAATGTAGTTTTTGTACTGGTCTTGATTTATGCAAATCCTGTAATGACCACGATTGTGAGAAGGATATGTACTGAGTCCATTCTCTGTATTGAAGTGAAAATATTTAGGTGATATAAATTTAACTACCAACATTCTGTCTTTTAGCCTTCTCTTTGGTTTGATATAAACAAGAGTTCCAAATTTGATAGCAGGTGCTAGTTCATGGTAAAAATAGGTACCGAATCATCATTCTCCATATATTTGTTTACCCAAATCTCATTCCCAGTAAAATAGAGAAGGGGCCTCTTTAGTTTAAGTTCTCCCTGGCCAACCAAATTATGATGAGATGCTGTTTAGATTTTTAGTTCGTGTGTAACAGCTCATATTGAATGCATTTTGCTGCTGGGGCCTATTTTGTTGCACTTGTCATTGGCTGCCATTTCCTTTTCTTTTAGTAAAATAAATGAAGGGTTTTCTTTTGCTGGTTCCTTTAATCCTTTGAGCAATAGAAATTAAAGCGTGGGAATTAGAAAATGGAATTGCTGTGGTGATGGTTGAGAATGCAGTTGTTGGAATCTCATTCAAAAGTGGTGAAATGAGTTTGAGGTGGTATTAGATTCCTAACCATAACATTGTATCGTTGCCATCCATTGATATTCTCTGCCTTTTTTTGCCTTGTGTTTTCAGATTCCTACCTCTCAAAGGATGGATTATTACTGTCAGGTAAGCTATTTCTAATACCTTTCTCTTTGGAATTTAGTCGTGATAGTGTATAATCTAGAAATTTAGATACCATATGGAAACTAATTTGGAAAATTTGAAATTTAGAGATCAAATGATAACTTAAGCCAAAACATAGTGGGTAAAAAAGAGAACGTTTTGAAACTTATTGACCGAATGAAAATTCTACTCAAAACTTAAAAGAACACAATTGTTTTGTAC

Coding sequence (CDS)

ATGGCAGAGAAATTGGCTCCAGAAAAGCGCCATAGTTTCCTTCACAACGGTCAGGAAGTGTTTGAATGGGATCAGACACTGGAGGAGGTTAACATTTATATTAATTTGCCTCCAAATGTTAATTCCAAGCAATTCTACTGCAAGATTCAATCTAGGCATGTCGAGCTTGGCATCAAGGGGAATCCTCCTTATCTCAATCACGAGCTTACTTGCCCTGTGAAGACGGATTCTTCTTTCTGGACCTTAGAGGATGATATAATGCACATTACACTGCAGAAGAGGGACAAGGGTCAGACATGGGCTTCCCCAATACAGGGTCAGGGTCAACTTGATCCTTACTCCTCTGATCTTGAGCAGAAGCGTCTTATGCTCCAGAGGTTTCAAGAGGAGAACCCTGGATTTGACTTTTCACAAGCTCAGTTTTCAGGCAACTGTCCTGATCCAAGGACCTTCATGGGGGGAATTCGCTAA

Protein sequence

MAEKLAPEKRHSFLHNGQEVFEWDQTLEEVNIYINLPPNVNSKQFYCKIQSRHVELGIKGNPPYLNHELTCPVKTDSSFWTLEDDIMHITLQKRDKGQTWASPIQGQGQLDPYSSDLEQKRLMLQRFQEENPGFDFSQAQFSGNCPDPRTFMGGIR*

Homology

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BLAST of CsGy1G023340 vs. ExPASy Swiss-Prot
Match: Q8WVJ2 (NudC domain-containing protein 2 OS=Homo sapiens OX=9606 GN=NUDCD2 PE=1 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 1.6e-21
Identity = 57/140 (40.71%), Postives = 77/140 (55.00%), Query Frame = 0


Query: 8   EKRHSFLHNGQEVFEWDQTLEEVNIYINLPPNVNSKQFYCKIQSRHVELGIKGNPPYLNH 67
           E+R   +  G    +W QTLEEV I + +PP   ++   C +QSRHV L + G    L  
Sbjct: 6   EERSGVVPCGTPWGQWYQTLEEVFIEVQVPPGTRAQDIQCGLQSRHVALSV-GGREILKG 65

Query: 68  ELTCPVKTDSSFWTLEDDIM---HITLQKRDKGQTWASPIQGQGQLDPYSSDLEQKRLML 127
           +L      D   WTLED  M    +T  KRD    W S ++ +   DP+  D  Q++L L
Sbjct: 66  KLFDSTIADEGTWTLEDRKMVRIVLTKTKRDAANCWTSLLESEYAADPWVQDQMQRKLTL 125

Query: 128 QRFQEENPGFDFSQAQFSGN 145
           +RFQ+ENPGFDFS A+ SGN
Sbjct: 126 ERFQKENPGFDFSGAEISGN 144

[Close]

BLAST of CsGy1G023340 vs. ExPASy Swiss-Prot
Match: Q9CQ48 (NudC domain-containing protein 2 OS=Mus musculus OX=10090 GN=Nudcd2 PE=1 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 1.6e-21
Identity = 57/140 (40.71%), Postives = 77/140 (55.00%), Query Frame = 0


Query: 8   EKRHSFLHNGQEVFEWDQTLEEVNIYINLPPNVNSKQFYCKIQSRHVELGIKGNPPYLNH 67
           E+R   +  G    +W QTLEEV I + +PP   ++   C +QSRHV L + G    L  
Sbjct: 6   EERSGVVPCGTPWGQWYQTLEEVFIEVQVPPGTRAQDIQCGLQSRHVALAV-GGREILKG 65

Query: 68  ELTCPVKTDSSFWTLEDDIM---HITLQKRDKGQTWASPIQGQGQLDPYSSDLEQKRLML 127
           +L      D   WTLED  M    +T  KRD    W S ++ +   DP+  D  Q++L L
Sbjct: 66  KLFDSTIADEGTWTLEDRKMVRIVLTKTKRDAANCWTSLLESEYAADPWVQDQMQRKLTL 125

Query: 128 QRFQEENPGFDFSQAQFSGN 145
           +RFQ+ENPGFDFS A+ SGN
Sbjct: 126 ERFQKENPGFDFSGAEISGN 144

[Close]

BLAST of CsGy1G023340 vs. ExPASy Swiss-Prot
Match: Q5M823 (NudC domain-containing protein 2 OS=Rattus norvegicus OX=10116 GN=Nudcd2 PE=2 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 3.5e-21
Identity = 54/126 (42.86%), Postives = 72/126 (57.14%), Query Frame = 0


Query: 22  EWDQTLEEVNIYINLPPNVNSKQFYCKIQSRHVELGIKGNPPYLNHELTCPVKTDSSFWT 81
           +W QTLEEV I + +PP   ++   C +QSRHV L + G    L  +L      D   WT
Sbjct: 20  QWYQTLEEVFIEVQVPPGTRAQDIQCGLQSRHVALAV-GGREILKGKLFDSTIADEGTWT 79

Query: 82  LEDDIM---HITLQKRDKGQTWASPIQGQGQLDPYSSDLEQKRLMLQRFQEENPGFDFSQ 141
           LED  M    +T  KRD    W S ++ +   DP+  D  Q++L L+RFQ+ENPGFDFS 
Sbjct: 80  LEDRKMVRIVLTKTKRDAANCWTSLLESEYAADPWVQDQMQRKLTLERFQKENPGFDFSG 139

Query: 142 AQFSGN 145
           A+ SGN
Sbjct: 140 AEISGN 144

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BLAST of CsGy1G023340 vs. ExPASy Swiss-Prot
Match: Q9STN7 (Protein BOBBER 2 OS=Arabidopsis thaliana OX=3702 GN=BOB2 PE=2 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 9.3e-14
Identity = 46/160 (28.75%), Postives = 76/160 (47.50%), Query Frame = 0


Query: 19  EVFEWDQTLEEVNIYINLPPNVNSKQFYCKIQSRHVELGIKGNPPYLNHELTCPVKTDSS 78
           E + W Q L+EV I I +P    S+   C+I+   +++G+KG    ++ E    VK D  
Sbjct: 134 EKYSWGQNLQEVTINIPMPEGTKSRSVTCEIKKNRLKVGLKGQDLIVDGEFFNSVKPDDC 193

Query: 79  FWTLEDD-IMHITLQKRDKGQTWASPIQGQ---------------GQLDPYS-------- 138
           FW +ED  ++ + L K+D+ + W   ++G+               G LDP +        
Sbjct: 194 FWNIEDQKMISVLLTKQDQMEWWKYCVKGEPEIDTQKVEPETSKLGDLDPETRASVEKMM 253

Query: 139 ------------SDLEQKRLMLQRFQEENPGFDFSQAQFS 143
                       SD  +K+ ML++F  +NPG DFS A+F+
Sbjct: 254 FDQRQKQMGLPRSDEIEKKDMLKKFMAQNPGMDFSNAKFN 293

[Close]

BLAST of CsGy1G023340 vs. ExPASy Swiss-Prot
Match: Q9LV09 (Protein BOBBER 1 OS=Arabidopsis thaliana OX=3702 GN=BOB1 PE=1 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 1.0e-12
Identity = 44/160 (27.50%), Postives = 76/160 (47.50%), Query Frame = 0


Query: 19  EVFEWDQTLEEVNIYINLPPNVNSKQFYCKIQSRHVELGIKGNPPYLNHELTCPVKTDSS 78
           E + W Q L+EV + I +P    ++   C+I+   +++G+KG  P ++ EL   VK D  
Sbjct: 145 ENYSWIQNLQEVTVNIPVPTGTKARTVVCEIKKNRLKVGLKGQDPIVDGELYRSVKPDDC 204

Query: 79  FWTLEDD-IMHITLQKRDKGQTWASPIQGQ---------------GQLDPY--------- 138
           +W +ED  ++ I L K D+ + W   ++G+               G LDP          
Sbjct: 205 YWNIEDQKVISILLTKSDQMEWWKCCVKGEPEIDTQKVEPETSKLGDLDPETRSTVEKMM 264

Query: 139 -----------SSDLEQKRLMLQRFQEENPGFDFSQAQFS 143
                      +S+  QK+ +L++F  E+P  DFS A+F+
Sbjct: 265 FDQRQKQMGLPTSEELQKQEILKKFMSEHPEMDFSNAKFN 304

[Close]

BLAST of CsGy1G023340 vs. NCBI nr
Match: XP_004151457.1 (nudC domain-containing protein 2 [Cucumis sativus] >KGN65805.1 hypothetical protein Csa_023350 [Cucumis sativus])

HSP 1 Score: 333 bits (855), Expect = 1.14e-115
Identity = 156/156 (100.00%), Postives = 156/156 (100.00%), Query Frame = 0


Query: 1   MAEKLAPEKRHSFLHNGQEVFEWDQTLEEVNIYINLPPNVNSKQFYCKIQSRHVELGIKG 60
           MAEKLAPEKRHSFLHNGQEVFEWDQTLEEVNIYINLPPNVNSKQFYCKIQSRHVELGIKG
Sbjct: 1   MAEKLAPEKRHSFLHNGQEVFEWDQTLEEVNIYINLPPNVNSKQFYCKIQSRHVELGIKG 60

Query: 61  NPPYLNHELTCPVKTDSSFWTLEDDIMHITLQKRDKGQTWASPIQGQGQLDPYSSDLEQK 120
           NPPYLNHELTCPVKTDSSFWTLEDDIMHITLQKRDKGQTWASPIQGQGQLDPYSSDLEQK
Sbjct: 61  NPPYLNHELTCPVKTDSSFWTLEDDIMHITLQKRDKGQTWASPIQGQGQLDPYSSDLEQK 120

Query: 121 RLMLQRFQEENPGFDFSQAQFSGNCPDPRTFMGGIR 156
           RLMLQRFQEENPGFDFSQAQFSGNCPDPRTFMGGIR
Sbjct: 121 RLMLQRFQEENPGFDFSQAQFSGNCPDPRTFMGGIR 156

[Close]

BLAST of CsGy1G023340 vs. NCBI nr
Match: XP_008457374.1 (PREDICTED: nudC domain-containing protein 2 [Cucumis melo] >KAA0031818.1 nudC domain-containing protein 2 [Cucumis melo var. makuwa])

HSP 1 Score: 331 bits (848), Expect = 1.42e-114
Identity = 154/156 (98.72%), Postives = 156/156 (100.00%), Query Frame = 0


Query: 1   MAEKLAPEKRHSFLHNGQEVFEWDQTLEEVNIYINLPPNVNSKQFYCKIQSRHVELGIKG 60
           MAEKLAPEKRHSFLHNGQ+VFEWDQTLEEVNIYINLPPNVNSKQFYCKIQSRHVE+GIKG
Sbjct: 1   MAEKLAPEKRHSFLHNGQKVFEWDQTLEEVNIYINLPPNVNSKQFYCKIQSRHVEVGIKG 60

Query: 61  NPPYLNHELTCPVKTDSSFWTLEDDIMHITLQKRDKGQTWASPIQGQGQLDPYSSDLEQK 120
           NPPYLNHELTCPVKTDSSFWTLEDDIMHITLQKRDKGQTWASPIQGQGQLDPYSSDLEQK
Sbjct: 61  NPPYLNHELTCPVKTDSSFWTLEDDIMHITLQKRDKGQTWASPIQGQGQLDPYSSDLEQK 120

Query: 121 RLMLQRFQEENPGFDFSQAQFSGNCPDPRTFMGGIR 156
           RLMLQRFQEENPGFDFSQAQFSGNCPDPRTFMGGIR
Sbjct: 121 RLMLQRFQEENPGFDFSQAQFSGNCPDPRTFMGGIR 156

[Close]

BLAST of CsGy1G023340 vs. NCBI nr
Match: XP_038894388.1 (nudC domain-containing protein 2 [Benincasa hispida])

HSP 1 Score: 325 bits (833), Expect = 2.76e-112
Identity = 150/156 (96.15%), Postives = 156/156 (100.00%), Query Frame = 0


Query: 1   MAEKLAPEKRHSFLHNGQEVFEWDQTLEEVNIYINLPPNVNSKQFYCKIQSRHVELGIKG 60
           MAEKLAPEKRHSFLHNGQ+VFEWDQTLE+VNIYINLPPNV+SKQFYCKIQSRHVE+GIKG
Sbjct: 1   MAEKLAPEKRHSFLHNGQKVFEWDQTLEDVNIYINLPPNVHSKQFYCKIQSRHVEVGIKG 60

Query: 61  NPPYLNHELTCPVKTDSSFWTLEDDIMHITLQKRDKGQTWASPIQGQGQLDPYSSDLEQK 120
           NPP+LNHELTCPVKTDSSFWTLEDDIMHITLQKRDKGQTWASPIQGQGQLDPYS+DLEQK
Sbjct: 61  NPPFLNHELTCPVKTDSSFWTLEDDIMHITLQKRDKGQTWASPIQGQGQLDPYSTDLEQK 120

Query: 121 RLMLQRFQEENPGFDFSQAQFSGNCPDPRTFMGGIR 156
           RLMLQRFQEENPGFDFSQAQFSGNCPDPRTFMGGIR
Sbjct: 121 RLMLQRFQEENPGFDFSQAQFSGNCPDPRTFMGGIR 156

[Close]

BLAST of CsGy1G023340 vs. NCBI nr
Match: KAG6607306.1 (NudC domain-containing protein 2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 325 bits (832), Expect = 3.93e-112
Identity = 151/155 (97.42%), Postives = 154/155 (99.35%), Query Frame = 0


Query: 1   MAEKLAPEKRHSFLHNGQEVFEWDQTLEEVNIYINLPPNVNSKQFYCKIQSRHVELGIKG 60
           MAEKLAPEKRHSFLHNGQEVFEWDQTLEEVN+YINLPPNV+SKQFYCKIQSRHVELGIKG
Sbjct: 1   MAEKLAPEKRHSFLHNGQEVFEWDQTLEEVNMYINLPPNVHSKQFYCKIQSRHVELGIKG 60

Query: 61  NPPYLNHELTCPVKTDSSFWTLEDDIMHITLQKRDKGQTWASPIQGQGQLDPYSSDLEQK 120
           NPPYLNHELTCPVKTDSSFWTLED IMHITLQKRDKGQTWASPIQGQGQLDPYS+DLEQK
Sbjct: 61  NPPYLNHELTCPVKTDSSFWTLEDGIMHITLQKRDKGQTWASPIQGQGQLDPYSTDLEQK 120

Query: 121 RLMLQRFQEENPGFDFSQAQFSGNCPDPRTFMGGI 155
           RLMLQRFQEENPGFDFSQAQFSGNCPDPRTFMGGI
Sbjct: 121 RLMLQRFQEENPGFDFSQAQFSGNCPDPRTFMGGI 155

[Close]

BLAST of CsGy1G023340 vs. NCBI nr
Match: XP_023523271.1 (nudC domain-containing protein 2-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 324 bits (830), Expect = 7.93e-112
Identity = 151/155 (97.42%), Postives = 154/155 (99.35%), Query Frame = 0


Query: 1   MAEKLAPEKRHSFLHNGQEVFEWDQTLEEVNIYINLPPNVNSKQFYCKIQSRHVELGIKG 60
           MAEKLAPEKRHSFLHNGQEVFEWDQTLEEVNIYINLPPNV+SKQFYCKIQSRHVELGIKG
Sbjct: 1   MAEKLAPEKRHSFLHNGQEVFEWDQTLEEVNIYINLPPNVHSKQFYCKIQSRHVELGIKG 60

Query: 61  NPPYLNHELTCPVKTDSSFWTLEDDIMHITLQKRDKGQTWASPIQGQGQLDPYSSDLEQK 120
           NPPYL+HELTCPVKTDSSFWTLED IMHITLQKRDKGQTWASPIQGQGQLDPYS+DLEQK
Sbjct: 61  NPPYLDHELTCPVKTDSSFWTLEDGIMHITLQKRDKGQTWASPIQGQGQLDPYSTDLEQK 120

Query: 121 RLMLQRFQEENPGFDFSQAQFSGNCPDPRTFMGGI 155
           RLMLQRFQEENPGFDFSQAQFSGNCPDPRTFMGGI
Sbjct: 121 RLMLQRFQEENPGFDFSQAQFSGNCPDPRTFMGGI 155

[Close]

BLAST of CsGy1G023340 vs. ExPASy TrEMBL
Match: A0A0A0LV57 (CS domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G530660 PE=4 SV=1)

HSP 1 Score: 333 bits (855), Expect = 5.50e-116
Identity = 156/156 (100.00%), Postives = 156/156 (100.00%), Query Frame = 0


Query: 1   MAEKLAPEKRHSFLHNGQEVFEWDQTLEEVNIYINLPPNVNSKQFYCKIQSRHVELGIKG 60
           MAEKLAPEKRHSFLHNGQEVFEWDQTLEEVNIYINLPPNVNSKQFYCKIQSRHVELGIKG
Sbjct: 1   MAEKLAPEKRHSFLHNGQEVFEWDQTLEEVNIYINLPPNVNSKQFYCKIQSRHVELGIKG 60

Query: 61  NPPYLNHELTCPVKTDSSFWTLEDDIMHITLQKRDKGQTWASPIQGQGQLDPYSSDLEQK 120
           NPPYLNHELTCPVKTDSSFWTLEDDIMHITLQKRDKGQTWASPIQGQGQLDPYSSDLEQK
Sbjct: 61  NPPYLNHELTCPVKTDSSFWTLEDDIMHITLQKRDKGQTWASPIQGQGQLDPYSSDLEQK 120

Query: 121 RLMLQRFQEENPGFDFSQAQFSGNCPDPRTFMGGIR 156
           RLMLQRFQEENPGFDFSQAQFSGNCPDPRTFMGGIR
Sbjct: 121 RLMLQRFQEENPGFDFSQAQFSGNCPDPRTFMGGIR 156

[Close]

BLAST of CsGy1G023340 vs. ExPASy TrEMBL
Match: A0A5A7SMF6 (NudC domain-containing protein 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold848G00610 PE=4 SV=1)

HSP 1 Score: 331 bits (848), Expect = 6.89e-115
Identity = 154/156 (98.72%), Postives = 156/156 (100.00%), Query Frame = 0


Query: 1   MAEKLAPEKRHSFLHNGQEVFEWDQTLEEVNIYINLPPNVNSKQFYCKIQSRHVELGIKG 60
           MAEKLAPEKRHSFLHNGQ+VFEWDQTLEEVNIYINLPPNVNSKQFYCKIQSRHVE+GIKG
Sbjct: 1   MAEKLAPEKRHSFLHNGQKVFEWDQTLEEVNIYINLPPNVNSKQFYCKIQSRHVEVGIKG 60

Query: 61  NPPYLNHELTCPVKTDSSFWTLEDDIMHITLQKRDKGQTWASPIQGQGQLDPYSSDLEQK 120
           NPPYLNHELTCPVKTDSSFWTLEDDIMHITLQKRDKGQTWASPIQGQGQLDPYSSDLEQK
Sbjct: 61  NPPYLNHELTCPVKTDSSFWTLEDDIMHITLQKRDKGQTWASPIQGQGQLDPYSSDLEQK 120

Query: 121 RLMLQRFQEENPGFDFSQAQFSGNCPDPRTFMGGIR 156
           RLMLQRFQEENPGFDFSQAQFSGNCPDPRTFMGGIR
Sbjct: 121 RLMLQRFQEENPGFDFSQAQFSGNCPDPRTFMGGIR 156

[Close]

BLAST of CsGy1G023340 vs. ExPASy TrEMBL
Match: A0A1S3C618 (nudC domain-containing protein 2 OS=Cucumis melo OX=3656 GN=LOC103497082 PE=4 SV=1)

HSP 1 Score: 331 bits (848), Expect = 6.89e-115
Identity = 154/156 (98.72%), Postives = 156/156 (100.00%), Query Frame = 0


Query: 1   MAEKLAPEKRHSFLHNGQEVFEWDQTLEEVNIYINLPPNVNSKQFYCKIQSRHVELGIKG 60
           MAEKLAPEKRHSFLHNGQ+VFEWDQTLEEVNIYINLPPNVNSKQFYCKIQSRHVE+GIKG
Sbjct: 1   MAEKLAPEKRHSFLHNGQKVFEWDQTLEEVNIYINLPPNVNSKQFYCKIQSRHVEVGIKG 60

Query: 61  NPPYLNHELTCPVKTDSSFWTLEDDIMHITLQKRDKGQTWASPIQGQGQLDPYSSDLEQK 120
           NPPYLNHELTCPVKTDSSFWTLEDDIMHITLQKRDKGQTWASPIQGQGQLDPYSSDLEQK
Sbjct: 61  NPPYLNHELTCPVKTDSSFWTLEDDIMHITLQKRDKGQTWASPIQGQGQLDPYSSDLEQK 120

Query: 121 RLMLQRFQEENPGFDFSQAQFSGNCPDPRTFMGGIR 156
           RLMLQRFQEENPGFDFSQAQFSGNCPDPRTFMGGIR
Sbjct: 121 RLMLQRFQEENPGFDFSQAQFSGNCPDPRTFMGGIR 156

[Close]

BLAST of CsGy1G023340 vs. ExPASy TrEMBL
Match: A0A6J1GA51 (nudC domain-containing protein 2-like OS=Cucurbita moschata OX=3662 GN=LOC111452345 PE=4 SV=1)

HSP 1 Score: 323 bits (828), Expect = 7.75e-112
Identity = 150/155 (96.77%), Postives = 154/155 (99.35%), Query Frame = 0


Query: 1   MAEKLAPEKRHSFLHNGQEVFEWDQTLEEVNIYINLPPNVNSKQFYCKIQSRHVELGIKG 60
           MAEKLAPEKRHSFLHNGQEVFEWDQTLEEVN+YINLPPNV+SKQFYCKIQSRHVELGIKG
Sbjct: 1   MAEKLAPEKRHSFLHNGQEVFEWDQTLEEVNMYINLPPNVHSKQFYCKIQSRHVELGIKG 60

Query: 61  NPPYLNHELTCPVKTDSSFWTLEDDIMHITLQKRDKGQTWASPIQGQGQLDPYSSDLEQK 120
           NPPYLNHELTCPVKTDSSFWTLED IMHITLQKRDKGQTWASPIQGQG+LDPYS+DLEQK
Sbjct: 61  NPPYLNHELTCPVKTDSSFWTLEDGIMHITLQKRDKGQTWASPIQGQGRLDPYSTDLEQK 120

Query: 121 RLMLQRFQEENPGFDFSQAQFSGNCPDPRTFMGGI 155
           RLMLQRFQEENPGFDFSQAQFSGNCPDPRTFMGGI
Sbjct: 121 RLMLQRFQEENPGFDFSQAQFSGNCPDPRTFMGGI 155

[Close]

BLAST of CsGy1G023340 vs. ExPASy TrEMBL
Match: A0A6J1I2V0 (nudC domain-containing protein 2-like OS=Cucurbita maxima OX=3661 GN=LOC111469416 PE=4 SV=1)

HSP 1 Score: 321 bits (822), Expect = 6.37e-111
Identity = 148/156 (94.87%), Postives = 154/156 (98.72%), Query Frame = 0


Query: 1   MAEKLAPEKRHSFLHNGQEVFEWDQTLEEVNIYINLPPNVNSKQFYCKIQSRHVELGIKG 60
           MAEKLAPEKRHSFLHNGQ+VFEWDQTLEEVNIYINLPPNV+SKQFYCKIQS HVE+GIKG
Sbjct: 1   MAEKLAPEKRHSFLHNGQKVFEWDQTLEEVNIYINLPPNVHSKQFYCKIQSTHVEVGIKG 60

Query: 61  NPPYLNHELTCPVKTDSSFWTLEDDIMHITLQKRDKGQTWASPIQGQGQLDPYSSDLEQK 120
           NPPYLNH LTCPVKTDSSFWTLEDDIMHITLQKRDKGQTWASPIQGQGQLDPY++DLEQK
Sbjct: 61  NPPYLNHHLTCPVKTDSSFWTLEDDIMHITLQKRDKGQTWASPIQGQGQLDPYTTDLEQK 120

Query: 121 RLMLQRFQEENPGFDFSQAQFSGNCPDPRTFMGGIR 156
           RLMLQRFQEENPGFDFSQAQFSGNCPDPR+FMGGIR
Sbjct: 121 RLMLQRFQEENPGFDFSQAQFSGNCPDPRSFMGGIR 156

[Close]

BLAST of CsGy1G023340 vs. TAIR 10
Match: AT5G58740.1 (HSP20-like chaperones superfamily protein )

HSP 1 Score: 302.8 bits (774), Expect = 1.7e-82
Identity = 135/156 (86.54%), Postives = 149/156 (95.51%), Query Frame = 0


Query: 1   MAEKLAPEKRHSFLHNGQEVFEWDQTLEEVNIYINLPPNVNSKQFYCKIQSRHVELGIKG 60
           MAEKLAPEKRH F+HNGQ+VFEWDQTLEEVN+YI LPPNV+ K F+CKIQS+H+E+GIKG
Sbjct: 1   MAEKLAPEKRHDFIHNGQKVFEWDQTLEEVNMYITLPPNVHPKSFHCKIQSKHIEVGIKG 60

Query: 61  NPPYLNHELTCPVKTDSSFWTLEDDIMHITLQKRDKGQTWASPIQGQGQLDPYSSDLEQK 120
           NPPYLNH+L+ PVKTD SFWTLEDDIMHITLQKR+KGQTWASPI GQGQLDPY++DLEQK
Sbjct: 61  NPPYLNHDLSAPVKTDCSFWTLEDDIMHITLQKREKGQTWASPILGQGQLDPYATDLEQK 120

Query: 121 RLMLQRFQEENPGFDFSQAQFSGNCPDPRTFMGGIR 157
           RLMLQRFQEENPGFDFSQAQFSGNCPDPR+FMGGIR
Sbjct: 121 RLMLQRFQEENPGFDFSQAQFSGNCPDPRSFMGGIR 156

[Close]

BLAST of CsGy1G023340 vs. TAIR 10
Match: AT4G27890.1 (HSP20-like chaperones superfamily protein )

HSP 1 Score: 78.2 bits (191), Expect = 6.6e-15
Identity = 46/160 (28.75%), Postives = 76/160 (47.50%), Query Frame = 0


Query: 19  EVFEWDQTLEEVNIYINLPPNVNSKQFYCKIQSRHVELGIKGNPPYLNHELTCPVKTDSS 78
           E + W Q L+EV I I +P    S+   C+I+   +++G+KG    ++ E    VK D  
Sbjct: 134 EKYSWGQNLQEVTINIPMPEGTKSRSVTCEIKKNRLKVGLKGQDLIVDGEFFNSVKPDDC 193

Query: 79  FWTLEDD-IMHITLQKRDKGQTWASPIQGQ---------------GQLDPYS-------- 138
           FW +ED  ++ + L K+D+ + W   ++G+               G LDP +        
Sbjct: 194 FWNIEDQKMISVLLTKQDQMEWWKYCVKGEPEIDTQKVEPETSKLGDLDPETRASVEKMM 253

Query: 139 ------------SDLEQKRLMLQRFQEENPGFDFSQAQFS 143
                       SD  +K+ ML++F  +NPG DFS A+F+
Sbjct: 254 FDQRQKQMGLPRSDEIEKKDMLKKFMAQNPGMDFSNAKFN 293

[Close]

BLAST of CsGy1G023340 vs. TAIR 10
Match: AT5G53400.1 (HSP20-like chaperones superfamily protein )

HSP 1 Score: 74.7 bits (182), Expect = 7.3e-14
Identity = 44/160 (27.50%), Postives = 76/160 (47.50%), Query Frame = 0


Query: 19  EVFEWDQTLEEVNIYINLPPNVNSKQFYCKIQSRHVELGIKGNPPYLNHELTCPVKTDSS 78
           E + W Q L+EV + I +P    ++   C+I+   +++G+KG  P ++ EL   VK D  
Sbjct: 145 ENYSWIQNLQEVTVNIPVPTGTKARTVVCEIKKNRLKVGLKGQDPIVDGELYRSVKPDDC 204

Query: 79  FWTLEDD-IMHITLQKRDKGQTWASPIQGQ---------------GQLDPY--------- 138
           +W +ED  ++ I L K D+ + W   ++G+               G LDP          
Sbjct: 205 YWNIEDQKVISILLTKSDQMEWWKCCVKGEPEIDTQKVEPETSKLGDLDPETRSTVEKMM 264

Query: 139 -----------SSDLEQKRLMLQRFQEENPGFDFSQAQFS 143
                      +S+  QK+ +L++F  E+P  DFS A+F+
Sbjct: 265 FDQRQKQMGLPTSEELQKQEILKKFMSEHPEMDFSNAKFN 304

The following BLAST results are available for this feature:

BLAST of CsGy1G023340 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8WVJ2	1.6e-21	40.71	NudC domain-containing protein 2 OS=Homo sapiens OX=9606 GN=NUDCD2 PE=1 SV=1	[more]
Q9CQ48	1.6e-21	40.71	NudC domain-containing protein 2 OS=Mus musculus OX=10090 GN=Nudcd2 PE=1 SV=1	[more]
Q5M823	3.5e-21	42.86	NudC domain-containing protein 2 OS=Rattus norvegicus OX=10116 GN=Nudcd2 PE=2 SV...	[more]
Q9STN7	9.3e-14	28.75	Protein BOBBER 2 OS=Arabidopsis thaliana OX=3702 GN=BOB2 PE=2 SV=1	[more]
Q9LV09	1.0e-12	27.50	Protein BOBBER 1 OS=Arabidopsis thaliana OX=3702 GN=BOB1 PE=1 SV=1	[more]

BLAST of CsGy1G023340 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004151457.1	1.14e-115	100.00	nudC domain-containing protein 2 [Cucumis sativus] >KGN65805.1 hypothetical prot...	[more]
XP_008457374.1	1.42e-114	98.72	PREDICTED: nudC domain-containing protein 2 [Cucumis melo] >KAA0031818.1 nudC do...	[more]
XP_038894388.1	2.76e-112	96.15	nudC domain-containing protein 2 [Benincasa hispida]	[more]
KAG6607306.1	3.93e-112	97.42	NudC domain-containing protein 2, partial [Cucurbita argyrosperma subsp. sororia...	[more]
XP_023523271.1	7.93e-112	97.42	nudC domain-containing protein 2-like isoform X2 [Cucurbita pepo subsp. pepo]	[more]

BLAST of CsGy1G023340 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LV57	5.50e-116	100.00	CS domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G530660 PE=4 SV=...	[more]
A0A5A7SMF6	6.89e-115	98.72	NudC domain-containing protein 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27...	[more]
A0A1S3C618	6.89e-115	98.72	nudC domain-containing protein 2 OS=Cucumis melo OX=3656 GN=LOC103497082 PE=4 SV...	[more]
A0A6J1GA51	7.75e-112	96.77	nudC domain-containing protein 2-like OS=Cucurbita moschata OX=3662 GN=LOC111452...	[more]
A0A6J1I2V0	6.37e-111	94.87	nudC domain-containing protein 2-like OS=Cucurbita maxima OX=3661 GN=LOC11146941...	[more]

BLAST of CsGy1G023340 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G58740.1	1.7e-82	86.54	HSP20-like chaperones superfamily protein	[more]
AT4G27890.1	6.6e-15	28.75	HSP20-like chaperones superfamily protein	[more]
AT5G53400.1	7.3e-14	27.50	HSP20-like chaperones superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	1.20.5.740	Single helix bin	coord: 103..131 e-value: 9.3E-6 score: 27.4
None	No IPR available	PANTHER	PTHR12356:SF18	HSP20-LIKE CHAPERONES SUPERFAMILY PROTEIN	coord: 2..148
None	No IPR available	CDD	cd06467	p23_NUDC_like	coord: 21..104 e-value: 7.35234E-36 score: 117.263
IPR007052	CS domain	PFAM	PF04969	CS	coord: 21..93 e-value: 1.2E-17 score: 64.7
IPR007052	CS domain	PROSITE	PS51203	CS	coord: 16..104 score: 15.960659
IPR008978	HSP20-like chaperone	GENE3D	2.60.40.790		coord: 16..102 e-value: 5.0E-22 score: 80.3
IPR008978	HSP20-like chaperone	SUPERFAMILY	49764	HSP20-like chaperones	coord: 10..114
IPR037898	NudC family	PANTHER	PTHR12356	NUCLEAR MOVEMENT PROTEIN NUDC	coord: 2..148

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy1G023340.1	CsGy1G023340.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006457	protein folding
cellular_component	GO:0005737	cytoplasm
molecular_function	GO:0051082	unfolded protein binding