CsGy1G023035 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy1G023035
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	DNA-directed RNA polymerases I and III subunit RPAC2
Location	Gy14Chr1: 21932542 .. 21934432 (+)
RNA-Seq Expression	CsGy1G023035
Synteny	CsGy1G023035

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAACATGGATCCTTTACAGATGAGACCAAATCAACATTTTCTATGGCTGATGAAGATCATACACTTGCAAATGCTCTCAGATGCACTTTGAATCAAGAGTAGGAGCTCTTATTCAGTTATTCTTGAGTGAATACTTTGAAATGTCCACGATCATTTTTTCTAACCATTTCATCATGGACATCTATTAATTCATGACATTAATAATTAAATAGATTCTTGGTTCTTGTGAACATATAATCAACAAGGTCCTTGAAGAATTGATTAGGTTCTTGGATAATCCATGAGGCATAAATTGATAAATAATGTACACCCATTGCATGTGTTAATATGGGTTCTTTTACCGTCTATTCGGAAGAGTTATAAATATGGACATCTTTTTCACTTATTCAAGCAATAGGAATTGATCATTTGGTTGTGGTTTCTTTCCCTGTTAAAAAAAACTGGTTTAGATTGTTGTTATACTTTAGTAAACCATATCTGACATACTTTTAAATAACTTGTAATATCATCTTGCAGTCCAAGAGTGACATTCTGTGGGTATAGCATCCCTCATCCTTCAGATAATCGAGTTAATATTAGAGTCCAGACAACAGGTAATATTTTGAGGTTGTTTGACTCTCTAATTGGTTCACATTTCAGAATTTTTTTTCTAATGATTGGATTTGTTCTATCTTGATTTTTCTTCTTTATACACATCTAATTTATGCATTCATGAGATATATAGCTTTTGGATCCATGCAATGAGTGATCCTTCTAAGAATTTTTTTTTCCAACAAAATCGCCTTTTTTTGCAGAACACATGTTGGATCCTTGTAGCTTTTCTAGAACCCCATTAGTTTTTATAATTGAATAGAACCCATGGAAACAGCTGTACAACATATAGAACTGATTCTGTTCAAGTAAGGTCGTGGTAAAAAATAAATTTTACTACTTGAAATTAGGGTCTATCTATTTAGTTCTCTAACTTTAACAAGATTCAATTATTTGTCCAAATTTTGAATAGCTATTGTCCATAGTTCTCACCATCGACACTGGTAACTCACGTTGACATGATATATGTATTCGAAAAATATTAGTTGATTGGATGTAACATGACAGAAAAATAGTATGAAGTATATAACTATAAAAAATAATAGTAGCACATAAAAGGGATTTGATACGTTGCTTTGAAAAGATATTATGTTGCATATGCTTGTTTATTTTATTCAATTGTCCACTTTTTTCCACATTACAATGTTAGTAAGTACGACTATACGTGATTAATTACACTTCAAAGTTTGAAAGCCATGTTTAAAACTTTTTAAAATGATAATACCTATTGGGCACAACTATGAAGTTACACTAGAACACAGTTGTACAACCTAGAGAATAGATCCTATTCAAGTGGGGTAATAGATCTATAATTTAATCTCAAACATATATGCATAAGCATACCCATTTGCAATTGTAAAGTAAAACCCAAGGTACCAAGATGTTTGAGGCTGAGGCCTAAAAAATAGTGTCCCAAATGAATGGTCTTTACTCTTTCTCCATGGCTGGATTTGTTGAACCCAGTGATCTGCAGTTGAAAGTAGACAAAGCTATTATTGATTACTAGGGAAAAGCAAAGCACATGGGAAAATGGTAGGGGCAATATAGCAAACAGAAGGCTATTTGTTGAAGTGACTATGCATTATTAGTAGCATTAACAATAGCATTAGAGATCACTGATGAAAGGGGTTTTTGATTGAACATGGCAGGTGATCCTGCTAGAGAAGTTTTGAAAGATGCTTGTCAGAACTTGATGGTGGTGTGTCAGCATGTGAGGAACACATTTGACAAGGCTGTGCTTGATTTCAATCTCACCAAACCAAAAGAAAAACCTGTGGGAGACATTAATATCAAATAG

mRNA sequence

ATGGAACATGGATCCTTTACAGATGAGACCAAATCAACATTTTCTATGGCTGATGAAGATCATACACTTGCAAATGCTCTCAGATGCACTTTGAATCAAGATCCAAGAGTGACATTCTGTGGGTATAGCATCCCTCATCCTTCAGATAATCGAGTTAATATTAGAGTCCAGACAACAGGTGATCCTGCTAGAGAAGTTTTGAAAGATGCTTGTCAGAACTTGATGGTGGTGTGTCAGCATGTGAGGAACACATTTGACAAGGCTGTGCTTGATTTCAATCTCACCAAACCAAAAGAAAAACCTGTGGGAGACATTAATATCAAATAG

Coding sequence (CDS)

ATGGAACATGGATCCTTTACAGATGAGACCAAATCAACATTTTCTATGGCTGATGAAGATCATACACTTGCAAATGCTCTCAGATGCACTTTGAATCAAGATCCAAGAGTGACATTCTGTGGGTATAGCATCCCTCATCCTTCAGATAATCGAGTTAATATTAGAGTCCAGACAACAGGTGATCCTGCTAGAGAAGTTTTGAAAGATGCTTGTCAGAACTTGATGGTGGTGTGTCAGCATGTGAGGAACACATTTGACAAGGCTGTGCTTGATTTCAATCTCACCAAACCAAAAGAAAAACCTGTGGGAGACATTAATATCAAATAG

Protein sequence

MEHGSFTDETKSTFSMADEDHTLANALRCTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDPAREVLKDACQNLMVVCQHVRNTFDKAVLDFNLTKPKEKPVGDINIK*

Homology

[Close]

BLAST of CsGy1G023035 vs. ExPASy Swiss-Prot
Match: Q5XK67 (DNA-directed RNA polymerases I and III subunit RPAC2 OS=Xenopus laevis OX=8355 GN=polr1d PE=3 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 3.1e-16
Identity = 40/90 (44.44%), Postives = 59/90 (65.56%), Query Frame = 0


Query: 8   DETKSTFSMADEDHTLANALRCTLNQDPRVTFCGYSIPHPSDNRVNIRVQT-TGDPAREV 67
           +E+  TF + +EDHTL N+LR  + ++P V FCGYSI HPS+ ++N R+QT  G PA E 
Sbjct: 20  EESCVTFVLHEEDHTLGNSLRYMVMKNPEVEFCGYSITHPSETKINFRIQTRNGIPAVEP 79

Query: 68  LKDACQNLMVVCQHVRNTFDKAVLDFNLTK 97
            +     L+ VCQHV NTF+ ++ ++   K
Sbjct: 80  FRRGLNELVDVCQHVLNTFETSIKEYKEQK 109

[Close]

BLAST of CsGy1G023035 vs. ExPASy Swiss-Prot
Match: P97304 (DNA-directed RNA polymerases I and III subunit RPAC2 OS=Mus musculus OX=10090 GN=Polr1d PE=1 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 1.5e-15
Identity = 40/101 (39.60%), Postives = 60/101 (59.41%), Query Frame = 0


Query: 1   MEHGSFTDETKSTFSMADEDHTLANALRCTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG 60
           M   + TD    TF + +EDHTL N LR  + ++P V FCGY+  HPS++++N+R+QT G
Sbjct: 29  MVQAAGTDRQCVTFVLHEEDHTLGNCLRYIIMKNPEVEFCGYTTTHPSESKINLRIQTRG 88

Query: 61  D-PAREVLKDACQNLMVVCQHVRNTFDKAVLDFNLTKPKEK 101
             PA E  +     L+ VCQHV   F+ ++ D+   K  +K
Sbjct: 89  ALPAVEPFQKGLNELLNVCQHVLVKFEASIKDYKAKKASKK 129

[Close]

BLAST of CsGy1G023035 vs. ExPASy Swiss-Prot
Match: P0DPB6 (DNA-directed RNA polymerases I and III subunit RPAC2 OS=Homo sapiens OX=9606 GN=POLR1D PE=1 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 2.0e-15
Identity = 39/93 (41.94%), Postives = 59/93 (63.44%), Query Frame = 0


Query: 1   MEHGSFTDETKSTFSMADEDHTLANALRCTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG 60
           M   + TD    TF + +EDHTL N+LR  + ++P V FCGY+  HPS++++N+R+QT G
Sbjct: 29  MVQAAGTDRHCVTFVLHEEDHTLGNSLRYMIMKNPEVEFCGYTTTHPSESKINLRIQTRG 88

Query: 61  D-PAREVLKDACQNLMVVCQHVRNTFDKAVLDF 93
             PA E  +     LM VCQHV + F+ ++ D+
Sbjct: 89  TLPAVEPFQRGLNELMNVCQHVLDKFEASIKDY 121

[Close]

BLAST of CsGy1G023035 vs. ExPASy Swiss-Prot
Match: Q6DRI4 (DNA-directed RNA polymerases I and III subunit RPAC2 OS=Danio rerio OX=7955 GN=polr1d PE=3 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 2.6e-15
Identity = 40/86 (46.51%), Postives = 56/86 (65.12%), Query Frame = 0


Query: 8   DETKSTFSMADEDHTLANALRCTLNQDPRVTFCGYSIPHPSDNRVNIRVQT-TGDPAREV 67
           DE   TF + +EDHTL N+LR  + +   V FCGYSI HPS++++N R+QT  G PA E 
Sbjct: 19  DEGCVTFVLNEEDHTLGNSLRYMIMKSQDVEFCGYSITHPSESKINFRIQTRDGVPASEP 78

Query: 68  LKDACQNLMVVCQHVRNTFDKAVLDF 93
           L++   NL  VC+HV  TF+  + +F
Sbjct: 79  LRNGLNNLTDVCKHVLQTFEARMKEF 104

[Close]

BLAST of CsGy1G023035 vs. ExPASy Swiss-Prot
Match: P28000 (DNA-directed RNA polymerases I and III subunit RPAC2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=RPC19 PE=1 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 4.5e-15
Identity = 38/83 (45.78%), Postives = 57/83 (68.67%), Query Frame = 0


Query: 8   DETKSTFSMADEDHTLANALRCTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGD-PAREV 67
           D T ++F + +EDHTL NALR  + ++P V FCGYSIPHPS+N +NIR+QT G+  A + 
Sbjct: 57  DGTSASFQIVEEDHTLGNALRYVIMKNPDVEFCGYSIPHPSENLLNIRIQTYGETTAVDA 116

Query: 68  LKDACQNLMVVCQHVRNTFDKAV 90
           L+   ++LM +C  V + F + +
Sbjct: 117 LQKGLKDLMDLCDVVESKFTEKI 139

[Close]

BLAST of CsGy1G023035 vs. NCBI nr
Match: XP_004145267.1 (DNA-directed RNA polymerases I and III subunit RPAC2 [Cucumis sativus] >KGN65775.1 hypothetical protein Csa_023153 [Cucumis sativus])

HSP 1 Score: 227 bits (578), Expect = 5.62e-75
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 0


Query: 1   MEHGSFTDETKSTFSMADEDHTLANALRCTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG 60
           MEHGSFTDETKSTFSMADEDHTLANALRCTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG
Sbjct: 1   MEHGSFTDETKSTFSMADEDHTLANALRCTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG 60

Query: 61  DPAREVLKDACQNLMVVCQHVRNTFDKAVLDFNLTKPKEKPVGDINIK 108
           DPAREVLKDACQNLMVVCQHVRNTFDKAVLDFNLTKPKEKPVGDINIK
Sbjct: 61  DPAREVLKDACQNLMVVCQHVRNTFDKAVLDFNLTKPKEKPVGDINIK 108

[Close]

BLAST of CsGy1G023035 vs. NCBI nr
Match: XP_008457416.1 (PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC2 [Cucumis melo] >XP_008457417.1 PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC2 [Cucumis melo] >TYJ97352.1 DNA-directed RNA polymerases I and III subunit RPAC2 [Cucumis melo var. makuwa])

HSP 1 Score: 214 bits (545), Expect = 6.10e-70
Identity = 103/108 (95.37%), Postives = 105/108 (97.22%), Query Frame = 0


Query: 1   MEHGSFTDETKSTFSMADEDHTLANALRCTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG 60
           MEHGSFTDETKSTFSMADEDHTLANALR TLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG
Sbjct: 1   MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG 60

Query: 61  DPAREVLKDACQNLMVVCQHVRNTFDKAVLDFNLTKPKEKPVGDINIK 108
           DPAREVLKDACQNLMVVCQHVRNTFDKAVLDFNLTK KE+P GDINI+
Sbjct: 61  DPAREVLKDACQNLMVVCQHVRNTFDKAVLDFNLTKAKEEPEGDINIE 108

[Close]

BLAST of CsGy1G023035 vs. NCBI nr
Match: KAA0031779.1 (DNA-directed RNA polymerases I and III subunit RPAC2 [Cucumis melo var. makuwa])

HSP 1 Score: 212 bits (540), Expect = 3.53e-69
Identity = 102/108 (94.44%), Postives = 105/108 (97.22%), Query Frame = 0


Query: 1   MEHGSFTDETKSTFSMADEDHTLANALRCTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG 60
           MEHGSFTDETKSTFSMADEDHTLANALR TLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG
Sbjct: 1   MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG 60

Query: 61  DPAREVLKDACQNLMVVCQHVRNTFDKAVLDFNLTKPKEKPVGDINIK 108
           DPAREVLKDACQNLMVVCQHVRNTFDKAVLDFNLTK KE+P GDI+I+
Sbjct: 61  DPAREVLKDACQNLMVVCQHVRNTFDKAVLDFNLTKAKEEPEGDISIE 108

[Close]

BLAST of CsGy1G023035 vs. NCBI nr
Match: XP_038893936.1 (DNA-directed RNA polymerases I and III subunit RPAC2 [Benincasa hispida])

HSP 1 Score: 204 bits (518), Expect = 7.06e-66
Identity = 101/108 (93.52%), Postives = 101/108 (93.52%), Query Frame = 0


Query: 1   MEHGSFTDETKSTFSMADEDHTLANALRCTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG 60
           MEHGSFTDETKSTFSMADEDHTLANALR TLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG
Sbjct: 1   MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG 60

Query: 61  DPAREVLKDACQNLMVVCQHVRNTFDKAVLDFNLTKPKEKPVGDINIK 108
           DPAREVLKDACQNLMVVCQHVRNTFDKAVLD  LTKP    VGDINIK
Sbjct: 61  DPAREVLKDACQNLMVVCQHVRNTFDKAVLDIKLTKP----VGDINIK 104

[Close]

BLAST of CsGy1G023035 vs. NCBI nr
Match: XP_023522054.1 (DNA-directed RNA polymerases I and III subunit RPAC2-like [Cucurbita pepo subsp. pepo] >XP_023524948.1 DNA-directed RNA polymerases I and III subunit RPAC2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 197 bits (502), Expect = 1.95e-63
Identity = 97/108 (89.81%), Postives = 99/108 (91.67%), Query Frame = 0


Query: 1   MEHGSFTDETKSTFSMADEDHTLANALRCTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG 60
           MEHGSFTDETKSTFSMADEDHTLAN++R TLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG
Sbjct: 1   MEHGSFTDETKSTFSMADEDHTLANSIRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG 60

Query: 61  DPAREVLKDACQNLMVVCQHVRNTFDKAVLDFNLTKPKEKPVGDINIK 108
           DPAREVLKDACQNLM VCQHVRNT DKAVLD  LTKP    VGDINIK
Sbjct: 61  DPAREVLKDACQNLMAVCQHVRNTLDKAVLDHKLTKP----VGDINIK 104

[Close]

BLAST of CsGy1G023035 vs. ExPASy TrEMBL
Match: A0A0A0LV21 (RNA_pol_L_2 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G527910 PE=3 SV=1)

HSP 1 Score: 227 bits (578), Expect = 2.72e-75
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 0


Query: 1   MEHGSFTDETKSTFSMADEDHTLANALRCTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG 60
           MEHGSFTDETKSTFSMADEDHTLANALRCTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG
Sbjct: 1   MEHGSFTDETKSTFSMADEDHTLANALRCTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG 60

Query: 61  DPAREVLKDACQNLMVVCQHVRNTFDKAVLDFNLTKPKEKPVGDINIK 108
           DPAREVLKDACQNLMVVCQHVRNTFDKAVLDFNLTKPKEKPVGDINIK
Sbjct: 61  DPAREVLKDACQNLMVVCQHVRNTFDKAVLDFNLTKPKEKPVGDINIK 108

[Close]

BLAST of CsGy1G023035 vs. ExPASy TrEMBL
Match: A0A1S3C5G1 (DNA-directed RNA polymerases I and III subunit RPAC2 OS=Cucumis melo OX=3656 GN=LOC103497108 PE=3 SV=1)

HSP 1 Score: 214 bits (545), Expect = 2.95e-70
Identity = 103/108 (95.37%), Postives = 105/108 (97.22%), Query Frame = 0


Query: 1   MEHGSFTDETKSTFSMADEDHTLANALRCTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG 60
           MEHGSFTDETKSTFSMADEDHTLANALR TLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG
Sbjct: 1   MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG 60

Query: 61  DPAREVLKDACQNLMVVCQHVRNTFDKAVLDFNLTKPKEKPVGDINIK 108
           DPAREVLKDACQNLMVVCQHVRNTFDKAVLDFNLTK KE+P GDINI+
Sbjct: 61  DPAREVLKDACQNLMVVCQHVRNTFDKAVLDFNLTKAKEEPEGDINIE 108

[Close]

BLAST of CsGy1G023035 vs. ExPASy TrEMBL
Match: A0A5D3BBZ7 (DNA-directed RNA polymerases I and III subunit RPAC2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold194G001620 PE=3 SV=1)

HSP 1 Score: 214 bits (545), Expect = 2.95e-70
Identity = 103/108 (95.37%), Postives = 105/108 (97.22%), Query Frame = 0


Query: 1   MEHGSFTDETKSTFSMADEDHTLANALRCTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG 60
           MEHGSFTDETKSTFSMADEDHTLANALR TLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG
Sbjct: 1   MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG 60

Query: 61  DPAREVLKDACQNLMVVCQHVRNTFDKAVLDFNLTKPKEKPVGDINIK 108
           DPAREVLKDACQNLMVVCQHVRNTFDKAVLDFNLTK KE+P GDINI+
Sbjct: 61  DPAREVLKDACQNLMVVCQHVRNTFDKAVLDFNLTKAKEEPEGDINIE 108

[Close]

BLAST of CsGy1G023035 vs. ExPASy TrEMBL
Match: A0A5A7SR68 (DNA-directed RNA polymerases I and III subunit RPAC2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold848G00190 PE=3 SV=1)

HSP 1 Score: 212 bits (540), Expect = 1.71e-69
Identity = 102/108 (94.44%), Postives = 105/108 (97.22%), Query Frame = 0


Query: 1   MEHGSFTDETKSTFSMADEDHTLANALRCTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG 60
           MEHGSFTDETKSTFSMADEDHTLANALR TLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG
Sbjct: 1   MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG 60

Query: 61  DPAREVLKDACQNLMVVCQHVRNTFDKAVLDFNLTKPKEKPVGDINIK 108
           DPAREVLKDACQNLMVVCQHVRNTFDKAVLDFNLTK KE+P GDI+I+
Sbjct: 61  DPAREVLKDACQNLMVVCQHVRNTFDKAVLDFNLTKAKEEPEGDISIE 108

[Close]

BLAST of CsGy1G023035 vs. ExPASy TrEMBL
Match: A0A6J1D9Q8 (DNA-directed RNA polymerases I and III subunit RPAC2 OS=Momordica charantia OX=3673 GN=LOC111018936 PE=3 SV=1)

HSP 1 Score: 197 bits (502), Expect = 9.43e-64
Identity = 97/108 (89.81%), Postives = 101/108 (93.52%), Query Frame = 0


Query: 1   MEHGSFTDETKSTFSMADEDHTLANALRCTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG 60
           MEHGSF+DE+KSTFSMADEDHTLANALR TLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG
Sbjct: 1   MEHGSFSDESKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG 60

Query: 61  DPAREVLKDACQNLMVVCQHVRNTFDKAVLDFNLTKPKEKPVGDINIK 108
           D AREVLKD+CQNLMVVCQHVRNTFDK+VLDF LTKP    VGDINIK
Sbjct: 61  DSAREVLKDSCQNLMVVCQHVRNTFDKSVLDFKLTKP----VGDINIK 104

[Close]

BLAST of CsGy1G023035 vs. TAIR 10
Match: AT2G29540.1 (RNApolymerase 14 kDa subunit )

HSP 1 Score: 134.4 bits (337), Expect = 5.4e-32
Identity = 62/108 (57.41%), Postives = 84/108 (77.78%), Query Frame = 0


Query: 1   MEHGSFTDETKSTFSMADEDHTLANALRCTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG 60
           MEHGSFT+ + ++F++++EDHTLANA+R  LNQDPRVT   Y+IPHPS  +VNIRVQTTG
Sbjct: 1   MEHGSFTNVSHASFTLSEEDHTLANAVRFVLNQDPRVTVAAYTIPHPSLEQVNIRVQTTG 60

Query: 61  DPAREVLKDACQNLMVVCQHVRNTFDKAVLDFNLTKPKEKPVGDINIK 109
           DPAREV KDACQ LM + +HVR+ FDKAV ++   + +++   +  +K
Sbjct: 61  DPAREVFKDACQELMQMNRHVRSVFDKAVAEYKDEQKRKEEAEEEELK 108

[Close]

BLAST of CsGy1G023035 vs. TAIR 10
Match: AT2G29540.2 (RNApolymerase 14 kDa subunit )

HSP 1 Score: 134.4 bits (337), Expect = 5.4e-32
Identity = 62/108 (57.41%), Postives = 84/108 (77.78%), Query Frame = 0


Query: 1   MEHGSFTDETKSTFSMADEDHTLANALRCTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG 60
           MEHGSFT+ + ++F++++EDHTLANA+R  LNQDPRVT   Y+IPHPS  +VNIRVQTTG
Sbjct: 1   MEHGSFTNVSHASFTLSEEDHTLANAVRFVLNQDPRVTVAAYTIPHPSLEQVNIRVQTTG 60

Query: 61  DPAREVLKDACQNLMVVCQHVRNTFDKAVLDFNLTKPKEKPVGDINIK 109
           DPAREV KDACQ LM + +HVR+ FDKAV ++   + +++   +  +K
Sbjct: 61  DPAREVFKDACQELMQMNRHVRSVFDKAVAEYKDEQKRKEEAEEEELK 108

[Close]

BLAST of CsGy1G023035 vs. TAIR 10
Match: AT2G29540.3 (RNApolymerase 14 kDa subunit )

HSP 1 Score: 89.7 bits (221), Expect = 1.5e-18
Identity = 41/74 (55.41%), Postives = 54/74 (72.97%), Query Frame = 0


Query: 35  PRVTFCGYSIPHPSDNRVNIRVQTTGDPAREVLKDACQNLMVVCQHVRNTFDKAVLDFNL 94
           PRVT   Y+IPHPS  +VNIRVQTTGDPAREV KDACQ LM + +HVR+ FDKAV ++  
Sbjct: 52  PRVTVAAYTIPHPSLEQVNIRVQTTGDPAREVFKDACQELMQMNRHVRSVFDKAVAEYKD 111

Query: 95  TKPKEKPVGDINIK 109
            + +++   +  +K
Sbjct: 112 EQKRKEEAEEEELK 125

[Close]

BLAST of CsGy1G023035 vs. TAIR 10
Match: AT3G52090.1 (DNA-directed RNA polymerase, RBP11-like )

HSP 1 Score: 55.8 bits (133), Expect = 2.4e-08
Identity = 28/94 (29.79%), Postives = 51/94 (54.26%), Query Frame = 0


Query: 5   SFTDETK----STFSMADEDHTLANALRCTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG 64
           S+  +TK    ++F++  EDHT+ N +R  L++D  V F GY +PHP   ++ +R+ TT 
Sbjct: 20  SYDRDTKIINAASFTVEREDHTIGNIVRMQLHRDENVLFAGYQLPHPLKYKIIVRIHTTS 79

Query: 65  DPA-REVLKDACQNLMVVCQHVRNTFDKAVLDFN 94
             +  +    A  +L     +++N F+  V  F+
Sbjct: 80  QSSPMQAYNQAINDLDKELDYLKNQFEAEVAKFS 113

[Close]

BLAST of CsGy1G023035 vs. TAIR 10
Match: AT3G52090.2 (DNA-directed RNA polymerase, RBP11-like )

HSP 1 Score: 47.0 bits (110), Expect = 1.1e-05
Identity = 28/77 (36.36%), Postives = 43/77 (55.84%), Query Frame = 0


Query: 5  SFTDETK----STFSMADEDHTLANALRCTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG 64
          S+  +TK    ++F++  EDHT+ N +R  L++D  V F GY +PHP   ++ +R     
Sbjct: 20 SYDRDTKIINAASFTVEREDHTIGNIVRMQLHRDENVLFAGYQLPHPLKYKIIVR----- 79

Query: 65 DPAREVLKDACQNLMVV 78
          DP     KD  +NL VV
Sbjct: 80 DP-----KDWFRNLKVV 86

The following BLAST results are available for this feature:

BLAST of CsGy1G023035 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q5XK67	3.1e-16	44.44	DNA-directed RNA polymerases I and III subunit RPAC2 OS=Xenopus laevis OX=8355 G...	[more]
P97304	1.5e-15	39.60	DNA-directed RNA polymerases I and III subunit RPAC2 OS=Mus musculus OX=10090 GN...	[more]
P0DPB6	2.0e-15	41.94	DNA-directed RNA polymerases I and III subunit RPAC2 OS=Homo sapiens OX=9606 GN=...	[more]
Q6DRI4	2.6e-15	46.51	DNA-directed RNA polymerases I and III subunit RPAC2 OS=Danio rerio OX=7955 GN=p...	[more]
P28000	4.5e-15	45.78	DNA-directed RNA polymerases I and III subunit RPAC2 OS=Saccharomyces cerevisiae...	[more]

BLAST of CsGy1G023035 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004145267.1	5.62e-75	100.00	DNA-directed RNA polymerases I and III subunit RPAC2 [Cucumis sativus] >KGN65775...	[more]
XP_008457416.1	6.10e-70	95.37	PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC2 [Cucumis melo] >...	[more]
KAA0031779.1	3.53e-69	94.44	DNA-directed RNA polymerases I and III subunit RPAC2 [Cucumis melo var. makuwa]	[more]
XP_038893936.1	7.06e-66	93.52	DNA-directed RNA polymerases I and III subunit RPAC2 [Benincasa hispida]	[more]
XP_023522054.1	1.95e-63	89.81	DNA-directed RNA polymerases I and III subunit RPAC2-like [Cucurbita pepo subsp....	[more]

BLAST of CsGy1G023035 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LV21	2.72e-75	100.00	RNA_pol_L_2 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G527910...	[more]
A0A1S3C5G1	2.95e-70	95.37	DNA-directed RNA polymerases I and III subunit RPAC2 OS=Cucumis melo OX=3656 GN=...	[more]
A0A5D3BBZ7	2.95e-70	95.37	DNA-directed RNA polymerases I and III subunit RPAC2 OS=Cucumis melo var. makuwa...	[more]
A0A5A7SR68	1.71e-69	94.44	DNA-directed RNA polymerases I and III subunit RPAC2 OS=Cucumis melo var. makuwa...	[more]
A0A6J1D9Q8	9.43e-64	89.81	DNA-directed RNA polymerases I and III subunit RPAC2 OS=Momordica charantia OX=3...	[more]

BLAST of CsGy1G023035 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G29540.1	5.4e-32	57.41	RNApolymerase 14 kDa subunit	[more]
AT2G29540.2	5.4e-32	57.41	RNApolymerase 14 kDa subunit	[more]
AT2G29540.3	1.5e-18	55.41	RNApolymerase 14 kDa subunit	[more]
AT3G52090.1	2.4e-08	29.79	DNA-directed RNA polymerase, RBP11-like	[more]
AT3G52090.2	1.1e-05	36.36	DNA-directed RNA polymerase, RBP11-like	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 107..108
None	No IPR available	PANTHER	PTHR13946:SF37	SUBFAMILY NOT NAMED	coord: 1..97
None	No IPR available	PANTHER	PTHR13946	DNA-DIRECTED RNA POLYMERASE I,II,III	coord: 1..97
IPR009025	DNA-directed RNA polymerase, RBP11-like dimerisation domain	PFAM	PF13656	RNA_pol_L_2	coord: 12..83 e-value: 1.2E-28 score: 98.7
IPR036603	RNA polymerase, RBP11-like subunit	GENE3D	3.30.1360.10		coord: 2..94 e-value: 1.1E-33 score: 117.3
IPR036603	RNA polymerase, RBP11-like subunit	SUPERFAMILY	55257	RBP11-like subunits of RNA polymerase	coord: 8..92
IPR008193	DNA-directed RNA polymerase Rpb11, 13-16kDa subunit, conserved site	PROSITE	PS01154	RNA_POL_L_13KD	coord: 16..47
IPR033898	DNA-directed RNA polymerases I and III subunit AC19	CDD	cd07029	RNAP_I_III_AC19	coord: 2..85 e-value: 8.10564E-43 score: 133.126

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy1G023035.1	CsGy1G023035.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0005736	RNA polymerase I complex
cellular_component	GO:0005666	RNA polymerase III complex
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity
molecular_function	GO:0046983	protein dimerization activity