CsGy1G022560 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy1G022560
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	RING-type E3 ubiquitin transferase
Location	Gy14Chr1: 21562209 .. 21562809 (-)
RNA-Seq Expression	CsGy1G022560
Synteny	CsGy1G022560

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTCTTCCAAAAACGCATCACTGAAAAAAAGAGGAAACAAATGAATTCTCCGACGGCCGTATCTCCAACAACCATGCCTCCACCGCCTCCACCTCCTGACGAGTTACCCGTCGACGTCCTCTCAACTCTAGATCTCGACTTCCTAAATTTCGCAGGACTCTCCGCTCTGGCTTTGATGTTCCTCTACTTCGTTTTCACCTGCTGCGAACGGAAATACTGGAACCGAAACGGCGATATCGAAGGCGGACGGTTGCCGACGGTAACGATGGATGAATCTCCGGCTTCAGAAACAGAGGATTCACCGAGAAGACGGCCGTCTTCGAGGGCGGTGATTTCGACGAGGCTGTTTCAGTACGGAGTGGGAGGAGGAGTAATAGGGAAAAATGCGGATTGTTCGATTTGTTTGGATGAATTTACCGAAGGTGAGATTTGTCGAATGCTTCCGAAATGCAAACATGTTTTTCATCGGTTTTGTATCGATCGATGGCTTCCCAATGAACGCAATTGCCCTGTTTGTCGTTCCCCTGTTTATGTTCGTCTCGTTTATTCATTTCCTTCTTGAGCTTTTGTTTTCATTCAATTGTGAATAATTCTTTTTGTTT

mRNA sequence

CTCTTCCAAAAACGCATCACTGAAAAAAAGAGGAAACAAATGAATTCTCCGACGGCCGTATCTCCAACAACCATGCCTCCACCGCCTCCACCTCCTGACGAGTTACCCGTCGACGTCCTCTCAACTCTAGATCTCGACTTCCTAAATTTCGCAGGACTCTCCGCTCTGGCTTTGATGTTCCTCTACTTCGTTTTCACCTGCTGCGAACGGAAATACTGGAACCGAAACGGCGATATCGAAGGCGGACGGTTGCCGACGGTAACGATGGATGAATCTCCGGCTTCAGAAACAGAGGATTCACCGAGAAGACGGCCGTCTTCGAGGGCGGTGATTTCGACGAGGCTGTTTCAGTACGGAGTGGGAGGAGGAGTAATAGGGAAAAATGCGGATTGTTCGATTTGTTTGGATGAATTTACCGAAGGTGAGATTTGTCGAATGCTTCCGAAATGCAAACATGTTTTTCATCGGTTTTGTATCGATCGATGGCTTCCCAATGAACGCAATTGCCCTGTTTGTCGTTCCCCTGTTTATGTTCGTCTCGTTTATTCATTTCCTTCTTGAGCTTTTGTTTTCATTCAATTGTGAATAATTCTTTTTGTTT

Coding sequence (CDS)

ATGAATTCTCCGACGGCCGTATCTCCAACAACCATGCCTCCACCGCCTCCACCTCCTGACGAGTTACCCGTCGACGTCCTCTCAACTCTAGATCTCGACTTCCTAAATTTCGCAGGACTCTCCGCTCTGGCTTTGATGTTCCTCTACTTCGTTTTCACCTGCTGCGAACGGAAATACTGGAACCGAAACGGCGATATCGAAGGCGGACGGTTGCCGACGGTAACGATGGATGAATCTCCGGCTTCAGAAACAGAGGATTCACCGAGAAGACGGCCGTCTTCGAGGGCGGTGATTTCGACGAGGCTGTTTCAGTACGGAGTGGGAGGAGGAGTAATAGGGAAAAATGCGGATTGTTCGATTTGTTTGGATGAATTTACCGAAGGTGAGATTTGTCGAATGCTTCCGAAATGCAAACATGTTTTTCATCGGTTTTGTATCGATCGATGGCTTCCCAATGAACGCAATTGCCCTGTTTGTCGTTCCCCTGTTTATGTTCGTCTCGTTTATTCATTTCCTTCTTGA

Protein sequence

MNSPTAVSPTTMPPPPPPPDELPVDVLSTLDLDFLNFAGLSALALMFLYFVFTCCERKYWNRNGDIEGGRLPTVTMDESPASETEDSPRRRPSSRAVISTRLFQYGVGGGVIGKNADCSICLDEFTEGEICRMLPKCKHVFHRFCIDRWLPNERNCPVCRSPVYVRLVYSFPS*

Homology

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BLAST of CsGy1G022560 vs. ExPASy Swiss-Prot
Match: Q9LX93 (E3 ubiquitin-protein ligase RING1 OS=Arabidopsis thaliana OX=3702 GN=ATL55 PE=1 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 1.4e-15
Identity = 54/166 (32.53%), Postives = 74/166 (44.58%), Query Frame = 0


Query: 13  PPPPPPPDELPVDVLSTLDLDFLNFAGLSALALMFLYFVFTCCERKYWNRNGDIEGGRLP 72
           PPPPPPP    + +L    +  +    L    + FLY   T   R               
Sbjct: 27  PPPPPPPPPRELSLLLPTSICVVGSIILFLFLVFFLYLHITQQRRI-----------SAA 86

Query: 73  TVTMDESPASETEDSPRRRPSS---------------RAVISTRLFQYGVGGGVIGKNAD 132
           +VT  ++   E ED    R  S                A+ S  +  +  G G+I    +
Sbjct: 87  SVTPGDTNQQEDEDETEERDFSDFHHVWQIPTVGLHRSAINSITVVGFKKGEGII-DGTE 146

Query: 133 CSICLDEFTEGEICRMLPKCKHVFHRFCIDRWLPNERNCPVCRSPV 164
           CS+CL+EF E E  R+LPKC H FH  CID WL + +NCP+CR+PV
Sbjct: 147 CSVCLNEFEEDESLRLLPKCSHAFHLNCIDTWLLSHKNCPLCRAPV 180

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BLAST of CsGy1G022560 vs. ExPASy Swiss-Prot
Match: P0C041 (Putative RING-H2 finger protein ATL53 OS=Arabidopsis thaliana OX=3702 GN=ATL53 PE=3 SV=2)

HSP 1 Score: 79.7 bits (195), Expect = 3.6e-14
Identity = 57/165 (34.55%), Postives = 69/165 (41.82%), Query Frame = 0


Query: 13  PPPPPPPDELPVDVLSTLDLDFLNFAGLSALALMFLYFVFTCCERKY----WNRNGDIEG 72
           PPP      L   V S  +L  L  A     A  FL   +     KY           E 
Sbjct: 39  PPPISYEQFLNDGVASNPNLSPLVIAIFGIFATAFLLAAYYTLVSKYCANDTTNEAASES 98

Query: 73  GRLPTVTMDESPASETEDSPRRRPSSRAVISTRLFQYGVG--------GGVIGKNADCSI 132
           GR   +    SP    +D P    SS A +   L +  +G         G      DCSI
Sbjct: 99  GRSDIILDVNSPERGDQDDPFALESSTAGLDDTLIK-KIGFFKLKKHQNGFKINGTDCSI 158

Query: 133 CLDEFTEGEICRMLPKCKHVFHRFCIDRWLPNERNCPVCRSPVYV 166
           CL EF E E  R+LPKC H FH  CIDRWL +  NCP+CR+ + V
Sbjct: 159 CLGEFNEDESLRLLPKCNHTFHVVCIDRWLKSHSNCPLCRAKIIV 202

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BLAST of CsGy1G022560 vs. ExPASy Swiss-Prot
Match: Q9LF64 (RING-H2 finger protein ATL52 OS=Arabidopsis thaliana OX=3702 GN=ATL52 PE=2 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 5.1e-13
Identity = 53/160 (33.12%), Postives = 77/160 (48.12%), Query Frame = 0


Query: 15  PPPPPDELPVDVLSTLDLDF----LNFAGL--SALALMFLYFVFTCCERKYWNRNGDIEG 74
           PPPPP     D  S+    F    +   G+  SAL L+  Y + +    KY +R+     
Sbjct: 35  PPPPPSFFLDDDSSSSSSSFSPLLIALIGILTSALILVSYYTLIS----KYCHRHHQTSS 94

Query: 75  GRLPTVTMDESPASETEDSPRRRPSSRA-------VISTRLFQYGVGGGVIGKNADCSIC 134
                 T++ +   E   S  +R S+         + S  +++Y  G G +   +DCS+C
Sbjct: 95  SE----TLNLNHNGEGFFSSTQRISTNGDGLNESMIKSITVYKYKSGDGFV-DGSDCSVC 154

Query: 135 LDEFTEGEICRMLPKCKHVFHRFCIDRWLPNERNCPVCRS 162
           L EF E E  R+LPKC H FH  CID WL +  NCP+CR+
Sbjct: 155 LSEFEENESLRLLPKCNHAFHLPCIDTWLKSHSNCPLCRA 185

[Close]

BLAST of CsGy1G022560 vs. ExPASy Swiss-Prot
Match: Q9SJJ7 (RING-H2 finger protein ATL57 OS=Arabidopsis thaliana OX=3702 GN=ATL57 PE=2 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 6.7e-13
Identity = 47/154 (30.52%), Postives = 71/154 (46.10%), Query Frame = 0


Query: 8   SPTTMPPPPPPPDELPVDVLSTLDLDFLNFAGLSALALMFLYFVFTCCERKYWNRNGDIE 67
           SP T  PPP PP  L   +  T+ +  +    +   ++ F +F  +       +      
Sbjct: 32  SPLTPTPPPQPPSALDSTMALTIFILLVALFFMGFFSVYFRHFADSSSSTVDISSMPRTR 91

Query: 68  GGRLPTVTMDESPASETEDSPRRRPSSRAVISTRLFQYGVGGGVIGKNADCSICLDEFTE 127
             R+    +  S       S RR   S+AV S  +++Y        +N DC ICL +F E
Sbjct: 92  SSRMSPRRLSTSVVVSRPYSFRRGLDSQAVRSLPVYRYTKAAK--QRNEDCVICLSDFEE 151

Query: 128 GEICRMLPKCKHVFHRFCIDRWLPNERNCPVCRS 162
           GE  +++P C HVFH  C+D WL +   CP+CRS
Sbjct: 152 GETVKVIPHCGHVFHVDCVDTWLSSYVTCPLCRS 183

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BLAST of CsGy1G022560 vs. ExPASy Swiss-Prot
Match: O80927 (RING-H2 finger protein ATL33 OS=Arabidopsis thaliana OX=3702 GN=ATL33 PE=2 SV=2)

HSP 1 Score: 72.8 bits (177), Expect = 4.3e-12
Identity = 50/157 (31.85%), Postives = 71/157 (45.22%), Query Frame = 0


Query: 13  PPPPPPPDELPVDVLSTLDLDFLNFAGLSALALMFLYFVFTCCERKYWNRNG---DIEGG 72
           PPPP P     +D L+ L L F+  A ++  AL++  F    C     N +         
Sbjct: 46  PPPPFPAPPRSID-LTPLKLIFVVIAFVAVPALVYALFFNGPCSSSRRNSSSSRTSSSSD 105

Query: 73  RLPTVTMDESPASETEDSPRRRPSSRAVISTRLFQYGVGGGVIGKNADCSICLDEFTEGE 132
             P  T+D  P +ET  +           S   F        IG   +CS+CL  FT+ +
Sbjct: 106 DTPHATVDTPPITETTVTSE---------SGGKFHKDTHSKEIGN--ECSVCLMVFTDSD 165

Query: 133 ICRMLPKCKHVFHRFCIDRWLPNERNCPVCRSPVYVR 167
             R L +CKH FH  CI+ WL +  NCP+CR+ V V+
Sbjct: 166 ELRQLSECKHAFHVLCIETWLKDHPNCPICRTDVSVK 190

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BLAST of CsGy1G022560 vs. NCBI nr
Match: XP_004151031.2 (RING-H2 finger protein ATL39 [Cucumis sativus])

HSP 1 Score: 365 bits (938), Expect = 9.07e-128
Identity = 173/173 (100.00%), Postives = 173/173 (100.00%), Query Frame = 0


Query: 1   MNSPTAVSPTTMPPPPPPPDELPVDVLSTLDLDFLNFAGLSALALMFLYFVFTCCERKYW 60
           MNSPTAVSPTTMPPPPPPPDELPVDVLSTLDLDFLNFAGLSALALMFLYFVFTCCERKYW
Sbjct: 1   MNSPTAVSPTTMPPPPPPPDELPVDVLSTLDLDFLNFAGLSALALMFLYFVFTCCERKYW 60

Query: 61  NRNGDIEGGRLPTVTMDESPASETEDSPRRRPSSRAVISTRLFQYGVGGGVIGKNADCSI 120
           NRNGDIEGGRLPTVTMDESPASETEDSPRRRPSSRAVISTRLFQYGVGGGVIGKNADCSI
Sbjct: 61  NRNGDIEGGRLPTVTMDESPASETEDSPRRRPSSRAVISTRLFQYGVGGGVIGKNADCSI 120

Query: 121 CLDEFTEGEICRMLPKCKHVFHRFCIDRWLPNERNCPVCRSPVYVRLVYSFPS 173
           CLDEFTEGEICRMLPKCKHVFHRFCIDRWLPNERNCPVCRSPVYVRLVYSFPS
Sbjct: 121 CLDEFTEGEICRMLPKCKHVFHRFCIDRWLPNERNCPVCRSPVYVRLVYSFPS 173

[Close]

BLAST of CsGy1G022560 vs. NCBI nr
Match: KAE8653247.1 (hypothetical protein Csa_019633 [Cucumis sativus])

HSP 1 Score: 365 bits (938), Expect = 9.76e-126
Identity = 173/173 (100.00%), Postives = 173/173 (100.00%), Query Frame = 0


Query: 1   MNSPTAVSPTTMPPPPPPPDELPVDVLSTLDLDFLNFAGLSALALMFLYFVFTCCERKYW 60
           MNSPTAVSPTTMPPPPPPPDELPVDVLSTLDLDFLNFAGLSALALMFLYFVFTCCERKYW
Sbjct: 134 MNSPTAVSPTTMPPPPPPPDELPVDVLSTLDLDFLNFAGLSALALMFLYFVFTCCERKYW 193

Query: 61  NRNGDIEGGRLPTVTMDESPASETEDSPRRRPSSRAVISTRLFQYGVGGGVIGKNADCSI 120
           NRNGDIEGGRLPTVTMDESPASETEDSPRRRPSSRAVISTRLFQYGVGGGVIGKNADCSI
Sbjct: 194 NRNGDIEGGRLPTVTMDESPASETEDSPRRRPSSRAVISTRLFQYGVGGGVIGKNADCSI 253

Query: 121 CLDEFTEGEICRMLPKCKHVFHRFCIDRWLPNERNCPVCRSPVYVRLVYSFPS 173
           CLDEFTEGEICRMLPKCKHVFHRFCIDRWLPNERNCPVCRSPVYVRLVYSFPS
Sbjct: 254 CLDEFTEGEICRMLPKCKHVFHRFCIDRWLPNERNCPVCRSPVYVRLVYSFPS 306

[Close]

BLAST of CsGy1G022560 vs. NCBI nr
Match: XP_008457570.2 (PREDICTED: RING-H2 finger protein ATL39-like [Cucumis melo] >TYJ97406.1 RING-H2 finger protein ATL39-like [Cucumis melo var. makuwa])

HSP 1 Score: 334 bits (856), Expect = 2.91e-115
Identity = 157/173 (90.75%), Postives = 165/173 (95.38%), Query Frame = 0


Query: 1   MNSPTAVSPTTMPPPPPPPDELPVDVLSTLDLDFLNFAGLSALALMFLYFVFTCCERKYW 60
           MNSPTAVSPTTMP PPPPPD+LPV  LS LDLDFLN AGLSALA+MF+YF+FTC ERK+W
Sbjct: 1   MNSPTAVSPTTMPSPPPPPDDLPVGFLSALDLDFLNVAGLSALAMMFIYFIFTCYERKFW 60

Query: 61  NRNGDIEGGRLPTVTMDESPASETEDSPRRRPSSRAVISTRLFQYGVGGGVIGKNADCSI 120
           NRNGDIEGG+LP+VTMDESPASET DS RRRPSSRAVISTRLFQYGVGGGVIGKNADCSI
Sbjct: 61  NRNGDIEGGQLPSVTMDESPASETGDSSRRRPSSRAVISTRLFQYGVGGGVIGKNADCSI 120

Query: 121 CLDEFTEGEICRMLPKCKHVFHRFCIDRWLPNERNCPVCRSPVYVRLVYSFPS 173
           CLDEFTEGEICRMLPKCKHVFHRFCID+WLPNERNCPVCRSPVYVRLVYSFPS
Sbjct: 121 CLDEFTEGEICRMLPKCKHVFHRFCIDQWLPNERNCPVCRSPVYVRLVYSFPS 173

[Close]

BLAST of CsGy1G022560 vs. NCBI nr
Match: KAA0067737.1 (RING-H2 finger protein ATL39-like [Cucumis melo var. makuwa])

HSP 1 Score: 333 bits (854), Expect = 5.87e-115
Identity = 157/173 (90.75%), Postives = 164/173 (94.80%), Query Frame = 0


Query: 1   MNSPTAVSPTTMPPPPPPPDELPVDVLSTLDLDFLNFAGLSALALMFLYFVFTCCERKYW 60
           MNSPTAVSPTTMP PPPPPD+LPV  LS LDLDFLN AGLSALA+MF+YF+FTC ERK+W
Sbjct: 1   MNSPTAVSPTTMPSPPPPPDDLPVGFLSALDLDFLNVAGLSALAMMFIYFIFTCYERKFW 60

Query: 61  NRNGDIEGGRLPTVTMDESPASETEDSPRRRPSSRAVISTRLFQYGVGGGVIGKNADCSI 120
           NRNGDIEGGRLP+ TMDESPASET DS RRRPSSRAVISTRLFQYGVGGGVIGKNADCSI
Sbjct: 61  NRNGDIEGGRLPSETMDESPASETGDSSRRRPSSRAVISTRLFQYGVGGGVIGKNADCSI 120

Query: 121 CLDEFTEGEICRMLPKCKHVFHRFCIDRWLPNERNCPVCRSPVYVRLVYSFPS 173
           CLDEFTEGEICRMLPKCKHVFHRFCID+WLPNERNCPVCRSPVYVRLVYSFPS
Sbjct: 121 CLDEFTEGEICRMLPKCKHVFHRFCIDQWLPNERNCPVCRSPVYVRLVYSFPS 173

[Close]

BLAST of CsGy1G022560 vs. NCBI nr
Match: XP_038895799.1 (E3 ubiquitin-protein ligase RING1-like [Benincasa hispida])

HSP 1 Score: 266 bits (680), Expect = 1.34e-88
Identity = 130/163 (79.75%), Postives = 143/163 (87.73%), Query Frame = 0


Query: 12  MPPPPPPPDELPVDVLSTLDLDFLNFAGLSALALMFLYFVFTCCERKYWNRNGDIEGGRL 71
           MPPPPP P EL VDVLSTLDLDFLNFAGLSALALM +YF+FTC ERKYWNRNGDIEGGR 
Sbjct: 1   MPPPPPQPAELSVDVLSTLDLDFLNFAGLSALALMIVYFIFTCYERKYWNRNGDIEGGRP 60

Query: 72  PTV-TMDESPASETEDSPRRRPSSRAVISTRLFQYGVGGGVIGKNADCSICLDEFTEGEI 131
           P+  T+ E  ASE  DS  RR +S AVIST+LFQYG GG ++GKNADCSICLDEF+EGEI
Sbjct: 61  PSSGTVAEPLASEAGDSSSRRRASTAVISTKLFQYGEGG-LMGKNADCSICLDEFSEGEI 120

Query: 132 CRMLPKCKHVFHRFCIDRWLPNERNCPVCRSPVYVRLVYSFPS 173
           CRMLPKCKHVFHRFCID+WLPNER+CPVCRSPV+VR+VYS PS
Sbjct: 121 CRMLPKCKHVFHRFCIDQWLPNERHCPVCRSPVHVRIVYSNPS 162

[Close]

BLAST of CsGy1G022560 vs. ExPASy TrEMBL
Match: A0A0A0M0H1 (RING-type E3 ubiquitin transferase OS=Cucumis sativus OX=3659 GN=Csa_1G515990 PE=3 SV=1)

HSP 1 Score: 365 bits (938), Expect = 4.39e-128
Identity = 173/173 (100.00%), Postives = 173/173 (100.00%), Query Frame = 0


Query: 1   MNSPTAVSPTTMPPPPPPPDELPVDVLSTLDLDFLNFAGLSALALMFLYFVFTCCERKYW 60
           MNSPTAVSPTTMPPPPPPPDELPVDVLSTLDLDFLNFAGLSALALMFLYFVFTCCERKYW
Sbjct: 1   MNSPTAVSPTTMPPPPPPPDELPVDVLSTLDLDFLNFAGLSALALMFLYFVFTCCERKYW 60

Query: 61  NRNGDIEGGRLPTVTMDESPASETEDSPRRRPSSRAVISTRLFQYGVGGGVIGKNADCSI 120
           NRNGDIEGGRLPTVTMDESPASETEDSPRRRPSSRAVISTRLFQYGVGGGVIGKNADCSI
Sbjct: 61  NRNGDIEGGRLPTVTMDESPASETEDSPRRRPSSRAVISTRLFQYGVGGGVIGKNADCSI 120

Query: 121 CLDEFTEGEICRMLPKCKHVFHRFCIDRWLPNERNCPVCRSPVYVRLVYSFPS 173
           CLDEFTEGEICRMLPKCKHVFHRFCIDRWLPNERNCPVCRSPVYVRLVYSFPS
Sbjct: 121 CLDEFTEGEICRMLPKCKHVFHRFCIDRWLPNERNCPVCRSPVYVRLVYSFPS 173

[Close]

BLAST of CsGy1G022560 vs. ExPASy TrEMBL
Match: A0A5D3BEF0 (RING-H2 finger protein ATL39-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold194G002260 PE=4 SV=1)

HSP 1 Score: 334 bits (856), Expect = 1.41e-115
Identity = 157/173 (90.75%), Postives = 165/173 (95.38%), Query Frame = 0


Query: 1   MNSPTAVSPTTMPPPPPPPDELPVDVLSTLDLDFLNFAGLSALALMFLYFVFTCCERKYW 60
           MNSPTAVSPTTMP PPPPPD+LPV  LS LDLDFLN AGLSALA+MF+YF+FTC ERK+W
Sbjct: 1   MNSPTAVSPTTMPSPPPPPDDLPVGFLSALDLDFLNVAGLSALAMMFIYFIFTCYERKFW 60

Query: 61  NRNGDIEGGRLPTVTMDESPASETEDSPRRRPSSRAVISTRLFQYGVGGGVIGKNADCSI 120
           NRNGDIEGG+LP+VTMDESPASET DS RRRPSSRAVISTRLFQYGVGGGVIGKNADCSI
Sbjct: 61  NRNGDIEGGQLPSVTMDESPASETGDSSRRRPSSRAVISTRLFQYGVGGGVIGKNADCSI 120

Query: 121 CLDEFTEGEICRMLPKCKHVFHRFCIDRWLPNERNCPVCRSPVYVRLVYSFPS 173
           CLDEFTEGEICRMLPKCKHVFHRFCID+WLPNERNCPVCRSPVYVRLVYSFPS
Sbjct: 121 CLDEFTEGEICRMLPKCKHVFHRFCIDQWLPNERNCPVCRSPVYVRLVYSFPS 173

[Close]

BLAST of CsGy1G022560 vs. ExPASy TrEMBL
Match: A0A1S3C5T1 (RING-H2 finger protein ATL39-like OS=Cucumis melo OX=3656 GN=LOC103497235 PE=4 SV=1)

HSP 1 Score: 334 bits (856), Expect = 1.41e-115
Identity = 157/173 (90.75%), Postives = 165/173 (95.38%), Query Frame = 0


Query: 1   MNSPTAVSPTTMPPPPPPPDELPVDVLSTLDLDFLNFAGLSALALMFLYFVFTCCERKYW 60
           MNSPTAVSPTTMP PPPPPD+LPV  LS LDLDFLN AGLSALA+MF+YF+FTC ERK+W
Sbjct: 1   MNSPTAVSPTTMPSPPPPPDDLPVGFLSALDLDFLNVAGLSALAMMFIYFIFTCYERKFW 60

Query: 61  NRNGDIEGGRLPTVTMDESPASETEDSPRRRPSSRAVISTRLFQYGVGGGVIGKNADCSI 120
           NRNGDIEGG+LP+VTMDESPASET DS RRRPSSRAVISTRLFQYGVGGGVIGKNADCSI
Sbjct: 61  NRNGDIEGGQLPSVTMDESPASETGDSSRRRPSSRAVISTRLFQYGVGGGVIGKNADCSI 120

Query: 121 CLDEFTEGEICRMLPKCKHVFHRFCIDRWLPNERNCPVCRSPVYVRLVYSFPS 173
           CLDEFTEGEICRMLPKCKHVFHRFCID+WLPNERNCPVCRSPVYVRLVYSFPS
Sbjct: 121 CLDEFTEGEICRMLPKCKHVFHRFCIDQWLPNERNCPVCRSPVYVRLVYSFPS 173

[Close]

BLAST of CsGy1G022560 vs. ExPASy TrEMBL
Match: A0A5A7VKM2 (RING-H2 finger protein ATL39-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold352G00570 PE=4 SV=1)

HSP 1 Score: 333 bits (854), Expect = 2.84e-115
Identity = 157/173 (90.75%), Postives = 164/173 (94.80%), Query Frame = 0


Query: 1   MNSPTAVSPTTMPPPPPPPDELPVDVLSTLDLDFLNFAGLSALALMFLYFVFTCCERKYW 60
           MNSPTAVSPTTMP PPPPPD+LPV  LS LDLDFLN AGLSALA+MF+YF+FTC ERK+W
Sbjct: 1   MNSPTAVSPTTMPSPPPPPDDLPVGFLSALDLDFLNVAGLSALAMMFIYFIFTCYERKFW 60

Query: 61  NRNGDIEGGRLPTVTMDESPASETEDSPRRRPSSRAVISTRLFQYGVGGGVIGKNADCSI 120
           NRNGDIEGGRLP+ TMDESPASET DS RRRPSSRAVISTRLFQYGVGGGVIGKNADCSI
Sbjct: 61  NRNGDIEGGRLPSETMDESPASETGDSSRRRPSSRAVISTRLFQYGVGGGVIGKNADCSI 120

Query: 121 CLDEFTEGEICRMLPKCKHVFHRFCIDRWLPNERNCPVCRSPVYVRLVYSFPS 173
           CLDEFTEGEICRMLPKCKHVFHRFCID+WLPNERNCPVCRSPVYVRLVYSFPS
Sbjct: 121 CLDEFTEGEICRMLPKCKHVFHRFCIDQWLPNERNCPVCRSPVYVRLVYSFPS 173

[Close]

BLAST of CsGy1G022560 vs. ExPASy TrEMBL
Match: A0A6J1I603 (RING-type E3 ubiquitin transferase OS=Cucurbita maxima OX=3661 GN=LOC111469514 PE=3 SV=1)

HSP 1 Score: 212 bits (540), Expect = 9.66e-68
Identity = 106/158 (67.09%), Postives = 121/158 (76.58%), Query Frame = 0


Query: 16  PPPPDELPVDVLSTLDLDFLNFAGLSALALMFLYFVFTCCERKYWNRNGDIEGGRLPTVT 75
           PPPP EL VDVLST+DLDFLNFAGL  LA+  +YF++T  E KYWNR+ DIEGGR     
Sbjct: 3   PPPPPELSVDVLSTVDLDFLNFAGLFILAVTIMYFIYTYYEHKYWNRSRDIEGGRSAATA 62

Query: 76  MDESPASETEDSPRRRPSSRAVISTRLFQYGVGGGVIGKNADCSICLDEFTEGEICRMLP 135
              S  S  ED    R  + AVISTRLFQYG  G + GKNADCSICLDEF EGEICRMLP
Sbjct: 63  ---SVGSSGED----RRWATAVISTRLFQYGERG-MEGKNADCSICLDEFVEGEICRMLP 122

Query: 136 KCKHVFHRFCIDRWLPNERNCPVCRSPVYVRLVYSFPS 173
           KCKHVFHRFCID+WLPNER+CP+CRSPV+VR +++  S
Sbjct: 123 KCKHVFHRFCIDQWLPNERHCPLCRSPVHVRFIFAHRS 152

[Close]

BLAST of CsGy1G022560 vs. TAIR 10
Match: AT4G33565.1 (RING/U-box superfamily protein )

HSP 1 Score: 90.1 bits (222), Expect = 1.9e-18
Identity = 51/135 (37.78%), Postives = 72/135 (53.33%), Query Frame = 0


Query: 41  SALALMFLYFVFTCCERKYWNRNGDIEGGRLPTVTMDES-------PASETEDSP----R 100
           S +  +FL  +   C + Y+ R   I   R    +M+E+       PA    D P    R
Sbjct: 131 SIITTLFLLTLLVLCFKFYYRRRRSITTSR--RWSMEEARNWDFDGPAPVIVDHPIWHIR 190

Query: 101 RRPSSRAVIST-RLFQYGVGGGVIGKNADCSICLDEFTEGEICRMLPKCKHVFHRFCIDR 160
               +  VIS+ ++ QY    GV+ +  DCS+CL EF E E  R+LPKCKH FH +CID 
Sbjct: 191 TIGLNPTVISSIKVCQYSKKDGVV-EGTDCSVCLSEFEEEETLRLLPKCKHAFHLYCIDT 250

Query: 161 WLPNERNCPVCRSPV 164
           WL +  NCP+CR+P+
Sbjct: 251 WLRSHTNCPLCRAPI 262

[Close]

BLAST of CsGy1G022560 vs. TAIR 10
Match: AT5G10380.1 (RING/U-box superfamily protein )

HSP 1 Score: 84.3 bits (207), Expect = 1.0e-16
Identity = 54/166 (32.53%), Postives = 74/166 (44.58%), Query Frame = 0


Query: 13  PPPPPPPDELPVDVLSTLDLDFLNFAGLSALALMFLYFVFTCCERKYWNRNGDIEGGRLP 72
           PPPPPPP    + +L    +  +    L    + FLY   T   R               
Sbjct: 27  PPPPPPPPPRELSLLLPTSICVVGSIILFLFLVFFLYLHITQQRRI-----------SAA 86

Query: 73  TVTMDESPASETEDSPRRRPSS---------------RAVISTRLFQYGVGGGVIGKNAD 132
           +VT  ++   E ED    R  S                A+ S  +  +  G G+I    +
Sbjct: 87  SVTPGDTNQQEDEDETEERDFSDFHHVWQIPTVGLHRSAINSITVVGFKKGEGII-DGTE 146

Query: 133 CSICLDEFTEGEICRMLPKCKHVFHRFCIDRWLPNERNCPVCRSPV 164
           CS+CL+EF E E  R+LPKC H FH  CID WL + +NCP+CR+PV
Sbjct: 147 CSVCLNEFEEDESLRLLPKCSHAFHLNCIDTWLLSHKNCPLCRAPV 180

[Close]

BLAST of CsGy1G022560 vs. TAIR 10
Match: AT4G17905.1 (RING/U-box superfamily protein )

HSP 1 Score: 79.7 bits (195), Expect = 2.5e-15
Identity = 57/165 (34.55%), Postives = 69/165 (41.82%), Query Frame = 0


Query: 13  PPPPPPPDELPVDVLSTLDLDFLNFAGLSALALMFLYFVFTCCERKY----WNRNGDIEG 72
           PPP      L   V S  +L  L  A     A  FL   +     KY           E 
Sbjct: 39  PPPISYEQFLNDGVASNPNLSPLVIAIFGIFATAFLLAAYYTLVSKYCANDTTNEAASES 98

Query: 73  GRLPTVTMDESPASETEDSPRRRPSSRAVISTRLFQYGVG--------GGVIGKNADCSI 132
           GR   +    SP    +D P    SS A +   L +  +G         G      DCSI
Sbjct: 99  GRSDIILDVNSPERGDQDDPFALESSTAGLDDTLIK-KIGFFKLKKHQNGFKINGTDCSI 158

Query: 133 CLDEFTEGEICRMLPKCKHVFHRFCIDRWLPNERNCPVCRSPVYV 166
           CL EF E E  R+LPKC H FH  CIDRWL +  NCP+CR+ + V
Sbjct: 159 CLGEFNEDESLRLLPKCNHTFHVVCIDRWLKSHSNCPLCRAKIIV 202

[Close]

BLAST of CsGy1G022560 vs. TAIR 10
Match: AT5G17600.1 (RING/U-box superfamily protein )

HSP 1 Score: 75.9 bits (185), Expect = 3.6e-14
Identity = 53/160 (33.12%), Postives = 77/160 (48.12%), Query Frame = 0


Query: 15  PPPPPDELPVDVLSTLDLDF----LNFAGL--SALALMFLYFVFTCCERKYWNRNGDIEG 74
           PPPPP     D  S+    F    +   G+  SAL L+  Y + +    KY +R+     
Sbjct: 35  PPPPPSFFLDDDSSSSSSSFSPLLIALIGILTSALILVSYYTLIS----KYCHRHHQTSS 94

Query: 75  GRLPTVTMDESPASETEDSPRRRPSSRA-------VISTRLFQYGVGGGVIGKNADCSIC 134
                 T++ +   E   S  +R S+         + S  +++Y  G G +   +DCS+C
Sbjct: 95  SE----TLNLNHNGEGFFSSTQRISTNGDGLNESMIKSITVYKYKSGDGFV-DGSDCSVC 154

Query: 135 LDEFTEGEICRMLPKCKHVFHRFCIDRWLPNERNCPVCRS 162
           L EF E E  R+LPKC H FH  CID WL +  NCP+CR+
Sbjct: 155 LSEFEENESLRLLPKCNHAFHLPCIDTWLKSHSNCPLCRA 185

[Close]

BLAST of CsGy1G022560 vs. TAIR 10
Match: AT2G27940.1 (RING/U-box superfamily protein )

HSP 1 Score: 75.5 bits (184), Expect = 4.8e-14
Identity = 47/154 (30.52%), Postives = 71/154 (46.10%), Query Frame = 0


Query: 8   SPTTMPPPPPPPDELPVDVLSTLDLDFLNFAGLSALALMFLYFVFTCCERKYWNRNGDIE 67
           SP T  PPP PP  L   +  T+ +  +    +   ++ F +F  +       +      
Sbjct: 32  SPLTPTPPPQPPSALDSTMALTIFILLVALFFMGFFSVYFRHFADSSSSTVDISSMPRTR 91

Query: 68  GGRLPTVTMDESPASETEDSPRRRPSSRAVISTRLFQYGVGGGVIGKNADCSICLDEFTE 127
             R+    +  S       S RR   S+AV S  +++Y        +N DC ICL +F E
Sbjct: 92  SSRMSPRRLSTSVVVSRPYSFRRGLDSQAVRSLPVYRYTKAAK--QRNEDCVICLSDFEE 151

Query: 128 GEICRMLPKCKHVFHRFCIDRWLPNERNCPVCRS 162
           GE  +++P C HVFH  C+D WL +   CP+CRS
Sbjct: 152 GETVKVIPHCGHVFHVDCVDTWLSSYVTCPLCRS 183

The following BLAST results are available for this feature:

BLAST of CsGy1G022560 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LX93	1.4e-15	32.53	E3 ubiquitin-protein ligase RING1 OS=Arabidopsis thaliana OX=3702 GN=ATL55 PE=1 ...	[more]
P0C041	3.6e-14	34.55	Putative RING-H2 finger protein ATL53 OS=Arabidopsis thaliana OX=3702 GN=ATL53 P...	[more]
Q9LF64	5.1e-13	33.13	RING-H2 finger protein ATL52 OS=Arabidopsis thaliana OX=3702 GN=ATL52 PE=2 SV=1	[more]
Q9SJJ7	6.7e-13	30.52	RING-H2 finger protein ATL57 OS=Arabidopsis thaliana OX=3702 GN=ATL57 PE=2 SV=1	[more]
O80927	4.3e-12	31.85	RING-H2 finger protein ATL33 OS=Arabidopsis thaliana OX=3702 GN=ATL33 PE=2 SV=2	[more]

BLAST of CsGy1G022560 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004151031.2	9.07e-128	100.00	RING-H2 finger protein ATL39 [Cucumis sativus]	[more]
KAE8653247.1	9.76e-126	100.00	hypothetical protein Csa_019633 [Cucumis sativus]	[more]
XP_008457570.2	2.91e-115	90.75	PREDICTED: RING-H2 finger protein ATL39-like [Cucumis melo] >TYJ97406.1 RING-H2 ...	[more]
KAA0067737.1	5.87e-115	90.75	RING-H2 finger protein ATL39-like [Cucumis melo var. makuwa]	[more]
XP_038895799.1	1.34e-88	79.75	E3 ubiquitin-protein ligase RING1-like [Benincasa hispida]	[more]

BLAST of CsGy1G022560 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0M0H1	4.39e-128	100.00	RING-type E3 ubiquitin transferase OS=Cucumis sativus OX=3659 GN=Csa_1G515990 PE...	[more]
A0A5D3BEF0	1.41e-115	90.75	RING-H2 finger protein ATL39-like OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A1S3C5T1	1.41e-115	90.75	RING-H2 finger protein ATL39-like OS=Cucumis melo OX=3656 GN=LOC103497235 PE=4 S...	[more]
A0A5A7VKM2	2.84e-115	90.75	RING-H2 finger protein ATL39-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A6J1I603	9.66e-68	67.09	RING-type E3 ubiquitin transferase OS=Cucurbita maxima OX=3661 GN=LOC111469514 P...	[more]

BLAST of CsGy1G022560 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G33565.1	1.9e-18	37.78	RING/U-box superfamily protein	[more]
AT5G10380.1	1.0e-16	32.53	RING/U-box superfamily protein	[more]
AT4G17905.1	2.5e-15	34.55	RING/U-box superfamily protein	[more]
AT5G17600.1	3.6e-14	33.13	RING/U-box superfamily protein	[more]
AT2G27940.1	4.8e-14	30.52	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 118..159 e-value: 1.0E-7 score: 41.7
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 117..160 e-value: 4.8E-13 score: 49.2
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 118..160 score: 12.99088
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 72..164 e-value: 3.7E-20 score: 73.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 8..22
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 70..94
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..22
None	No IPR available	PANTHER	PTHR45676:SF73	E3 UBIQUITIN-PROTEIN LIGASE RING1-RELATED	coord: 40..164
None	No IPR available	CDD	cd16486	mRING-H2-C3H2C2D_ZSWM2	coord: 118..160 e-value: 1.01853E-15 score: 65.3257
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 112..166
IPR044675	E3 ubiquitin-protein ligase RING1-like	PANTHER	PTHR45676	RING-H2 FINGER PROTEIN ATL51-RELATED	coord: 40..164

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy1G022560.1	CsGy1G022560.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016567	protein ubiquitination
cellular_component	GO:0016021	integral component of membrane