CsGy1G021170 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy1G021170
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	Coatomer subunit zeta
Location	Gy14Chr1: 19882445 .. 19886232 (+)
RNA-Seq Expression	CsGy1G021170
Synteny	CsGy1G021170

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ACAGTTTAATTATGGAAAAGTAAGGGTCTCGTTTTAAATTTGAGTTAACTTTGGGGACCGGCCGGAGTCGACGAAGTATTTGGACAGAGTCTCCTTTTTTCGATTTTCGTTCTCTTGTTTCTCAATAACGCGAGAGAGATCCGACGGCGTTCGAATTCCCAAAGAATATATTCCCGGGAAATTTTTTCACAAATCTAATGGTCAGTTTAGTTCTTCTTTTTCAACTGATGATTTCTTCGTTCCTAACTTCAATTACTTATTCGTCGGATTCAGCAATTAGACTTGTTTTCTAGTAACTACCTATGGATTTTCGGTGATGAACATTGCTATTAGGATTATGGAGTTGTTAGTTATGTTCGAAATTTTTTGACATTTAATTGGTTGATGCCTTAGTAGATCTGAGTCCTGAGCTCATTTTAGCAATGTGTTCGTAAGCACAGATCGATCTCTGAACTTACTAAGTTGATTCGAATTTTGTTAATTTCTTCGGAAGATTTGGATTGCATTTTATTTCGATTCAATACTTTAGTGGAAATGCTTGAAGCAGGTAGGAAGATCTTCATTACTTCCTTCGTATGGAGTTTGTGATTTGTCTACGAATCTAGCCGATGACTCGAAGATTTTTATCTTTCGTATGGACAAATCTTAAATTAAAATTAATCGCGCGTGATGAGATTTTTCTTCTCAGTTCATTTTATTTCGATTCAAGACTTTAGTGGAAATGCTTGAAGCTGGTAGGAAGAACTTGATTTTTATAGCATCTGCTCTATAAGAATCTGTGTGAAGCTTTTTCAGTAGGCTACTTAATTTAGAAATTCGATGTACCTTAATCTGCTAGTTTCTGAATGTGCTTCGTGTCTTAGCTTTGTATGTTTCTCAGACAAGATTGATGTGACAACAATTATATAGGGAAAAAAACCATCCGGTTCACCAAAAAGGTCGTCTACCTCCTTAATCCAAACATGTTTGCTTTATTATATGCAGGAATCTTGCCCTGCCATTAAAAGCATTCTTCTTTTGGATTCTGAAGGGAAGCGTGTAGCTGTCAAGTATTATTCTGATGACTGGCCTACAAATAGTGCAAAGGAAGCTTTTGAGAAATCCGTTTTCATCAAAACTCAGAAGACTAATGCTCGAACAGAGGGTAGATACCTTTTCATATATTGGGTTTTAACTGTTTTCTGTGAAATTGTGCATCCTTAATCGTGTTAGCTTCTCCTACTTAAGTCAATTTCAATGTCCTTTTAGTCACTGTTAAGAAATTTCAGAATCTTTCAGTAGTCAAATTATTAGTTGGTTTATCCATGATCGTTGTCCTTTGCCATGAGACTAAGAATTATTTTTTCAATCTCATTCTCATGGCTGTCAGTAGCTGGGTTAGTCATTATCTGTTTCGATCTCTGCATTCTTCTATTGGACCATCTCCCAACACTTTGTTTCTTTATGCCTTACATGGTCGGTGAGTTTCTTCTCTACGTTCTAACATTCAATTCACTTTAACAGCGGAGATAGCAATGTTTGAGAGCAATATAGTGGTTTACAAGTTTGCTCAAGACCTTCATTTTTTTGTCACGGGTGGAGAAGATGAAAATGAACTCATTTTAGCATCCGTTCTTCAGGGTTTTTTTGATGCTGTGGGCATTCTTCTTAGGTCTTGATACTATTTATATATTAATTTTGGATCCTTATGCACTGGCTTGATATTAGTGTTCTCGATAGATATTTATTTTTGTTTCTTGTACTCCAGGGGTAATGTAGAAAAGAAGGAGGCACTTGAGAACTTGGACCTCATTTTACTGTGTCTCGATGAAATTATCGATGGAGGGTATATCTCATATGCTCTTTCCTTATTACCCATTCTATGCATTTCAATTGTGTGACTTGTTTTTCCATTTCCTTCTATTGATAATTGATCTCTGTATCTTGATTGTGCCACTCTTTTTACTCACCCTCTCTAAGTTGATGCCTGTGTCCATTCTTGCTAGACAAATTGTGAACATGAAAATTGAAGTATGAGTTGTGGATGATTATATATCAAGAATCCAAGGTTGTAGTAATGTCATTACTCGTCAGGAAAGTAGTTGTAGTTTCATGAATTTATGTGGAAAATAAGTTGTTGACTAATGAGTAATATGCTTTCATTGTAGTTGCATAATTCCTATAGAATAGTCTAAGTTATTCTCTCCTGTTCAAGTACTGGCTATTTTGTAGTTTGTGGTTTGTTGCTCGATAACAGATTTGGTTGTCCCACATCTTCATTTCGATATGTCACTATTGTTTACATAAATTGATGGACACACTACATCCGATTATGTTGAAAGTGGAGATGACATTGTGTAACGTGAGGCATAGATTTGAATAAGCTAGAACCGTAGAGCATTGCTATAATTTGTTTTTGATGGAAAGACTACAAACCATTTAAATTTGATTGATTTATTTTCTCCCAAGATTGTTCAGAAATAAATTTCTTTTCATCTGAATATTCAAGGTTTGATGTTTTCATTGCCTCGTGTGCGGGATTATTGTCATTATGCTTTTCTGAAATTGCAATTTAGCAGTTCTTAACCTTTTCATAAACCATCTTGGCATCCCATACCTTTAGCTATTTAACTGTTTGTGTATTTTTCAGCATTGTTCTCGAGACGGATGCAAATGTCATAGCAGGGAAGGTCGCAAGTCACAGTATTGACAGTAATGCTCCTTTGTCTGAGCAGGTACAGTACAATATTTCTATAGCTTGTTTGTTTGGTTGGCAATATGAATTATGTTTGTTGTCGGTTCACTGCCTTCTAAAATTTCTGAACATAACATCGTCTAACGCACCTAAATTTTGAATTTTAAAATTTTAAAATGCAAAATTATATTTTAAAAAATGATTACGAATATAGTATTTCACATTATAAACTCAGTTCATTCTTTTAACTAAATATGTCTTATAACATGTAATATAAATTATATAAGACTACAAAATAATAGTGTTTATATTGGTTAATTTTATGGTTTAAATACATATTTGTATATATTATCTACACGTTAAAAAACAATTGTTTAAATTAGAATCTAATTTCTGATGCTATGACCAAAAACATATTGGAAAGCGTATGAAGTACAATTATGAACCCTATTTTTATTGAATCTCCTAATTCTGATTTTTTGTTTTATGAAGCATGCCTTTTATCTTTTTAATTCTCCCTTTCGTTTTTCCAGTATTTTGAAAGATGTTTTTATCTCTCTTGCAGACAATAAGTCAAGCATTGGCCACAGCTCGCGAACATCTAGCAAGATCTCTTCTCAAGTAATATGTTCTATTGATACAAGTGAGTGGCAAGAACTATCCCCCACACCAAAAAAAAGAAAAAAGAGAAGAAAATTCAGGTCGAGTTGGGGTGGTGTTTTTGGTAAGAGATTGATTGATCTCATGTTTGTATATTCAGCTCATACTATGCTGCCTTACCTTTTGGTAAAACCTGATTTTGGATCTGAGCAGATGTGGTTCATTGCGGGACTGGTGCTAAGTGTTATTATATGTGCCTCTGGAGTTGCAATCTATATTTTCTTTTTAGGCCATTCGATTTTTGTGGTCGTTGGCTAAAGAAAAATTATTTTAGATTACAATGCAAACATATTTTCAAAATATAGTCAAATATCGCCATCTATTTGTTGGTAGGCCACGATAGATTGCTATTTTGGTTTATTTTGCTTATAAAAAAATAGTCAATAGCTAGAAGAGGATCTAATAGGTTGAGTTCGAATGCCATTATTTTGGGTGTGCATTTTCAATTAATTAA

mRNA sequence

ACAGTTTAATTATGGAAAAGTAAGGGTCTCGTTTTAAATTTGAGTTAACTTTGGGGACCGGCCGGAGTCGACGAAGTATTTGGACAGAGTCTCCTTTTTTCGATTTTCGTTCTCTTGTTTCTCAATAACGCGAGAGAGATCCGACGGCGTTCGAATTCCCAAAGAATATATTCCCGGGAAATTTTTTCACAAATCTAATGGAATCTTGCCCTGCCATTAAAAGCATTCTTCTTTTGGATTCTGAAGGGAAGCGTGTAGCTGTCAAGTATTATTCTGATGACTGGCCTACAAATAGTGCAAAGGAAGCTTTTGAGAAATCCGTTTTCATCAAAACTCAGAAGACTAATGCTCGAACAGAGGCGGAGATAGCAATGTTTGAGAGCAATATAGTGGTTTACAAGTTTGCTCAAGACCTTCATTTTTTTGTCACGGGTGGAGAAGATGAAAATGAACTCATTTTAGCATCCGTTCTTCAGGGTTTTTTTGATGCTGTGGGCATTCTTCTTAGGGGTAATGTAGAAAAGAAGGAGGCACTTGAGAACTTGGACCTCATTTTACTGTGTCTCGATGAAATTATCGATGGAGGCATTGTTCTCGAGACGGATGCAAATGTCATAGCAGGGAAGGTCGCAAGTCACAGTATTGACAGTAATGCTCCTTTGTCTGAGCAGACAATAAGTCAAGCATTGGCCACAGCTCGCGAACATCTAGCAAGATCTCTTCTCAAGTAATATGTTCTATTGATACAAGTGAGTGGCAAGAACTATCCCCCACACCAAAAAAAAGAAAAAAGAGAAGAAAATTCAGGTCGAGTTGGGGTGGTGTTTTTGGTAAGAGATTGATTGATCTCATGTTTGTATATTCAGCTCATACTATGCTGCCTTACCTTTTGGTAAAACCTGATTTTGGATCTGAGCAGATGTGGTTCATTGCGGGACTGGTGCTAAGTGTTATTATATGTGCCTCTGGAGTTGCAATCTATATTTTCTTTTTAGGCCATTCGATTTTTGTGGTCGTTGGCTAAAGAAAAATTATTTTAGATTACAATGCAAACATATTTTCAAAATATAGTCAAATATCGCCATCTATTTGTTGGTAGGCCACGATAGATTGCTATTTTGGTTTATTTTGCTTATAAAAAAATAGTCAATAGCTAGAAGAGGATCTAATAGGTTGAGTTCGAATGCCATTATTTTGGGTGTGCATTTTCAATTAATTAA

Coding sequence (CDS)

ATGGAATCTTGCCCTGCCATTAAAAGCATTCTTCTTTTGGATTCTGAAGGGAAGCGTGTAGCTGTCAAGTATTATTCTGATGACTGGCCTACAAATAGTGCAAAGGAAGCTTTTGAGAAATCCGTTTTCATCAAAACTCAGAAGACTAATGCTCGAACAGAGGCGGAGATAGCAATGTTTGAGAGCAATATAGTGGTTTACAAGTTTGCTCAAGACCTTCATTTTTTTGTCACGGGTGGAGAAGATGAAAATGAACTCATTTTAGCATCCGTTCTTCAGGGTTTTTTTGATGCTGTGGGCATTCTTCTTAGGGGTAATGTAGAAAAGAAGGAGGCACTTGAGAACTTGGACCTCATTTTACTGTGTCTCGATGAAATTATCGATGGAGGCATTGTTCTCGAGACGGATGCAAATGTCATAGCAGGGAAGGTCGCAAGTCACAGTATTGACAGTAATGCTCCTTTGTCTGAGCAGACAATAAGTCAAGCATTGGCCACAGCTCGCGAACATCTAGCAAGATCTCTTCTCAAGTAA

Protein sequence

MESCPAIKSILLLDSEGKRVAVKYYSDDWPTNSAKEAFEKSVFIKTQKTNARTEAEIAMFESNIVVYKFAQDLHFFVTGGEDENELILASVLQGFFDAVGILLRGNVEKKEALENLDLILLCLDEIIDGGIVLETDANVIAGKVASHSIDSNAPLSEQTISQALATAREHLARSLLK*

Homology

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BLAST of CsGy1G021170 vs. ExPASy Swiss-Prot
Match: Q940S5 (Coatomer subunit zeta-1 OS=Arabidopsis thaliana OX=3702 GN=At1g60970 PE=2 SV=1)

HSP 1 Score: 278.9 bits (712), Expect = 4.1e-74
Identity = 143/177 (80.79%), Postives = 156/177 (88.14%), Query Frame = 0


Query: 1   MESCPAIKSILLLDSEGKRVAVKYYSDDWPTNSAKEAFEKSVFIKTQKTNARTEAEIAMF 60
           ME  P +K+ILLLDSEGKRVAVKYYSDDWPTNSA+EAFEKSVF KTQKTNARTE E+   
Sbjct: 1   MELPPKVKNILLLDSEGKRVAVKYYSDDWPTNSAQEAFEKSVFTKTQKTNARTEVEVTAL 60

Query: 61  ESNIVVYKFAQDLHFFVTGGEDENELILASVLQGFFDAVGILLRGNVEKKEALENLDLIL 120
           E+NIVVYKF QDLHFFVTGGE+ENELILASVL+G FDAV +LLR NV+K+EAL+NLDLI 
Sbjct: 61  ENNIVVYKFVQDLHFFVTGGEEENELILASVLEGLFDAVTLLLRSNVDKREALDNLDLIF 120

Query: 121 LCLDEIIDGGIVLETDANVIAGKVASHSIDSNAPLSEQTISQALATAREHLARSLLK 178
           L  DEIIDGGIVLETDANVIAGK   +S D NAPLSEQTISQALATAREHL RSL+K
Sbjct: 121 LSFDEIIDGGIVLETDANVIAGKAGINSTDPNAPLSEQTISQALATAREHLTRSLMK 177

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BLAST of CsGy1G021170 vs. ExPASy Swiss-Prot
Match: Q6Z844 (Coatomer subunit zeta-2 OS=Oryza sativa subsp. japonica OX=39947 GN=COPZ2 PE=2 SV=1)

HSP 1 Score: 277.7 bits (709), Expect = 9.1e-74
Identity = 137/176 (77.84%), Postives = 162/176 (92.05%), Query Frame = 0


Query: 2   ESCPAIKSILLLDSEGKRVAVKYYSDDWPTNSAKEAFEKSVFIKTQKTNARTEAEIAMFE 61
           ESCP++K+ILLLDSEGKRVAVKY+SDDW +N++K AFEKSVF KT KTNAR+EAEI +F+
Sbjct: 7   ESCPSVKNILLLDSEGKRVAVKYFSDDWSSNASKLAFEKSVFTKTLKTNARSEAEITLFD 66

Query: 62  SNIVVYKFAQDLHFFVTGGEDENELILASVLQGFFDAVGILLRGNVEKKEALENLDLILL 121
             IVVYKF QDLHFFVT G+DENELI+A+VLQGF D+VG+LLRG+VEK+ ALENLDLILL
Sbjct: 67  GYIVVYKFVQDLHFFVTAGDDENELIIANVLQGFSDSVGLLLRGDVEKRTALENLDLILL 126

Query: 122 CLDEIIDGGIVLETDANVIAGKVASHSIDSNAPLSEQTISQALATAREHLARSLLK 178
           C+DEI+DGGI+LETDAN IAGKVA++++D +AP SEQTISQALATAREHLARSLLK
Sbjct: 127 CIDEIVDGGIILETDANTIAGKVATNAVDGSAPFSEQTISQALATAREHLARSLLK 182

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BLAST of CsGy1G021170 vs. ExPASy Swiss-Prot
Match: Q84LG4 (Coatomer subunit zeta-2 OS=Arabidopsis thaliana OX=3702 GN=At3g09800 PE=2 SV=1)

HSP 1 Score: 276.2 bits (705), Expect = 2.6e-73
Identity = 139/175 (79.43%), Postives = 157/175 (89.71%), Query Frame = 0


Query: 2   ESCPAIKSILLLDSEGKRVAVKYYSDDWPTNSAKEAFEKSVFIKTQKTNARTEAEIAMFE 61
           +SCP +K+ILLLDSEGKRVAVKYYSDDWPTN+AK +FEK VF KT KTNARTEAEI + +
Sbjct: 4   DSCPLVKNILLLDSEGKRVAVKYYSDDWPTNAAKLSFEKYVFSKTSKTNARTEAEITLLD 63

Query: 62  SNIVVYKFAQDLHFFVTGGEDENELILASVLQGFFDAVGILLRGNVEKKEALENLDLILL 121
           SNI+VYKFAQDLHFFVTGGE+ENELILASVLQGFFDAV +LLR NVEK EALENLDLI L
Sbjct: 64  SNIIVYKFAQDLHFFVTGGENENELILASVLQGFFDAVALLLRSNVEKMEALENLDLIFL 123

Query: 122 CLDEIIDGGIVLETDANVIAGKVASHSIDSNAPLSEQTISQALATAREHLARSLL 177
           CLDE++D G+VLETD NVIAGKVA  S +++  LSEQT++QALATAREHLARSLL
Sbjct: 124 CLDEMVDQGVVLETDPNVIAGKVAMQSTEASGSLSEQTLTQALATAREHLARSLL 178

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BLAST of CsGy1G021170 vs. ExPASy Swiss-Prot
Match: Q8H1F4 (Coatomer subunit zeta-3 OS=Arabidopsis thaliana OX=3702 GN=At4g08520 PE=2 SV=1)

HSP 1 Score: 274.2 bits (700), Expect = 1.0e-72
Identity = 139/175 (79.43%), Postives = 157/175 (89.71%), Query Frame = 0


Query: 2   ESCPAIKSILLLDSEGKRVAVKYYSDDWPTNSAKEAFEKSVFIKTQKTNARTEAEIAMFE 61
           +SCP +K+ILLLDSEGKRVAVKYYSDDW TN++K AFEK VF KT KTNARTEAEI + E
Sbjct: 6   DSCPLVKNILLLDSEGKRVAVKYYSDDWATNASKLAFEKYVFSKTSKTNARTEAEITLLE 65

Query: 62  SNIVVYKFAQDLHFFVTGGEDENELILASVLQGFFDAVGILLRGNVEKKEALENLDLILL 121
           SNIVVYKFAQDLHFFVTGGE+ENEL+L+SVLQGFFDAV +LLR NVEK EALENLDLI L
Sbjct: 66  SNIVVYKFAQDLHFFVTGGENENELVLSSVLQGFFDAVALLLRNNVEKMEALENLDLIFL 125

Query: 122 CLDEIIDGGIVLETDANVIAGKVASHSIDSNAPLSEQTISQALATAREHLARSLL 177
           CLDE++D G+VLETDANVIAGKVA  S +++  LSEQT++QALATAREHLARSLL
Sbjct: 126 CLDEMVDQGMVLETDANVIAGKVAMQSAEASGSLSEQTLTQALATAREHLARSLL 180

[Close]

BLAST of CsGy1G021170 vs. ExPASy Swiss-Prot
Match: Q9MAX5 (Coatomer subunit zeta-1 OS=Oryza sativa subsp. japonica OX=39947 GN=COPZ1 PE=2 SV=1)

HSP 1 Score: 263.8 bits (673), Expect = 1.4e-69
Identity = 134/176 (76.14%), Postives = 153/176 (86.93%), Query Frame = 0


Query: 1   MESCPAIKSILLLDSEGKRVAVKYYSDDWPTNSAKEAFEKSVFIKTQKTNARTEAEIAMF 60
           MESCP++K+ILLLDSEGKRVAVKYY+DDWPT SAK AFEKSVF+KTQK  A  EAEI MF
Sbjct: 1   MESCPSVKNILLLDSEGKRVAVKYYTDDWPTLSAKLAFEKSVFVKTQKATAGAEAEIVMF 60

Query: 61  ESNIVVYKFAQDLHFFVTGGEDENELILASVLQGFFDAVGILLRGNVEKKEALENLDLIL 120
           + +IVVYKF QDLHFFVTGGE+ENELILASVLQGF DAV I+LR NV+K+ ALENLDLIL
Sbjct: 61  DGHIVVYKFIQDLHFFVTGGEEENELILASVLQGFTDAVDIILRNNVDKRTALENLDLIL 120

Query: 121 LCLDEIIDGGIVLETDANVIAGKVASHSIDSNAPLSEQTISQALATAREHLARSLL 177
           LCLDEI+DGGIVLET+ +VIA KV++H I+    L+EQTI QAL TAREHL +SLL
Sbjct: 121 LCLDEIVDGGIVLETEGSVIAEKVSAHGIEGATSLAEQTIVQALTTAREHLTKSLL 176

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BLAST of CsGy1G021170 vs. NCBI nr
Match: XP_011657415.1 (coatomer subunit zeta-1 [Cucumis sativus] >KGN65568.1 hypothetical protein Csa_019631 [Cucumis sativus])

HSP 1 Score: 338 bits (866), Expect = 1.18e-116
Identity = 177/177 (100.00%), Postives = 177/177 (100.00%), Query Frame = 0


Query: 1   MESCPAIKSILLLDSEGKRVAVKYYSDDWPTNSAKEAFEKSVFIKTQKTNARTEAEIAMF 60
           MESCPAIKSILLLDSEGKRVAVKYYSDDWPTNSAKEAFEKSVFIKTQKTNARTEAEIAMF
Sbjct: 1   MESCPAIKSILLLDSEGKRVAVKYYSDDWPTNSAKEAFEKSVFIKTQKTNARTEAEIAMF 60

Query: 61  ESNIVVYKFAQDLHFFVTGGEDENELILASVLQGFFDAVGILLRGNVEKKEALENLDLIL 120
           ESNIVVYKFAQDLHFFVTGGEDENELILASVLQGFFDAVGILLRGNVEKKEALENLDLIL
Sbjct: 61  ESNIVVYKFAQDLHFFVTGGEDENELILASVLQGFFDAVGILLRGNVEKKEALENLDLIL 120

Query: 121 LCLDEIIDGGIVLETDANVIAGKVASHSIDSNAPLSEQTISQALATAREHLARSLLK 177
           LCLDEIIDGGIVLETDANVIAGKVASHSIDSNAPLSEQTISQALATAREHLARSLLK
Sbjct: 121 LCLDEIIDGGIVLETDANVIAGKVASHSIDSNAPLSEQTISQALATAREHLARSLLK 177

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BLAST of CsGy1G021170 vs. NCBI nr
Match: XP_008443986.1 (PREDICTED: coatomer subunit zeta-1-like [Cucumis melo])

HSP 1 Score: 331 bits (849), Expect = 4.60e-114
Identity = 171/177 (96.61%), Postives = 176/177 (99.44%), Query Frame = 0


Query: 1   MESCPAIKSILLLDSEGKRVAVKYYSDDWPTNSAKEAFEKSVFIKTQKTNARTEAEIAMF 60
           MESCP+IK+ILLLDSEGKRVAVKYYSDDWPTNS KEAFEK+VFIKTQKTNARTEAEIAMF
Sbjct: 1   MESCPSIKNILLLDSEGKRVAVKYYSDDWPTNSTKEAFEKAVFIKTQKTNARTEAEIAMF 60

Query: 61  ESNIVVYKFAQDLHFFVTGGEDENELILASVLQGFFDAVGILLRGNVEKKEALENLDLIL 120
           E+NIVVYKFAQDLHFFVTGGEDENELILASVLQGFFDAVGILLRGNVEKKEALENLDLIL
Sbjct: 61  ENNIVVYKFAQDLHFFVTGGEDENELILASVLQGFFDAVGILLRGNVEKKEALENLDLIL 120

Query: 121 LCLDEIIDGGIVLETDANVIAGKVASHSIDSNAPLSEQTISQALATAREHLARSLLK 177
           LCLDEIIDGGI+LETDANVIAGKVASHSIDSNAPLSEQTISQALATAREHLARSLLK
Sbjct: 121 LCLDEIIDGGIILETDANVIAGKVASHSIDSNAPLSEQTISQALATAREHLARSLLK 177

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BLAST of CsGy1G021170 vs. NCBI nr
Match: XP_038895636.1 (coatomer subunit zeta-1-like isoform X2 [Benincasa hispida])

HSP 1 Score: 330 bits (847), Expect = 9.28e-114
Identity = 171/177 (96.61%), Postives = 176/177 (99.44%), Query Frame = 0


Query: 1   MESCPAIKSILLLDSEGKRVAVKYYSDDWPTNSAKEAFEKSVFIKTQKTNARTEAEIAMF 60
           MESCP+IK+ILLLDSEGKRVAVKYYSDDWPTNSAKEAFEK+VFIKTQKTNARTEAEIAMF
Sbjct: 1   MESCPSIKNILLLDSEGKRVAVKYYSDDWPTNSAKEAFEKAVFIKTQKTNARTEAEIAMF 60

Query: 61  ESNIVVYKFAQDLHFFVTGGEDENELILASVLQGFFDAVGILLRGNVEKKEALENLDLIL 120
           E+NIVVYKFAQDLHFFVTGGEDENELILASVLQGFFDAVGILLRGNVEKKEALENLDLIL
Sbjct: 61  ENNIVVYKFAQDLHFFVTGGEDENELILASVLQGFFDAVGILLRGNVEKKEALENLDLIL 120

Query: 121 LCLDEIIDGGIVLETDANVIAGKVASHSIDSNAPLSEQTISQALATAREHLARSLLK 177
           LCLDEIIDGGI+LETDANVIAGKVASHSIDS APLSEQTISQALATAREHLARSLLK
Sbjct: 121 LCLDEIIDGGIILETDANVIAGKVASHSIDSGAPLSEQTISQALATAREHLARSLLK 177

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BLAST of CsGy1G021170 vs. NCBI nr
Match: KAA0057104.1 (coatomer subunit zeta-1-like [Cucumis melo var. makuwa] >TYK20639.1 coatomer subunit zeta-1-like [Cucumis melo var. makuwa])

HSP 1 Score: 329 bits (844), Expect = 2.75e-113
Identity = 170/176 (96.59%), Postives = 175/176 (99.43%), Query Frame = 0


Query: 2   ESCPAIKSILLLDSEGKRVAVKYYSDDWPTNSAKEAFEKSVFIKTQKTNARTEAEIAMFE 61
           ESCP+IK+ILLLDSEGKRVAVKYYSDDWPTNS KEAFEK+VFIKTQKTNARTEAEIAMFE
Sbjct: 3   ESCPSIKNILLLDSEGKRVAVKYYSDDWPTNSTKEAFEKAVFIKTQKTNARTEAEIAMFE 62

Query: 62  SNIVVYKFAQDLHFFVTGGEDENELILASVLQGFFDAVGILLRGNVEKKEALENLDLILL 121
           +NIVVYKFAQDLHFFVTGGEDENELILASVLQGFFDAVGILLRGNVEKKEALENLDLILL
Sbjct: 63  NNIVVYKFAQDLHFFVTGGEDENELILASVLQGFFDAVGILLRGNVEKKEALENLDLILL 122

Query: 122 CLDEIIDGGIVLETDANVIAGKVASHSIDSNAPLSEQTISQALATAREHLARSLLK 177
           CLDEIIDGGI+LETDANVIAGKVASHSIDSNAPLSEQTISQALATAREHLARSLLK
Sbjct: 123 CLDEIIDGGIILETDANVIAGKVASHSIDSNAPLSEQTISQALATAREHLARSLLK 178

[Close]

BLAST of CsGy1G021170 vs. NCBI nr
Match: XP_038895635.1 (coatomer subunit zeta-2-like isoform X1 [Benincasa hispida])

HSP 1 Score: 328 bits (842), Expect = 5.56e-113
Identity = 170/176 (96.59%), Postives = 175/176 (99.43%), Query Frame = 0


Query: 2   ESCPAIKSILLLDSEGKRVAVKYYSDDWPTNSAKEAFEKSVFIKTQKTNARTEAEIAMFE 61
           ESCP+IK+ILLLDSEGKRVAVKYYSDDWPTNSAKEAFEK+VFIKTQKTNARTEAEIAMFE
Sbjct: 3   ESCPSIKNILLLDSEGKRVAVKYYSDDWPTNSAKEAFEKAVFIKTQKTNARTEAEIAMFE 62

Query: 62  SNIVVYKFAQDLHFFVTGGEDENELILASVLQGFFDAVGILLRGNVEKKEALENLDLILL 121
           +NIVVYKFAQDLHFFVTGGEDENELILASVLQGFFDAVGILLRGNVEKKEALENLDLILL
Sbjct: 63  NNIVVYKFAQDLHFFVTGGEDENELILASVLQGFFDAVGILLRGNVEKKEALENLDLILL 122

Query: 122 CLDEIIDGGIVLETDANVIAGKVASHSIDSNAPLSEQTISQALATAREHLARSLLK 177
           CLDEIIDGGI+LETDANVIAGKVASHSIDS APLSEQTISQALATAREHLARSLLK
Sbjct: 123 CLDEIIDGGIILETDANVIAGKVASHSIDSGAPLSEQTISQALATAREHLARSLLK 178

[Close]

BLAST of CsGy1G021170 vs. ExPASy TrEMBL
Match: A0A0A0LUZ4 (Coatomer subunit zeta OS=Cucumis sativus OX=3659 GN=Csa_1G448990 PE=3 SV=1)

HSP 1 Score: 338 bits (866), Expect = 5.69e-117
Identity = 177/177 (100.00%), Postives = 177/177 (100.00%), Query Frame = 0


Query: 1   MESCPAIKSILLLDSEGKRVAVKYYSDDWPTNSAKEAFEKSVFIKTQKTNARTEAEIAMF 60
           MESCPAIKSILLLDSEGKRVAVKYYSDDWPTNSAKEAFEKSVFIKTQKTNARTEAEIAMF
Sbjct: 1   MESCPAIKSILLLDSEGKRVAVKYYSDDWPTNSAKEAFEKSVFIKTQKTNARTEAEIAMF 60

Query: 61  ESNIVVYKFAQDLHFFVTGGEDENELILASVLQGFFDAVGILLRGNVEKKEALENLDLIL 120
           ESNIVVYKFAQDLHFFVTGGEDENELILASVLQGFFDAVGILLRGNVEKKEALENLDLIL
Sbjct: 61  ESNIVVYKFAQDLHFFVTGGEDENELILASVLQGFFDAVGILLRGNVEKKEALENLDLIL 120

Query: 121 LCLDEIIDGGIVLETDANVIAGKVASHSIDSNAPLSEQTISQALATAREHLARSLLK 177
           LCLDEIIDGGIVLETDANVIAGKVASHSIDSNAPLSEQTISQALATAREHLARSLLK
Sbjct: 121 LCLDEIIDGGIVLETDANVIAGKVASHSIDSNAPLSEQTISQALATAREHLARSLLK 177

[Close]

BLAST of CsGy1G021170 vs. ExPASy TrEMBL
Match: A0A1S3B9E0 (Coatomer subunit zeta OS=Cucumis melo OX=3656 GN=LOC103487438 PE=3 SV=1)

HSP 1 Score: 331 bits (849), Expect = 2.23e-114
Identity = 171/177 (96.61%), Postives = 176/177 (99.44%), Query Frame = 0


Query: 1   MESCPAIKSILLLDSEGKRVAVKYYSDDWPTNSAKEAFEKSVFIKTQKTNARTEAEIAMF 60
           MESCP+IK+ILLLDSEGKRVAVKYYSDDWPTNS KEAFEK+VFIKTQKTNARTEAEIAMF
Sbjct: 1   MESCPSIKNILLLDSEGKRVAVKYYSDDWPTNSTKEAFEKAVFIKTQKTNARTEAEIAMF 60

Query: 61  ESNIVVYKFAQDLHFFVTGGEDENELILASVLQGFFDAVGILLRGNVEKKEALENLDLIL 120
           E+NIVVYKFAQDLHFFVTGGEDENELILASVLQGFFDAVGILLRGNVEKKEALENLDLIL
Sbjct: 61  ENNIVVYKFAQDLHFFVTGGEDENELILASVLQGFFDAVGILLRGNVEKKEALENLDLIL 120

Query: 121 LCLDEIIDGGIVLETDANVIAGKVASHSIDSNAPLSEQTISQALATAREHLARSLLK 177
           LCLDEIIDGGI+LETDANVIAGKVASHSIDSNAPLSEQTISQALATAREHLARSLLK
Sbjct: 121 LCLDEIIDGGIILETDANVIAGKVASHSIDSNAPLSEQTISQALATAREHLARSLLK 177

[Close]

BLAST of CsGy1G021170 vs. ExPASy TrEMBL
Match: A0A5D3DB03 (Coatomer subunit zeta OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold480G00210 PE=3 SV=1)

HSP 1 Score: 329 bits (844), Expect = 1.33e-113
Identity = 170/176 (96.59%), Postives = 175/176 (99.43%), Query Frame = 0


Query: 2   ESCPAIKSILLLDSEGKRVAVKYYSDDWPTNSAKEAFEKSVFIKTQKTNARTEAEIAMFE 61
           ESCP+IK+ILLLDSEGKRVAVKYYSDDWPTNS KEAFEK+VFIKTQKTNARTEAEIAMFE
Sbjct: 3   ESCPSIKNILLLDSEGKRVAVKYYSDDWPTNSTKEAFEKAVFIKTQKTNARTEAEIAMFE 62

Query: 62  SNIVVYKFAQDLHFFVTGGEDENELILASVLQGFFDAVGILLRGNVEKKEALENLDLILL 121
           +NIVVYKFAQDLHFFVTGGEDENELILASVLQGFFDAVGILLRGNVEKKEALENLDLILL
Sbjct: 63  NNIVVYKFAQDLHFFVTGGEDENELILASVLQGFFDAVGILLRGNVEKKEALENLDLILL 122

Query: 122 CLDEIIDGGIVLETDANVIAGKVASHSIDSNAPLSEQTISQALATAREHLARSLLK 177
           CLDEIIDGGI+LETDANVIAGKVASHSIDSNAPLSEQTISQALATAREHLARSLLK
Sbjct: 123 CLDEIIDGGIILETDANVIAGKVASHSIDSNAPLSEQTISQALATAREHLARSLLK 178

[Close]

BLAST of CsGy1G021170 vs. ExPASy TrEMBL
Match: A0A6J1EPA3 (Coatomer subunit zeta OS=Cucurbita moschata OX=3662 GN=LOC111434347 PE=3 SV=1)

HSP 1 Score: 327 bits (837), Expect = 1.50e-112
Identity = 169/177 (95.48%), Postives = 174/177 (98.31%), Query Frame = 0


Query: 1   MESCPAIKSILLLDSEGKRVAVKYYSDDWPTNSAKEAFEKSVFIKTQKTNARTEAEIAMF 60
           MESCP+IK+ILLLDSEGKRVAVKYYSDDWPTNSAKEAFEK+VFIKTQKTNARTEAEIAMF
Sbjct: 1   MESCPSIKNILLLDSEGKRVAVKYYSDDWPTNSAKEAFEKAVFIKTQKTNARTEAEIAMF 60

Query: 61  ESNIVVYKFAQDLHFFVTGGEDENELILASVLQGFFDAVGILLRGNVEKKEALENLDLIL 120
           E+NIVVYKF QDLHFFVTGGEDENELILASVLQGFFDAVGILLR NVEKKEALENLDLIL
Sbjct: 61  ENNIVVYKFVQDLHFFVTGGEDENELILASVLQGFFDAVGILLRSNVEKKEALENLDLIL 120

Query: 121 LCLDEIIDGGIVLETDANVIAGKVASHSIDSNAPLSEQTISQALATAREHLARSLLK 177
           LCLDEIIDGGI+LETDANVIAGKVASHSIDS APLSEQTISQALATAREHLARSLLK
Sbjct: 121 LCLDEIIDGGIILETDANVIAGKVASHSIDSGAPLSEQTISQALATAREHLARSLLK 177

[Close]

BLAST of CsGy1G021170 vs. ExPASy TrEMBL
Match: A0A6J1CEY0 (Coatomer subunit zeta OS=Momordica charantia OX=3673 GN=LOC111010622 PE=3 SV=1)

HSP 1 Score: 326 bits (835), Expect = 3.03e-112
Identity = 168/177 (94.92%), Postives = 174/177 (98.31%), Query Frame = 0


Query: 1   MESCPAIKSILLLDSEGKRVAVKYYSDDWPTNSAKEAFEKSVFIKTQKTNARTEAEIAMF 60
           MESCP+IK+ILLLDSEGKRVAVKYYSDDWPTNSAKEAFEK+VF KTQKTNARTEAEIAMF
Sbjct: 1   MESCPSIKNILLLDSEGKRVAVKYYSDDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMF 60

Query: 61  ESNIVVYKFAQDLHFFVTGGEDENELILASVLQGFFDAVGILLRGNVEKKEALENLDLIL 120
           E+NIVVYKF QDLHFFVTGGEDENELILASVLQGFFDAVGILLRGNVEKKEALENLDLIL
Sbjct: 61  ENNIVVYKFVQDLHFFVTGGEDENELILASVLQGFFDAVGILLRGNVEKKEALENLDLIL 120

Query: 121 LCLDEIIDGGIVLETDANVIAGKVASHSIDSNAPLSEQTISQALATAREHLARSLLK 177
           LCLDEIIDGGI+LETDANVIAGKVASHSID+ APLSEQTISQALATAREHLARSLLK
Sbjct: 121 LCLDEIIDGGIILETDANVIAGKVASHSIDTGAPLSEQTISQALATAREHLARSLLK 177

[Close]

BLAST of CsGy1G021170 vs. TAIR 10
Match: AT1G60970.1 (SNARE-like superfamily protein )

HSP 1 Score: 278.9 bits (712), Expect = 2.9e-75
Identity = 143/177 (80.79%), Postives = 156/177 (88.14%), Query Frame = 0


Query: 1   MESCPAIKSILLLDSEGKRVAVKYYSDDWPTNSAKEAFEKSVFIKTQKTNARTEAEIAMF 60
           ME  P +K+ILLLDSEGKRVAVKYYSDDWPTNSA+EAFEKSVF KTQKTNARTE E+   
Sbjct: 1   MELPPKVKNILLLDSEGKRVAVKYYSDDWPTNSAQEAFEKSVFTKTQKTNARTEVEVTAL 60

Query: 61  ESNIVVYKFAQDLHFFVTGGEDENELILASVLQGFFDAVGILLRGNVEKKEALENLDLIL 120
           E+NIVVYKF QDLHFFVTGGE+ENELILASVL+G FDAV +LLR NV+K+EAL+NLDLI 
Sbjct: 61  ENNIVVYKFVQDLHFFVTGGEEENELILASVLEGLFDAVTLLLRSNVDKREALDNLDLIF 120

Query: 121 LCLDEIIDGGIVLETDANVIAGKVASHSIDSNAPLSEQTISQALATAREHLARSLLK 178
           L  DEIIDGGIVLETDANVIAGK   +S D NAPLSEQTISQALATAREHL RSL+K
Sbjct: 121 LSFDEIIDGGIVLETDANVIAGKAGINSTDPNAPLSEQTISQALATAREHLTRSLMK 177

[Close]

BLAST of CsGy1G021170 vs. TAIR 10
Match: AT3G09800.1 (SNARE-like superfamily protein )

HSP 1 Score: 275.8 bits (704), Expect = 2.5e-74
Identity = 139/175 (79.43%), Postives = 156/175 (89.14%), Query Frame = 0


Query: 2   ESCPAIKSILLLDSEGKRVAVKYYSDDWPTNSAKEAFEKSVFIKTQKTNARTEAEIAMFE 61
           +SCP +K ILLLDSEGKRVAVKYYSDDWPTN+AK +FEK VF KT KTNARTEAEI + +
Sbjct: 4   DSCPLVKKILLLDSEGKRVAVKYYSDDWPTNAAKLSFEKYVFSKTSKTNARTEAEITLLD 63

Query: 62  SNIVVYKFAQDLHFFVTGGEDENELILASVLQGFFDAVGILLRGNVEKKEALENLDLILL 121
           SNI+VYKFAQDLHFFVTGGE+ENELILASVLQGFFDAV +LLR NVEK EALENLDLI L
Sbjct: 64  SNIIVYKFAQDLHFFVTGGENENELILASVLQGFFDAVALLLRSNVEKMEALENLDLIFL 123

Query: 122 CLDEIIDGGIVLETDANVIAGKVASHSIDSNAPLSEQTISQALATAREHLARSLL 177
           CLDE++D G+VLETD NVIAGKVA  S +++  LSEQT++QALATAREHLARSLL
Sbjct: 124 CLDEMVDQGVVLETDPNVIAGKVAMQSTEASGSLSEQTLTQALATAREHLARSLL 178

[Close]

BLAST of CsGy1G021170 vs. TAIR 10
Match: AT4G08520.1 (SNARE-like superfamily protein )

HSP 1 Score: 274.2 bits (700), Expect = 7.2e-74
Identity = 139/175 (79.43%), Postives = 157/175 (89.71%), Query Frame = 0


Query: 2   ESCPAIKSILLLDSEGKRVAVKYYSDDWPTNSAKEAFEKSVFIKTQKTNARTEAEIAMFE 61
           +SCP +K+ILLLDSEGKRVAVKYYSDDW TN++K AFEK VF KT KTNARTEAEI + E
Sbjct: 6   DSCPLVKNILLLDSEGKRVAVKYYSDDWATNASKLAFEKYVFSKTSKTNARTEAEITLLE 65

Query: 62  SNIVVYKFAQDLHFFVTGGEDENELILASVLQGFFDAVGILLRGNVEKKEALENLDLILL 121
           SNIVVYKFAQDLHFFVTGGE+ENEL+L+SVLQGFFDAV +LLR NVEK EALENLDLI L
Sbjct: 66  SNIVVYKFAQDLHFFVTGGENENELVLSSVLQGFFDAVALLLRNNVEKMEALENLDLIFL 125

Query: 122 CLDEIIDGGIVLETDANVIAGKVASHSIDSNAPLSEQTISQALATAREHLARSLL 177
           CLDE++D G+VLETDANVIAGKVA  S +++  LSEQT++QALATAREHLARSLL
Sbjct: 126 CLDEMVDQGMVLETDANVIAGKVAMQSAEASGSLSEQTLTQALATAREHLARSLL 180

The following BLAST results are available for this feature:

BLAST of CsGy1G021170 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q940S5	4.1e-74	80.79	Coatomer subunit zeta-1 OS=Arabidopsis thaliana OX=3702 GN=At1g60970 PE=2 SV=1	[more]
Q6Z844	9.1e-74	77.84	Coatomer subunit zeta-2 OS=Oryza sativa subsp. japonica OX=39947 GN=COPZ2 PE=2 S...	[more]
Q84LG4	2.6e-73	79.43	Coatomer subunit zeta-2 OS=Arabidopsis thaliana OX=3702 GN=At3g09800 PE=2 SV=1	[more]
Q8H1F4	1.0e-72	79.43	Coatomer subunit zeta-3 OS=Arabidopsis thaliana OX=3702 GN=At4g08520 PE=2 SV=1	[more]
Q9MAX5	1.4e-69	76.14	Coatomer subunit zeta-1 OS=Oryza sativa subsp. japonica OX=39947 GN=COPZ1 PE=2 S...	[more]

BLAST of CsGy1G021170 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011657415.1	1.18e-116	100.00	coatomer subunit zeta-1 [Cucumis sativus] >KGN65568.1 hypothetical protein Csa_0...	[more]
XP_008443986.1	4.60e-114	96.61	PREDICTED: coatomer subunit zeta-1-like [Cucumis melo]	[more]
XP_038895636.1	9.28e-114	96.61	coatomer subunit zeta-1-like isoform X2 [Benincasa hispida]	[more]
KAA0057104.1	2.75e-113	96.59	coatomer subunit zeta-1-like [Cucumis melo var. makuwa] >TYK20639.1 coatomer sub...	[more]
XP_038895635.1	5.56e-113	96.59	coatomer subunit zeta-2-like isoform X1 [Benincasa hispida]	[more]

BLAST of CsGy1G021170 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LUZ4	5.69e-117	100.00	Coatomer subunit zeta OS=Cucumis sativus OX=3659 GN=Csa_1G448990 PE=3 SV=1	[more]
A0A1S3B9E0	2.23e-114	96.61	Coatomer subunit zeta OS=Cucumis melo OX=3656 GN=LOC103487438 PE=3 SV=1	[more]
A0A5D3DB03	1.33e-113	96.59	Coatomer subunit zeta OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold48...	[more]
A0A6J1EPA3	1.50e-112	95.48	Coatomer subunit zeta OS=Cucurbita moschata OX=3662 GN=LOC111434347 PE=3 SV=1	[more]
A0A6J1CEY0	3.03e-112	94.92	Coatomer subunit zeta OS=Momordica charantia OX=3673 GN=LOC111010622 PE=3 SV=1	[more]

BLAST of CsGy1G021170 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G60970.1	2.9e-75	80.79	SNARE-like superfamily protein	[more]
AT3G09800.1	2.5e-74	79.43	SNARE-like superfamily protein	[more]
AT4G08520.1	7.2e-74	79.43	SNARE-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.30.450.60		coord: 2..147 e-value: 5.2E-42 score: 145.2
None	No IPR available	PANTHER	PTHR11043:SF30	COATOMER SUBUNIT ZETA-2-LIKE	coord: 1..177
None	No IPR available	CDD	cd14829	Zeta-COP	coord: 8..143 e-value: 7.70145E-72 score: 210.865
IPR022775	AP complex, mu/sigma subunit	PFAM	PF01217	Clat_adaptor_s	coord: 7..145 e-value: 4.3E-22 score: 78.6
IPR039652	Coatomer subunit zeta	PANTHER	PTHR11043	ZETA-COAT PROTEIN	coord: 1..177
IPR011012	Longin-like domain superfamily	SUPERFAMILY	64356	SNARE-like	coord: 7..148

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy1G021170.1	CsGy1G021170.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006886	intracellular protein transport
biological_process	GO:0006891	intra-Golgi vesicle-mediated transport
biological_process	GO:0006890	retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum
cellular_component	GO:0030126	COPI vesicle coat
cellular_component	GO:0000139	Golgi membrane