CsGy1G020020 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy1G020020
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	golgin candidate 5
Location	Gy14Chr1: 18778874 .. 18779287 (+)
RNA-Seq Expression	CsGy1G020020
Synteny	CsGy1G020020

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGTCTACGTATCCAACACTCTAGGCTTCAGGTTGCTTTGGATTTATTTTGAACTGTATACTGTTTGTGCAGTATATGGACATGCCTGTATTGAGTTTTTATTGAATCCACAGGAAGCAGAAGCGAAAGCTGCTGCTGCTGAAGAAAGAGAGCGATCTATAAATGAACGCTTGTCCCAAACCTTATCTAGAATTAATGTTCTGGAGGCGCAGGTTCTTATTGCTAATGATTTTCATCTTTCTCCTTTTTTTTTCAAATATTATCTAATAGCAGAACTCTTTTGCAGGTTTCATGCCTTAGAGCAGAGCAGACTCAATTAAGCAAAACCCTTGAGAAGGAGAGGCAGAGAGCAGCTGAAATCAGGCAGGAGTATCTGGCAGCAAAAGAGGAAGCTAAGCAATTTAAAGTATGA

mRNA sequence

ATGCGTCTACGTATCCAACACTCTAGGCTTCAGGAAGCAGAAGCGAAAGCTGCTGCTGCTGAAGAAAGAGAGCGATCTATAAATGAACGCTTGTCCCAAACCTTATCTAGAATTAATGTTCTGGAGGCGCAGGTTTCATGCCTTAGAGCAGAGCAGACTCAATTAAGCAAAACCCTTGAGAAGGAGAGGCAGAGAGCAGCTGAAATCAGGCAGGAGTATCTGGCAGCAAAAGAGGAAGCTAAGCAATTTAAAGTATGA

Coding sequence (CDS)

ATGCGTCTACGTATCCAACACTCTAGGCTTCAGGAAGCAGAAGCGAAAGCTGCTGCTGCTGAAGAAAGAGAGCGATCTATAAATGAACGCTTGTCCCAAACCTTATCTAGAATTAATGTTCTGGAGGCGCAGGTTTCATGCCTTAGAGCAGAGCAGACTCAATTAAGCAAAACCCTTGAGAAGGAGAGGCAGAGAGCAGCTGAAATCAGGCAGGAGTATCTGGCAGCAAAAGAGGAAGCTAAGCAATTTAAAGTATGA

Protein sequence

MRLRIQHSRLQEAEAKAAAAEERERSINERLSQTLSRINVLEAQVSCLRAEQTQLSKTLEKERQRAAEIRQEYLAAKEEAKQFKV*

Homology

[Close]

BLAST of CsGy1G020020 vs. ExPASy Swiss-Prot
Match: Q0WVL7 (Golgin candidate 5 OS=Arabidopsis thaliana OX=3702 GN=GC5 PE=1 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 8.4e-25
Identity = 67/77 (87.01%), Postives = 72/77 (93.51%), Query Frame = 0


Query: 4   RIQHSRLQEAEAKAAAAEERERSINERLSQTLSRINVLEAQVSCLRAEQTQLSKTLEKER 63
           R  +SRLQEAE+KAA AEERERS+NERLSQTLSRINVLEAQ+SCLRAEQ QLSK+LEKER
Sbjct: 646 RTLNSRLQEAESKAATAEERERSVNERLSQTLSRINVLEAQLSCLRAEQGQLSKSLEKER 705

Query: 64  QRAAEIRQEYLAAKEEA 81
           QRAAE RQEYLAAKEEA
Sbjct: 706 QRAAENRQEYLAAKEEA 722

[Close]

BLAST of CsGy1G020020 vs. NCBI nr
Match: PNX57139.1 (golgin candidate 5-like protein, partial [Trifolium pratense])

HSP 1 Score: 117 bits (294), Expect = 6.85e-32
Identity = 68/74 (91.89%), Postives = 72/74 (97.30%), Query Frame = 0


Query: 7  HSRLQEAEAKAAAAEERERSINERLSQTLSRINVLEAQVSCLRAEQTQLSKTLEKERQRA 66
          +SRLQEAEAKAA AEERERS+N+RLSQTLSRINVLEAQ+SCLRAEQTQLSKTLEKERQRA
Sbjct: 14 NSRLQEAEAKAATAEERERSVNDRLSQTLSRINVLEAQISCLRAEQTQLSKTLEKERQRA 73

Query: 67 AEIRQEYLAAKEEA 80
          AE RQEYLAAKEEA
Sbjct: 74 AESRQEYLAAKEEA 87

[Close]

BLAST of CsGy1G020020 vs. NCBI nr
Match: XP_038901055.1 (golgin candidate 5 [Benincasa hispida])

HSP 1 Score: 124 bits (310), Expect = 1.44e-30
Identity = 74/77 (96.10%), Postives = 75/77 (97.40%), Query Frame = 0


Query: 4   RIQHSRLQEAEAKAAAAEERERSINERLSQTLSRINVLEAQVSCLRAEQTQLSKTLEKER 63
           R  +SRLQEAEAKAAAAEERERSINERLSQTLSRINVLEAQVSCLRAEQTQLSKTLEKER
Sbjct: 701 RTLNSRLQEAEAKAAAAEERERSINERLSQTLSRINVLEAQVSCLRAEQTQLSKTLEKER 760

Query: 64  QRAAEIRQEYLAAKEEA 80
           QRAAEIRQEYLAAKEEA
Sbjct: 761 QRAAEIRQEYLAAKEEA 777

[Close]

BLAST of CsGy1G020020 vs. NCBI nr
Match: XP_004151124.1 (golgin candidate 5 [Cucumis sativus] >KGN62116.1 hypothetical protein Csa_006436 [Cucumis sativus])

HSP 1 Score: 123 bits (309), Expect = 1.97e-30
Identity = 73/74 (98.65%), Postives = 74/74 (100.00%), Query Frame = 0


Query: 7   HSRLQEAEAKAAAAEERERSINERLSQTLSRINVLEAQVSCLRAEQTQLSKTLEKERQRA 66
           +SRLQEAEAKAAAAEERERSINERLSQTLSRINVLEAQVSCLRAEQTQLSKTLEKERQRA
Sbjct: 704 NSRLQEAEAKAAAAEERERSINERLSQTLSRINVLEAQVSCLRAEQTQLSKTLEKERQRA 763

Query: 67  AEIRQEYLAAKEEA 80
           AEIRQEYLAAKEEA
Sbjct: 764 AEIRQEYLAAKEEA 777

[Close]

BLAST of CsGy1G020020 vs. NCBI nr
Match: XP_008460929.1 (PREDICTED: golgin candidate 5 [Cucumis melo])

HSP 1 Score: 123 bits (309), Expect = 1.97e-30
Identity = 73/74 (98.65%), Postives = 74/74 (100.00%), Query Frame = 0


Query: 7   HSRLQEAEAKAAAAEERERSINERLSQTLSRINVLEAQVSCLRAEQTQLSKTLEKERQRA 66
           +SRLQEAEAKAAAAEERERSINERLSQTLSRINVLEAQVSCLRAEQTQLSKTLEKERQRA
Sbjct: 705 NSRLQEAEAKAAAAEERERSINERLSQTLSRINVLEAQVSCLRAEQTQLSKTLEKERQRA 764

Query: 67  AEIRQEYLAAKEEA 80
           AEIRQEYLAAKEEA
Sbjct: 765 AEIRQEYLAAKEEA 778

[Close]

BLAST of CsGy1G020020 vs. NCBI nr
Match: KAA0045520.1 (golgin candidate 5 [Cucumis melo var. makuwa] >TYK02109.1 golgin candidate 5 [Cucumis melo var. makuwa])

HSP 1 Score: 123 bits (309), Expect = 1.98e-30
Identity = 73/74 (98.65%), Postives = 74/74 (100.00%), Query Frame = 0


Query: 7   HSRLQEAEAKAAAAEERERSINERLSQTLSRINVLEAQVSCLRAEQTQLSKTLEKERQRA 66
           +SRLQEAEAKAAAAEERERSINERLSQTLSRINVLEAQVSCLRAEQTQLSKTLEKERQRA
Sbjct: 820 NSRLQEAEAKAAAAEERERSINERLSQTLSRINVLEAQVSCLRAEQTQLSKTLEKERQRA 879

Query: 67  AEIRQEYLAAKEEA 80
           AEIRQEYLAAKEEA
Sbjct: 880 AEIRQEYLAAKEEA 893

[Close]

BLAST of CsGy1G020020 vs. ExPASy TrEMBL
Match: A0A0A0LZR9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G423040 PE=4 SV=1)

HSP 1 Score: 145 bits (365), Expect = 1.62e-43
Identity = 85/85 (100.00%), Postives = 85/85 (100.00%), Query Frame = 0


Query: 1  MRLRIQHSRLQEAEAKAAAAEERERSINERLSQTLSRINVLEAQVSCLRAEQTQLSKTLE 60
          MRLRIQHSRLQEAEAKAAAAEERERSINERLSQTLSRINVLEAQVSCLRAEQTQLSKTLE
Sbjct: 1  MRLRIQHSRLQEAEAKAAAAEERERSINERLSQTLSRINVLEAQVSCLRAEQTQLSKTLE 60

Query: 61 KERQRAAEIRQEYLAAKEEAKQFKV 85
          KERQRAAEIRQEYLAAKEEAKQFKV
Sbjct: 61 KERQRAAEIRQEYLAAKEEAKQFKV 85

[Close]

BLAST of CsGy1G020020 vs. ExPASy TrEMBL
Match: A0A2K3JSX1 (Golgin candidate 5-like protein (Fragment) OS=Trifolium pratense OX=57577 GN=L195_g058544 PE=4 SV=1)

HSP 1 Score: 117 bits (294), Expect = 3.32e-32
Identity = 68/74 (91.89%), Postives = 72/74 (97.30%), Query Frame = 0


Query: 7  HSRLQEAEAKAAAAEERERSINERLSQTLSRINVLEAQVSCLRAEQTQLSKTLEKERQRA 66
          +SRLQEAEAKAA AEERERS+N+RLSQTLSRINVLEAQ+SCLRAEQTQLSKTLEKERQRA
Sbjct: 14 NSRLQEAEAKAATAEERERSVNDRLSQTLSRINVLEAQISCLRAEQTQLSKTLEKERQRA 73

Query: 67 AEIRQEYLAAKEEA 80
          AE RQEYLAAKEEA
Sbjct: 74 AESRQEYLAAKEEA 87

[Close]

BLAST of CsGy1G020020 vs. ExPASy TrEMBL
Match: A0A0A0LQ56 (TMF_TATA_bd domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G299360 PE=4 SV=1)

HSP 1 Score: 123 bits (309), Expect = 9.54e-31
Identity = 73/74 (98.65%), Postives = 74/74 (100.00%), Query Frame = 0


Query: 7   HSRLQEAEAKAAAAEERERSINERLSQTLSRINVLEAQVSCLRAEQTQLSKTLEKERQRA 66
           +SRLQEAEAKAAAAEERERSINERLSQTLSRINVLEAQVSCLRAEQTQLSKTLEKERQRA
Sbjct: 704 NSRLQEAEAKAAAAEERERSINERLSQTLSRINVLEAQVSCLRAEQTQLSKTLEKERQRA 763

Query: 67  AEIRQEYLAAKEEA 80
           AEIRQEYLAAKEEA
Sbjct: 764 AEIRQEYLAAKEEA 777

[Close]

BLAST of CsGy1G020020 vs. ExPASy TrEMBL
Match: A0A1S3CE12 (golgin candidate 5 OS=Cucumis melo OX=3656 GN=LOC103499665 PE=4 SV=1)

HSP 1 Score: 123 bits (309), Expect = 9.54e-31
Identity = 73/74 (98.65%), Postives = 74/74 (100.00%), Query Frame = 0


Query: 7   HSRLQEAEAKAAAAEERERSINERLSQTLSRINVLEAQVSCLRAEQTQLSKTLEKERQRA 66
           +SRLQEAEAKAAAAEERERSINERLSQTLSRINVLEAQVSCLRAEQTQLSKTLEKERQRA
Sbjct: 705 NSRLQEAEAKAAAAEERERSINERLSQTLSRINVLEAQVSCLRAEQTQLSKTLEKERQRA 764

Query: 67  AEIRQEYLAAKEEA 80
           AEIRQEYLAAKEEA
Sbjct: 765 AEIRQEYLAAKEEA 778

[Close]

BLAST of CsGy1G020020 vs. ExPASy TrEMBL
Match: A0A5D3BVJ8 (Golgin candidate 5 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold680G00970 PE=4 SV=1)

HSP 1 Score: 123 bits (309), Expect = 9.58e-31
Identity = 73/74 (98.65%), Postives = 74/74 (100.00%), Query Frame = 0


Query: 7   HSRLQEAEAKAAAAEERERSINERLSQTLSRINVLEAQVSCLRAEQTQLSKTLEKERQRA 66
           +SRLQEAEAKAAAAEERERSINERLSQTLSRINVLEAQVSCLRAEQTQLSKTLEKERQRA
Sbjct: 820 NSRLQEAEAKAAAAEERERSINERLSQTLSRINVLEAQVSCLRAEQTQLSKTLEKERQRA 879

Query: 67  AEIRQEYLAAKEEA 80
           AEIRQEYLAAKEEA
Sbjct: 880 AEIRQEYLAAKEEA 893

[Close]

BLAST of CsGy1G020020 vs. TAIR 10
Match: AT1G79830.1 (golgin candidate 5 )

HSP 1 Score: 114.0 bits (284), Expect = 6.0e-26
Identity = 67/77 (87.01%), Postives = 72/77 (93.51%), Query Frame = 0


Query: 4   RIQHSRLQEAEAKAAAAEERERSINERLSQTLSRINVLEAQVSCLRAEQTQLSKTLEKER 63
           R  +SRLQEAE+KAA AEERERS+NERLSQTLSRINVLEAQ+SCLRAEQ QLSK+LEKER
Sbjct: 646 RTLNSRLQEAESKAATAEERERSVNERLSQTLSRINVLEAQLSCLRAEQGQLSKSLEKER 705

Query: 64  QRAAEIRQEYLAAKEEA 81
           QRAAE RQEYLAAKEEA
Sbjct: 706 QRAAENRQEYLAAKEEA 722

[Close]

BLAST of CsGy1G020020 vs. TAIR 10
Match: AT1G79830.2 (golgin candidate 5 )

HSP 1 Score: 114.0 bits (284), Expect = 6.0e-26
Identity = 67/77 (87.01%), Postives = 72/77 (93.51%), Query Frame = 0


Query: 4   RIQHSRLQEAEAKAAAAEERERSINERLSQTLSRINVLEAQVSCLRAEQTQLSKTLEKER 63
           R  +SRLQEAE+KAA AEERERS+NERLSQTLSRINVLEAQ+SCLRAEQ QLSK+LEKER
Sbjct: 646 RTLNSRLQEAESKAATAEERERSVNERLSQTLSRINVLEAQLSCLRAEQGQLSKSLEKER 705

Query: 64  QRAAEIRQEYLAAKEEA 81
           QRAAE RQEYLAAKEEA
Sbjct: 706 QRAAENRQEYLAAKEEA 722

[Close]

BLAST of CsGy1G020020 vs. TAIR 10
Match: AT1G79830.4 (golgin candidate 5 )

HSP 1 Score: 114.0 bits (284), Expect = 6.0e-26
Identity = 67/77 (87.01%), Postives = 72/77 (93.51%), Query Frame = 0


Query: 4   RIQHSRLQEAEAKAAAAEERERSINERLSQTLSRINVLEAQVSCLRAEQTQLSKTLEKER 63
           R  +SRLQEAE+KAA AEERERS+NERLSQTLSRINVLEAQ+SCLRAEQ QLSK+LEKER
Sbjct: 666 RTLNSRLQEAESKAATAEERERSVNERLSQTLSRINVLEAQLSCLRAEQGQLSKSLEKER 725

Query: 64  QRAAEIRQEYLAAKEEA 81
           QRAAE RQEYLAAKEEA
Sbjct: 726 QRAAENRQEYLAAKEEA 742

[Close]

BLAST of CsGy1G020020 vs. TAIR 10
Match: AT1G79830.3 (golgin candidate 5 )

HSP 1 Score: 114.0 bits (284), Expect = 6.0e-26
Identity = 67/77 (87.01%), Postives = 72/77 (93.51%), Query Frame = 0


Query: 4   RIQHSRLQEAEAKAAAAEERERSINERLSQTLSRINVLEAQVSCLRAEQTQLSKTLEKER 63
           R  +SRLQEAE+KAA AEERERS+NERLSQTLSRINVLEAQ+SCLRAEQ QLSK+LEKER
Sbjct: 646 RTLNSRLQEAESKAATAEERERSVNERLSQTLSRINVLEAQLSCLRAEQGQLSKSLEKER 705

Query: 64  QRAAEIRQEYLAAKEEA 81
           QRAAE RQEYLAAKEEA
Sbjct: 706 QRAAENRQEYLAAKEEA 722

The following BLAST results are available for this feature:

BLAST of CsGy1G020020 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q0WVL7	8.4e-25	87.01	Golgin candidate 5 OS=Arabidopsis thaliana OX=3702 GN=GC5 PE=1 SV=1	[more]

BLAST of CsGy1G020020 vs. NCBI nr


Match Name	E-value	Identity	Description
PNX57139.1	6.85e-32	91.89	golgin candidate 5-like protein, partial [Trifolium pratense]	[more]
XP_038901055.1	1.44e-30	96.10	golgin candidate 5 [Benincasa hispida]	[more]
XP_004151124.1	1.97e-30	98.65	golgin candidate 5 [Cucumis sativus] >KGN62116.1 hypothetical protein Csa_006436...	[more]
XP_008460929.1	1.97e-30	98.65	PREDICTED: golgin candidate 5 [Cucumis melo]	[more]
KAA0045520.1	1.98e-30	98.65	golgin candidate 5 [Cucumis melo var. makuwa] >TYK02109.1 golgin candidate 5 [Cu...	[more]

BLAST of CsGy1G020020 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LZR9	1.62e-43	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G423040 PE=4 SV=1	[more]
A0A2K3JSX1	3.32e-32	91.89	Golgin candidate 5-like protein (Fragment) OS=Trifolium pratense OX=57577 GN=L19...	[more]
A0A0A0LQ56	9.54e-31	98.65	TMF_TATA_bd domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G299360...	[more]
A0A1S3CE12	9.54e-31	98.65	golgin candidate 5 OS=Cucumis melo OX=3656 GN=LOC103499665 PE=4 SV=1	[more]
A0A5D3BVJ8	9.58e-31	98.65	Golgin candidate 5 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold680G0...	[more]

BLAST of CsGy1G020020 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G79830.1	6.0e-26	87.01	golgin candidate 5	[more]
AT1G79830.2	6.0e-26	87.01	golgin candidate 5	[more]
AT1G79830.4	6.0e-26	87.01	golgin candidate 5	[more]
AT1G79830.3	6.0e-26	87.01	golgin candidate 5	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 3..85
None	No IPR available	PANTHER	PTHR47347	GOLGIN CANDIDATE 5	coord: 7..82

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy1G020020.1	CsGy1G020020.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005794	Golgi apparatus