CsGy1G019078 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy1G019078
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	Reverse transcriptase Ty1/copia-type domain-containing protein
Location	Gy14Chr1: 17464159 .. 17464382 (-)
RNA-Seq Expression	CsGy1G019078
Synteny	CsGy1G019078

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTGATTGCAATGCCACAAAGTACCTGATGGAACCCAAGGCACAACTTCACAAAGACATGGAAGGAGCATCAATTGATGCTACAGAGTACAGAAGCATCGTTGGTTGTCTTAGATACTTACTGAAGACAAGGCCAGATCTTTCATATGTTGTTGGGATGGCGAGTAGGTATATGGAAAGGCCTACAACCATGCATTACAAGGTGGTCAAGCAAATACTTAG

mRNA sequence

ATGGTTGATTGCAATGCCACAAAGTACCTGATGGAACCCAAGGCACAACTTCACAAAGACATGGAAGGAGCATCAATTGATGCTACAGAGTACAGAAGCATCGTTGGTTGTCTTAGATACTTACTGAAGACAAGGCCAGATCTTTCATATGTTGTTGGGATGGCGAGTAGGTATATGGAAAGGCCTACAACCATGCATTACAAGGTGGTCAAGCAAATACTTAG

Coding sequence (CDS)

ATGGTTGATTGCAATGCCACAAAGTACCTGATGGAACCCAAGGCACAACTTCACAAAGACATGGAAGGAGCATCAATTGATGCTACAGAGTACAGAAGCATCGTTGGTTGTCTTAGATACTTACTGAAGACAAGGCCAGATCTTTCATATGTTGTTGGGATGGCGAGTAGGTATATGGAAAGGCCTACAACCATGCATTACAAGGTGGTCAAGCAAATACTTAG

Protein sequence

MVDCNATKYLMEPKAQLHKDMEGASIDATEYRSIVGCLRYLLKTRPDLSYVVGMASRYMERPTTMHYKVVKQILX

Homology

[Close]

BLAST of CsGy1G019078 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 1.9e-09
Identity = 34/70 (48.57%), Postives = 41/70 (58.57%), Query Frame = 0


Query: 6    ATKYLMEPKAQLHKDMEGASI-DATEYRSIVGCLRYLLKTRPDLSYVVGMASRYMERPTT 65
            AT     PK  LH    G  + D TEYR IVG L+YL  TRPDLSY V   S+YM  PT 
Sbjct: 1205 ATPMATSPKLTLH---SGTKLPDPTEYRGIVGSLQYLAFTRPDLSYAVNRLSQYMHMPTD 1264

Query: 66   MHYKVVKQIL 75
             H+  +K++L
Sbjct: 1265 DHWNALKRVL 1271

[Close]

BLAST of CsGy1G019078 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 1.8e-07
Identity = 26/48 (54.17%), Postives = 33/48 (68.75%), Query Frame = 0


Query: 27   DATEYRSIVGCLRYLLKTRPDLSYVVGMASRYMERPTTMHYKVVKQIL 75
            D TEYR IVG L+YL  TRPD+SY V   S++M  PT  H + +K+IL
Sbjct: 1241 DPTEYRGIVGSLQYLAFTRPDISYAVNRLSQFMHMPTEEHLQALKRIL 1288

[Close]

BLAST of CsGy1G019078 vs. ExPASy Swiss-Prot
Match: P92519 (Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana OX=3702 GN=AtMg00810 PE=4 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 1.7e-05
Identity = 21/48 (43.75%), Postives = 33/48 (68.75%), Query Frame = 0


Query: 27  DATEYRSIVGCLRYLLKTRPDLSYVVGMASRYMERPTTMHYKVVKQIL 75
           D +++RSIVG L+YL  TRPD+SY V +  + M  PT   + ++K++L
Sbjct: 96  DPSDFRSIVGALQYLTLTRPDISYAVNIVCQRMHEPTLADFDLLKRVL 143

[Close]

BLAST of CsGy1G019078 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 44.7 bits (104), Expect = 5.5e-04
Identity = 22/54 (40.74%), Postives = 34/54 (62.96%), Query Frame = 0


Query: 22   EGASIDATEYRSIVGCLRY-LLKTRPDLSYVVGMASRYMERPTTMHYKVVKQIL 75
            E  ++    Y S VG L Y ++ TRPD+++ VG+ SR++E P   H++ VK IL
Sbjct: 1102 EKGNMAKVPYSSAVGSLMYAMVCTRPDIAHAVGVVSRFLENPGKEHWEAVKWIL 1155

[Close]

BLAST of CsGy1G019078 vs. NCBI nr
Match: KAE8653115.1 (hypothetical protein Csa_019554, partial [Cucumis sativus])

HSP 1 Score: 147 bits (371), Expect = 1.86e-44
Identity = 71/74 (95.95%), Postives = 71/74 (95.95%), Query Frame = 0


Query: 1  MVDCNATKYLMEPKAQLHKDMEGASIDATEYRSIVGCLRYLLKTRPDLSYVVGMASRYME 60
          M DCNATKY MEPKAQLHKDMEGA IDATEYRSIVGCLRYLLKTRPDLSYVVGMASRYME
Sbjct: 1  MADCNATKYPMEPKAQLHKDMEGAPIDATEYRSIVGCLRYLLKTRPDLSYVVGMASRYME 60

Query: 61 RPTTMHYKVVKQIL 74
          RPTTMHYKVVKQIL
Sbjct: 61 RPTTMHYKVVKQIL 74

[Close]

BLAST of CsGy1G019078 vs. NCBI nr
Match: KAE8648097.1 (hypothetical protein Csa_004708 [Cucumis sativus])

HSP 1 Score: 148 bits (373), Expect = 7.28e-44
Identity = 71/74 (95.95%), Postives = 71/74 (95.95%), Query Frame = 0


Query: 1  MVDCNATKYLMEPKAQLHKDMEGASIDATEYRSIVGCLRYLLKTRPDLSYVVGMASRYME 60
          M DCNATKYLMEPKAQLHKDMEGA IDATEYRSIVGCLRYLL TRPDLSYVVGMASRYME
Sbjct: 1  MADCNATKYLMEPKAQLHKDMEGAPIDATEYRSIVGCLRYLLNTRPDLSYVVGMASRYME 60

Query: 61 RPTTMHYKVVKQIL 74
          RPTTMHYKVVKQIL
Sbjct: 61 RPTTMHYKVVKQIL 74

[Close]

BLAST of CsGy1G019078 vs. NCBI nr
Match: KAE8648103.1 (hypothetical protein Csa_004691, partial [Cucumis sativus])

HSP 1 Score: 145 bits (366), Expect = 1.08e-43
Identity = 70/74 (94.59%), Postives = 71/74 (95.95%), Query Frame = 0


Query: 1  MVDCNATKYLMEPKAQLHKDMEGASIDATEYRSIVGCLRYLLKTRPDLSYVVGMASRYME 60
          MVDCNATKY MEPKAQLHKDMEGA IDATEYRSIVGCLRYLL TRPDLSYVVGMASRY+E
Sbjct: 1  MVDCNATKYPMEPKAQLHKDMEGAPIDATEYRSIVGCLRYLLNTRPDLSYVVGMASRYIE 60

Query: 61 RPTTMHYKVVKQIL 74
          RPTTMHYKVVKQIL
Sbjct: 61 RPTTMHYKVVKQIL 74

[Close]

BLAST of CsGy1G019078 vs. NCBI nr
Match: KAE8652919.1 (hypothetical protein Csa_004527, partial [Cucumis sativus])

HSP 1 Score: 141 bits (356), Expect = 3.63e-42
Identity = 68/74 (91.89%), Postives = 68/74 (91.89%), Query Frame = 0


Query: 1  MVDCNATKYLMEPKAQLHKDMEGASIDATEYRSIVGCLRYLLKTRPDLSYVVGMASRYME 60
          M DCNATKY MEPKAQLHKD EGA IDATEYRSIVGCLRYLL TRPDLSY VGMASRYME
Sbjct: 1  MADCNATKYPMEPKAQLHKDTEGAPIDATEYRSIVGCLRYLLNTRPDLSYAVGMASRYME 60

Query: 61 RPTTMHYKVVKQIL 74
          RPTTMHYKVVKQIL
Sbjct: 61 RPTTMHYKVVKQIL 74

[Close]

BLAST of CsGy1G019078 vs. NCBI nr
Match: KAE8646020.1 (hypothetical protein Csa_015698 [Cucumis sativus])

HSP 1 Score: 141 bits (356), Expect = 4.57e-42
Identity = 68/74 (91.89%), Postives = 68/74 (91.89%), Query Frame = 0


Query: 1  MVDCNATKYLMEPKAQLHKDMEGASIDATEYRSIVGCLRYLLKTRPDLSYVVGMASRYME 60
          M DCNATKY MEPKAQLHKD EGA IDATEYRSIVGCLRYLL TRPDLSY VGMASRYME
Sbjct: 1  MADCNATKYPMEPKAQLHKDTEGAPIDATEYRSIVGCLRYLLNTRPDLSYAVGMASRYME 60

Query: 61 RPTTMHYKVVKQIL 74
          RPTTMHYKVVKQIL
Sbjct: 61 RPTTMHYKVVKQIL 74

[Close]

BLAST of CsGy1G019078 vs. ExPASy TrEMBL
Match: Q7XMW3 (OSJNBb0040D15.11 protein OS=Oryza sativa subsp. japonica OX=39947 GN=OSJNBb0040D15.11 PE=4 SV=2)

HSP 1 Score: 111 bits (278), Expect = 9.86e-28
Identity = 48/74 (64.86%), Postives = 62/74 (83.78%), Query Frame = 0


Query: 1   MVDCNATKYLMEPKAQLHKDMEGASIDATEYRSIVGCLRYLLKTRPDLSYVVGMASRYME 60
           M+DCN+T   +E ++QLHKD EG+++D TEYR ++GCLRYLL TRPDLSY VG+ SR+ME
Sbjct: 95  MLDCNSTSIPIEHRSQLHKDAEGSTVDPTEYRRLIGCLRYLLHTRPDLSYAVGVVSRFME 154

Query: 61  RPTTMHYKVVKQIL 74
           RPT MH+K +KQIL
Sbjct: 155 RPTVMHFKALKQIL 168

[Close]

BLAST of CsGy1G019078 vs. ExPASy TrEMBL
Match: A0A0A9FJ50 (Reverse transcriptase Ty1/copia-type domain-containing protein OS=Arundo donax OX=35708 PE=4 SV=1)

HSP 1 Score: 111 bits (277), Expect = 1.16e-27
Identity = 52/74 (70.27%), Postives = 61/74 (82.43%), Query Frame = 0


Query: 1   MVDCNATKYLMEPKAQLHKDMEGASIDATEYRSIVGCLRYLLKTRPDLSYVVGMASRYME 60
           M D N TKY ME KAQ+HKD +G  +DATEYR +VGCLRYLL TRPDLS+ VG+ASR+ME
Sbjct: 81  MEDYNPTKYPMEHKAQVHKDSDGQPVDATEYRRVVGCLRYLLHTRPDLSHAVGVASRHME 140

Query: 61  RPTTMHYKVVKQIL 74
           RPT MH K+VKQ+L
Sbjct: 141 RPTVMHQKLVKQML 154

[Close]

BLAST of CsGy1G019078 vs. ExPASy TrEMBL
Match: A0A5K0VEQ6 (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) OS=Nymphaea colorata OX=210225 GN=NYM_LOCUS1129 PE=4 SV=1)

HSP 1 Score: 112 bits (280), Expect = 1.64e-27
Identity = 51/74 (68.92%), Postives = 60/74 (81.08%), Query Frame = 0


Query: 1   MVDCNATKYLMEPKAQLHKDMEGASIDATEYRSIVGCLRYLLKTRPDLSYVVGMASRYME 60
           M DCN TK  MEP++QL+KD EG  +DATEYR  +GCLRYL+ TRPDL Y VG+ASR+ME
Sbjct: 202 MFDCNPTKIPMEPRSQLNKDPEGQPVDATEYRRFIGCLRYLVHTRPDLLYAVGVASRFME 261

Query: 61  RPTTMHYKVVKQIL 74
           RPT MH+K VKQIL
Sbjct: 262 RPTVMHHKAVKQIL 275

[Close]

BLAST of CsGy1G019078 vs. ExPASy TrEMBL
Match: Q0J8A6 (Os08g0125300 protein OS=Oryza sativa subsp. japonica OX=39947 GN=Os08g0125300 PE=2 SV=1)

HSP 1 Score: 110 bits (274), Expect = 3.23e-26
Identity = 51/74 (68.92%), Postives = 58/74 (78.38%), Query Frame = 0


Query: 1    MVDCNATKYLMEPKAQLHKDMEGASIDATEYRSIVGCLRYLLKTRPDLSYVVGMASRYME 60
            M  CN T   MEP++ LHKD +G  IDATEYR ++GCLRYLL TRPDLSY VG+ASR+ME
Sbjct: 1173 MQGCNPTSIPMEPRSLLHKDADGNPIDATEYRRVIGCLRYLLHTRPDLSYAVGVASRFME 1232

Query: 61   RPTTMHYKVVKQIL 74
            RPTTMH K VK IL
Sbjct: 1233 RPTTMHLKAVKMIL 1246

[Close]

BLAST of CsGy1G019078 vs. ExPASy TrEMBL
Match: B8BDZ6 (Uncharacterized protein OS=Oryza sativa subsp. indica OX=39946 GN=OsI_30754 PE=4 SV=1)

HSP 1 Score: 110 bits (274), Expect = 3.23e-26
Identity = 51/74 (68.92%), Postives = 58/74 (78.38%), Query Frame = 0


Query: 1    MVDCNATKYLMEPKAQLHKDMEGASIDATEYRSIVGCLRYLLKTRPDLSYVVGMASRYME 60
            M  CN T   MEP++ LHKD +G  IDATEYR ++GCLRYLL TRPDLSY VG+ASR+ME
Sbjct: 1173 MQGCNPTSIPMEPRSLLHKDADGNPIDATEYRRVIGCLRYLLHTRPDLSYAVGVASRFME 1232

Query: 61   RPTTMHYKVVKQIL 74
            RPTTMH K VK IL
Sbjct: 1233 RPTTMHLKAVKMIL 1246

[Close]

BLAST of CsGy1G019078 vs. TAIR 10
Match: ATMG00810.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 49.7 bits (117), Expect = 1.2e-06
Identity = 21/48 (43.75%), Postives = 33/48 (68.75%), Query Frame = 0


Query: 27  DATEYRSIVGCLRYLLKTRPDLSYVVGMASRYMERPTTMHYKVVKQIL 75
           D +++RSIVG L+YL  TRPD+SY V +  + M  PT   + ++K++L
Sbjct: 96  DPSDFRSIVGALQYLTLTRPDISYAVNIVCQRMHEPTLADFDLLKRVL 143

[Close]

BLAST of CsGy1G019078 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 49.3 bits (116), Expect = 1.6e-06
Identity = 24/74 (32.43%), Postives = 37/74 (50.00%), Query Frame = 0


Query: 1   MVDCNATKYLMEPKAQLHKDMEGASIDATEYRSIVGCLRYLLKTRPDLSYVVGMASRYME 60
           ++ C  +   M+P         G  +DA  YR ++G L YL  TR D+S+ V   S++ E
Sbjct: 348 LLGCKPSSVPMDPSVTFSAHSGGDFVDAKAYRRLIGRLMYLQITRLDISFAVNKLSQFSE 407

Query: 61  RPTTMHYKVVKQIL 75
            P   H + V +IL
Sbjct: 408 APRLAHQQAVMKIL 421

The following BLAST results are available for this feature:

BLAST of CsGy1G019078 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9ZT94	1.9e-09	48.57	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
Q94HW2	1.8e-07	54.17	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
P92519	1.7e-05	43.75	Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana OX=3702 ...	[more]
P10978	5.5e-04	40.74	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]

BLAST of CsGy1G019078 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8653115.1	1.86e-44	95.95	hypothetical protein Csa_019554, partial [Cucumis sativus]	[more]
KAE8648097.1	7.28e-44	95.95	hypothetical protein Csa_004708 [Cucumis sativus]	[more]
KAE8648103.1	1.08e-43	94.59	hypothetical protein Csa_004691, partial [Cucumis sativus]	[more]
KAE8652919.1	3.63e-42	91.89	hypothetical protein Csa_004527, partial [Cucumis sativus]	[more]
KAE8646020.1	4.57e-42	91.89	hypothetical protein Csa_015698 [Cucumis sativus]	[more]

BLAST of CsGy1G019078 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
Q7XMW3	9.86e-28	64.86	OSJNBb0040D15.11 protein OS=Oryza sativa subsp. japonica OX=39947 GN=OSJNBb0040D...	[more]
A0A0A9FJ50	1.16e-27	70.27	Reverse transcriptase Ty1/copia-type domain-containing protein OS=Arundo donax O...	[more]
A0A5K0VEQ6	1.64e-27	68.92	Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) OS=Nym...	[more]
Q0J8A6	3.23e-26	68.92	Os08g0125300 protein OS=Oryza sativa subsp. japonica OX=39947 GN=Os08g0125300 PE...	[more]
B8BDZ6	3.23e-26	68.92	Uncharacterized protein OS=Oryza sativa subsp. indica OX=39946 GN=OsI_30754 PE=4...	[more]

BLAST of CsGy1G019078 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00810.1	1.2e-06	43.75	DNA/RNA polymerases superfamily protein	[more]
AT4G23160.1	1.6e-06	32.43	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy1G019078.1	CsGy1G019078.1	mRNA