CsGy1G018740 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy1G018740
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	Pentatricopeptide repeat-containing protein
Location	Gy14Chr1: 16934225 .. 16934932 (-)
RNA-Seq Expression	CsGy1G018740
Synteny	CsGy1G018740

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTATGCTAAATTTGAGTTTATGCAAGATGCGTCAAGAGTGTTCATCGAACTTCCATACAGAGAGATAATATCATGGAATGCCTTAATTTCTGGGTATGCTCAAAATGCTTTATGCCAAGAAGCTTTAGAGGCATTTCTTTATGCAGTAATGGAATATAAGCCAAACGAATACACCTTTGGGAGTGTCCTGAATGCAATCAGTGCCGGCGAAGAAGACATACCTTTAAAGCATGGCCAACGTTGCCATTCTCATTTGATTAAAGTTGGACTGAACTTCGACCCTATAATTTCAGGTGCCCTCCTAGACATGTATGCAAAGCGTGGGAGCATTCAAGAGTCCCAAAGAGTATTTAATAAAACATCCAAACAAAGTCAATTGGCTTGGACTGTGCTGATCTTTGACTACGCACAACACGGGGGACTATATTTTTATGTTTCTTTTATAGAAAAATATGTGTTCCAAAATTTTGGATTTAACTTTCATTTAGTCTATAAATTTCAAAAGGTTAGACATTTAGTTAAAAGTTTTATTTCAAATTTAGTTCCTCAGTTTTCAAAAAATACAACTATTACCAGGCTAATGTTTGATTATTATTTTTATTGCTATTAAAATTAAATTCATAAAATTTTACTTAAAACTAAAGATAAAAGTAAAATAATTACAATTTGAAATCTGAAGACTATGGTTAAGGGGAGAGGTGGTTGA

mRNA sequence

ATGTATGCTAAATTTGAGTTTATGCAAGATGCGTCAAGAGTGTTCATCGAACTTCCATACAGAGAGATAATATCATGGAATGCCTTAATTTCTGGGTATGCTCAAAATGCTTTATGCCAAGAAGCTTTAGAGGCATTTCTTTATGCAGTAATGGAATATAAGCCAAACGAATACACCTTTGGGAGTGTCCTGAATGCAATCAGTGCCGGCGAAGAAGACATACCTTTAAAGCATGGCCAACGTTGCCATTCTCATTTGATTAAAGTTGGACTGAACTTCGACCCTATAATTTCAGGTGCCCTCCTAGACATGTATGCAAAGCGTGGGAGCATTCAAGAGTCCCAAAGAGTATTTAATAAAACATCCAAACAAAGTCAATTGGCTTGGACTACTATGGTTAAGGGGAGAGGTGGTTGA

Coding sequence (CDS)

ATGTATGCTAAATTTGAGTTTATGCAAGATGCGTCAAGAGTGTTCATCGAACTTCCATACAGAGAGATAATATCATGGAATGCCTTAATTTCTGGGTATGCTCAAAATGCTTTATGCCAAGAAGCTTTAGAGGCATTTCTTTATGCAGTAATGGAATATAAGCCAAACGAATACACCTTTGGGAGTGTCCTGAATGCAATCAGTGCCGGCGAAGAAGACATACCTTTAAAGCATGGCCAACGTTGCCATTCTCATTTGATTAAAGTTGGACTGAACTTCGACCCTATAATTTCAGGTGCCCTCCTAGACATGTATGCAAAGCGTGGGAGCATTCAAGAGTCCCAAAGAGTATTTAATAAAACATCCAAACAAAGTCAATTGGCTTGGACTACTATGGTTAAGGGGAGAGGTGGTTGA

Protein sequence

MYAKFEFMQDASRVFIELPYREIISWNALISGYAQNALCQEALEAFLYAVMEYKPNEYTFGSVLNAISAGEEDIPLKHGQRCHSHLIKVGLNFDPIISGALLDMYAKRGSIQESQRVFNKTSKQSQLAWTTMVKGRGG*

Homology

[Close]

BLAST of CsGy1G018740 vs. ExPASy Swiss-Prot
Match: Q84MA3 (Pentatricopeptide repeat-containing protein At4g32430, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PCMP-E40 PE=2 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 3.2e-42
Identity = 80/133 (60.15%), Postives = 106/133 (79.70%), Query Frame = 0


Query: 1   MYAKFEFMQDASRVFIELPYREIISWNALISGYAQNALCQEALEAFLYAVMEYKPNEYTF 60
           +YAKFE ++DA + F ++ +REIISWNA+ISG+AQN    EAL+ FL A  E  PNEYTF
Sbjct: 416 LYAKFEALEDAKKAFEDITFREIISWNAMISGFAQNGFSHEALKMFLSAAAETMPNEYTF 475

Query: 61  GSVLNAISAGEEDIPLKHGQRCHSHLIKVGLNFDPIISGALLDMYAKRGSIQESQRVFNK 120
           GSVLNAI A  EDI +K GQRCH+HL+K+GLN  P++S ALLDMYAKRG+I ES++VFN+
Sbjct: 476 GSVLNAI-AFAEDISVKQGQRCHAHLLKLGLNSCPVVSSALLDMYAKRGNIDESEKVFNE 535

Query: 121 TSKQSQLAWTTMV 134
            S+++Q  WT+++
Sbjct: 536 MSQKNQFVWTSII 547

[Close]

BLAST of CsGy1G018740 vs. ExPASy Swiss-Prot
Match: O04659 (Pentatricopeptide repeat-containing protein At5g27110 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E14 PE=2 SV=2)

HSP 1 Score: 94.0 bits (232), Expect = 1.5e-18
Identity = 49/135 (36.30%), Postives = 79/135 (58.52%), Query Frame = 0


Query: 1   MYAKFEFMQDASRVFIELPYREIISWNALISGYAQNALCQEALEAFLYAVMEYKPNEYTF 60
           MYAKF   +++ +VF E+P R++ SWN +IS + Q+   ++ALE  L+  ME    E   
Sbjct: 151 MYAKFNLFENSLQVFDEMPERDVASWNTVISCFYQSGEAEKALE--LFGRMESSGFEPNS 210

Query: 61  GSVLNAISAGEEDIPLKHGQRCHSHLIKVGLNFDPIISGALLDMYAKRGSIQESQRVFNK 120
            S+  AISA    + L+ G+  H   +K G   D  ++ AL+DMY K   ++ ++ VF K
Sbjct: 211 VSLTVAISACSRLLWLERGKEIHRKCVKKGFELDEYVNSALVDMYGKCDCLEVAREVFQK 270

Query: 121 TSKQSQLAWTTMVKG 136
             ++S +AW +M+KG
Sbjct: 271 MPRKSLVAWNSMIKG 283

[Close]

BLAST of CsGy1G018740 vs. ExPASy Swiss-Prot
Match: Q9ZUW3 (Pentatricopeptide repeat-containing protein At2g27610 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H60 PE=2 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 9.4e-18
Identity = 44/135 (32.59%), Postives = 82/135 (60.74%), Query Frame = 0


Query: 2   YAKFEFMQDASRVFIELPYREIISWNALISGYAQNALCQEALEAFLYAVM-EYKPNEYTF 61
           Y K   +++A++VF  +  ++I++W+A+++GYAQ    + A++ F        KPNE+TF
Sbjct: 438 YVKLGKVEEAAKVFSGIDDKDIVAWSAMLAGYAQTGETEAAIKMFGELTKGGIKPNEFTF 497

Query: 62  GSVLNAISAGEEDIPLKHGQRCHSHLIKVGLNFDPIISGALLDMYAKRGSIQESQRVFNK 121
            S+LN  +A   +  +  G++ H   IK  L+    +S ALL MYAK+G+I+ ++ VF +
Sbjct: 498 SSILNVCAA--TNASMGQGKQFHGFAIKSRLDSSLCVSSALLTMYAKKGNIESAEEVFKR 557

Query: 122 TSKQSQLAWTTMVKG 136
             ++  ++W +M+ G
Sbjct: 558 QREKDLVSWNSMISG 570

[Close]

BLAST of CsGy1G018740 vs. ExPASy Swiss-Prot
Match: O23169 (Pentatricopeptide repeat-containing protein At4g37170 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H5 PE=3 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 9.4e-18
Identity = 48/163 (29.45%), Postives = 86/163 (52.76%), Query Frame = 0


Query: 1   MYAKFEFMQDASRVFIELPYREIISWNALISGYAQNALCQEALEAF-------------- 60
           MYAK   + DA +VF E+P R++ SWN +++GYA+  L +EA + F              
Sbjct: 129 MYAKCGSLVDARKVFDEMPNRDLCSWNVMVNGYAEVGLLEEARKLFDEMTEKDSYSWTAM 188

Query: 61  ---------------LYAVMEYKPNEY-TFGSVLNAISAGEEDIPLKHGQRCHSHLIKVG 120
                          LY++M+  PN      +V  A++A      ++ G+  H H+++ G
Sbjct: 189 VTGYVKKDQPEEALVLYSLMQRVPNSRPNIFTVSIAVAAAAAVKCIRRGKEIHGHIVRAG 248

Query: 121 LNFDPIISGALLDMYAKRGSIQESQRVFNKTSKQSQLAWTTMV 134
           L+ D ++  +L+DMY K G I E++ +F+K  ++  ++WT+M+
Sbjct: 249 LDSDEVLWSSLMDMYGKCGCIDEARNIFDKIVEKDVVSWTSMI 291

[Close]

BLAST of CsGy1G018740 vs. ExPASy Swiss-Prot
Match: Q9LYV3 (Putative pentatricopeptide repeat-containing protein At5g13230, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PCMP-H89 PE=3 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 9.4e-18
Identity = 42/136 (30.88%), Postives = 81/136 (59.56%), Query Frame = 0


Query: 1   MYAKFEFMQDASRVFIELPYREIISWNALISGYAQNALCQEALEAFLYAVMEY-KPNEYT 60
           +Y +   M DA +VF E+P  +++ W+ +I+ + QN  C EA++ F+     +  PNE+T
Sbjct: 291 LYTQLGDMSDAFKVFNEMPKNDVVPWSFMIARFCQNGFCNEAVDLFIRMREAFVVPNEFT 350

Query: 61  FGSVLNAISAGEEDIPLKHGQRCHSHLIKVGLNFDPIISGALLDMYAKRGSIQESQRVFN 120
             S+LN  + G+       G++ H  ++KVG + D  +S AL+D+YAK   +  + ++F 
Sbjct: 351 LSSILNGCAIGKCS---GLGEQLHGLVVKVGFDLDIYVSNALIDVYAKCEKMDTAVKLFA 410

Query: 121 KTSKQSQLAWTTMVKG 136
           + S +++++W T++ G
Sbjct: 411 ELSSKNEVSWNTVIVG 423

[Close]

BLAST of CsGy1G018740 vs. NCBI nr
Match: KAE8653088.1 (hypothetical protein Csa_020070 [Cucumis sativus])

HSP 1 Score: 236 bits (601), Expect = 1.66e-77
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 0


Query: 1   MYAKFEFMQDASRVFIELPYREIISWNALISGYAQNALCQEALEAFLYAVMEYKPNEYTF 60
           MYAKFEFMQDASRVFIELPYREIISWNALISGYAQNALCQEALEAFLYAVMEYKPNEYTF
Sbjct: 1   MYAKFEFMQDASRVFIELPYREIISWNALISGYAQNALCQEALEAFLYAVMEYKPNEYTF 60

Query: 61  GSVLNAISAGEEDIPLKHGQRCHSHLIKVGLNFDPIISGALLDMYAKRGSIQESQR 116
           GSVLNAISAGEEDIPLKHGQRCHSHLIKVGLNFDPIISGALLDMYAKRGSIQESQR
Sbjct: 61  GSVLNAISAGEEDIPLKHGQRCHSHLIKVGLNFDPIISGALLDMYAKRGSIQESQR 116

[Close]

BLAST of CsGy1G018740 vs. NCBI nr
Match: XP_008444010.1 (PREDICTED: pentatricopeptide repeat-containing protein At4g32430, mitochondrial [Cucumis melo] >KAA0046793.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 253 bits (646), Expect = 5.99e-77
Identity = 124/135 (91.85%), Postives = 129/135 (95.56%), Query Frame = 0


Query: 1   MYAKFEFMQDASRVFIELPYREIISWNALISGYAQNALCQEALEAFLYAVMEYKPNEYTF 60
           MYAKFEFMQDASRVF+ELPYREIISWNALISGYAQNALCQEALEAF YA+MEYKPNEYTF
Sbjct: 418 MYAKFEFMQDASRVFMELPYREIISWNALISGYAQNALCQEALEAFFYAIMEYKPNEYTF 477

Query: 61  GSVLNAISAGEEDIPLKHGQRCHSHLIKVGLNFDPIISGALLDMYAKRGSIQESQRVFNK 120
           GSVLNAISAGE DI LKHGQRCHSHLIKVGLNFDPIISGALLDMYAKRGSIQESQRVFN+
Sbjct: 478 GSVLNAISAGE-DISLKHGQRCHSHLIKVGLNFDPIISGALLDMYAKRGSIQESQRVFNE 537

Query: 121 TSKQSQLAWTTMVKG 135
           TSKQSQ AWT ++ G
Sbjct: 538 TSKQSQFAWTALISG 551

[Close]

BLAST of CsGy1G018740 vs. NCBI nr
Match: TYK26926.1 (pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 253 bits (646), Expect = 5.99e-77
Identity = 124/135 (91.85%), Postives = 129/135 (95.56%), Query Frame = 0


Query: 1   MYAKFEFMQDASRVFIELPYREIISWNALISGYAQNALCQEALEAFLYAVMEYKPNEYTF 60
           MYAKFEFMQDASRVF+ELPYREIISWNALISGYAQNALCQEALEAF YA+MEYKPNEYTF
Sbjct: 418 MYAKFEFMQDASRVFMELPYREIISWNALISGYAQNALCQEALEAFFYAIMEYKPNEYTF 477

Query: 61  GSVLNAISAGEEDIPLKHGQRCHSHLIKVGLNFDPIISGALLDMYAKRGSIQESQRVFNK 120
           GSVLNAISAGE DI LKHGQRCHSHLIKVGLNFDPIISGALLDMYAKRGSIQESQRVFN+
Sbjct: 478 GSVLNAISAGE-DISLKHGQRCHSHLIKVGLNFDPIISGALLDMYAKRGSIQESQRVFNE 537

Query: 121 TSKQSQLAWTTMVKG 135
           TSKQSQ AWT ++ G
Sbjct: 538 TSKQSQFAWTALISG 551

[Close]

BLAST of CsGy1G018740 vs. NCBI nr
Match: XP_004150024.3 (pentatricopeptide repeat-containing protein At4g32430, mitochondrial [Cucumis sativus])

HSP 1 Score: 252 bits (643), Expect = 1.51e-76
Identity = 124/135 (91.85%), Postives = 129/135 (95.56%), Query Frame = 0


Query: 1   MYAKFEFMQDASRVFIELPYREIISWNALISGYAQNALCQEALEAFLYAVMEYKPNEYTF 60
           MYAKFEFMQDASRVFIELPYREIISWNALISGYAQNALCQEALEAFLYA+MEYKPNEYTF
Sbjct: 413 MYAKFEFMQDASRVFIELPYREIISWNALISGYAQNALCQEALEAFLYAIMEYKPNEYTF 472

Query: 61  GSVLNAISAGEEDIPLKHGQRCHSHLIKVGLNFDPIISGALLDMYAKRGSIQESQRVFNK 120
           GSVLNAISAGE DI LKHGQRCHSHLIKVGLN DPIISGALLDMYAKRGSIQESQRVFN+
Sbjct: 473 GSVLNAISAGE-DISLKHGQRCHSHLIKVGLNVDPIISGALLDMYAKRGSIQESQRVFNE 532

Query: 121 TSKQSQLAWTTMVKG 135
           TSK+SQ AWT ++ G
Sbjct: 533 TSKESQFAWTALISG 546

[Close]

BLAST of CsGy1G018740 vs. NCBI nr
Match: XP_038878735.1 (pentatricopeptide repeat-containing protein At4g32430, mitochondrial isoform X1 [Benincasa hispida])

HSP 1 Score: 236 bits (603), Expect = 1.07e-70
Identity = 117/135 (86.67%), Postives = 124/135 (91.85%), Query Frame = 0


Query: 1   MYAKFEFMQDASRVFIELPYREIISWNALISGYAQNALCQEALEAFLYAVMEYKPNEYTF 60
           MYAKFE MQDASRVF+ELPYREIISWNALISGYAQN LCQEALE FL A+ME KPNEYTF
Sbjct: 418 MYAKFESMQDASRVFMELPYREIISWNALISGYAQNTLCQEALETFLCAIMESKPNEYTF 477

Query: 61  GSVLNAISAGEEDIPLKHGQRCHSHLIKVGLNFDPIISGALLDMYAKRGSIQESQRVFNK 120
           GSVLNAISAGE  I +KHGQRCHSHLIKVGLNFDPIISGALLDMYAKRGSIQESQRVFN+
Sbjct: 478 GSVLNAISAGE-GISIKHGQRCHSHLIKVGLNFDPIISGALLDMYAKRGSIQESQRVFNE 537

Query: 121 TSKQSQLAWTTMVKG 135
           TSK+SQ AWT ++ G
Sbjct: 538 TSKRSQFAWTALISG 551

[Close]

BLAST of CsGy1G018740 vs. ExPASy TrEMBL
Match: A0A5A7TTA5 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold216G00830 PE=4 SV=1)

HSP 1 Score: 253 bits (646), Expect = 2.90e-77
Identity = 124/135 (91.85%), Postives = 129/135 (95.56%), Query Frame = 0


Query: 1   MYAKFEFMQDASRVFIELPYREIISWNALISGYAQNALCQEALEAFLYAVMEYKPNEYTF 60
           MYAKFEFMQDASRVF+ELPYREIISWNALISGYAQNALCQEALEAF YA+MEYKPNEYTF
Sbjct: 418 MYAKFEFMQDASRVFMELPYREIISWNALISGYAQNALCQEALEAFFYAIMEYKPNEYTF 477

Query: 61  GSVLNAISAGEEDIPLKHGQRCHSHLIKVGLNFDPIISGALLDMYAKRGSIQESQRVFNK 120
           GSVLNAISAGE DI LKHGQRCHSHLIKVGLNFDPIISGALLDMYAKRGSIQESQRVFN+
Sbjct: 478 GSVLNAISAGE-DISLKHGQRCHSHLIKVGLNFDPIISGALLDMYAKRGSIQESQRVFNE 537

Query: 121 TSKQSQLAWTTMVKG 135
           TSKQSQ AWT ++ G
Sbjct: 538 TSKQSQFAWTALISG 551

[Close]

BLAST of CsGy1G018740 vs. ExPASy TrEMBL
Match: A0A5D3DTC6 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold876G00080 PE=4 SV=1)

HSP 1 Score: 253 bits (646), Expect = 2.90e-77
Identity = 124/135 (91.85%), Postives = 129/135 (95.56%), Query Frame = 0


Query: 1   MYAKFEFMQDASRVFIELPYREIISWNALISGYAQNALCQEALEAFLYAVMEYKPNEYTF 60
           MYAKFEFMQDASRVF+ELPYREIISWNALISGYAQNALCQEALEAF YA+MEYKPNEYTF
Sbjct: 418 MYAKFEFMQDASRVFMELPYREIISWNALISGYAQNALCQEALEAFFYAIMEYKPNEYTF 477

Query: 61  GSVLNAISAGEEDIPLKHGQRCHSHLIKVGLNFDPIISGALLDMYAKRGSIQESQRVFNK 120
           GSVLNAISAGE DI LKHGQRCHSHLIKVGLNFDPIISGALLDMYAKRGSIQESQRVFN+
Sbjct: 478 GSVLNAISAGE-DISLKHGQRCHSHLIKVGLNFDPIISGALLDMYAKRGSIQESQRVFNE 537

Query: 121 TSKQSQLAWTTMVKG 135
           TSKQSQ AWT ++ G
Sbjct: 538 TSKQSQFAWTALISG 551

[Close]

BLAST of CsGy1G018740 vs. ExPASy TrEMBL
Match: A0A1S3BA52 (pentatricopeptide repeat-containing protein At4g32430, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103487459 PE=4 SV=1)

HSP 1 Score: 253 bits (646), Expect = 2.90e-77
Identity = 124/135 (91.85%), Postives = 129/135 (95.56%), Query Frame = 0


Query: 1   MYAKFEFMQDASRVFIELPYREIISWNALISGYAQNALCQEALEAFLYAVMEYKPNEYTF 60
           MYAKFEFMQDASRVF+ELPYREIISWNALISGYAQNALCQEALEAF YA+MEYKPNEYTF
Sbjct: 418 MYAKFEFMQDASRVFMELPYREIISWNALISGYAQNALCQEALEAFFYAIMEYKPNEYTF 477

Query: 61  GSVLNAISAGEEDIPLKHGQRCHSHLIKVGLNFDPIISGALLDMYAKRGSIQESQRVFNK 120
           GSVLNAISAGE DI LKHGQRCHSHLIKVGLNFDPIISGALLDMYAKRGSIQESQRVFN+
Sbjct: 478 GSVLNAISAGE-DISLKHGQRCHSHLIKVGLNFDPIISGALLDMYAKRGSIQESQRVFNE 537

Query: 121 TSKQSQLAWTTMVKG 135
           TSKQSQ AWT ++ G
Sbjct: 538 TSKQSQFAWTALISG 551

[Close]

BLAST of CsGy1G018740 vs. ExPASy TrEMBL
Match: A0A0A0LWF3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G320370 PE=4 SV=1)

HSP 1 Score: 252 bits (643), Expect = 3.64e-77
Identity = 124/135 (91.85%), Postives = 129/135 (95.56%), Query Frame = 0


Query: 1   MYAKFEFMQDASRVFIELPYREIISWNALISGYAQNALCQEALEAFLYAVMEYKPNEYTF 60
           MYAKFEFMQDASRVFIELPYREIISWNALISGYAQNALCQEALEAFLYA+MEYKPNEYTF
Sbjct: 372 MYAKFEFMQDASRVFIELPYREIISWNALISGYAQNALCQEALEAFLYAIMEYKPNEYTF 431

Query: 61  GSVLNAISAGEEDIPLKHGQRCHSHLIKVGLNFDPIISGALLDMYAKRGSIQESQRVFNK 120
           GSVLNAISAGE DI LKHGQRCHSHLIKVGLN DPIISGALLDMYAKRGSIQESQRVFN+
Sbjct: 432 GSVLNAISAGE-DISLKHGQRCHSHLIKVGLNVDPIISGALLDMYAKRGSIQESQRVFNE 491

Query: 121 TSKQSQLAWTTMVKG 135
           TSK+SQ AWT ++ G
Sbjct: 492 TSKESQFAWTALISG 505

[Close]

BLAST of CsGy1G018740 vs. ExPASy TrEMBL
Match: A0A6J1CUB6 (pentatricopeptide repeat-containing protein At4g32430, mitochondrial isoform X2 OS=Momordica charantia OX=3673 GN=LOC111014418 PE=4 SV=1)

HSP 1 Score: 232 bits (592), Expect = 1.90e-70
Identity = 114/135 (84.44%), Postives = 123/135 (91.11%), Query Frame = 0


Query: 1   MYAKFEFMQDASRVFIELPYREIISWNALISGYAQNALCQEALEAFLYAVMEYKPNEYTF 60
           MYAKFE MQD+SRVFIELPYREIISWNALISGYAQN LCQEALE FL A+ME KPNEYTF
Sbjct: 288 MYAKFEMMQDSSRVFIELPYREIISWNALISGYAQNTLCQEALETFLCAIMESKPNEYTF 347

Query: 61  GSVLNAISAGEEDIPLKHGQRCHSHLIKVGLNFDPIISGALLDMYAKRGSIQESQRVFNK 120
           GSVLNAISAG+ DI +KHGQRCHSHLIK+GL  DPIISGALLDMYAKRGSIQESQRVFN+
Sbjct: 348 GSVLNAISAGQ-DISIKHGQRCHSHLIKLGLKSDPIISGALLDMYAKRGSIQESQRVFNE 407

Query: 121 TSKQSQLAWTTMVKG 135
           TSK+SQ AWT ++ G
Sbjct: 408 TSKRSQFAWTALISG 421

[Close]

BLAST of CsGy1G018740 vs. TAIR 10
Match: AT4G32430.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 172.6 bits (436), Expect = 2.3e-43
Identity = 80/133 (60.15%), Postives = 106/133 (79.70%), Query Frame = 0


Query: 1   MYAKFEFMQDASRVFIELPYREIISWNALISGYAQNALCQEALEAFLYAVMEYKPNEYTF 60
           +YAKFE ++DA + F ++ +REIISWNA+ISG+AQN    EAL+ FL A  E  PNEYTF
Sbjct: 416 LYAKFEALEDAKKAFEDITFREIISWNAMISGFAQNGFSHEALKMFLSAAAETMPNEYTF 475

Query: 61  GSVLNAISAGEEDIPLKHGQRCHSHLIKVGLNFDPIISGALLDMYAKRGSIQESQRVFNK 120
           GSVLNAI A  EDI +K GQRCH+HL+K+GLN  P++S ALLDMYAKRG+I ES++VFN+
Sbjct: 476 GSVLNAI-AFAEDISVKQGQRCHAHLLKLGLNSCPVVSSALLDMYAKRGNIDESEKVFNE 535

Query: 121 TSKQSQLAWTTMV 134
            S+++Q  WT+++
Sbjct: 536 MSQKNQFVWTSII 547

[Close]

BLAST of CsGy1G018740 vs. TAIR 10
Match: AT5G27110.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 94.0 bits (232), Expect = 1.0e-19
Identity = 49/135 (36.30%), Postives = 79/135 (58.52%), Query Frame = 0


Query: 1   MYAKFEFMQDASRVFIELPYREIISWNALISGYAQNALCQEALEAFLYAVMEYKPNEYTF 60
           MYAKF   +++ +VF E+P R++ SWN +IS + Q+   ++ALE  L+  ME    E   
Sbjct: 151 MYAKFNLFENSLQVFDEMPERDVASWNTVISCFYQSGEAEKALE--LFGRMESSGFEPNS 210

Query: 61  GSVLNAISAGEEDIPLKHGQRCHSHLIKVGLNFDPIISGALLDMYAKRGSIQESQRVFNK 120
            S+  AISA    + L+ G+  H   +K G   D  ++ AL+DMY K   ++ ++ VF K
Sbjct: 211 VSLTVAISACSRLLWLERGKEIHRKCVKKGFELDEYVNSALVDMYGKCDCLEVAREVFQK 270

Query: 121 TSKQSQLAWTTMVKG 136
             ++S +AW +M+KG
Sbjct: 271 MPRKSLVAWNSMIKG 283

[Close]

BLAST of CsGy1G018740 vs. TAIR 10
Match: AT2G27610.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 91.3 bits (225), Expect = 6.7e-19
Identity = 44/135 (32.59%), Postives = 82/135 (60.74%), Query Frame = 0


Query: 2   YAKFEFMQDASRVFIELPYREIISWNALISGYAQNALCQEALEAFLYAVM-EYKPNEYTF 61
           Y K   +++A++VF  +  ++I++W+A+++GYAQ    + A++ F        KPNE+TF
Sbjct: 438 YVKLGKVEEAAKVFSGIDDKDIVAWSAMLAGYAQTGETEAAIKMFGELTKGGIKPNEFTF 497

Query: 62  GSVLNAISAGEEDIPLKHGQRCHSHLIKVGLNFDPIISGALLDMYAKRGSIQESQRVFNK 121
            S+LN  +A   +  +  G++ H   IK  L+    +S ALL MYAK+G+I+ ++ VF +
Sbjct: 498 SSILNVCAA--TNASMGQGKQFHGFAIKSRLDSSLCVSSALLTMYAKKGNIESAEEVFKR 557

Query: 122 TSKQSQLAWTTMVKG 136
             ++  ++W +M+ G
Sbjct: 558 QREKDLVSWNSMISG 570

[Close]

BLAST of CsGy1G018740 vs. TAIR 10
Match: AT4G37170.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 91.3 bits (225), Expect = 6.7e-19
Identity = 48/163 (29.45%), Postives = 86/163 (52.76%), Query Frame = 0


Query: 1   MYAKFEFMQDASRVFIELPYREIISWNALISGYAQNALCQEALEAF-------------- 60
           MYAK   + DA +VF E+P R++ SWN +++GYA+  L +EA + F              
Sbjct: 129 MYAKCGSLVDARKVFDEMPNRDLCSWNVMVNGYAEVGLLEEARKLFDEMTEKDSYSWTAM 188

Query: 61  ---------------LYAVMEYKPNEY-TFGSVLNAISAGEEDIPLKHGQRCHSHLIKVG 120
                          LY++M+  PN      +V  A++A      ++ G+  H H+++ G
Sbjct: 189 VTGYVKKDQPEEALVLYSLMQRVPNSRPNIFTVSIAVAAAAAVKCIRRGKEIHGHIVRAG 248

Query: 121 LNFDPIISGALLDMYAKRGSIQESQRVFNKTSKQSQLAWTTMV 134
           L+ D ++  +L+DMY K G I E++ +F+K  ++  ++WT+M+
Sbjct: 249 LDSDEVLWSSLMDMYGKCGCIDEARNIFDKIVEKDVVSWTSMI 291

[Close]

BLAST of CsGy1G018740 vs. TAIR 10
Match: AT5G13230.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 91.3 bits (225), Expect = 6.7e-19
Identity = 42/136 (30.88%), Postives = 81/136 (59.56%), Query Frame = 0


Query: 1   MYAKFEFMQDASRVFIELPYREIISWNALISGYAQNALCQEALEAFLYAVMEY-KPNEYT 60
           +Y +   M DA +VF E+P  +++ W+ +I+ + QN  C EA++ F+     +  PNE+T
Sbjct: 291 LYTQLGDMSDAFKVFNEMPKNDVVPWSFMIARFCQNGFCNEAVDLFIRMREAFVVPNEFT 350

Query: 61  FGSVLNAISAGEEDIPLKHGQRCHSHLIKVGLNFDPIISGALLDMYAKRGSIQESQRVFN 120
             S+LN  + G+       G++ H  ++KVG + D  +S AL+D+YAK   +  + ++F 
Sbjct: 351 LSSILNGCAIGKCS---GLGEQLHGLVVKVGFDLDIYVSNALIDVYAKCEKMDTAVKLFA 410

Query: 121 KTSKQSQLAWTTMVKG 136
           + S +++++W T++ G
Sbjct: 411 ELSSKNEVSWNTVIVG 423

The following BLAST results are available for this feature:

BLAST of CsGy1G018740 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q84MA3	3.2e-42	60.15	Pentatricopeptide repeat-containing protein At4g32430, mitochondrial OS=Arabidop...	[more]
O04659	1.5e-18	36.30	Pentatricopeptide repeat-containing protein At5g27110 OS=Arabidopsis thaliana OX...	[more]
Q9ZUW3	9.4e-18	32.59	Pentatricopeptide repeat-containing protein At2g27610 OS=Arabidopsis thaliana OX...	[more]
O23169	9.4e-18	29.45	Pentatricopeptide repeat-containing protein At4g37170 OS=Arabidopsis thaliana OX...	[more]
Q9LYV3	9.4e-18	30.88	Putative pentatricopeptide repeat-containing protein At5g13230, mitochondrial OS...	[more]

BLAST of CsGy1G018740 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8653088.1	1.66e-77	100.00	hypothetical protein Csa_020070 [Cucumis sativus]	[more]
XP_008444010.1	5.99e-77	91.85	PREDICTED: pentatricopeptide repeat-containing protein At4g32430, mitochondrial ...	[more]
TYK26926.1	5.99e-77	91.85	pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa]	[more]
XP_004150024.3	1.51e-76	91.85	pentatricopeptide repeat-containing protein At4g32430, mitochondrial [Cucumis sa...	[more]
XP_038878735.1	1.07e-70	86.67	pentatricopeptide repeat-containing protein At4g32430, mitochondrial isoform X1 ...	[more]

BLAST of CsGy1G018740 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TTA5	2.90e-77	91.85	Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A5D3DTC6	2.90e-77	91.85	Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A1S3BA52	2.90e-77	91.85	pentatricopeptide repeat-containing protein At4g32430, mitochondrial OS=Cucumis ...	[more]
A0A0A0LWF3	3.64e-77	91.85	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G320370 PE=4 SV=1	[more]
A0A6J1CUB6	1.90e-70	84.44	pentatricopeptide repeat-containing protein At4g32430, mitochondrial isoform X2 ...	[more]

BLAST of CsGy1G018740 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G32430.1	2.3e-43	60.15	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT5G27110.1	1.0e-19	36.30	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT2G27610.1	6.7e-19	32.59	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT4G37170.1	6.7e-19	29.45	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT5G13230.1	6.7e-19	30.88	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 1..136 e-value: 5.3E-13 score: 51.1
IPR002885	Pentatricopeptide repeat	PFAM	PF01535	PPR	coord: 24..46 e-value: 2.8E-4 score: 20.9
None	No IPR available	PANTHER	PTHR47928	REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED	coord: 22..136
None	No IPR available	PANTHER	PTHR47928	REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED	coord: 1..67
None	No IPR available	PANTHER	PTHR47928:SF105	PENTATRICOPEPTIDE (PPR) REPEAT PROTEIN	coord: 1..67 coord: 22..136

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy1G018740.2	CsGy1G018740.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009451	RNA modification
cellular_component	GO:0043231	intracellular membrane-bounded organelle
molecular_function	GO:0005515	protein binding
molecular_function	GO:0003723	RNA binding