CsGy1G017480 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy1G017480
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	Unknown protein
Location	Gy14Chr1: 15700979 .. 15701281 (-)
RNA-Seq Expression	CsGy1G017480
Synteny	CsGy1G017480

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGAAGATGGGAGGAGTTGGATCACGTGTGTTTGATGGAAGCTTATCATTGCAAAGCTTTTTGATTGAACGAAGGCCTTACCATCGCAATTGTGGCTGTGCATTACACGATGATCGGATTAGAAACGGAGCTGCTTGCTCTCATGCTTTGAAATCCAAAAACTCTGTTTCGTTTCTCAAAACCCAAAAATGCCCAAAAACTTCTCTCCAAATTCTTCCTTCCTCTTCTCGTCAATTTGTTAACTCCGAATCTCCTCCTCCTCCTCTTCACTTTGTTTACCAATTTTCAACATCTTCATAG

mRNA sequence

ATGGAGAAGATGGGAGGAGTTGGATCACGTGTGTTTGATGGAAGCTTATCATTGCAAAGCTTTTTGATTGAACGAAGGCCTTACCATCGCAATTGTGGCTGTGCATTACACGATGATCGGATTAGAAACGGAGCTGCTTGCTCTCATGCTTTGAAATCCAAAAACTCTGTTTCGTTTCTCAAAACCCAAAAATGCCCAAAAACTTCTCTCCAAATTCTTCCTTCCTCTTCTCGTCAATTTGTTAACTCCGAATCTCCTCCTCCTCCTCTTCACTTTGTTTACCAATTTTCAACATCTTCATAG

Coding sequence (CDS)

ATGGAGAAGATGGGAGGAGTTGGATCACGTGTGTTTGATGGAAGCTTATCATTGCAAAGCTTTTTGATTGAACGAAGGCCTTACCATCGCAATTGTGGCTGTGCATTACACGATGATCGGATTAGAAACGGAGCTGCTTGCTCTCATGCTTTGAAATCCAAAAACTCTGTTTCGTTTCTCAAAACCCAAAAATGCCCAAAAACTTCTCTCCAAATTCTTCCTTCCTCTTCTCGTCAATTTGTTAACTCCGAATCTCCTCCTCCTCCTCTTCACTTTGTTTACCAATTTTCAACATCTTCATAG

Protein sequence

MEKMGGVGSRVFDGSLSLQSFLIERRPYHRNCGCALHDDRIRNGAACSHALKSKNSVSFLKTQKCPKTSLQILPSSSRQFVNSESPPPPLHFVYQFSTSS*

Homology

[Close]

BLAST of CsGy1G017480 vs. NCBI nr
Match: KGN65216.1 (hypothetical protein Csa_019753 [Cucumis sativus])

HSP 1 Score: 206 bits (524), Expect = 5.42e-67
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0


Query: 1   MEKMGGVGSRVFDGSLSLQSFLIERRPYHRNCGCALHDDRIRNGAACSHALKSKNSVSFL 60
           MEKMGGVGSRVFDGSLSLQSFLIERRPYHRNCGCALHDDRIRNGAACSHALKSKNSVSFL
Sbjct: 1   MEKMGGVGSRVFDGSLSLQSFLIERRPYHRNCGCALHDDRIRNGAACSHALKSKNSVSFL 60

Query: 61  KTQKCPKTSLQILPSSSRQFVNSESPPPPLHFVYQFSTSS 100
           KTQKCPKTSLQILPSSSRQFVNSESPPPPLHFVYQFSTSS
Sbjct: 61  KTQKCPKTSLQILPSSSRQFVNSESPPPPLHFVYQFSTSS 100

[Close]

BLAST of CsGy1G017480 vs. NCBI nr
Match: KAA0050036.1 (hypothetical protein E6C27_scaffold675G00110 [Cucumis melo var. makuwa] >TYK03640.1 hypothetical protein E5676_scaffold1369G00690 [Cucumis melo var. makuwa])

HSP 1 Score: 158 bits (399), Expect = 3.86e-47
Identity = 86/105 (81.90%), Postives = 88/105 (83.81%), Query Frame = 0


Query: 1   MEKMGGV-GSRVFDGSLSLQSFLIERRPYHRNCGCALHDDRIRNGAACSHALKSKNSVSF 60
           MEKMGGV GS VFDGSLS+Q FLIERRPYHRNCGCALHDDR RNGAACSHA+K KNSVSF
Sbjct: 58  MEKMGGVVGSCVFDGSLSMQDFLIERRPYHRNCGCALHDDRFRNGAACSHAMKLKNSVSF 117

Query: 61  LKTQKCPKTSLQILPSSS----RQFVNSESPPPPLHFVYQFSTSS 100
           LKTQKCP TSLQIL SSS    RQFVNSESP     FV QFSTSS
Sbjct: 118 LKTQKCPITSLQILRSSSKVSSRQFVNSESP----SFVSQFSTSS 158

[Close]

BLAST of CsGy1G017480 vs. NCBI nr
Match: KAG6587851.1 (hypothetical protein SDJN03_16416, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 78.2 bits (191), Expect = 2.98e-16
Identity = 43/67 (64.18%), Postives = 50/67 (74.63%), Query Frame = 0


Query: 4  MGG--VGSRVFDGSLSLQSFLIERRPYHRNCGCALHDDRIRNGAACSHALKSKNSVSFLK 63
          MGG  +G  VFDGS+S++ FLIERRPYHRNCGCALH  R++NG  C HAL S  SVSFLK
Sbjct: 1  MGGEMMGGCVFDGSISMRDFLIERRPYHRNCGCALHH-RLKNGG-CPHALNS--SVSFLK 60

Query: 64 TQKCPKT 68
           +K   T
Sbjct: 61 ARKWTDT 63

[Close]

BLAST of CsGy1G017480 vs. NCBI nr
Match: XP_023531633.1 (uncharacterized protein LOC111793815 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 75.5 bits (184), Expect = 2.85e-15
Identity = 42/67 (62.69%), Postives = 48/67 (71.64%), Query Frame = 0


Query: 4  MGG--VGSRVFDGSLSLQSFLIERRPYHRNCGCALHDDRIRNGAACSHALKSKNSVSFLK 63
          MGG  +G  VFDGS+S+  FLIERRPYHRNCGCALH  R +NG  C HAL +  SVSFLK
Sbjct: 1  MGGEVMGGCVFDGSISMHDFLIERRPYHRNCGCALHH-RAKNGG-CPHALNT--SVSFLK 60

Query: 64 TQKCPKT 68
           +K   T
Sbjct: 61 ARKWTDT 63

[Close]

BLAST of CsGy1G017480 vs. NCBI nr
Match: XP_023531631.1 (uncharacterized protein LOC111793815 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 75.5 bits (184), Expect = 5.16e-15
Identity = 42/67 (62.69%), Postives = 48/67 (71.64%), Query Frame = 0


Query: 4  MGG--VGSRVFDGSLSLQSFLIERRPYHRNCGCALHDDRIRNGAACSHALKSKNSVSFLK 63
          MGG  +G  VFDGS+S+  FLIERRPYHRNCGCALH  R +NG  C HAL +  SVSFLK
Sbjct: 1  MGGEVMGGCVFDGSISMHDFLIERRPYHRNCGCALHH-RAKNGG-CPHALNT--SVSFLK 60

Query: 64 TQKCPKT 68
           +K   T
Sbjct: 61 ARKWTDT 63

[Close]

BLAST of CsGy1G017480 vs. ExPASy TrEMBL
Match: A0A0A0LZ02 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G265640 PE=4 SV=1)

HSP 1 Score: 206 bits (524), Expect = 2.62e-67
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0


Query: 1   MEKMGGVGSRVFDGSLSLQSFLIERRPYHRNCGCALHDDRIRNGAACSHALKSKNSVSFL 60
           MEKMGGVGSRVFDGSLSLQSFLIERRPYHRNCGCALHDDRIRNGAACSHALKSKNSVSFL
Sbjct: 1   MEKMGGVGSRVFDGSLSLQSFLIERRPYHRNCGCALHDDRIRNGAACSHALKSKNSVSFL 60

Query: 61  KTQKCPKTSLQILPSSSRQFVNSESPPPPLHFVYQFSTSS 100
           KTQKCPKTSLQILPSSSRQFVNSESPPPPLHFVYQFSTSS
Sbjct: 61  KTQKCPKTSLQILPSSSRQFVNSESPPPPLHFVYQFSTSS 100

[Close]

BLAST of CsGy1G017480 vs. ExPASy TrEMBL
Match: A0A5A7U781 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1369G00690 PE=4 SV=1)

HSP 1 Score: 158 bits (399), Expect = 1.87e-47
Identity = 86/105 (81.90%), Postives = 88/105 (83.81%), Query Frame = 0


Query: 1   MEKMGGV-GSRVFDGSLSLQSFLIERRPYHRNCGCALHDDRIRNGAACSHALKSKNSVSF 60
           MEKMGGV GS VFDGSLS+Q FLIERRPYHRNCGCALHDDR RNGAACSHA+K KNSVSF
Sbjct: 58  MEKMGGVVGSCVFDGSLSMQDFLIERRPYHRNCGCALHDDRFRNGAACSHAMKLKNSVSF 117

Query: 61  LKTQKCPKTSLQILPSSS----RQFVNSESPPPPLHFVYQFSTSS 100
           LKTQKCP TSLQIL SSS    RQFVNSESP     FV QFSTSS
Sbjct: 118 LKTQKCPITSLQILRSSSKVSSRQFVNSESP----SFVSQFSTSS 158

[Close]

BLAST of CsGy1G017480 vs. ExPASy TrEMBL
Match: A0A2P6RIH6 (Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr2g0086601 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 1.72e-10
Identity = 36/83 (43.37%), Postives = 49/83 (59.04%), Query Frame = 0


Query: 5  GGVGSRVFDGSLSLQSFLIERRPYHRNCGCALHDDRIRNGAACSHALKSKNSVSFLKTQK 64
          G +  RVF+GSLS+Q   IERRPYH+NC CALH  +     ACS A   + ++SF K Q 
Sbjct: 8  GMMFQRVFEGSLSMQDTEIERRPYHKNCNCALHKSK---RGACSDACPQQRNISFPKKQS 67

Query: 65 CPKTSLQILPSSSRQFVNSESPP 87
              SL +  ++S+    S +PP
Sbjct: 68 WTDGSLCMSATTSK----SSTPP 83

[Close]

BLAST of CsGy1G017480 vs. ExPASy TrEMBL
Match: M5VV20 (Uncharacterized protein (Fragment) OS=Prunus persica OX=3760 GN=PRUPE_ppa020822mg PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 2.71e-10
Identity = 27/51 (52.94%), Postives = 35/51 (68.63%), Query Frame = 0


Query: 11 VFDGSLSLQSFLIERRPYHRNCGCALHDDRIRNGAACSHALKSKNSVSFLK 61
          VF+GSLS+Q   +ERRPYH+NC CALH  +   G  CS+A   K ++SF K
Sbjct: 14 VFEGSLSMQDMEVERRPYHKNCSCALHKSK---GGVCSNACPQKRNISFPK 61

[Close]

BLAST of CsGy1G017480 vs. ExPASy TrEMBL
Match: A0A2N9FW29 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS19310 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 3.72e-10
Identity = 31/67 (46.27%), Postives = 42/67 (62.69%), Query Frame = 0


Query: 11 VFDGSLSLQSFLIERRPYHRNCGCALHDDRIRNGAACSHALKSKNSVSFLKTQKCPKTSL 70
          VF+GS+S+    I+RRPYHRNC CALH+ +  + A+CSH    + ++S  K Q   K SL
Sbjct: 13 VFEGSISMHDMEIKRRPYHRNCSCALHNLKDGSSASCSH----QRNISLPKKQSWAKCSL 72

Query: 71 QILPSSS 77
           I  S S
Sbjct: 73 SITASKS 75

[Close]

BLAST of CsGy1G017480 vs. TAIR 10
Match: AT5G35110.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G46490.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 50.4 bits (119), Expect = 9.5e-07
Identity = 23/61 (37.70%), Postives = 35/61 (57.38%), Query Frame = 0


Query: 4  MGGVGSRVFDGSLSLQSFLIERRPYHRNCGCALHDDRIRNGAACSHALKSKNSVSFLKTQ 63
          M G+   +F+G +S     I+RRPYH+NCGCALH +R R G + +     ++ V     Q
Sbjct: 6  MDGIFRNIFEGCISSCDSSIQRRPYHKNCGCALH-ERSRGGGSATPCRHGRSEVVMFPIQ 65

Query: 64 K 65
          +
Sbjct: 66 R 65

[Close]

BLAST of CsGy1G017480 vs. TAIR 10
Match: AT2G46490.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G35110.1); Has 34 Blast hits to 34 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 33; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 48.5 bits (114), Expect = 3.6e-06
Identity = 19/33 (57.58%), Postives = 24/33 (72.73%), Query Frame = 0


Query: 6  GVGSRVFDGSLSLQSFLIERRPYHRNCGCALHD 39
          G+   +F+G +S     IERRPYH+NCGCALHD
Sbjct: 5  GIFRSIFEGCISGLDSAIERRPYHKNCGCALHD 37

The following BLAST results are available for this feature:

BLAST of CsGy1G017480 vs.


Match Name	E-value	Identity	Description

BLAST of CsGy1G017480 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN65216.1	5.42e-67	100.00	hypothetical protein Csa_019753 [Cucumis sativus]	[more]
KAA0050036.1	3.86e-47	81.90	hypothetical protein E6C27_scaffold675G00110 [Cucumis melo var. makuwa] >TYK0364...	[more]
KAG6587851.1	2.98e-16	64.18	hypothetical protein SDJN03_16416, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_023531633.1	2.85e-15	62.69	uncharacterized protein LOC111793815 isoform X2 [Cucurbita pepo subsp. pepo]	[more]
XP_023531631.1	5.16e-15	62.69	uncharacterized protein LOC111793815 isoform X1 [Cucurbita pepo subsp. pepo]	[more]

BLAST of CsGy1G017480 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LZ02	2.62e-67	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G265640 PE=4 SV=1	[more]
A0A5A7U781	1.87e-47	81.90	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A2P6RIH6	1.72e-10	43.37	Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr2g0086601 PE=4...	[more]
M5VV20	2.71e-10	52.94	Uncharacterized protein (Fragment) OS=Prunus persica OX=3760 GN=PRUPE_ppa020822m...	[more]
A0A2N9FW29	3.72e-10	46.27	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS19310 PE=4 SV=1	[more]

BLAST of CsGy1G017480 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G35110.1	9.5e-07	37.70	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT2G46490.1	3.6e-06	57.58	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35121	HOMEODOMAIN PROTEIN 8, PUTATIVE-RELATED	coord: 10..98
None	No IPR available	PANTHER	PTHR35121:SF8	SUBFAMILY NOT NAMED	coord: 10..98

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy1G017480.2	CsGy1G017480.2	mRNA