CsGy1G016820 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy1G016820
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	DNA-directed RNA polymerase subunit beta''
Location	Gy14Chr1: 14134298 .. 14137259 (-)
RNA-Seq Expression	CsGy1G016820
Synteny	CsGy1G016820

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGCCTAGAAAAGAGAATTGAGGGTTGGAACGAGCGTATAACAAGAATTCTTGGAATTCCTTGGGGATTTTTGATTGGTGCTGAACTAACGATAGTGCAAAGTCGTATCTCTTTGGTTAATAAGATCCAAAAGGTTTATCGATCCCAGGGGGTGGAGATCCATAATAGACATATCGAAATTATTGTACGTCAAATAACATCAAAAGTGTTGGTTTCAGAAGATGGAATGTCTAATGTTTTTTCACCTGGAGAACTCATTGGGTTGTTACGAGCGGAACGAACAGGGCGTGCTTTGGAAGAAGCGATCTGTTACCGAGCCGTATTATTGGGAATAACGAAAGCATCTCTAAATACTCAAAGTTTCATATCGGAAGCAAGTTTTCAAGAAACTGCTCGAGTTTTAGCAAAAGCCGCCCTCCGAGGTCGTATCGATTGGTTGAGAGGTTTGAAAGAGAACGTTGTTCTAGGAGGCATGATACCCGTTGGTACGGGATTCAGAGAATTAGCGCACCGTTCGAGGCAACATAACAATATTCCTTTAGAAATCCAAAAAAAAAAAAAAAGAAATCGAGGGGGAAATGAGAGATATTTTGTTCCATCACAAAGAATTATTTAATTTTTTCATTTCAACAAATTTACATGATACATCAAAACAAGAATTTCTAGGATTTAATGATTCATAAAAGGGGAATCATCATGTTAACTAGTCGTGTTGATCGTCGTCAACTCCATTTGTTAGAACAGCTTCCATTGAGTCTCTGCACCTACCCCTTTTTTTTTTTCGGAAAAAGGATTTGGCTCAGGATTGCCCATTTTTAATTCCAGGGTTTCTCTGAATTTGAAAGTTATCACTTAGTAGGTTTCCATACCAAGGCTCAATCTAATTAAGTCCGTAGCGTCTACCGATTTCGCCATATCCCCCTCTTTTAAGATTAGTATCGCACTATGATGTCCTTCCCCGTTTTCTTTCATTTGTATTATACTGGAACGAACCACTGAAGTCATTAGAATACCGATTCCTCTATTGAAAAGTGTTTCCTCCTATTGGATTGGATTTCTTGTCTATCTTCTTTAATCTCTCTCTATCGGAGACCCGTATTTGTTCCGATCCAAAATGATTCTATCATTTCTGTATCTGCAATTCAATATATATCAATATAGATAGATATATAGACATATAAATTTGCCCCTCTTTCTATTCTTTTTTTAGTAAAAAAATGAATACTTAAACGGTCGATTCTTTTCTTCGTCTTATCTTCCACCTTTCAGAATGAAAACATAGAAATGCTTCATTATCATCTCAATATCTTTGAATAATCCCCTTCCCCTTCTTTTTTTTAGAGTTTTTAGACTTAGAATAAGTTAGAAAGAATCAAAATAGATTCAACCTCAGTCAAACTCGAACCCGGCGCCGGGTTCAAATTGAATTAATAAAAGAGTGAGAACGAAAATGAAAATGTGATGGCTAGGGCAACAATATCATACAAAATACTTAAATGAAAAACTGTACTGCGATTCTAAATTTAGAAATCATTGTATTACTATATTTTAATATTTGATTGTAACGAAATCTTTCATAATTTTATTTCGAGTTACCAATTTTTCTTTTTTTTCTTCATTTTGGATCGGAAAATGGAAGAGTTGCGTGAATCAAAAATCCAAGGGAGGTTCATGGCCAAGGGTAAAGATGCCCGAGTAACAGTTATTTTGGAATGTACTCGTTGTGTTCGAAACGGTGTTAATAAGCAATCAATAGGGATTTCCAGAGCCAACATAAGCTTAGCTCAACTGACACCTGTATCTTTCTGTGGACAAGAGGTCCGGGTTCAAATCTCCACCAAAAATAAAAAGAAAAAAAAAGAAAAGGGATTTCCAGATATATTACTCAAAAGAATCGACACAATACGCTGTGTGTCACCTTTAATCCTATTTTGATCGGATCCGGCTCTACCCAAACTTTTCTGGTTTACCCCAACATGAATTATGAAGCAAAGAAATAGAATTGGACCATTGTGTATATTAGATTAATATGACACATATGTAATTGATATGATATCTATATATATATGAAATAATATTGTATTCATCTATATTCAATGTCATTCCACTCTATTTTATAGAGTACAATTTTACCTTAAATAATAATAATAGATAGTATGGTAGAGGTAAAGTTACATAGAATACTTCTCTCATAGATCGTATTCTAGTCGCAATTCTATAAGACAAATTTGATGCTTTTCATTTATCTCAATCATGATAAGAATAAAAAGGTTAATTCAAATAATCACTTGACTATGTTTTTAGATATTAACTAGTTATATAGGAACTAAAGATATATCTAATCCGCCCTACTACTGTGAATTTAGATAGGGCTTACAATGGAAGTCCTTCTCTTTCGGCTGTAATGTAATTTTGAATTCAATATTGAATGAATAGAGAGATTAAATCAAGAAAAACAATGAAGAATTCAAAGAATGCTTTAGCAAAAATCAAGAAATGGAAGAACAAAAGTCGTATGGATTCACAAAAAGGACGTGGATGGATAGGAACTAAAAAAGAGAGATTGAAGTAGTTTGAACGATTCAATAATATTATTACTTCAATTCGTAATTTTTAGTTGGATAAATCTTAGTGATGGAATAATAAGTTATAATTCATTGGTTCATTGTATCATTAACCATTTCTTTCTTTTATTTTAGTATGAGGAACTTATCATGAATCCACTGATTTCTGCCGCTTCCGTTATTGCTGCTGGGTTGGCCGTGGGGCTTGCTTCTATTGGACCTGGGATTGGTCAAGGTACTGCTGCGGGCCAAGCTGTAGAAGGGATCGCGAGACAACCCGAGGCGGAGGGAAAAATCCGAGGTACTTTATTGCTTAGTCTGGCTTTTATGGAAGCTTTAACAATTTATGGACTGGTTGTAGCATTAGCACTTTTATTTGCGAATCCTTTTGTTTAA

mRNA sequence

ATGAGCCTAGAAAAGAGAATTGAGGGTTGGAACGAGCGTATAACAAGAATTCTTGGAATTCCTTGGGGATTTTTGATTGGTGCTGAACTAACGATAGTGCAAAGTCGTATCTCTTTGGTTAATAAGATCCAAAAGGTTTATCGATCCCAGGGGGTGGAGATCCATAATAGACATATCGAAATTATTGTACGTCAAATAACATCAAAAGTGTTGGTTTCAGAAGATGGAATGTCTAATGTTTTTTCACCTGGAGAACTCATTGGGTTGTTACGAGCGGAACGAACAGGGCGTGCTTTGGAAGAAGCGATCTGTTACCGAGCCGTATTATTGGGAATAACGAAAGCATCTCTAAATACTCAAAGTTTCATATCGGAAGCAAGTTTTCAAGAAACTGCTCGAGTTTTAGCAAAAGCCGCCCTCCGAGGTCGTATCGATTGGTTGAGAGGTTTGAAAGAGAACGTTGTTCTAGGAGGCATGATACCCGTTGATAGGGCTTACAATGGAAGTCCTTCTCTTTCGGCTTATGAGGAACTTATCATGAATCCACTGATTTCTGCCGCTTCCGTTATTGCTGCTGGGTTGGCCGTGGGGCTTGCTTCTATTGGACCTGGGATTGGTCAAGGTACTGCTGCGGGCCAAGCTGTAGAAGGGATCGCGAGACAACCCGAGGCGGAGGGAAAAATCCGAGGTACTTTATTGCTTAGTCTGGCTTTTATGGAAGCTTTAACAATTTATGGACTGGTTGTAGCATTAGCACTTTTATTTGCGAATCCTTTTGTTTAA

Coding sequence (CDS)

ATGAGCCTAGAAAAGAGAATTGAGGGTTGGAACGAGCGTATAACAAGAATTCTTGGAATTCCTTGGGGATTTTTGATTGGTGCTGAACTAACGATAGTGCAAAGTCGTATCTCTTTGGTTAATAAGATCCAAAAGGTTTATCGATCCCAGGGGGTGGAGATCCATAATAGACATATCGAAATTATTGTACGTCAAATAACATCAAAAGTGTTGGTTTCAGAAGATGGAATGTCTAATGTTTTTTCACCTGGAGAACTCATTGGGTTGTTACGAGCGGAACGAACAGGGCGTGCTTTGGAAGAAGCGATCTGTTACCGAGCCGTATTATTGGGAATAACGAAAGCATCTCTAAATACTCAAAGTTTCATATCGGAAGCAAGTTTTCAAGAAACTGCTCGAGTTTTAGCAAAAGCCGCCCTCCGAGGTCGTATCGATTGGTTGAGAGGTTTGAAAGAGAACGTTGTTCTAGGAGGCATGATACCCGTTGATAGGGCTTACAATGGAAGTCCTTCTCTTTCGGCTTATGAGGAACTTATCATGAATCCACTGATTTCTGCCGCTTCCGTTATTGCTGCTGGGTTGGCCGTGGGGCTTGCTTCTATTGGACCTGGGATTGGTCAAGGTACTGCTGCGGGCCAAGCTGTAGAAGGGATCGCGAGACAACCCGAGGCGGAGGGAAAAATCCGAGGTACTTTATTGCTTAGTCTGGCTTTTATGGAAGCTTTAACAATTTATGGACTGGTTGTAGCATTAGCACTTTTATTTGCGAATCCTTTTGTTTAA

Protein sequence

MSLEKRIEGWNERITRILGIPWGFLIGAELTIVQSRISLVNKIQKVYRSQGVEIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAVLLGITKASLNTQSFISEASFQETARVLAKAALRGRIDWLRGLKENVVLGGMIPVDRAYNGSPSLSAYEELIMNPLISAASVIAAGLAVGLASIGPGIGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV*

Homology

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BLAST of CsGy1G016820 vs. ExPASy Swiss-Prot
Match: Q4VZP3 (DNA-directed RNA polymerase subunit beta'' OS=Cucumis sativus OX=3659 GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 314.7 bits (805), Expect = 9.9e-85
Identity = 162/166 (97.59%), Postives = 163/166 (98.19%), Query Frame = 0


Query: 1    MSLEKRIEGWNERITRILGIPWGFLIGAELTIVQSRISLVNKIQKVYRSQGVEIHNRHIE 60
            MSLEKRIEGWNERITRILGIPWGFLIGAELTIVQSRISLVNKIQKVYRSQGVEIHNRHIE
Sbjct: 1169 MSLEKRIEGWNERITRILGIPWGFLIGAELTIVQSRISLVNKIQKVYRSQGVEIHNRHIE 1228

Query: 61   IIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAVLLGITKASLNTQ 120
            IIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAVLLGITKASLNTQ
Sbjct: 1229 IIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAVLLGITKASLNTQ 1288

Query: 121  SFISEASFQETARVLAKAALRGRIDWLRGLKENVVLGGMIPVDRAY 167
            SFISEASFQETARVLAKAALRGRIDWLRGLKENVVLGGMIPV   +
Sbjct: 1289 SFISEASFQETARVLAKAALRGRIDWLRGLKENVVLGGMIPVGTGF 1334

[Close]

BLAST of CsGy1G016820 vs. ExPASy Swiss-Prot
Match: Q09FX1 (DNA-directed RNA polymerase subunit beta'' OS=Nandina domestica OX=41776 GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 310.1 bits (793), Expect = 2.4e-83
Identity = 156/168 (92.86%), Postives = 163/168 (97.02%), Query Frame = 0


Query: 1    MSLEKRIEGWNERITRILGIPWGFLIGAELTIVQSRISLVNKIQKVYRSQGVEIHNRHIE 60
            M+LEKR+EGWNERITRILGIPWGFLIGAELTI QSR+SLVNKIQKVYRSQGV+IHNRHIE
Sbjct: 1152 MNLEKRVEGWNERITRILGIPWGFLIGAELTIAQSRVSLVNKIQKVYRSQGVQIHNRHIE 1211

Query: 61   IIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAVLLGITKASLNTQ 120
            IIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAVLLGIT+ASLNTQ
Sbjct: 1212 IIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAVLLGITRASLNTQ 1271

Query: 121  SFISEASFQETARVLAKAALRGRIDWLRGLKENVVLGGMIPVDRAYNG 169
            SFISEASFQETARVLAKAALRGRIDWL+GLKENVVLGGMIPV   + G
Sbjct: 1272 SFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGMIPVGTGFKG 1319

[Close]

BLAST of CsGy1G016820 vs. ExPASy Swiss-Prot
Match: Q0G9M9 (DNA-directed RNA polymerase subunit beta'' OS=Liriodendron tulipifera OX=3415 GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 307.0 bits (785), Expect = 2.1e-82
Identity = 155/168 (92.26%), Postives = 161/168 (95.83%), Query Frame = 0


Query: 1    MSLEKRIEGWNERITRILGIPWGFLIGAELTIVQSRISLVNKIQKVYRSQGVEIHNRHIE 60
            M+LEKRIEGWNE ITRILGIPWGFLIGAELTI QSRISLVNKIQKVYRSQGV+IHNRHIE
Sbjct: 1157 MNLEKRIEGWNEHITRILGIPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIE 1216

Query: 61   IIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAVLLGITKASLNTQ 120
            IIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEE ICYRA+LLGIT+ASLNTQ
Sbjct: 1217 IIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEGICYRAILLGITRASLNTQ 1276

Query: 121  SFISEASFQETARVLAKAALRGRIDWLRGLKENVVLGGMIPVDRAYNG 169
            SFISEASFQETARVLAKAALRGRIDWL+GLKENVVLGGMIPV   + G
Sbjct: 1277 SFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGMIPVGTGFKG 1324

[Close]

BLAST of CsGy1G016820 vs. ExPASy Swiss-Prot
Match: Q7YJY0 (DNA-directed RNA polymerase subunit beta'' OS=Calycanthus floridus var. glaucus OX=212734 GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 306.6 bits (784), Expect = 2.7e-82
Identity = 153/168 (91.07%), Postives = 163/168 (97.02%), Query Frame = 0


Query: 1    MSLEKRIEGWNERITRILGIPWGFLIGAELTIVQSRISLVNKIQKVYRSQGVEIHNRHIE 60
            M+LEKR+EGWNERIT+ILGIPWGFLIGAELTI QSRISLVNKIQKVYRSQGV+IHNRHIE
Sbjct: 1161 MNLEKRVEGWNERITKILGIPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIE 1220

Query: 61   IIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAVLLGITKASLNTQ 120
            IIVRQITS+VLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICYRA+LLGIT+ASLNTQ
Sbjct: 1221 IIVRQITSRVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAILLGITRASLNTQ 1280

Query: 121  SFISEASFQETARVLAKAALRGRIDWLRGLKENVVLGGMIPVDRAYNG 169
            SFISEASFQETARVLAKAALRGRIDWL+GLKENVVLGGM+PV   + G
Sbjct: 1281 SFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGMMPVGTGFKG 1328

[Close]

BLAST of CsGy1G016820 vs. ExPASy Swiss-Prot
Match: A1XGM8 (DNA-directed RNA polymerase subunit beta'' OS=Ranunculus macranthus OX=334596 GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 306.6 bits (784), Expect = 2.7e-82
Identity = 155/168 (92.26%), Postives = 161/168 (95.83%), Query Frame = 0


Query: 1    MSLEKRIEGWNERITRILGIPWGFLIGAELTIVQSRISLVNKIQKVYRSQGVEIHNRHIE 60
            M+LE R+EGWNERITR LGIPWGFLIGAELTI QSRISLVNKIQKVYRSQGV+IHNRHIE
Sbjct: 1157 MNLENRVEGWNERITRTLGIPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIE 1216

Query: 61   IIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAVLLGITKASLNTQ 120
            IIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAVLLGIT+ASLNTQ
Sbjct: 1217 IIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAVLLGITRASLNTQ 1276

Query: 121  SFISEASFQETARVLAKAALRGRIDWLRGLKENVVLGGMIPVDRAYNG 169
            SFISEASFQETARVLAKAALRGRIDWL+GLKENVVLGGMIPV   + G
Sbjct: 1277 SFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGMIPVGTGFKG 1324

[Close]

BLAST of CsGy1G016820 vs. NCBI nr
Match: KAG6382270.1 (hypothetical protein SASPL_158084 [Salvia splendens])

HSP 1 Score: 408 bits (1049), Expect = 2.05e-135
Identity = 240/352 (68.18%), Postives = 253/352 (71.88%), Query Frame = 0


Query: 1   MSLEKRIEGWNERITRILGIPWGFLIGAELTIVQSRISLVNKIQKVYRSQGVEIHNRHIE 60
           M+LEKR+EGWNERITRILG+PW FLIGAELTIVQSRISLVNKIQKVYRSQGV+IHNRHIE
Sbjct: 367 MNLEKRVEGWNERITRILGMPWAFLIGAELTIVQSRISLVNKIQKVYRSQGVQIHNRHIE 426

Query: 61  IIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAVLLGITKASLNTQ 120
           IIVRQITSKVLVSE+GMSNVFSPGELIGLLRAER GRALEEA+CYRA+LLGIT+ASLNTQ
Sbjct: 427 IIVRQITSKVLVSEEGMSNVFSPGELIGLLRAERMGRALEEAVCYRALLLGITRASLNTQ 486

Query: 121 SFISEASFQETARVLAKAALRGRIDWLRGLKENVVLGGMIPVDRAY---------NG--- 180
           SFISEASFQETARVLAKAALRGRIDWL+GLKENVVLGGMIPV   +         NG   
Sbjct: 487 SFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGMIPVGTGHLNSKAIEKTNGLFV 546

Query: 181 -----------------------------------------------SPSLSA------- 240
                                                          +P +SA       
Sbjct: 547 YLRPIYGRREGGVWGEMTRRYWNINLEEMLEAGVHFGHGTRKWNPKMAPYISAKRKGSVT 606

Query: 241 --------------------------YEELIMNPLISAASVIAAGLAVGLASIGPGIGQG 260
                                     YEE IMNPLISAASVIAAGLAVGLASIGPG+GQG
Sbjct: 607 IAVRNPQTIPTGGQNFFEYILEFIRDYEEFIMNPLISAASVIAAGLAVGLASIGPGVGQG 666

[Close]

BLAST of CsGy1G016820 vs. NCBI nr
Match: KAG5512805.1 (hypothetical protein RHGRI_038766 [Rhododendron griersonianum] >KAG5512813.1 hypothetical protein RHGRI_038774 [Rhododendron griersonianum])

HSP 1 Score: 369 bits (947), Expect = 3.44e-125
Identity = 204/245 (83.27%), Postives = 215/245 (87.76%), Query Frame = 0


Query: 1   MSLEKRIEGWNERITRILGIPWGFLIGAELTIVQSRISLVNKIQKVYRSQGVEIHNRHIE 60
           M+LEKR+E WNE IT+ILGIPWGFLIGAELTIVQSRISLVNKIQ+VYRSQGV+IHNRHIE
Sbjct: 12  MNLEKRVEAWNEFITKILGIPWGFLIGAELTIVQSRISLVNKIQEVYRSQGVQIHNRHIE 71

Query: 61  IIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAVLLGITKASLNTQ 120
           +IVRQITSKVLVSEDGMSNVF PGELIGLLRAER GRALEEAI YRAVLLGIT+ASLNTQ
Sbjct: 72  LIVRQITSKVLVSEDGMSNVFLPGELIGLLRAERMGRALEEAIHYRAVLLGITRASLNTQ 131

Query: 121 SFISEASFQETARVLAKAALRGRIDWLRGLKENVVLGGMIPVDRAYNG----------SP 180
           SFISEASFQETARVLAKAALRGRIDWL+GLKENVVLGGMIPV  A  G            
Sbjct: 132 SFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGMIPVGSATIGVRNPQTIPTDGQ 191

Query: 181 SLSAY------EELIMNPLISAASVIAAGLAVGLASIGPGIGQGTAAGQAVEGIARQPEA 229
           +   Y      +EL+MNPLISAASVIAAGLAVGLASIGPGIGQGTAAGQAVEGIARQPEA
Sbjct: 192 NFFEYVLEFIRDELLMNPLISAASVIAAGLAVGLASIGPGIGQGTAAGQAVEGIARQPEA 251

[Close]

BLAST of CsGy1G016820 vs. NCBI nr
Match: KZV27571.1 (hypothetical protein F511_10975 [Dorcoceras hygrometricum])

HSP 1 Score: 382 bits (982), Expect = 1.77e-121
Identity = 207/245 (84.49%), Postives = 220/245 (89.80%), Query Frame = 0


Query: 1   MSLEKRIEGWNERITRILGIPWGFLIGAELTIVQSRISLVNKIQKVYRSQGVEIHNRHIE 60
           M+LEKR+E WNERITRILG+PW FLIGAELTIVQSRISLVNKIQKVYRSQGV+IHNRHIE
Sbjct: 398 MNLEKRVESWNERITRILGMPWAFLIGAELTIVQSRISLVNKIQKVYRSQGVQIHNRHIE 457

Query: 61  IIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAVLLGITKASLNTQ 120
           IIVRQITSKVLVSEDG+SNVFSPGELIGLLRAER GRALEEA+CYRA+LLGIT+ASLNTQ
Sbjct: 458 IIVRQITSKVLVSEDGLSNVFSPGELIGLLRAERMGRALEEAVCYRAILLGITRASLNTQ 517

Query: 121 SFISEASFQETARVLAKAALRGRIDWLRGLKENVVLGGMIPV----------DRAYNGSP 180
           SFISEASFQETARVLAKAALRGRIDWL+GLKENVVLGGMIPV           + +N SP
Sbjct: 518 SFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGMIPVGTGLKGFVPPSKQHNKSP 577

Query: 181 ------SLSAYEELIMNPLISAASVIAAGLAVGLASIGPGIGQGTAAGQAVEGIARQPEA 229
                 +L   EELIMNPLISAASVIAAGLAVGLASIGPG+GQGTAAGQAVEGIARQPEA
Sbjct: 578 LQTKKDNLFEGEELIMNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEA 637

[Close]

BLAST of CsGy1G016820 vs. NCBI nr
Match: KAG5513134.1 (hypothetical protein RHGRI_038254 [Rhododendron griersonianum])

HSP 1 Score: 369 bits (947), Expect = 2.03e-121
Identity = 204/245 (83.27%), Postives = 215/245 (87.76%), Query Frame = 0


Query: 1   MSLEKRIEGWNERITRILGIPWGFLIGAELTIVQSRISLVNKIQKVYRSQGVEIHNRHIE 60
           M+LEKR+E WNE IT+ILGIPWGFLIGAELTIVQSRISLVNKIQ+VYRSQGV+IHNRHIE
Sbjct: 287 MNLEKRVEAWNEFITKILGIPWGFLIGAELTIVQSRISLVNKIQEVYRSQGVQIHNRHIE 346

Query: 61  IIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAVLLGITKASLNTQ 120
           +IVRQITSKVLVSEDGMSNVF PGELIGLLRAER GRALEEAI YRAVLLGIT+ASLNTQ
Sbjct: 347 LIVRQITSKVLVSEDGMSNVFLPGELIGLLRAERMGRALEEAIHYRAVLLGITRASLNTQ 406

Query: 121 SFISEASFQETARVLAKAALRGRIDWLRGLKENVVLGGMIPVDRAYNG----------SP 180
           SFISEASFQETARVLAKAALRGRIDWL+GLKENVVLGGMIPV  A  G            
Sbjct: 407 SFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGMIPVGSATIGVRNPQTIPTDGQ 466

Query: 181 SLSAY------EELIMNPLISAASVIAAGLAVGLASIGPGIGQGTAAGQAVEGIARQPEA 229
           +   Y      +EL+MNPLISAASVIAAGLAVGLASIGPGIGQGTAAGQAVEGIARQPEA
Sbjct: 467 NFFEYVLEFIRDELLMNPLISAASVIAAGLAVGLASIGPGIGQGTAAGQAVEGIARQPEA 526

[Close]

BLAST of CsGy1G016820 vs. NCBI nr
Match: KAF7117216.1 (hypothetical protein RHSIM_RhsimPtG0004600 [Rhododendron simsii])

HSP 1 Score: 371 bits (952), Expect = 5.39e-118
Identity = 204/246 (82.93%), Postives = 216/246 (87.80%), Query Frame = 0


Query: 1   MSLEKRIEGWNERITRILGIPWGFLIGAELTIVQSRISLVNKIQKVYRSQGVEIHNRHIE 60
           M+LEKR+E WNE IT+ILGIPWGFLIGAELTIVQSRISLVNKIQ+VYRSQGV+IHNRHIE
Sbjct: 287 MNLEKRVEAWNECITKILGIPWGFLIGAELTIVQSRISLVNKIQEVYRSQGVQIHNRHIE 346

Query: 61  IIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAVLLGITKASLNTQ 120
           +IVRQITSKVLVSEDGMSNVF PGELIGLLRAER GRALEEAI YRAVLLGIT+ASLNTQ
Sbjct: 347 LIVRQITSKVLVSEDGMSNVFLPGELIGLLRAERMGRALEEAIHYRAVLLGITRASLNTQ 406

Query: 121 SFISEASFQETARVLAKAALRGRIDWLRGLKENVVLGGMIPVDRAYNG----------SP 180
           SFISEASFQETARVLAKAALRGRIDWL+GLKENVVLGGMIP+  A  G            
Sbjct: 407 SFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGMIPIGSATIGVRNPQTIPTDGQ 466

Query: 181 SLSAY------EELIMNPLISAASVIAAGLAVGLASIGPGIGQGTAAGQAVEGIARQPEA 230
           +   Y      +EL+MNPLISAASVIAAGLAVGLASIGPGIGQGTAAGQAVEGIARQPEA
Sbjct: 467 NFFEYVLEFIRDELLMNPLISAASVIAAGLAVGLASIGPGIGQGTAAGQAVEGIARQPEA 526

[Close]

BLAST of CsGy1G016820 vs. ExPASy TrEMBL
Match: A0A2Z7B0Z0 (ATP synthase subunit alpha, mitochondrial OS=Dorcoceras hygrometricum OX=472368 GN=F511_10975 PE=3 SV=1)

HSP 1 Score: 382 bits (982), Expect = 8.56e-122
Identity = 207/245 (84.49%), Postives = 220/245 (89.80%), Query Frame = 0


Query: 1   MSLEKRIEGWNERITRILGIPWGFLIGAELTIVQSRISLVNKIQKVYRSQGVEIHNRHIE 60
           M+LEKR+E WNERITRILG+PW FLIGAELTIVQSRISLVNKIQKVYRSQGV+IHNRHIE
Sbjct: 398 MNLEKRVESWNERITRILGMPWAFLIGAELTIVQSRISLVNKIQKVYRSQGVQIHNRHIE 457

Query: 61  IIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAVLLGITKASLNTQ 120
           IIVRQITSKVLVSEDG+SNVFSPGELIGLLRAER GRALEEA+CYRA+LLGIT+ASLNTQ
Sbjct: 458 IIVRQITSKVLVSEDGLSNVFSPGELIGLLRAERMGRALEEAVCYRAILLGITRASLNTQ 517

Query: 121 SFISEASFQETARVLAKAALRGRIDWLRGLKENVVLGGMIPV----------DRAYNGSP 180
           SFISEASFQETARVLAKAALRGRIDWL+GLKENVVLGGMIPV           + +N SP
Sbjct: 518 SFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGMIPVGTGLKGFVPPSKQHNKSP 577

Query: 181 ------SLSAYEELIMNPLISAASVIAAGLAVGLASIGPGIGQGTAAGQAVEGIARQPEA 229
                 +L   EELIMNPLISAASVIAAGLAVGLASIGPG+GQGTAAGQAVEGIARQPEA
Sbjct: 578 LQTKKDNLFEGEELIMNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEA 637

[Close]

BLAST of CsGy1G016820 vs. ExPASy TrEMBL
Match: A0A5A7P499 (DNA-directed RNA polymerase OS=Striga asiatica OX=4170 GN=STAS_03389 PE=3 SV=1)

HSP 1 Score: 327 bits (838), Expect = 2.51e-105
Identity = 209/344 (60.76%), Postives = 226/344 (65.70%), Query Frame = 0


Query: 1   MSLEKRIEGWNERITRILGIPWGFLIGAELTIVQSRISLVNKIQKVYRSQGVEIHNRHIE 60
           M+LEKR+EGWNERITRIL +PW FLIGAELTIVQSRISLVNKIQKVYRSQGV IHNRHIE
Sbjct: 279 MNLEKRVEGWNERITRILEMPWTFLIGAELTIVQSRISLVNKIQKVYRSQGVRIHNRHIE 338

Query: 61  IIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAVLLGITKASLNTQ 120
           IIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEA+ YRA+LLGIT+ASLNTQ
Sbjct: 339 IIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAVSYRALLLGITRASLNTQ 398

Query: 121 SFISEASFQETARVLAKAALRGRIDWLRGLKENVVLGGMIPV----------DRAYNGSP 180
           SFISEASFQETARVLAKAALRGRIDWL+GLKENVV GGMIPV           + +N SP
Sbjct: 399 SFISEASFQETARVLAKAALRGRIDWLKGLKENVVGGGMIPVGTGLKGLVLPSKQHNKSP 458

Query: 181 ------------------------------------------------------------ 240
                                                                       
Sbjct: 459 LETKKNNIFEGEMRDILRKQFLIVGTQKKEADSVAWAAKKARCHFCITLGIPTICLIDTN 518

Query: 241 --------SLSAYEE------LIMNPLISAASVIAAGLAVGLASIGPGIGQGTAAGQAVE 260
                   S+ A ++      LI+N L+ A   I  G    LASIGPGIGQGTAAGQAVE
Sbjct: 519 CDPDLADFSIPANDDSRSSIRLILNKLVFA---ICEGR---LASIGPGIGQGTAAGQAVE 578

[Close]

BLAST of CsGy1G016820 vs. ExPASy TrEMBL
Match: W9S0I0 (DNA-directed RNA polymerase OS=Morus notabilis OX=981085 GN=L484_013125 PE=4 SV=1)

HSP 1 Score: 305 bits (781), Expect = 7.19e-102
Identity = 154/168 (91.67%), Postives = 162/168 (96.43%), Query Frame = 0


Query: 1   MSLEKRIEGWNERITRILGIPWGFLIGAELTIVQSRISLVNKIQKVYRSQGVEIHNRHIE 60
           M+LEKR+EGWNERITRILGIPWGFLIGAELTIVQSRISLVNKIQKVYRSQGV+IHNRHIE
Sbjct: 1   MNLEKRVEGWNERITRILGIPWGFLIGAELTIVQSRISLVNKIQKVYRSQGVQIHNRHIE 60

Query: 61  IIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAVLLGITKASLNTQ 120
           IIVRQITSKVLVSEDGMSNVF PGELIGL RAERTGRAL+EAICY+A+LLGITKASLNTQ
Sbjct: 61  IIVRQITSKVLVSEDGMSNVFLPGELIGLFRAERTGRALKEAICYQAILLGITKASLNTQ 120

Query: 121 SFISEASFQETARVLAKAALRGRIDWLRGLKENVVLGGMIPVDRAYNG 168
           SFISEASFQETARVLAKAALRGRIDWL+GLKENVVLGGMIPV   + G
Sbjct: 121 SFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGMIPVGTGFKG 168

[Close]

BLAST of CsGy1G016820 vs. ExPASy TrEMBL
Match: A0A5E4GQH6 (DNA-directed RNA polymerase OS=Prunus dulcis OX=3755 GN=ALMOND_2B004049 PE=4 SV=1)

HSP 1 Score: 309 bits (791), Expect = 1.18e-101
Identity = 157/168 (93.45%), Postives = 163/168 (97.02%), Query Frame = 0


Query: 1   MSLEKRIEGWNERITRILGIPWGFLIGAELTIVQSRISLVNKIQKVYRSQGVEIHNRHIE 60
           M+LEKR+EGWNE ITRILGIPWGFLIGAELTIVQSRISLVNKIQKVYRSQGV+IHNRHIE
Sbjct: 138 MNLEKRVEGWNECITRILGIPWGFLIGAELTIVQSRISLVNKIQKVYRSQGVQIHNRHIE 197

Query: 61  IIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAVLLGITKASLNTQ 120
           IIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICYRA+LLGITKASLNTQ
Sbjct: 198 IIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAILLGITKASLNTQ 257

Query: 121 SFISEASFQETARVLAKAALRGRIDWLRGLKENVVLGGMIPVDRAYNG 168
           SFISEASFQETARVLAKAALRGRIDWL+GLKENVVLGGMIPV   + G
Sbjct: 258 SFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGMIPVGTGFKG 305

[Close]

BLAST of CsGy1G016820 vs. ExPASy TrEMBL
Match: A0A6J5XPE3 (DNA-directed RNA polymerase OS=Prunus armeniaca OX=36596 GN=ORAREDHAP_LOCUS38660 PE=4 SV=1)

HSP 1 Score: 309 bits (791), Expect = 1.18e-101
Identity = 157/168 (93.45%), Postives = 163/168 (97.02%), Query Frame = 0


Query: 1   MSLEKRIEGWNERITRILGIPWGFLIGAELTIVQSRISLVNKIQKVYRSQGVEIHNRHIE 60
           M+LEKR+EGWNE ITRILGIPWGFLIGAELTIVQSRISLVNKIQKVYRSQGV+IHNRHIE
Sbjct: 138 MNLEKRVEGWNECITRILGIPWGFLIGAELTIVQSRISLVNKIQKVYRSQGVQIHNRHIE 197

Query: 61  IIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAVLLGITKASLNTQ 120
           IIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICYRA+LLGITKASLNTQ
Sbjct: 198 IIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAILLGITKASLNTQ 257

Query: 121 SFISEASFQETARVLAKAALRGRIDWLRGLKENVVLGGMIPVDRAYNG 168
           SFISEASFQETARVLAKAALRGRIDWL+GLKENVVLGGMIPV   + G
Sbjct: 258 SFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGMIPVGTGFKG 305

[Close]

BLAST of CsGy1G016820 vs. TAIR 10
Match: ATCG00170.1 (DNA-directed RNA polymerase family protein )

HSP 1 Score: 298.1 bits (762), Expect = 6.8e-81
Identity = 151/167 (90.42%), Postives = 161/167 (96.41%), Query Frame = 0


Query: 1    MSLEKRIEGWNERITRILGIPWGFLIGAELTIVQSRISLVNKIQKVYRSQGVEIHNRHIE 60
            ++LEKRI+GWN+ ITRILGIPWGFLIGAELTIVQSRISLVNKIQKVYRSQGV+IHNRHIE
Sbjct: 1158 LNLEKRIKGWNKCITRILGIPWGFLIGAELTIVQSRISLVNKIQKVYRSQGVQIHNRHIE 1217

Query: 61   IIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAVLLGITKASLNTQ 120
            IIVRQITSKVLVSE+GMSNVF PGELIGLLRAERTGRALEEAICYRAVLLGIT+ASLNTQ
Sbjct: 1218 IIVRQITSKVLVSEEGMSNVFLPGELIGLLRAERTGRALEEAICYRAVLLGITRASLNTQ 1277

Query: 121  SFISEASFQETARVLAKAALRGRIDWLRGLKENVVLGGMIPVDRAYN 168
            SFISEASFQETARVLAKAALRGRIDWL+GLKENVVLGG+IP    +N
Sbjct: 1278 SFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGVIPAGTGFN 1324

[Close]

BLAST of CsGy1G016820 vs. TAIR 10
Match: ATCG00140.1 (ATP synthase subunit C family protein )

HSP 1 Score: 142.5 bits (358), Expect = 4.8e-34
Identity = 79/81 (97.53%), Postives = 81/81 (100.00%), Query Frame = 0


Query: 180 MNPLISAASVIAAGLAVGLASIGPGIGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFM 239
           MNPL+SAASVIAAGLAVGLASIGPG+GQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFM
Sbjct: 1   MNPLVSAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFM 60

Query: 240 EALTIYGLVVALALLFANPFV 261
           EALTIYGLVVALALLFANPFV
Sbjct: 61  EALTIYGLVVALALLFANPFV 81

The following BLAST results are available for this feature:

BLAST of CsGy1G016820 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q4VZP3	9.9e-85	97.59	DNA-directed RNA polymerase subunit beta'' OS=Cucumis sativus OX=3659 GN=rpoC2 P...	[more]
Q09FX1	2.4e-83	92.86	DNA-directed RNA polymerase subunit beta'' OS=Nandina domestica OX=41776 GN=rpoC...	[more]
Q0G9M9	2.1e-82	92.26	DNA-directed RNA polymerase subunit beta'' OS=Liriodendron tulipifera OX=3415 GN...	[more]
Q7YJY0	2.7e-82	91.07	DNA-directed RNA polymerase subunit beta'' OS=Calycanthus floridus var. glaucus ...	[more]
A1XGM8	2.7e-82	92.26	DNA-directed RNA polymerase subunit beta'' OS=Ranunculus macranthus OX=334596 GN...	[more]

BLAST of CsGy1G016820 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6382270.1	2.05e-135	68.18	hypothetical protein SASPL_158084 [Salvia splendens]	[more]
KAG5512805.1	3.44e-125	83.27	hypothetical protein RHGRI_038766 [Rhododendron griersonianum] >KAG5512813.1 hyp...	[more]
KZV27571.1	1.77e-121	84.49	hypothetical protein F511_10975 [Dorcoceras hygrometricum]	[more]
KAG5513134.1	2.03e-121	83.27	hypothetical protein RHGRI_038254 [Rhododendron griersonianum]	[more]
KAF7117216.1	5.39e-118	82.93	hypothetical protein RHSIM_RhsimPtG0004600 [Rhododendron simsii]	[more]

BLAST of CsGy1G016820 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2Z7B0Z0	8.56e-122	84.49	ATP synthase subunit alpha, mitochondrial OS=Dorcoceras hygrometricum OX=472368 ...	[more]
A0A5A7P499	2.51e-105	60.76	DNA-directed RNA polymerase OS=Striga asiatica OX=4170 GN=STAS_03389 PE=3 SV=1	[more]
W9S0I0	7.19e-102	91.67	DNA-directed RNA polymerase OS=Morus notabilis OX=981085 GN=L484_013125 PE=4 SV=...	[more]
A0A5E4GQH6	1.18e-101	93.45	DNA-directed RNA polymerase OS=Prunus dulcis OX=3755 GN=ALMOND_2B004049 PE=4 SV=...	[more]
A0A6J5XPE3	1.18e-101	93.45	DNA-directed RNA polymerase OS=Prunus armeniaca OX=36596 GN=ORAREDHAP_LOCUS38660...	[more]

BLAST of CsGy1G016820 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00170.1	6.8e-81	90.42	DNA-directed RNA polymerase family protein	[more]
ATCG00140.1	4.8e-34	97.53	ATP synthase subunit C family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000454	ATP synthase, F0 complex, subunit C	PRINTS	PR00124	ATPASEC	coord: 191..210 score: 42.45 coord: 212..227 score: 43.63 coord: 229..254 score: 44.46
IPR000454	ATP synthase, F0 complex, subunit C	HAMAP	MF_01396	ATP_synth_c_bact	coord: 189..254 score: 15.882034
IPR002379	V-ATPase proteolipid subunit C-like domain	PFAM	PF00137	ATP-synt_C	coord: 190..252 e-value: 2.1E-18 score: 66.4
IPR038662	F1F0 ATP synthase subunit C superfamily	GENE3D	1.20.20.10	F1F0 ATP synthase subunit C	coord: 176..260 e-value: 4.1E-32 score: 112.0
IPR005953	ATP synthase, F0 complex, subunit C, bacterial/chloroplast	TIGRFAM	TIGR01260	TIGR01260	coord: 199..256 e-value: 1.3E-18 score: 64.7
IPR007081	RNA polymerase Rpb1, domain 5	PFAM	PF04998	RNA_pol_Rpb1_5	coord: 31..118 e-value: 3.1E-8 score: 33.4
None	No IPR available	GENE3D	1.10.150.390		coord: 119..171 e-value: 1.6E-20 score: 74.3
None	No IPR available	GENE3D	1.10.1790.20		coord: 12..118 e-value: 4.5E-29 score: 103.0
None	No IPR available	PANTHER	PTHR19376	DNA-DIRECTED RNA POLYMERASE	coord: 1..171
None	No IPR available	PANTHER	PTHR19376:SF47	DNA-DIRECTED RNA POLYMERASE SUBUNIT BETA''	coord: 1..171
None	No IPR available	CDD	cd02655	RNAP_beta'_C	coord: 13..162 e-value: 6.0221E-65 score: 199.291
None	No IPR available	CDD	cd18183	ATP-synt_Fo_c_ATPH	coord: 183..257 e-value: 3.34363E-39 score: 129.191
None	No IPR available	SUPERFAMILY	64484	beta and beta-prime subunits of DNA dependent RNA-polymerase	coord: 34..162
IPR020537	ATP synthase, F0 complex, subunit C, DCCD-binding site	PROSITE	PS00605	ATPASE_C	coord: 219..240
IPR035921	F/V-ATP synthase subunit C superfamily	SUPERFAMILY	81333	F1F0 ATP synthase subunit C	coord: 182..258

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy1G016820.2	CsGy1G016820.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015986	ATP synthesis coupled proton transport
biological_process	GO:0006351	transcription, DNA-templated
biological_process	GO:1902600	proton transmembrane transport
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0031090	organelle membrane
cellular_component	GO:0045261	proton-transporting ATP synthase complex, catalytic core F(1)
cellular_component	GO:0045263	proton-transporting ATP synthase complex, coupling factor F(o)
cellular_component	GO:0033177	proton-transporting two-sector ATPase complex, proton-transporting domain
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0046933	proton-transporting ATP synthase activity, rotational mechanism
molecular_function	GO:0015078	proton transmembrane transporter activity