CsGy1G016790 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy1G016790
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	Photosystem II protein D1
Location	Gy14Chr1: 14127518 .. 14129220 (-)
RNA-Seq Expression	CsGy1G016790
Synteny	CsGy1G016790

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTGCAATTTTAGAGAGACGCGAAAGCGAAAGCCTATGGGGTCGTTTCTGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCAACTTCTGTATTTATTATTGCCTTCATTGCTGCTCCTCCAGTGGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTACGGAAACAATATTATTTCTGGTGCTATTATCCCTACCTCTGCAGCTATCGGTTTGCACTTTTACCCAATTTGGGAAGCTGCTTCCGTTGATGAATGGTTATACAACGGTGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCATGTTACATGGGTCGAGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCAGCTACTGCTGTTTTCTTGATTTACCCAATTGGTCAAGGAAGCTTTTCTGACGGTATGCCTCTAGGAATCTCTGTACTTTGAAGTCTTTGAATGGAATAAGGAACGACCGTAACGGATGTCGGCTCAATCCGAAGGAAATTATGCGGAAGCTCTACAGAATTATTATGAAGCTATGCGACTAGAAATCGATCCCTATGATCGAAGTTATATACTCTATAACATAGGTCTTATCCACACAAGGAACGGAGAACATACGAAAGCTTTGGAATATTATTTTCGGGCACTAGAACGAAACCCGTTCTTACCACAAGCTTTTAATAATATGGCTGTGATCTGTCATTACGTGCGACTATCTCCACTATAGAAAGAAAAAAAAGAGAAAATTCGCTAATAAATACTAAAAAAAAAATAGGCTTTCTACATATGTATTGTCCAAACTAACGATTTGTATCAGCTGTAGCAAAGAAAGAAACTTCATAGAAATAGAAATATGAAGAAATAGGTATGCCTAGATACTTTATTCTATGGATAAAGGATCTAATTGATAGAAGAAGCACCGTAAAGATCAATTAGTCAGGTTTTTGGCCGATACAATAAAAACTGCTTACTTATATCATGATATAAGATCAAAATGAAGGAATCCACTTATGTAATAGGGTGGATCCCCTACAATATTGAGCAGCGGTGTAGCATCAGATCCCAAAGACAGTAAGTCTTTTCTTTCTTATGAAGGAAAGTCTTTTTCAAGGATTCTATATAAATTTCTAGATGAAACCGAGATAGTTATCTTTCAGAAAATTGTAACGATAGTGGGTGGAATGCCTATGCTTTATTTTTCTGAAGGTGGGAGAAAAGATAAAACTTATTTAATTATTCAGCAAAATTGAAGTTTGAAACTTATATAATTAACCTCTTTTGCTTAACTCGAGAAAAAAAAATGGCCTAGATCTATGAAAAATTTCATTCAATTAGATTAGATATGGTAAATTTTTTAAAATATGGGACAGCAAAAGAATTGACTGTTGAGCCGTATGAGGTAGGAAACTCTCAAGTACGGTTCTAAGGGAAGGAATTTACCTGCCTATTCCGACCGGGGAGAACAGGCCATTCGACAGGGAGATTCTGAAATTGCGGAGGCTTGGTTCAATCAAGCCGCTGAGTATTGGAAACAAGCTATAGCGCTTACTCCCGGTAATTATATTGAAGCCCAAAATTGGTTGAAGATCACAAGGCGTTTCAAATAA

mRNA sequence

ATGACTGCAATTTTAGAGAGACGCGAAAGCGAAAGCCTATGGGGTCGTTTCTGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCAACTTCTGTATTTATTATTGCCTTCATTGCTGCTCCTCCAGTGGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTACGGAAACAATATTATTTCTGGTGCTATTATCCCTACCTCTGCAGCTATCGGTTTGCACTTTTACCCAATTTGGGAAGCTGCTTCCGTTGATGAATGGTTATACAACGGTGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCATGTTACATGGGTCGAGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCAGCTACTGCTGTTTTCTTGATTTACCCAATTGGTCAAGGAAGCTTTTCTGACGGTATGCCTCTAGGAATCTCTAATTATTATGAAGCTATGCGACTAGAAATCGATCCCTATGATCGAAAACGAAACCCGTTCTTACCACAAGCTTTTAATAATATGGCTGTGATCTGTCATTACGGTGGATCCCCTACAATATTGAGCAGCGGTGTAGCATCAGATCCCAAAGACAGTAAGTCTTTTCTTTCTTATGAAGGAAAGTCTTTTTCAAGGATTCTATATAAATTTCTAGATGAAACCGAGATAGTTATCTTTCAGAAAATTGAAACTCTCAAGTACGGTTCTAAGGGAAGGAATTTACCTGCCTATTCCGACCGGGGAGAACAGGCCATTCGACAGGGAGATTCTGAAATTGCGGAGGCTTGGTTCAATCAAGCCGCTGAGTATTGGAAACAAGCTATAGCGCTTACTCCCGGTAATTATATTGAAGCCCAAAATTGGTTGAAGATCACAAGGCGTTTCAAATAA

Coding sequence (CDS)

ATGACTGCAATTTTAGAGAGACGCGAAAGCGAAAGCCTATGGGGTCGTTTCTGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCAACTTCTGTATTTATTATTGCCTTCATTGCTGCTCCTCCAGTGGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTACGGAAACAATATTATTTCTGGTGCTATTATCCCTACCTCTGCAGCTATCGGTTTGCACTTTTACCCAATTTGGGAAGCTGCTTCCGTTGATGAATGGTTATACAACGGTGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCATGTTACATGGGTCGAGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCAGCTACTGCTGTTTTCTTGATTTACCCAATTGGTCAAGGAAGCTTTTCTGACGGTATGCCTCTAGGAATCTCTAATTATTATGAAGCTATGCGACTAGAAATCGATCCCTATGATCGAAAACGAAACCCGTTCTTACCACAAGCTTTTAATAATATGGCTGTGATCTGTCATTACGGTGGATCCCCTACAATATTGAGCAGCGGTGTAGCATCAGATCCCAAAGACAGTAAGTCTTTTCTTTCTTATGAAGGAAAGTCTTTTTCAAGGATTCTATATAAATTTCTAGATGAAACCGAGATAGTTATCTTTCAGAAAATTGAAACTCTCAAGTACGGTTCTAAGGGAAGGAATTTACCTGCCTATTCCGACCGGGGAGAACAGGCCATTCGACAGGGAGATTCTGAAATTGCGGAGGCTTGGTTCAATCAAGCCGCTGAGTATTGGAAACAAGCTATAGCGCTTACTCCCGGTAATTATATTGAAGCCCAAAATTGGTTGAAGATCACAAGGCGTTTCAAATAA

Protein sequence

MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISNYYEAMRLEIDPYDRKRNPFLPQAFNNMAVICHYGGSPTILSSGVASDPKDSKSFLSYEGKSFSRILYKFLDETEIVIFQKIETLKYGSKGRNLPAYSDRGEQAIRQGDSEIAEAWFNQAAEYWKQAIALTPGNYIEAQNWLKITRRFK*

Homology

[Close]

BLAST of CsGy1G016790 vs. ExPASy Swiss-Prot
Match: A4QJ96 (Photosystem II protein D1 OS=Aethionema cordifolium OX=434059 GN=psbA PE=3 SV=1)

HSP 1 Score: 367.1 bits (941), Expect = 2.1e-100
Identity = 185/214 (86.45%), Postives = 192/214 (89.72%), Query Frame = 0


Query: 1   MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDI 60
           MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDI
Sbjct: 1   MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDI 60

Query: 61  DGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFL 120
           DGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFL
Sbjct: 61  DGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFL 120

Query: 121 LGVACYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISNYY 180
           LGVACYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGIS  +
Sbjct: 121 LGVACYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTF 180

Query: 181 EAMRLEIDPYDRKRNPFLPQAFNNMAVICHYGGS 215
             M +    +  + N  L   F+ + V   +GGS
Sbjct: 181 NFMIV----FQAEHN-ILMHPFHMLGVAGVFGGS 209

[Close]

BLAST of CsGy1G016790 vs. ExPASy Swiss-Prot
Match: A4QJI0 (Photosystem II protein D1 OS=Aethionema grandiflorum OX=72657 GN=psbA PE=3 SV=1)

HSP 1 Score: 367.1 bits (941), Expect = 2.1e-100
Identity = 185/214 (86.45%), Postives = 192/214 (89.72%), Query Frame = 0


Query: 1   MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDI 60
           MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDI
Sbjct: 1   MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDI 60

Query: 61  DGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFL 120
           DGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFL
Sbjct: 61  DGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFL 120

Query: 121 LGVACYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISNYY 180
           LGVACYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGIS  +
Sbjct: 121 LGVACYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTF 180

Query: 181 EAMRLEIDPYDRKRNPFLPQAFNNMAVICHYGGS 215
             M +    +  + N  L   F+ + V   +GGS
Sbjct: 181 NFMIV----FQAEHN-ILMHPFHMLGVAGVFGGS 209

[Close]

BLAST of CsGy1G016790 vs. ExPASy Swiss-Prot
Match: P02956 (Photosystem II protein D1 OS=Amaranthus hybridus OX=3565 GN=psbA PE=3 SV=1)

HSP 1 Score: 367.1 bits (941), Expect = 2.1e-100
Identity = 185/214 (86.45%), Postives = 192/214 (89.72%), Query Frame = 0


Query: 1   MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDI 60
           MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDI
Sbjct: 1   MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDI 60

Query: 61  DGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFL 120
           DGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFL
Sbjct: 61  DGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFL 120

Query: 121 LGVACYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISNYY 180
           LGVACYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGIS  +
Sbjct: 121 LGVACYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTF 180

Query: 181 EAMRLEIDPYDRKRNPFLPQAFNNMAVICHYGGS 215
             M +    +  + N  L   F+ + V   +GGS
Sbjct: 181 NFMIV----FQAEHN-ILMHPFHMLGVAGVFGGS 209

[Close]

BLAST of CsGy1G016790 vs. ExPASy Swiss-Prot
Match: A4QJZ9 (Photosystem II protein D1 OS=Arabis hirsuta OX=78191 GN=psbA PE=3 SV=1)

HSP 1 Score: 367.1 bits (941), Expect = 2.1e-100
Identity = 185/214 (86.45%), Postives = 192/214 (89.72%), Query Frame = 0


Query: 1   MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDI 60
           MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDI
Sbjct: 1   MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDI 60

Query: 61  DGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFL 120
           DGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFL
Sbjct: 61  DGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFL 120

Query: 121 LGVACYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISNYY 180
           LGVACYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGIS  +
Sbjct: 121 LGVACYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTF 180

Query: 181 EAMRLEIDPYDRKRNPFLPQAFNNMAVICHYGGS 215
             M +    +  + N  L   F+ + V   +GGS
Sbjct: 181 NFMIV----FQAEHN-ILMHPFHMLGVAGVFGGS 209

[Close]

BLAST of CsGy1G016790 vs. ExPASy Swiss-Prot
Match: P83755 (Photosystem II protein D1 OS=Arabidopsis thaliana OX=3702 GN=psbA PE=1 SV=2)

HSP 1 Score: 367.1 bits (941), Expect = 2.1e-100
Identity = 185/214 (86.45%), Postives = 192/214 (89.72%), Query Frame = 0


Query: 1   MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDI 60
           MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDI
Sbjct: 1   MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDI 60

Query: 61  DGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFL 120
           DGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFL
Sbjct: 61  DGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFL 120

Query: 121 LGVACYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISNYY 180
           LGVACYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGIS  +
Sbjct: 121 LGVACYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTF 180

Query: 181 EAMRLEIDPYDRKRNPFLPQAFNNMAVICHYGGS 215
             M +    +  + N  L   F+ + V   +GGS
Sbjct: 181 NFMIV----FQAEHN-ILMHPFHMLGVAGVFGGS 209

[Close]

BLAST of CsGy1G016790 vs. NCBI nr
Match: YP_009336096.1 (photosystem II protein D1 [Ulmus laciniata] >APP88995.1 photosystem II protein D1 [Ulmus laciniata])

HSP 1 Score: 367 bits (943), Expect = 9.00e-125
Identity = 188/237 (79.32%), Postives = 203/237 (85.65%), Query Frame = 0


Query: 1   MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDI 60
           MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDI
Sbjct: 1   MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDI 60

Query: 61  DGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFL 120
           DGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFL
Sbjct: 61  DGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFL 120

Query: 121 LGVACYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISNYY 180
           LGVACYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGIS  +
Sbjct: 121 LGVACYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTF 180

Query: 181 EAMRLEIDPYDRKRNPFLPQAFNNMAVICHYGGS------PTILSSGVASDPKDSKS 231
             M +    +  + N  L   F+ + V   +GGS       ++++S +  + ++ KS
Sbjct: 181 NFMIV----FQAEHN-ILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRESREKKS 232

[Close]

BLAST of CsGy1G016790 vs. NCBI nr
Match: MUG03659.1 (photosystem II q(b) protein [Bacillus tequilensis])

HSP 1 Score: 366 bits (940), Expect = 9.23e-125
Identity = 185/214 (86.45%), Postives = 192/214 (89.72%), Query Frame = 0


Query: 1   MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDI 60
           MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDI
Sbjct: 1   MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDI 60

Query: 61  DGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFL 120
           DGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFL
Sbjct: 61  DGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFL 120

Query: 121 LGVACYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISNYY 180
           LGVACYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGIS  +
Sbjct: 121 LGVACYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTF 180

Query: 181 EAMRLEIDPYDRKRNPFLPQAFNNMAVICHYGGS 214
             M +    +  + N  L   F+ + V   +GGS
Sbjct: 181 NFMIV----FQAEHN-ILMHPFHMLGVAGVFGGS 209

[Close]

BLAST of CsGy1G016790 vs. NCBI nr
Match: YP_009900100.1 (PSII 32 KDa protein [Oreophyton falcatum] >QKK46994.1 PSII 32 KDa protein [Oreophyton falcatum])

HSP 1 Score: 366 bits (940), Expect = 9.91e-125
Identity = 185/214 (86.45%), Postives = 192/214 (89.72%), Query Frame = 0


Query: 1   MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDI 60
           MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDI
Sbjct: 1   MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDI 60

Query: 61  DGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFL 120
           DGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFL
Sbjct: 61  DGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFL 120

Query: 121 LGVACYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISNYY 180
           LGVACYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGIS  +
Sbjct: 121 LGVACYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTF 180

Query: 181 EAMRLEIDPYDRKRNPFLPQAFNNMAVICHYGGS 214
             M +    +  + N  L   F+ + V   +GGS
Sbjct: 181 NFMIV----FQAEHN-ILMHPFHMLGVAGVFGGS 209

[Close]

BLAST of CsGy1G016790 vs. NCBI nr
Match: OMP13930.1 (Photosynthetic reaction centre, L/M [Corchorus olitorius])

HSP 1 Score: 366 bits (940), Expect = 1.36e-124
Identity = 185/214 (86.45%), Postives = 192/214 (89.72%), Query Frame = 0


Query: 1   MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDI 60
           MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDI
Sbjct: 1   MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDI 60

Query: 61  DGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFL 120
           DGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFL
Sbjct: 61  DGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFL 120

Query: 121 LGVACYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISNYY 180
           LGVACYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGIS  +
Sbjct: 121 LGVACYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTF 180

Query: 181 EAMRLEIDPYDRKRNPFLPQAFNNMAVICHYGGS 214
             M +    +  + N  L   F+ + V   +GGS
Sbjct: 181 NFMIV----FQAEHN-ILMHPFHMLGVAGVFGGS 209

[Close]

BLAST of CsGy1G016790 vs. NCBI nr
Match: AWH03460.1 (photosystem II protein D1, partial [Asclepias macroura])

HSP 1 Score: 365 bits (936), Expect = 1.39e-124
Identity = 178/183 (97.27%), Postives = 179/183 (97.81%), Query Frame = 0


Query: 1   MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDI 60
           MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDI
Sbjct: 1   MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDI 60

Query: 61  DGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFL 120
           DGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFL
Sbjct: 61  DGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFL 120

Query: 121 LGVACYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISNYY 180
           LGVACYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGIS  +
Sbjct: 121 LGVACYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTF 180

Query: 181 EAM 183
             M
Sbjct: 181 NFM 183

[Close]

BLAST of CsGy1G016790 vs. ExPASy TrEMBL
Match: A0A2N9F305 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS9405 PE=3 SV=1)

HSP 1 Score: 368 bits (944), Expect = 3.67e-126
Identity = 178/181 (98.34%), Postives = 180/181 (99.45%), Query Frame = 0


Query: 1   MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDI 60
           MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDI
Sbjct: 1   MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDI 60

Query: 61  DGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFL 120
           DGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFL
Sbjct: 61  DGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFL 120

Query: 121 LGVACYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISNYY 180
           LGVACYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGIS Y+
Sbjct: 121 LGVACYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISEYF 180

[Close]

BLAST of CsGy1G016790 vs. ExPASy TrEMBL
Match: A0A1L5YDN5 (Photosystem II protein D1 OS=Ulmus laciniata OX=198265 GN=psbA PE=3 SV=1)

HSP 1 Score: 367 bits (943), Expect = 4.36e-125
Identity = 188/237 (79.32%), Postives = 203/237 (85.65%), Query Frame = 0


Query: 1   MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDI 60
           MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDI
Sbjct: 1   MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDI 60

Query: 61  DGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFL 120
           DGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFL
Sbjct: 61  DGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFL 120

Query: 121 LGVACYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISNYY 180
           LGVACYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGIS  +
Sbjct: 121 LGVACYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTF 180

Query: 181 EAMRLEIDPYDRKRNPFLPQAFNNMAVICHYGGS------PTILSSGVASDPKDSKS 231
             M +    +  + N  L   F+ + V   +GGS       ++++S +  + ++ KS
Sbjct: 181 NFMIV----FQAEHN-ILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRESREKKS 232

[Close]

BLAST of CsGy1G016790 vs. ExPASy TrEMBL
Match: A0A6M8Z701 (PSII 32 kDa protein OS=Oreophyton falcatum OX=664034 GN=psbA PE=3 SV=1)

HSP 1 Score: 366 bits (940), Expect = 4.80e-125
Identity = 185/214 (86.45%), Postives = 192/214 (89.72%), Query Frame = 0


Query: 1   MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDI 60
           MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDI
Sbjct: 1   MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDI 60

Query: 61  DGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFL 120
           DGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFL
Sbjct: 61  DGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFL 120

Query: 121 LGVACYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISNYY 180
           LGVACYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGIS  +
Sbjct: 121 LGVACYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTF 180

Query: 181 EAMRLEIDPYDRKRNPFLPQAFNNMAVICHYGGS 214
             M +    +  + N  L   F+ + V   +GGS
Sbjct: 181 NFMIV----FQAEHN-ILMHPFHMLGVAGVFGGS 209

[Close]

BLAST of CsGy1G016790 vs. ExPASy TrEMBL
Match: A0A1R3L3S4 (Photosynthetic reaction centre, L/M OS=Corchorus olitorius OX=93759 GN=COLO4_00599 PE=3 SV=1)

HSP 1 Score: 366 bits (940), Expect = 6.60e-125
Identity = 185/214 (86.45%), Postives = 192/214 (89.72%), Query Frame = 0


Query: 1   MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDI 60
           MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDI
Sbjct: 1   MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDI 60

Query: 61  DGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFL 120
           DGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFL
Sbjct: 61  DGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFL 120

Query: 121 LGVACYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISNYY 180
           LGVACYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGIS  +
Sbjct: 121 LGVACYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTF 180

Query: 181 EAMRLEIDPYDRKRNPFLPQAFNNMAVICHYGGS 214
             M +    +  + N  L   F+ + V   +GGS
Sbjct: 181 NFMIV----FQAEHN-ILMHPFHMLGVAGVFGGS 209

[Close]

BLAST of CsGy1G016790 vs. ExPASy TrEMBL
Match: A0A2S1NGX6 (Photosystem II protein D1 (Fragment) OS=Asclepias macroura OX=659973 GN=psbA PE=3 SV=1)

HSP 1 Score: 365 bits (936), Expect = 6.72e-125
Identity = 178/183 (97.27%), Postives = 179/183 (97.81%), Query Frame = 0


Query: 1   MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDI 60
           MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDI
Sbjct: 1   MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDI 60

Query: 61  DGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFL 120
           DGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFL
Sbjct: 61  DGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFL 120

Query: 121 LGVACYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISNYY 180
           LGVACYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGIS  +
Sbjct: 121 LGVACYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTF 180

Query: 181 EAM 183
             M
Sbjct: 181 NFM 183

[Close]

BLAST of CsGy1G016790 vs. TAIR 10
Match: ATCG00020.1 (photosystem II reaction center protein A )

HSP 1 Score: 367.1 bits (941), Expect = 1.5e-101
Identity = 185/214 (86.45%), Postives = 192/214 (89.72%), Query Frame = 0


Query: 1   MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDI 60
           MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDI
Sbjct: 1   MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDI 60

Query: 61  DGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFL 120
           DGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFL
Sbjct: 61  DGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFL 120

Query: 121 LGVACYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISNYY 180
           LGVACYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGIS  +
Sbjct: 121 LGVACYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTF 180

Query: 181 EAMRLEIDPYDRKRNPFLPQAFNNMAVICHYGGS 215
             M +    +  + N  L   F+ + V   +GGS
Sbjct: 181 NFMIV----FQAEHN-ILMHPFHMLGVAGVFGGS 209

[Close]

BLAST of CsGy1G016790 vs. TAIR 10
Match: ATCG00360.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 127.5 bits (319), Expect = 2.0e-29
Identity = 77/179 (43.02%), Postives = 82/179 (45.81%), Query Frame = 0


Query: 176 ISNYYEAMRLEIDPYDR----------------------------KRNPFLPQAFNNMAV 235
           + NYYEAMRLEIDPYDR                            +RNPFLPQAFNNMAV
Sbjct: 13  LQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAV 72

Query: 236 ICHYGGSPTILSSGVASDPKDSKSFLSYEGKSFSRILYKFLDETEIVIFQKIETLKYGSK 295
           ICHY                                                        
Sbjct: 73  ICHY-------------------------------------------------------- 126

Query: 296 GRNLPAYSDRGEQAIRQGDSEIAEAWFNQAAEYWKQAIALTPGNYIEAQNWLKITRRFK 327
                    RGEQAI+QGDSE+AEAWF QAAEYWKQAI LTPGNYIEAQNWL ITRRF+
Sbjct: 133 ---------RGEQAIQQGDSEMAEAWFAQAAEYWKQAITLTPGNYIEAQNWLTITRRFE 126

[Close]

BLAST of CsGy1G016790 vs. TAIR 10
Match: ATCG00270.1 (photosystem II reaction center protein D )

HSP 1 Score: 65.1 bits (157), Expect = 1.2e-10
Identity = 43/193 (22.28%), Postives = 87/193 (45.08%), Query Frame = 0


Query: 8   RESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPV 67
           ++ + L+    +W+   +  +++GW G+L+ P    A   +             G+    
Sbjct: 10  KDEKDLFDIMDDWL-RRDRFVFVGWSGLLLFPCAYFALGGWFTGTTFVTSWYTHGL---- 69

Query: 68  SGSLLYGNNIISGAIIPTSAAIGLHFYPIW---EAASVDEWLYNGGPYELIVLHFLLGVA 127
           + S L G N ++ A+   + ++      +W          W   GG +  + LH    + 
Sbjct: 70  ASSYLEGCNFLTAAVSTPANSLAHSLLLLWGPEAQGDFTRWCQLGGLWAFVALHGAFALI 129

Query: 128 CYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISNYYEAMR 187
            +M R++EL+  + +RP+ A+A+S P+A   +VFLIYP+GQ  +      G++  +  + 
Sbjct: 130 GFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFIL 189

Query: 188 LEIDPYDRKRNPF 198
                ++   NPF
Sbjct: 190 FFQGFHNWTLNPF 197

The following BLAST results are available for this feature:

BLAST of CsGy1G016790 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A4QJ96	2.1e-100	86.45	Photosystem II protein D1 OS=Aethionema cordifolium OX=434059 GN=psbA PE=3 SV=1	[more]
A4QJI0	2.1e-100	86.45	Photosystem II protein D1 OS=Aethionema grandiflorum OX=72657 GN=psbA PE=3 SV=1	[more]
P02956	2.1e-100	86.45	Photosystem II protein D1 OS=Amaranthus hybridus OX=3565 GN=psbA PE=3 SV=1	[more]
A4QJZ9	2.1e-100	86.45	Photosystem II protein D1 OS=Arabis hirsuta OX=78191 GN=psbA PE=3 SV=1	[more]
P83755	2.1e-100	86.45	Photosystem II protein D1 OS=Arabidopsis thaliana OX=3702 GN=psbA PE=1 SV=2	[more]

BLAST of CsGy1G016790 vs. NCBI nr


Match Name	E-value	Identity	Description
YP_009336096.1	9.00e-125	79.32	photosystem II protein D1 [Ulmus laciniata] >APP88995.1 photosystem II protein D...	[more]
MUG03659.1	9.23e-125	86.45	photosystem II q(b) protein [Bacillus tequilensis]	[more]
YP_009900100.1	9.91e-125	86.45	PSII 32 KDa protein [Oreophyton falcatum] >QKK46994.1 PSII 32 KDa protein [Oreop...	[more]
OMP13930.1	1.36e-124	86.45	Photosynthetic reaction centre, L/M [Corchorus olitorius]	[more]
AWH03460.1	1.39e-124	97.27	photosystem II protein D1, partial [Asclepias macroura]	[more]

BLAST of CsGy1G016790 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2N9F305	3.67e-126	98.34	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS9405 PE=3 SV=1	[more]
A0A1L5YDN5	4.36e-125	79.32	Photosystem II protein D1 OS=Ulmus laciniata OX=198265 GN=psbA PE=3 SV=1	[more]
A0A6M8Z701	4.80e-125	86.45	PSII 32 kDa protein OS=Oreophyton falcatum OX=664034 GN=psbA PE=3 SV=1	[more]
A0A1R3L3S4	6.60e-125	86.45	Photosynthetic reaction centre, L/M OS=Corchorus olitorius OX=93759 GN=COLO4_005...	[more]
A0A2S1NGX6	6.72e-125	97.27	Photosystem II protein D1 (Fragment) OS=Asclepias macroura OX=659973 GN=psbA PE=...	[more]

BLAST of CsGy1G016790 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00020.1	1.5e-101	86.45	photosystem II reaction center protein A	[more]
ATCG00360.1	2.0e-29	43.02	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
ATCG00270.1	1.2e-10	22.28	photosystem II reaction center protein D	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036854	Photosystem II protein D1/D2 superfamily	GENE3D	1.20.85.10		coord: 5..182 e-value: 1.1E-42 score: 147.7
IPR036854	Photosystem II protein D1/D2 superfamily	SUPERFAMILY	81483	Bacterial photosystem II reaction centre, L and M subunits	coord: 12..196
IPR000484	Photosynthetic reaction centre, L/M	PFAM	PF00124	Photo_RC	coord: 28..183 e-value: 2.7E-52 score: 177.6
IPR000484	Photosynthetic reaction centre, L/M	PANTHER	PTHR33149	PHOTOSYSTEM II PROTEIN D1	coord: 1..214
None	No IPR available	PANTHER	PTHR33149:SF32	PHOTOSYSTEM II PROTEIN D1	coord: 1..214

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy1G016790.2	CsGy1G016790.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009772	photosynthetic electron transport in photosystem II
biological_process	GO:0018298	protein-chromophore linkage
biological_process	GO:0009635	response to herbicide
biological_process	GO:0019684	photosynthesis, light reaction
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009523	photosystem II
molecular_function	GO:0016168	chlorophyll binding
molecular_function	GO:0045156	electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity
molecular_function	GO:0005506	iron ion binding
molecular_function	GO:0016682	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
molecular_function	GO:0010242	oxygen evolving activity