CsGy1G016720 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy1G016720
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	Dynein light chain
Location	Gy14Chr1: 13971903 .. 13972570 (-)
RNA-Seq Expression	CsGy1G016720
Synteny	CsGy1G016720

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCCATCTCTATTTCCATTCCTATTTGGCAGCCACCACAGATTTCCCATTCCCTTTTTTTAATTTCTTCACCTATATAATTAATAATAAGAAGAAGAATAACAAAAATAATAATCATCATCATCTTGAATCCGATTGAAAAGAAAGATGTTGGAAGGGAAGGCCACCGTGAAAGAAACCGACATGTCGGAGAAAATGCAGATGCACGCCATGGCCTCTGCTTCTCAAGCCCTCGATCTCTTCGACGTCTCCGATTCCCTCTCCCTTGCTTCCCATATCAAGAAGGTACGTTACGTTGGTTGTTACAGTATTACAATTCATTTAAATTTTTCATCAATGTTTTTCAATTCAAATTAGGATTTTGATGGTACTTATGGAAGTGGTTGGCAATGCGTGGTGGGTTCTAATTTCGGCTGCTTCTTCACTCATTCTATGGGCACTTTCATTTATTTTTCCCTTGAAACTCTCAATTTTCTCATCTTCAAATCCCCTTCCTAATTCATATCTTTAGGGCTACTCTCCTCTCTTTTCCCCCAACCCCCCTCGCTCTCTCTCTTCATCCCTAAAATTTTCATGGAACCACAAGCAACATCAAACCAACCGTACGTTGCTTATGTATTATTATTCTCACATGTGATCCATCTTTTAATTTCTCCTTCTGCTATGTATG

mRNA sequence

TCCATCTCTATTTCCATTCCTATTTGGCAGCCACCACAGATTTCCCATTCCCTTTTTTTAATTTCTTCACCTATATAATTAATAATAAGAAGAAGAATAACAAAAATAATAATCATCATCATCTTGAATCCGATTGAAAAGAAAGATGTTGGAAGGGAAGGCCACCGTGAAAGAAACCGACATGTCGGAGAAAATGCAGATGCACGCCATGGCCTCTGCTTCTCAAGCCCTCGATCTCTTCGACGTCTCCGATTCCCTCTCCCTTGCTTCCCATATCAAGAAGGATTTTGATGGTACTTATGGAAGTGGTTGGCAATGCGTGGTGGGTTCTAATTTCGGCTGCTTCTTCACTCATTCTATGGGCACTTTCATTTATTTTTCCCTTGAAACTCTCAATTTTCTCATCTTCAAATCCCCTTCCTAATTCATATCTTTAGGGCTACTCTCCTCTCTTTTCCCCCAACCCCCCTCGCTCTCTCTCTTCATCCCTAAAATTTTCATGGAACCACAAGCAACATCAAACCAACCGTACGTTGCTTATGTATTATTATTCTCACATGTGATCCATCTTTTAATTTCTCCTTCTGCTATGTATG

Coding sequence (CDS)

ATGTTGGAAGGGAAGGCCACCGTGAAAGAAACCGACATGTCGGAGAAAATGCAGATGCACGCCATGGCCTCTGCTTCTCAAGCCCTCGATCTCTTCGACGTCTCCGATTCCCTCTCCCTTGCTTCCCATATCAAGAAGGATTTTGATGGTACTTATGGAAGTGGTTGGCAATGCGTGGTGGGTTCTAATTTCGGCTGCTTCTTCACTCATTCTATGGGCACTTTCATTTATTTTTCCCTTGAAACTCTCAATTTTCTCATCTTCAAATCCCCTTCCTAA

Protein sequence

MLEGKATVKETDMSEKMQMHAMASASQALDLFDVSDSLSLASHIKKDFDGTYGSGWQCVVGSNFGCFFTHSMGTFIYFSLETLNFLIFKSPS*

Homology

[Close]

BLAST of CsGy1G016720 vs. ExPASy Swiss-Prot
Match: P61285 (Dynein light chain 1, cytoplasmic OS=Bos taurus OX=9913 GN=DYNLL1 PE=1 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 3.2e-14
Identity = 40/90 (44.44%), Postives = 57/90 (63.33%), Query Frame = 0


Query: 1  MLEGKATVKETDMSEKMQMHAMASASQALDLFDVSDSLSLASHIKKDFDGTYGSGWQCVV 60
          M + KA +K  DMSE+MQ  ++  A+QAL+ +++     +A+HIKK+FD  Y   W C+V
Sbjct: 1  MCDRKAVIKNADMSEEMQQDSVECATQALEKYNIEK--DIAAHIKKEFDKKYNPTWHCIV 60

Query: 61 GSNFGCFFTHSMGTFIYFSLETLNFLIFKS 91
          G NFG + TH    FIYF L  +  L+FKS
Sbjct: 61 GRNFGSYVTHETKHFIYFYLGQVAILLFKS 88

[Close]

BLAST of CsGy1G016720 vs. ExPASy Swiss-Prot
Match: P63167 (Dynein light chain 1, cytoplasmic OS=Homo sapiens OX=9606 GN=DYNLL1 PE=1 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 3.2e-14
Identity = 40/90 (44.44%), Postives = 57/90 (63.33%), Query Frame = 0


Query: 1  MLEGKATVKETDMSEKMQMHAMASASQALDLFDVSDSLSLASHIKKDFDGTYGSGWQCVV 60
          M + KA +K  DMSE+MQ  ++  A+QAL+ +++     +A+HIKK+FD  Y   W C+V
Sbjct: 1  MCDRKAVIKNADMSEEMQQDSVECATQALEKYNIEK--DIAAHIKKEFDKKYNPTWHCIV 60

Query: 61 GSNFGCFFTHSMGTFIYFSLETLNFLIFKS 91
          G NFG + TH    FIYF L  +  L+FKS
Sbjct: 61 GRNFGSYVTHETKHFIYFYLGQVAILLFKS 88

[Close]

BLAST of CsGy1G016720 vs. ExPASy Swiss-Prot
Match: P61273 (Dynein light chain 1, cytoplasmic OS=Macaca fascicularis OX=9541 GN=DYNLL1 PE=3 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 3.2e-14
Identity = 40/90 (44.44%), Postives = 57/90 (63.33%), Query Frame = 0


Query: 1  MLEGKATVKETDMSEKMQMHAMASASQALDLFDVSDSLSLASHIKKDFDGTYGSGWQCVV 60
          M + KA +K  DMSE+MQ  ++  A+QAL+ +++     +A+HIKK+FD  Y   W C+V
Sbjct: 1  MCDRKAVIKNADMSEEMQQDSVECATQALEKYNIEK--DIAAHIKKEFDKKYNPTWHCIV 60

Query: 61 GSNFGCFFTHSMGTFIYFSLETLNFLIFKS 91
          G NFG + TH    FIYF L  +  L+FKS
Sbjct: 61 GRNFGSYVTHETKHFIYFYLGQVAILLFKS 88

[Close]

BLAST of CsGy1G016720 vs. ExPASy Swiss-Prot
Match: P63168 (Dynein light chain 1, cytoplasmic OS=Mus musculus OX=10090 GN=Dynll1 PE=1 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 3.2e-14
Identity = 40/90 (44.44%), Postives = 57/90 (63.33%), Query Frame = 0


Query: 1  MLEGKATVKETDMSEKMQMHAMASASQALDLFDVSDSLSLASHIKKDFDGTYGSGWQCVV 60
          M + KA +K  DMSE+MQ  ++  A+QAL+ +++     +A+HIKK+FD  Y   W C+V
Sbjct: 1  MCDRKAVIKNADMSEEMQQDSVECATQALEKYNIEK--DIAAHIKKEFDKKYNPTWHCIV 60

Query: 61 GSNFGCFFTHSMGTFIYFSLETLNFLIFKS 91
          G NFG + TH    FIYF L  +  L+FKS
Sbjct: 61 GRNFGSYVTHETKHFIYFYLGQVAILLFKS 88

[Close]

BLAST of CsGy1G016720 vs. ExPASy Swiss-Prot
Match: P63169 (Dynein light chain 1, cytoplasmic OS=Oryctolagus cuniculus OX=9986 GN=DYNLL1 PE=1 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 3.2e-14
Identity = 40/90 (44.44%), Postives = 57/90 (63.33%), Query Frame = 0


Query: 1  MLEGKATVKETDMSEKMQMHAMASASQALDLFDVSDSLSLASHIKKDFDGTYGSGWQCVV 60
          M + KA +K  DMSE+MQ  ++  A+QAL+ +++     +A+HIKK+FD  Y   W C+V
Sbjct: 1  MCDRKAVIKNADMSEEMQQDSVECATQALEKYNIEK--DIAAHIKKEFDKKYNPTWHCIV 60

Query: 61 GSNFGCFFTHSMGTFIYFSLETLNFLIFKS 91
          G NFG + TH    FIYF L  +  L+FKS
Sbjct: 61 GRNFGSYVTHETKHFIYFYLGQVAILLFKS 88

[Close]

BLAST of CsGy1G016720 vs. NCBI nr
Match: XP_004150050.1 (dynein light chain 1, cytoplasmic [Cucumis sativus] >KAE8652965.1 hypothetical protein Csa_017734 [Cucumis sativus])

HSP 1 Score: 186 bits (472), Expect = 2.60e-59
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 0


Query: 1  MLEGKATVKETDMSEKMQMHAMASASQALDLFDVSDSLSLASHIKKDFDGTYGSGWQCVV 60
          MLEGKATVKETDMSEKMQMHAMASASQALDLFDVSDSLSLASHIKKDFDGTYGSGWQCVV
Sbjct: 1  MLEGKATVKETDMSEKMQMHAMASASQALDLFDVSDSLSLASHIKKDFDGTYGSGWQCVV 60

Query: 61 GSNFGCFFTHSMGTFIYFSLETLNFLIFKSPS 92
          GSNFGCFFTHSMGTFIYFSLETLNFLIFKSPS
Sbjct: 61 GSNFGCFFTHSMGTFIYFSLETLNFLIFKSPS 92

[Close]

BLAST of CsGy1G016720 vs. NCBI nr
Match: XP_008462685.1 (PREDICTED: dynein light chain 1, cytoplasmic-like [Cucumis melo])

HSP 1 Score: 179 bits (455), Expect = 1.02e-56
Identity = 89/92 (96.74%), Postives = 90/92 (97.83%), Query Frame = 0


Query: 1  MLEGKATVKETDMSEKMQMHAMASASQALDLFDVSDSLSLASHIKKDFDGTYGSGWQCVV 60
          MLEGKATVKETDMSEKMQMHAMASAS ALDLFDVSD LSLAS+IKKDFDGTYGSGWQCVV
Sbjct: 1  MLEGKATVKETDMSEKMQMHAMASASHALDLFDVSDFLSLASYIKKDFDGTYGSGWQCVV 60

Query: 61 GSNFGCFFTHSMGTFIYFSLETLNFLIFKSPS 92
          GSNFGCFFTHSMGTFIYFSLETLNFLIFKSPS
Sbjct: 61 GSNFGCFFTHSMGTFIYFSLETLNFLIFKSPS 92

[Close]

BLAST of CsGy1G016720 vs. NCBI nr
Match: XP_038878771.1 (dynein light chain 1, cytoplasmic-like [Benincasa hispida])

HSP 1 Score: 172 bits (435), Expect = 1.19e-53
Identity = 85/92 (92.39%), Postives = 87/92 (94.57%), Query Frame = 0


Query: 1  MLEGKATVKETDMSEKMQMHAMASASQALDLFDVSDSLSLASHIKKDFDGTYGSGWQCVV 60
          MLEGKATVKETDMSEKMQ HAMASAS ALDLFDVSDSLSLA+HIKKDFD  YGSGWQCVV
Sbjct: 1  MLEGKATVKETDMSEKMQSHAMASASHALDLFDVSDSLSLAAHIKKDFDRAYGSGWQCVV 60

Query: 61 GSNFGCFFTHSMGTFIYFSLETLNFLIFKSPS 92
          GSNFGCFFTHS G+FIYFSLETLNFLIFKSPS
Sbjct: 61 GSNFGCFFTHSKGSFIYFSLETLNFLIFKSPS 92

[Close]

BLAST of CsGy1G016720 vs. NCBI nr
Match: XP_022933771.1 (dynein light chain 1, cytoplasmic-like [Cucurbita moschata] >XP_022973196.1 dynein light chain 1, cytoplasmic-like [Cucurbita maxima] >XP_023529424.1 dynein light chain 1, cytoplasmic-like [Cucurbita pepo subsp. pepo] >KAG6587968.1 hypothetical protein SDJN03_16533, partial [Cucurbita argyrosperma subsp. sororia] >KAG7021857.1 hypothetical protein SDJN02_15585 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 163 bits (413), Expect = 2.70e-50
Identity = 80/92 (86.96%), Postives = 86/92 (93.48%), Query Frame = 0


Query: 1  MLEGKATVKETDMSEKMQMHAMASASQALDLFDVSDSLSLASHIKKDFDGTYGSGWQCVV 60
          MLEGKATVK+TDMSEKMQ+HA ASAS ALDLFDVSD LSLA+HIKK+FD +YGSGWQCVV
Sbjct: 1  MLEGKATVKQTDMSEKMQIHAKASASHALDLFDVSDCLSLAAHIKKEFDRSYGSGWQCVV 60

Query: 61 GSNFGCFFTHSMGTFIYFSLETLNFLIFKSPS 92
          GSNFGCFFTHS GTFIYFSLETLNFLIFK+ S
Sbjct: 61 GSNFGCFFTHSKGTFIYFSLETLNFLIFKAAS 92

[Close]

BLAST of CsGy1G016720 vs. NCBI nr
Match: TKY45912.1 (Dynein light chain LC6 [Spatholobus suberectus])

HSP 1 Score: 159 bits (401), Expect = 1.83e-48
Identity = 76/92 (82.61%), Postives = 84/92 (91.30%), Query Frame = 0


Query: 1  MLEGKATVKETDMSEKMQMHAMASASQALDLFDVSDSLSLASHIKKDFDGTYGSGWQCVV 60
          MLEGKATVKETDM  KMQ+HAMASASQALDL DVSD +S+A+HIKK+FDG YG+GWQCVV
Sbjct: 1  MLEGKATVKETDMPRKMQIHAMASASQALDLCDVSDCISIAAHIKKEFDGVYGNGWQCVV 60

Query: 61 GSNFGCFFTHSMGTFIYFSLETLNFLIFKSPS 92
          GSNFGC+FTHS GTFIYF+LETLNFLIFK  S
Sbjct: 61 GSNFGCYFTHSPGTFIYFALETLNFLIFKGTS 92

[Close]

BLAST of CsGy1G016720 vs. ExPASy TrEMBL
Match: A0A1S3CJ38 (Dynein light chain OS=Cucumis melo OX=3656 GN=LOC103500988 PE=3 SV=1)

HSP 1 Score: 179 bits (455), Expect = 4.95e-57
Identity = 89/92 (96.74%), Postives = 90/92 (97.83%), Query Frame = 0


Query: 1  MLEGKATVKETDMSEKMQMHAMASASQALDLFDVSDSLSLASHIKKDFDGTYGSGWQCVV 60
          MLEGKATVKETDMSEKMQMHAMASAS ALDLFDVSD LSLAS+IKKDFDGTYGSGWQCVV
Sbjct: 1  MLEGKATVKETDMSEKMQMHAMASASHALDLFDVSDFLSLASYIKKDFDGTYGSGWQCVV 60

Query: 61 GSNFGCFFTHSMGTFIYFSLETLNFLIFKSPS 92
          GSNFGCFFTHSMGTFIYFSLETLNFLIFKSPS
Sbjct: 61 GSNFGCFFTHSMGTFIYFSLETLNFLIFKSPS 92

[Close]

BLAST of CsGy1G016720 vs. ExPASy TrEMBL
Match: A0A6J1I806 (Dynein light chain OS=Cucurbita maxima OX=3661 GN=LOC111471695 PE=3 SV=1)

HSP 1 Score: 163 bits (413), Expect = 1.31e-50
Identity = 80/92 (86.96%), Postives = 86/92 (93.48%), Query Frame = 0


Query: 1  MLEGKATVKETDMSEKMQMHAMASASQALDLFDVSDSLSLASHIKKDFDGTYGSGWQCVV 60
          MLEGKATVK+TDMSEKMQ+HA ASAS ALDLFDVSD LSLA+HIKK+FD +YGSGWQCVV
Sbjct: 1  MLEGKATVKQTDMSEKMQIHAKASASHALDLFDVSDCLSLAAHIKKEFDRSYGSGWQCVV 60

Query: 61 GSNFGCFFTHSMGTFIYFSLETLNFLIFKSPS 92
          GSNFGCFFTHS GTFIYFSLETLNFLIFK+ S
Sbjct: 61 GSNFGCFFTHSKGTFIYFSLETLNFLIFKAAS 92

[Close]

BLAST of CsGy1G016720 vs. ExPASy TrEMBL
Match: A0A6J1EZZ1 (Dynein light chain OS=Cucurbita moschata OX=3662 GN=LOC111441083 PE=3 SV=1)

HSP 1 Score: 163 bits (413), Expect = 1.31e-50
Identity = 80/92 (86.96%), Postives = 86/92 (93.48%), Query Frame = 0


Query: 1  MLEGKATVKETDMSEKMQMHAMASASQALDLFDVSDSLSLASHIKKDFDGTYGSGWQCVV 60
          MLEGKATVK+TDMSEKMQ+HA ASAS ALDLFDVSD LSLA+HIKK+FD +YGSGWQCVV
Sbjct: 1  MLEGKATVKQTDMSEKMQIHAKASASHALDLFDVSDCLSLAAHIKKEFDRSYGSGWQCVV 60

Query: 61 GSNFGCFFTHSMGTFIYFSLETLNFLIFKSPS 92
          GSNFGCFFTHS GTFIYFSLETLNFLIFK+ S
Sbjct: 61 GSNFGCFFTHSKGTFIYFSLETLNFLIFKAAS 92

[Close]

BLAST of CsGy1G016720 vs. ExPASy TrEMBL
Match: A0A6J1CTX2 (Dynein light chain OS=Momordica charantia OX=3673 GN=LOC111014529 PE=3 SV=1)

HSP 1 Score: 156 bits (395), Expect = 7.06e-48
Identity = 77/91 (84.62%), Postives = 81/91 (89.01%), Query Frame = 0


Query: 1  MLEGKATVKETDMSEKMQMHAMASASQALDLFDVSDSLSLASHIKKDFDGTYGSGWQCVV 60
          MLEGK  VKETDMSEKMQ+HAMASAS ALDLFDVSD LSLA+HIKK+FD TYG GWQCVV
Sbjct: 1  MLEGKGRVKETDMSEKMQIHAMASASHALDLFDVSDCLSLAAHIKKEFDRTYGGGWQCVV 60

Query: 61 GSNFGCFFTHSMGTFIYFSLETLNFLIFKSP 91
          GSNFG FFTHS  TFIYF+LETLNFLIFK P
Sbjct: 61 GSNFGSFFTHSTATFIYFALETLNFLIFKPP 91

[Close]

BLAST of CsGy1G016720 vs. ExPASy TrEMBL
Match: A0A0B2SA87 (Dynein light chain OS=Glycine soja OX=3848 GN=D0Y65_013121 PE=3 SV=1)

HSP 1 Score: 155 bits (393), Expect = 1.47e-47
Identity = 74/92 (80.43%), Postives = 83/92 (90.22%), Query Frame = 0


Query: 1  MLEGKATVKETDMSEKMQMHAMASASQALDLFDVSDSLSLASHIKKDFDGTYGSGWQCVV 60
          MLEGKA VKETDMS KMQ+HAMASASQALDL+DV D +S+A+HIKK+FD  YG+GWQCVV
Sbjct: 1  MLEGKAMVKETDMSPKMQIHAMASASQALDLYDVYDCISIAAHIKKEFDSVYGNGWQCVV 60

Query: 61 GSNFGCFFTHSMGTFIYFSLETLNFLIFKSPS 92
          GSNFGC+FTHS GTFIYF+LETLNFLIFK  S
Sbjct: 61 GSNFGCYFTHSSGTFIYFALETLNFLIFKGTS 92

[Close]

BLAST of CsGy1G016720 vs. TAIR 10
Match: AT1G52240.2 (RHO guanyl-nucleotide exchange factor 11 )

HSP 1 Score: 141.0 bits (354), Expect = 4.9e-34
Identity = 71/92 (77.17%), Postives = 76/92 (82.61%), Query Frame = 0


Query: 1  MLEGKATVKETDMSEKMQMHAMASASQALDLFDVSDSLSLASHIKKDFDGTYGSGWQCVV 60
          MLEGKA V+++DM  KMQM AMA ASQALDLFDV D  S+A HIKK+FD  YGSGWQCVV
Sbjct: 1  MLEGKAMVEDSDMPVKMQMQAMAFASQALDLFDVFDCKSIAGHIKKEFDERYGSGWQCVV 60

Query: 61 GSNFGCFFTHSMGTFIYFSLETLNFLIFKSPS 93
          GSNFGCFFTHS GTFIYF LETL FLIFK  S
Sbjct: 61 GSNFGCFFTHSKGTFIYFQLETLKFLIFKGAS 92

[Close]

BLAST of CsGy1G016720 vs. TAIR 10
Match: AT3G16120.1 (Dynein light chain type 1 family protein )

HSP 1 Score: 140.6 bits (353), Expect = 6.4e-34
Identity = 70/89 (78.65%), Postives = 77/89 (86.52%), Query Frame = 0


Query: 1  MLEGKATVKETDMSEKMQMHAMASASQALDLFDVSDSLSLASHIKKDFDGTYGSGWQCVV 60
          MLEGKA V+ETDM  KMQM AM  ASQ+LDLFDV DS+S+A+HIKK+FD  YGSGWQCVV
Sbjct: 1  MLEGKAKVEETDMPVKMQMQAMKIASQSLDLFDVFDSISIAAHIKKEFDERYGSGWQCVV 60

Query: 61 GSNFGCFFTHSMGTFIYFSLETLNFLIFK 90
          G+NFGCFFTHS GTFIYF L TLNFLIFK
Sbjct: 61 GTNFGCFFTHSKGTFIYFHLGTLNFLIFK 89

[Close]

BLAST of CsGy1G016720 vs. TAIR 10
Match: AT4G27360.1 (Dynein light chain type 1 family protein )

HSP 1 Score: 100.1 bits (248), Expect = 9.7e-22
Identity = 48/89 (53.93%), Postives = 67/89 (75.28%), Query Frame = 0


Query: 1  MLEGKATVKETDMSEKMQMHAMASASQALDLFDVSDSLSLASHIKKDFDGTYGSGWQCVV 60
          MLEGKA + +TDM + M+  A++ AS+ALD FDV++   +A  IKK+FD +YGSGWQC+V
Sbjct: 1  MLEGKAVMGDTDMKQTMKEDALSLASKALDCFDVTEPTQIARFIKKEFDRSYGSGWQCIV 60

Query: 61 GSNFGCFFTHSMGTFIYFSLETLNFLIFK 90
          G++FG F TH  G FI+FS+ +L  L+FK
Sbjct: 61 GTHFGSFVTHCSGCFIHFSVGSLTILLFK 89

[Close]

BLAST of CsGy1G016720 vs. TAIR 10
Match: AT1G52240.1 (RHO guanyl-nucleotide exchange factor 11 )

HSP 1 Score: 85.1 bits (209), Expect = 3.2e-17
Identity = 43/59 (72.88%), Postives = 48/59 (81.36%), Query Frame = 0


Query: 1  MLEGKATVKETDMSEKMQMHAMASASQALDLFDVSDSLSLASHIKKDFDGTYGSGWQCV 60
          MLEGKA V+++DM  KMQM AMA ASQALDLFDV D  S+A HIKK+FD  YGSGWQCV
Sbjct: 1  MLEGKAMVEDSDMPVKMQMQAMAFASQALDLFDVFDCKSIAGHIKKEFDERYGSGWQCV 59

[Close]

BLAST of CsGy1G016720 vs. TAIR 10
Match: AT5G20110.1 (Dynein light chain type 1 family protein )

HSP 1 Score: 75.9 bits (185), Expect = 2.0e-14
Identity = 38/79 (48.10%), Postives = 49/79 (62.03%), Query Frame = 0


Query: 12  DMSEKMQMHAMASASQALDLFDVSDSLSLASHIKKDFDGTYGSGWQCVVGSNFGCFFTHS 71
           DM   MQ HA   A   LD  +   S  +A ++KK+FD  YG  W C+VGS+FG F THS
Sbjct: 123 DMPGFMQAHAFRCARMTLDSLEKFSSKHMAFNLKKEFDKGYGPAWHCIVGSSFGSFVTHS 182

Query: 72  MGTFIYFSLETLNFLIFKS 91
            G FIYFS++ L  L+FK+
Sbjct: 183 TGCFIYFSMDKLYVLLFKT 201

The following BLAST results are available for this feature:

BLAST of CsGy1G016720 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P61285	3.2e-14	44.44	Dynein light chain 1, cytoplasmic OS=Bos taurus OX=9913 GN=DYNLL1 PE=1 SV=1	[more]
P63167	3.2e-14	44.44	Dynein light chain 1, cytoplasmic OS=Homo sapiens OX=9606 GN=DYNLL1 PE=1 SV=1	[more]
P61273	3.2e-14	44.44	Dynein light chain 1, cytoplasmic OS=Macaca fascicularis OX=9541 GN=DYNLL1 PE=3 ...	[more]
P63168	3.2e-14	44.44	Dynein light chain 1, cytoplasmic OS=Mus musculus OX=10090 GN=Dynll1 PE=1 SV=1	[more]
P63169	3.2e-14	44.44	Dynein light chain 1, cytoplasmic OS=Oryctolagus cuniculus OX=9986 GN=DYNLL1 PE=...	[more]

BLAST of CsGy1G016720 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004150050.1	2.60e-59	100.00	dynein light chain 1, cytoplasmic [Cucumis sativus] >KAE8652965.1 hypothetical p...	[more]
XP_008462685.1	1.02e-56	96.74	PREDICTED: dynein light chain 1, cytoplasmic-like [Cucumis melo]	[more]
XP_038878771.1	1.19e-53	92.39	dynein light chain 1, cytoplasmic-like [Benincasa hispida]	[more]
XP_022933771.1	2.70e-50	86.96	dynein light chain 1, cytoplasmic-like [Cucurbita moschata] >XP_022973196.1 dyne...	[more]
TKY45912.1	1.83e-48	82.61	Dynein light chain LC6 [Spatholobus suberectus]	[more]

BLAST of CsGy1G016720 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3CJ38	4.95e-57	96.74	Dynein light chain OS=Cucumis melo OX=3656 GN=LOC103500988 PE=3 SV=1	[more]
A0A6J1I806	1.31e-50	86.96	Dynein light chain OS=Cucurbita maxima OX=3661 GN=LOC111471695 PE=3 SV=1	[more]
A0A6J1EZZ1	1.31e-50	86.96	Dynein light chain OS=Cucurbita moschata OX=3662 GN=LOC111441083 PE=3 SV=1	[more]
A0A6J1CTX2	7.06e-48	84.62	Dynein light chain OS=Momordica charantia OX=3673 GN=LOC111014529 PE=3 SV=1	[more]
A0A0B2SA87	1.47e-47	80.43	Dynein light chain OS=Glycine soja OX=3848 GN=D0Y65_013121 PE=3 SV=1	[more]

BLAST of CsGy1G016720 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G52240.2	4.9e-34	77.17	RHO guanyl-nucleotide exchange factor 11	[more]
AT3G16120.1	6.4e-34	78.65	Dynein light chain type 1 family protein	[more]
AT4G27360.1	9.7e-22	53.93	Dynein light chain type 1 family protein	[more]
AT1G52240.1	3.2e-17	72.88	RHO guanyl-nucleotide exchange factor 11	[more]
AT5G20110.1	2.0e-14	48.10	Dynein light chain type 1 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001372	Dynein light chain, type 1/2	SMART	SM01375	Dynein_light_2	coord: 1..90 e-value: 6.3E-42 score: 155.3
IPR001372	Dynein light chain, type 1/2	PFAM	PF01221	Dynein_light	coord: 5..90 e-value: 2.4E-31 score: 108.0
IPR001372	Dynein light chain, type 1/2	PANTHER	PTHR11886	DYNEIN LIGHT CHAIN	coord: 1..92
IPR037177	Dynein light chain superfamily	GENE3D	3.30.740.10	Protein Inhibitor Of Neuronal Nitric Oxide Synthase;	coord: 2..90 e-value: 1.5E-31 score: 110.2
IPR037177	Dynein light chain superfamily	SUPERFAMILY	54648	DLC	coord: 1..91
None	No IPR available	PANTHER	PTHR11886:SF71	DYNEIN LIGHT CHAIN	coord: 1..92

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy1G016720.2	CsGy1G016720.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007017	microtubule-based process
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0030286	dynein complex
cellular_component	GO:0005874	microtubule
molecular_function	GO:0045505	dynein intermediate chain binding
molecular_function	GO:0051959	dynein light intermediate chain binding