CsGy1G016685 (gene) Cucumber (Gy14) v2.1

Overview
NameCsGy1G016685
Typegene
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
DescriptionF-box protein
LocationGy14Chr1: 13935924 .. 13936702 (+)
RNA-Seq ExpressionCsGy1G016685
SyntenyCsGy1G016685
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TAGAAACAAATGGAGGCAACTTCATTCCCTACCTTATCTCATTGACGATGGTGGTATTTACATGGATGGAGTCATCTATTTTGTGGGAAAAGTAAAAAATAAACCAAATGACTATGCCATCTATGCTCTCGATGTTGAAACTGAAAAAATTGAATTGAGTGCTGTCTTGAAAGCTGGACGTGGCCCAAGCTCTTCCCGCTCGCGAATACTACAATCTAATGGCATTGTTTATGCCATTATTTACGTCAACCTACCAACAACAACAACTCATTCCCAAGTGATGCAAGGCGTTCAAGTGTGGAGGATGCAAAAGAAAAACTCATGGATCAGAGAATTTGAGATCAGAAAATTTGTTATGAATGGCATGCCAGGCTCAATTATCCTTATCAAAGCGGAAGAGGTTTTGTGTAAGTTTGGTGGATCCAGTTTTTGCTGGTATAATGCTTCCACAAGGACGAAGAAGATGATTAGGAAGACTAAAAGTAAGTGCTTAGTGGGCATTTGTCAAATAGAAACCTTGAATTTTGGCTTACTTCGAAACATTTTAGCTGGTGATGGGAAGGAGAACCGTTATAATTCTAATTAGAAGCAAAAGGAGAACGATGAAAAGCAGAAGGCAGGTTAGGTTGAAGATTATGGTTCGCTTTTGTTTTTTCACACACCATGTAATCAACAGTTAGTTTTTTTTCCGCATGCACCATGTAATCAGAACGCCAAATTTGATTGGAATTAGAACATATAATTGTAGGATGTGTTTCTAAATATAAATAGGTTATGAT

mRNA sequence

TAGAAACAAATGGAGGCAACTTCATTCCCTACCTTATCTCATTGACGATGGTGGTATTTACATGGATGGAGTCATCTATTTTGTGGGAAAAGTAAAAAATAAACCAAATGACTATGCCATCTATGCTCTCGATGTTGAAACTGAAAAAATTGAATTGAGTGCTGTCTTGAAAGCTGGACGTGGCCCAAGCTCTTCCCGCTCGCGAATACTACAATCTAATGGCATTGTTTATGCCATTATTTACGTCAACCTACCAACAACAACAACTCATTCCCAAGTGATGCAAGGCGTTCAAGTGTGGAGGATGCAAAAGAAAAACTCATGGATCAGAGAATTTGAGATCAGAAAATTTGTTATGAATGGCATGCCAGGCTCAATTATCCTTATCAAAGCGGAAGAGGTTTTGTGTAAGTTTGGTGGATCCAGTTTTTGCTGGTATAATGCTTCCACAAGGACGAAGAAGATGATTAGGAAGACTAAAAGTAAGTGCTTAGTGGGCATTTGTCAAATAGAAACCTTGAATTTTGGCTTACTTCGAAACATTTTAGCTGGTGATGGGAAGGAGAACCGTTATAATTCTAATTAGAAGCAAAAGGAGAACGATGAAAAGCAGAAGGCAGGTTAGGTTGAAGATTATGGTTCGCTTTTGTTTTTTCACACACCATGTAATCAACAGTTAGTTTTTTTTCCGCATGCACCATGTAATCAGAACGCCAAATTTGATTGGAATTAGAACATATAATTGTAGGATGTGTTTCTAAATATAAATAGGTTATGAT

Coding sequence (CDS)

ATGGATGGAGTCATCTATTTTGTGGGAAAAGTAAAAAATAAACCAAATGACTATGCCATCTATGCTCTCGATGTTGAAACTGAAAAAATTGAATTGAGTGCTGTCTTGAAAGCTGGACGTGGCCCAAGCTCTTCCCGCTCGCGAATACTACAATCTAATGGCATTGTTTATGCCATTATTTACGTCAACCTACCAACAACAACAACTCATTCCCAAGTGATGCAAGGCGTTCAAGTGTGGAGGATGCAAAAGAAAAACTCATGGATCAGAGAATTTGAGATCAGAAAATTTGTTATGAATGGCATGCCAGGCTCAATTATCCTTATCAAAGCGGAAGAGGTTTTGTGTAAGTTTGGTGGATCCAGTTTTTGCTGGTATAATGCTTCCACAAGGACGAAGAAGATGATTAGGAAGACTAAAAGTAAGTGCTTAGTGGGCATTTGTCAAATAGAAACCTTGAATTTTGGCTTACTTCGAAACATTTTAGCTGGTGATGGGAAGGAGAACCGTTATAATTCTAATTAG

Protein sequence

MDGVIYFVGKVKNKPNDYAIYALDVETEKIELSAVLKAGRGPSSSRSRILQSNGIVYAIIYVNLPTTTTHSQVMQGVQVWRMQKKNSWIREFEIRKFVMNGMPGSIILIKAEEVLCKFGGSSFCWYNASTRTKKMIRKTKSKCLVGICQIETLNFGLLRNILAGDGKENRYNSN*
Homology
BLAST of CsGy1G016685 vs. NCBI nr
Match: XP_031742187.1 (F-box protein At3g07870-like [Cucumis sativus])

HSP 1 Score: 352 bits (904), Expect = 3.00e-119
Identity = 173/174 (99.43%), Postives = 174/174 (100.00%), Query Frame = 0

Query: 1   MDGVIYFVGKVKNKPNDYAIYALDVETEKIELSAVLKAGRGPSSSRSRILQSNGIVYAII 60
           MDGV+YFVGKVKNKPNDYAIYALDVETEKIELSAVLKAGRGPSSSRSRILQSNGIVYAII
Sbjct: 222 MDGVVYFVGKVKNKPNDYAIYALDVETEKIELSAVLKAGRGPSSSRSRILQSNGIVYAII 281

Query: 61  YVNLPTTTTHSQVMQGVQVWRMQKKNSWIREFEIRKFVMNGMPGSIILIKAEEVLCKFGG 120
           YVNLPTTTTHSQVMQGVQVWRMQKKNSWIREFEIRKFVMNGMPGSIILIKAEEVLCKFGG
Sbjct: 282 YVNLPTTTTHSQVMQGVQVWRMQKKNSWIREFEIRKFVMNGMPGSIILIKAEEVLCKFGG 341

Query: 121 SSFCWYNASTRTKKMIRKTKSKCLVGICQIETLNFGLLRNILAGDGKENRYNSN 174
           SSFCWYNASTRTKKMIRKTKSKCLVGICQIETLNFGLLRNILAGDGKENRYNSN
Sbjct: 342 SSFCWYNASTRTKKMIRKTKSKCLVGICQIETLNFGLLRNILAGDGKENRYNSN 395

BLAST of CsGy1G016685 vs. NCBI nr
Match: KAE8652961.1 (hypothetical protein Csa_017749 [Cucumis sativus])

HSP 1 Score: 352 bits (904), Expect = 3.31e-119
Identity = 173/174 (99.43%), Postives = 174/174 (100.00%), Query Frame = 0

Query: 1   MDGVIYFVGKVKNKPNDYAIYALDVETEKIELSAVLKAGRGPSSSRSRILQSNGIVYAII 60
           MDGV+YFVGKVKNKPNDYAIYALDVETEKIELSAVLKAGRGPSSSRSRILQSNGIVYAII
Sbjct: 225 MDGVVYFVGKVKNKPNDYAIYALDVETEKIELSAVLKAGRGPSSSRSRILQSNGIVYAII 284

Query: 61  YVNLPTTTTHSQVMQGVQVWRMQKKNSWIREFEIRKFVMNGMPGSIILIKAEEVLCKFGG 120
           YVNLPTTTTHSQVMQGVQVWRMQKKNSWIREFEIRKFVMNGMPGSIILIKAEEVLCKFGG
Sbjct: 285 YVNLPTTTTHSQVMQGVQVWRMQKKNSWIREFEIRKFVMNGMPGSIILIKAEEVLCKFGG 344

Query: 121 SSFCWYNASTRTKKMIRKTKSKCLVGICQIETLNFGLLRNILAGDGKENRYNSN 174
           SSFCWYNASTRTKKMIRKTKSKCLVGICQIETLNFGLLRNILAGDGKENRYNSN
Sbjct: 345 SSFCWYNASTRTKKMIRKTKSKCLVGICQIETLNFGLLRNILAGDGKENRYNSN 398

BLAST of CsGy1G016685 vs. NCBI nr
Match: XP_031742288.1 (F-box protein At3g07870-like [Cucumis sativus])

HSP 1 Score: 351 bits (901), Expect = 8.56e-119
Identity = 173/174 (99.43%), Postives = 174/174 (100.00%), Query Frame = 0

Query: 1   MDGVIYFVGKVKNKPNDYAIYALDVETEKIELSAVLKAGRGPSSSRSRILQSNGIVYAII 60
           MDGVIYFVGKVKNKPNDYAIYALDVETEKIELSAVLKAGRGPSSSRSRILQSNGIVYAII
Sbjct: 222 MDGVIYFVGKVKNKPNDYAIYALDVETEKIELSAVLKAGRGPSSSRSRILQSNGIVYAII 281

Query: 61  YVNLPTTTTHSQVMQGVQVWRMQKKNSWIREFEIRKFVMNGMPGSIILIKAEEVLCKFGG 120
           YVNLPTTTTHSQVMQGVQVWRMQKKNSWIREFEIRKFVMNGMPGSIILIKAEEVLCKFGG
Sbjct: 282 YVNLPTTTTHSQVMQGVQVWRMQKKNSWIREFEIRKFVMNGMPGSIILIKAEEVLCKFGG 341

Query: 121 SSFCWYNASTRTKKMIRKTKSKCLVGICQIETLNFGLLRNILAGDGKENRYNSN 174
           SSFCWYNASTRTKKMIRKTKSKCLVGICQIETLNFGLL+NILAGDGKENRYNSN
Sbjct: 342 SSFCWYNASTRTKKMIRKTKSKCLVGICQIETLNFGLLQNILAGDGKENRYNSN 395

BLAST of CsGy1G016685 vs. NCBI nr
Match: KAE8653053.1 (hypothetical protein Csa_019635 [Cucumis sativus])

HSP 1 Score: 351 bits (901), Expect = 9.44e-119
Identity = 173/174 (99.43%), Postives = 174/174 (100.00%), Query Frame = 0

Query: 1   MDGVIYFVGKVKNKPNDYAIYALDVETEKIELSAVLKAGRGPSSSRSRILQSNGIVYAII 60
           MDGVIYFVGKVKNKPNDYAIYALDVETEKIELSAVLKAGRGPSSSRSRILQSNGIVYAII
Sbjct: 225 MDGVIYFVGKVKNKPNDYAIYALDVETEKIELSAVLKAGRGPSSSRSRILQSNGIVYAII 284

Query: 61  YVNLPTTTTHSQVMQGVQVWRMQKKNSWIREFEIRKFVMNGMPGSIILIKAEEVLCKFGG 120
           YVNLPTTTTHSQVMQGVQVWRMQKKNSWIREFEIRKFVMNGMPGSIILIKAEEVLCKFGG
Sbjct: 285 YVNLPTTTTHSQVMQGVQVWRMQKKNSWIREFEIRKFVMNGMPGSIILIKAEEVLCKFGG 344

Query: 121 SSFCWYNASTRTKKMIRKTKSKCLVGICQIETLNFGLLRNILAGDGKENRYNSN 174
           SSFCWYNASTRTKKMIRKTKSKCLVGICQIETLNFGLL+NILAGDGKENRYNSN
Sbjct: 345 SSFCWYNASTRTKKMIRKTKSKCLVGICQIETLNFGLLQNILAGDGKENRYNSN 398

BLAST of CsGy1G016685 vs. NCBI nr
Match: XP_031742179.1 (F-box protein At3g07870-like [Cucumis sativus])

HSP 1 Score: 141 bits (355), Expect = 3.02e-37
Identity = 88/171 (51.46%), Postives = 100/171 (58.48%), Query Frame = 0

Query: 1   MDGVIYFVGKVKNKPNDYAIYALDVETEKIELSAVLKAGRGP-SSSRSRILQSNGIVYAI 60
           MDGVIYF+ KVKNKPNDYAIYALDVETE+IELSA+L+ G G  SSSRS+ILQS G VY I
Sbjct: 213 MDGVIYFLVKVKNKPNDYAIYALDVETEEIELSAILEVGPGLISSSRSQILQSYGNVYVI 272

Query: 61  IYVNLPTTTTHSQVMQGVQVWRMQKKNSWIREFEIRKFVMNGMPGSIILIKAEEVLCKFG 120
           I++ LPTTT  S     VQVWRMQ+K                                  
Sbjct: 273 IFIKLPTTTNSS-----VQVWRMQEKT--------------------------------- 327

Query: 121 GSSFCWYNASTRTKKMIRKTKSKCLVGICQIETLNFGLLRNILAGDGKENR 170
                             +T+ KCL+GICQIETLNFGLLRNILA D KEN+
Sbjct: 333 ------------------QTQRKCLMGICQIETLNFGLLRNILACDEKENQ 327

BLAST of CsGy1G016685 vs. ExPASy TrEMBL
Match: A0A0A0LYU1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G255670 PE=4 SV=1)

HSP 1 Score: 141 bits (355), Expect = 5.27e-39
Identity = 88/171 (51.46%), Postives = 100/171 (58.48%), Query Frame = 0

Query: 1   MDGVIYFVGKVKNKPNDYAIYALDVETEKIELSAVLKAGRGP-SSSRSRILQSNGIVYAI 60
           MDGVIYF+ KVKNKPNDYAIYALDVETE+IELSA+L+ G G  SSSRS+ILQS G VY I
Sbjct: 82  MDGVIYFLVKVKNKPNDYAIYALDVETEEIELSAILEVGPGLISSSRSQILQSYGNVYVI 141

Query: 61  IYVNLPTTTTHSQVMQGVQVWRMQKKNSWIREFEIRKFVMNGMPGSIILIKAEEVLCKFG 120
           I++ LPTTT  S     VQVWRMQ+K                                  
Sbjct: 142 IFIKLPTTTNSS-----VQVWRMQEKT--------------------------------- 196

Query: 121 GSSFCWYNASTRTKKMIRKTKSKCLVGICQIETLNFGLLRNILAGDGKENR 170
                             +T+ KCL+GICQIETLNFGLLRNILA D KEN+
Sbjct: 202 ------------------QTQRKCLMGICQIETLNFGLLRNILACDEKENQ 196

BLAST of CsGy1G016685 vs. ExPASy TrEMBL
Match: A0A5A7TE00 (F-box protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G003130 PE=4 SV=1)

HSP 1 Score: 136 bits (342), Expect = 3.45e-35
Identity = 79/168 (47.02%), Postives = 107/168 (63.69%), Query Frame = 0

Query: 1   MDGVIYFVGKVKNKPNDYAIYALDVETEKIELSAVLKAGRGPSSSRSRILQSNGIVYAII 60
           ++GVIY++G  ++K N+Y IYA++VETE IELS +L  G   +SS + + Q N  VYA  
Sbjct: 224 LNGVIYWIGTKEDKENEYIIYAVNVETELIELSFILDLGPCSTSSHASLKQFNSSVYATF 283

Query: 61  YVNLPTTTTHSQVMQGVQVWRMQKKNSWIREFEIRKFVMNGMPGSIILIKA---EEVLCK 120
           ++N P T   S     +QVWRMQ+K+ WIREF I    +N    S+ LIKA    E+LC 
Sbjct: 284 FIN-PKTYNSS-----IQVWRMQEKDLWIREFVIVDIPINW--SSLTLIKAFEDGEILCM 343

Query: 121 FGGSSFCWYNASTRTKKMIRKTKSKCLVGICQIETLNFGLLRNILAGD 165
                FCWYN+ T  KK++ K + K    +CQIE LNFGLL+NILAG+
Sbjct: 344 INLDFFCWYNSFTGRKKIVTKNQKKDR-RVCQIEYLNFGLLQNILAGE 382

BLAST of CsGy1G016685 vs. ExPASy TrEMBL
Match: A0A5D3DMB7 (F-box protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G003140 PE=4 SV=1)

HSP 1 Score: 134 bits (337), Expect = 2.26e-34
Identity = 80/173 (46.24%), Postives = 107/173 (61.85%), Query Frame = 0

Query: 1   MDGVIYFVGKVKNKPNDYAIYALDVETEKIELSAVLKAGRGPSSSRSRIL--QSNGIVYA 60
           ++G IY++G+ + K N+Y IYAL+VETE+IELSAVL  G   +SS   +   Q NG VYA
Sbjct: 230 LNGFIYWMGRKQYKENEYTIYALNVETEQIELSAVLHLGPFSTSSIPGVSLKQFNGSVYA 289

Query: 61  IIYVNLPTTTTHSQVMQGVQVWRMQKKNSWIREFEIRKFVMNGMPGSIILIKA---EEVL 120
             Y++  T  +       +QVWRMQ+K+ WI+EF I     N    S+ LIKA    E+L
Sbjct: 290 TFYIDPKTCNS------VIQVWRMQEKDLWIKEFVIDDIPNNWC--SLTLIKAFEDGEIL 349

Query: 121 CKFGGSSFCWYNASTRTKKMIRKTKSKCLVGICQIETLNFGLLRNILAGDGKE 168
           C      FCWYN+ T  KK++ K + KC   +C+IE LNFGLL NILAG+  E
Sbjct: 350 CMVNLDFFCWYNSFTGRKKIVTKNQKKCRY-VCEIEYLNFGLLPNILAGEESE 393

BLAST of CsGy1G016685 vs. ExPASy TrEMBL
Match: A0A5A7TCF3 (F-box protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold122G00060 PE=4 SV=1)

HSP 1 Score: 133 bits (335), Expect = 4.07e-34
Identity = 80/173 (46.24%), Postives = 107/173 (61.85%), Query Frame = 0

Query: 1   MDGVIYFVGKVKNKPNDYAIYALDVETEKIELSAVLKAGRGPSSSRSRIL--QSNGIVYA 60
           ++G IY++G+ + K N+Y IYAL+VETE+IELSAVL  G   +SS   +   Q NG VYA
Sbjct: 225 LNGFIYWMGRKQYKENEYTIYALNVETEQIELSAVLHLGPFSTSSIPGVSLKQFNGSVYA 284

Query: 61  IIYVNLPTTTTHSQVMQGVQVWRMQKKNSWIREFEIRKFVMNGMPGSIILIKA---EEVL 120
             Y++  T  +       +QVWRMQ+K+ WI+EF I     N    S+ LIKA    E+L
Sbjct: 285 TFYIDPKTCNS------VIQVWRMQEKDLWIKEFVIDDIPNNWC--SLTLIKAFEDGEIL 344

Query: 121 CKFGGSSFCWYNASTRTKKMIRKTKSKCLVGICQIETLNFGLLRNILAGDGKE 168
           C      FCWYN+ T  KK++ K + KC   +C+IE LNFGLL NILAG+  E
Sbjct: 345 CMVNLDFFCWYNSFTGRKKIVTKNQKKCRY-VCEIEYLNFGLLPNILAGEELE 388

BLAST of CsGy1G016685 vs. ExPASy TrEMBL
Match: A0A0A0LWG1 (F-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G257290 PE=4 SV=1)

HSP 1 Score: 113 bits (283), Expect = 1.81e-26
Identity = 67/167 (40.12%), Postives = 100/167 (59.88%), Query Frame = 0

Query: 1   MDGVIYFVGKVKNKPND--YAIYALDVETEKIELSAVLKAGRGPSSSRSRILQSNGIVYA 60
           ++G+IY++ K K K  +  Y IYALDVETE IE++ VL+    PS+   +I Q NG +YA
Sbjct: 249 LNGIIYWLVKEKGKDKEKKYVIYALDVETEHIEMTVVLQV---PSNGYGKIHQFNGTIYA 308

Query: 61  IIYVNLPTTTTHSQVMQGVQVWRMQKKNSWIREFEIRKFVMNGMPGSII-LIKAEEVLCK 120
             ++N    +      + +QVWRMQ+K+SW+R+F I       +   +I + + EE+L  
Sbjct: 309 TFHINWEKDS------RTIQVWRMQEKDSWVRKFVICDISREWIHLQLIKMFEDEEILFM 368

Query: 121 FGGSSFCWYNASTRTKKMIRKTKSKCLVGICQIETLNFGLLRNILAG 164
                FC+YN S++ K++I K + K    ICQIE+LNFG L  IL G
Sbjct: 369 INMDFFCFYNPSSKKKRIISKNQKKKRY-ICQIESLNFGRLSQILEG 405

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
XP_031742187.13.00e-11999.43F-box protein At3g07870-like [Cucumis sativus][more]
KAE8652961.13.31e-11999.43hypothetical protein Csa_017749 [Cucumis sativus][more]
XP_031742288.18.56e-11999.43F-box protein At3g07870-like [Cucumis sativus][more]
KAE8653053.19.44e-11999.43hypothetical protein Csa_019635 [Cucumis sativus][more]
XP_031742179.13.02e-3751.46F-box protein At3g07870-like [Cucumis sativus][more]
Match NameE-valueIdentityDescription
A0A0A0LYU15.27e-3951.46Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G255670 PE=4 SV=1[more]
A0A5A7TE003.45e-3547.02F-box protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G003130... [more]
A0A5D3DMB72.26e-3446.24F-box protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G003140... [more]
A0A5A7TCF34.07e-3446.24F-box protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold122G00060 ... [more]
A0A0A0LWG11.81e-2640.12F-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G257290 PE=4 ... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy1G016685.1CsGy1G016685.1mRNA