Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TAGAAACAAATGGAGGCAACTTCATTCCCTACCTTATCTCATTGACGATGGTGGTATTTACATGGATGGAGTCATCTATTTTGTGGGAAAAGTAAAAAATAAACCAAATGACTATGCCATCTATGCTCTCGATGTTGAAACTGAAAAAATTGAATTGAGTGCTGTCTTGAAAGCTGGACGTGGCCCAAGCTCTTCCCGCTCGCGAATACTACAATCTAATGGCATTGTTTATGCCATTATTTACGTCAACCTACCAACAACAACAACTCATTCCCAAGTGATGCAAGGCGTTCAAGTGTGGAGGATGCAAAAGAAAAACTCATGGATCAGAGAATTTGAGATCAGAAAATTTGTTATGAATGGCATGCCAGGCTCAATTATCCTTATCAAAGCGGAAGAGGTTTTGTGTAAGTTTGGTGGATCCAGTTTTTGCTGGTATAATGCTTCCACAAGGACGAAGAAGATGATTAGGAAGACTAAAAGTAAGTGCTTAGTGGGCATTTGTCAAATAGAAACCTTGAATTTTGGCTTACTTCGAAACATTTTAGCTGGTGATGGGAAGGAGAACCGTTATAATTCTAATTAGAAGCAAAAGGAGAACGATGAAAAGCAGAAGGCAGGTTAGGTTGAAGATTATGGTTCGCTTTTGTTTTTTCACACACCATGTAATCAACAGTTAGTTTTTTTTCCGCATGCACCATGTAATCAGAACGCCAAATTTGATTGGAATTAGAACATATAATTGTAGGATGTGTTTCTAAATATAAATAGGTTATGAT
mRNA sequence
TAGAAACAAATGGAGGCAACTTCATTCCCTACCTTATCTCATTGACGATGGTGGTATTTACATGGATGGAGTCATCTATTTTGTGGGAAAAGTAAAAAATAAACCAAATGACTATGCCATCTATGCTCTCGATGTTGAAACTGAAAAAATTGAATTGAGTGCTGTCTTGAAAGCTGGACGTGGCCCAAGCTCTTCCCGCTCGCGAATACTACAATCTAATGGCATTGTTTATGCCATTATTTACGTCAACCTACCAACAACAACAACTCATTCCCAAGTGATGCAAGGCGTTCAAGTGTGGAGGATGCAAAAGAAAAACTCATGGATCAGAGAATTTGAGATCAGAAAATTTGTTATGAATGGCATGCCAGGCTCAATTATCCTTATCAAAGCGGAAGAGGTTTTGTGTAAGTTTGGTGGATCCAGTTTTTGCTGGTATAATGCTTCCACAAGGACGAAGAAGATGATTAGGAAGACTAAAAGTAAGTGCTTAGTGGGCATTTGTCAAATAGAAACCTTGAATTTTGGCTTACTTCGAAACATTTTAGCTGGTGATGGGAAGGAGAACCGTTATAATTCTAATTAGAAGCAAAAGGAGAACGATGAAAAGCAGAAGGCAGGTTAGGTTGAAGATTATGGTTCGCTTTTGTTTTTTCACACACCATGTAATCAACAGTTAGTTTTTTTTCCGCATGCACCATGTAATCAGAACGCCAAATTTGATTGGAATTAGAACATATAATTGTAGGATGTGTTTCTAAATATAAATAGGTTATGAT
Coding sequence (CDS)
ATGGATGGAGTCATCTATTTTGTGGGAAAAGTAAAAAATAAACCAAATGACTATGCCATCTATGCTCTCGATGTTGAAACTGAAAAAATTGAATTGAGTGCTGTCTTGAAAGCTGGACGTGGCCCAAGCTCTTCCCGCTCGCGAATACTACAATCTAATGGCATTGTTTATGCCATTATTTACGTCAACCTACCAACAACAACAACTCATTCCCAAGTGATGCAAGGCGTTCAAGTGTGGAGGATGCAAAAGAAAAACTCATGGATCAGAGAATTTGAGATCAGAAAATTTGTTATGAATGGCATGCCAGGCTCAATTATCCTTATCAAAGCGGAAGAGGTTTTGTGTAAGTTTGGTGGATCCAGTTTTTGCTGGTATAATGCTTCCACAAGGACGAAGAAGATGATTAGGAAGACTAAAAGTAAGTGCTTAGTGGGCATTTGTCAAATAGAAACCTTGAATTTTGGCTTACTTCGAAACATTTTAGCTGGTGATGGGAAGGAGAACCGTTATAATTCTAATTAG
Protein sequence
MDGVIYFVGKVKNKPNDYAIYALDVETEKIELSAVLKAGRGPSSSRSRILQSNGIVYAIIYVNLPTTTTHSQVMQGVQVWRMQKKNSWIREFEIRKFVMNGMPGSIILIKAEEVLCKFGGSSFCWYNASTRTKKMIRKTKSKCLVGICQIETLNFGLLRNILAGDGKENRYNSN*
Homology
BLAST of CsGy1G016685 vs. NCBI nr
Match:
XP_031742187.1 (F-box protein At3g07870-like [Cucumis sativus])
HSP 1 Score: 352 bits (904), Expect = 3.00e-119
Identity = 173/174 (99.43%), Postives = 174/174 (100.00%), Query Frame = 0
Query: 1 MDGVIYFVGKVKNKPNDYAIYALDVETEKIELSAVLKAGRGPSSSRSRILQSNGIVYAII 60
MDGV+YFVGKVKNKPNDYAIYALDVETEKIELSAVLKAGRGPSSSRSRILQSNGIVYAII
Sbjct: 222 MDGVVYFVGKVKNKPNDYAIYALDVETEKIELSAVLKAGRGPSSSRSRILQSNGIVYAII 281
Query: 61 YVNLPTTTTHSQVMQGVQVWRMQKKNSWIREFEIRKFVMNGMPGSIILIKAEEVLCKFGG 120
YVNLPTTTTHSQVMQGVQVWRMQKKNSWIREFEIRKFVMNGMPGSIILIKAEEVLCKFGG
Sbjct: 282 YVNLPTTTTHSQVMQGVQVWRMQKKNSWIREFEIRKFVMNGMPGSIILIKAEEVLCKFGG 341
Query: 121 SSFCWYNASTRTKKMIRKTKSKCLVGICQIETLNFGLLRNILAGDGKENRYNSN 174
SSFCWYNASTRTKKMIRKTKSKCLVGICQIETLNFGLLRNILAGDGKENRYNSN
Sbjct: 342 SSFCWYNASTRTKKMIRKTKSKCLVGICQIETLNFGLLRNILAGDGKENRYNSN 395
BLAST of CsGy1G016685 vs. NCBI nr
Match:
KAE8652961.1 (hypothetical protein Csa_017749 [Cucumis sativus])
HSP 1 Score: 352 bits (904), Expect = 3.31e-119
Identity = 173/174 (99.43%), Postives = 174/174 (100.00%), Query Frame = 0
Query: 1 MDGVIYFVGKVKNKPNDYAIYALDVETEKIELSAVLKAGRGPSSSRSRILQSNGIVYAII 60
MDGV+YFVGKVKNKPNDYAIYALDVETEKIELSAVLKAGRGPSSSRSRILQSNGIVYAII
Sbjct: 225 MDGVVYFVGKVKNKPNDYAIYALDVETEKIELSAVLKAGRGPSSSRSRILQSNGIVYAII 284
Query: 61 YVNLPTTTTHSQVMQGVQVWRMQKKNSWIREFEIRKFVMNGMPGSIILIKAEEVLCKFGG 120
YVNLPTTTTHSQVMQGVQVWRMQKKNSWIREFEIRKFVMNGMPGSIILIKAEEVLCKFGG
Sbjct: 285 YVNLPTTTTHSQVMQGVQVWRMQKKNSWIREFEIRKFVMNGMPGSIILIKAEEVLCKFGG 344
Query: 121 SSFCWYNASTRTKKMIRKTKSKCLVGICQIETLNFGLLRNILAGDGKENRYNSN 174
SSFCWYNASTRTKKMIRKTKSKCLVGICQIETLNFGLLRNILAGDGKENRYNSN
Sbjct: 345 SSFCWYNASTRTKKMIRKTKSKCLVGICQIETLNFGLLRNILAGDGKENRYNSN 398
BLAST of CsGy1G016685 vs. NCBI nr
Match:
XP_031742288.1 (F-box protein At3g07870-like [Cucumis sativus])
HSP 1 Score: 351 bits (901), Expect = 8.56e-119
Identity = 173/174 (99.43%), Postives = 174/174 (100.00%), Query Frame = 0
Query: 1 MDGVIYFVGKVKNKPNDYAIYALDVETEKIELSAVLKAGRGPSSSRSRILQSNGIVYAII 60
MDGVIYFVGKVKNKPNDYAIYALDVETEKIELSAVLKAGRGPSSSRSRILQSNGIVYAII
Sbjct: 222 MDGVIYFVGKVKNKPNDYAIYALDVETEKIELSAVLKAGRGPSSSRSRILQSNGIVYAII 281
Query: 61 YVNLPTTTTHSQVMQGVQVWRMQKKNSWIREFEIRKFVMNGMPGSIILIKAEEVLCKFGG 120
YVNLPTTTTHSQVMQGVQVWRMQKKNSWIREFEIRKFVMNGMPGSIILIKAEEVLCKFGG
Sbjct: 282 YVNLPTTTTHSQVMQGVQVWRMQKKNSWIREFEIRKFVMNGMPGSIILIKAEEVLCKFGG 341
Query: 121 SSFCWYNASTRTKKMIRKTKSKCLVGICQIETLNFGLLRNILAGDGKENRYNSN 174
SSFCWYNASTRTKKMIRKTKSKCLVGICQIETLNFGLL+NILAGDGKENRYNSN
Sbjct: 342 SSFCWYNASTRTKKMIRKTKSKCLVGICQIETLNFGLLQNILAGDGKENRYNSN 395
BLAST of CsGy1G016685 vs. NCBI nr
Match:
KAE8653053.1 (hypothetical protein Csa_019635 [Cucumis sativus])
HSP 1 Score: 351 bits (901), Expect = 9.44e-119
Identity = 173/174 (99.43%), Postives = 174/174 (100.00%), Query Frame = 0
Query: 1 MDGVIYFVGKVKNKPNDYAIYALDVETEKIELSAVLKAGRGPSSSRSRILQSNGIVYAII 60
MDGVIYFVGKVKNKPNDYAIYALDVETEKIELSAVLKAGRGPSSSRSRILQSNGIVYAII
Sbjct: 225 MDGVIYFVGKVKNKPNDYAIYALDVETEKIELSAVLKAGRGPSSSRSRILQSNGIVYAII 284
Query: 61 YVNLPTTTTHSQVMQGVQVWRMQKKNSWIREFEIRKFVMNGMPGSIILIKAEEVLCKFGG 120
YVNLPTTTTHSQVMQGVQVWRMQKKNSWIREFEIRKFVMNGMPGSIILIKAEEVLCKFGG
Sbjct: 285 YVNLPTTTTHSQVMQGVQVWRMQKKNSWIREFEIRKFVMNGMPGSIILIKAEEVLCKFGG 344
Query: 121 SSFCWYNASTRTKKMIRKTKSKCLVGICQIETLNFGLLRNILAGDGKENRYNSN 174
SSFCWYNASTRTKKMIRKTKSKCLVGICQIETLNFGLL+NILAGDGKENRYNSN
Sbjct: 345 SSFCWYNASTRTKKMIRKTKSKCLVGICQIETLNFGLLQNILAGDGKENRYNSN 398
BLAST of CsGy1G016685 vs. NCBI nr
Match:
XP_031742179.1 (F-box protein At3g07870-like [Cucumis sativus])
HSP 1 Score: 141 bits (355), Expect = 3.02e-37
Identity = 88/171 (51.46%), Postives = 100/171 (58.48%), Query Frame = 0
Query: 1 MDGVIYFVGKVKNKPNDYAIYALDVETEKIELSAVLKAGRGP-SSSRSRILQSNGIVYAI 60
MDGVIYF+ KVKNKPNDYAIYALDVETE+IELSA+L+ G G SSSRS+ILQS G VY I
Sbjct: 213 MDGVIYFLVKVKNKPNDYAIYALDVETEEIELSAILEVGPGLISSSRSQILQSYGNVYVI 272
Query: 61 IYVNLPTTTTHSQVMQGVQVWRMQKKNSWIREFEIRKFVMNGMPGSIILIKAEEVLCKFG 120
I++ LPTTT S VQVWRMQ+K
Sbjct: 273 IFIKLPTTTNSS-----VQVWRMQEKT--------------------------------- 327
Query: 121 GSSFCWYNASTRTKKMIRKTKSKCLVGICQIETLNFGLLRNILAGDGKENR 170
+T+ KCL+GICQIETLNFGLLRNILA D KEN+
Sbjct: 333 ------------------QTQRKCLMGICQIETLNFGLLRNILACDEKENQ 327
BLAST of CsGy1G016685 vs. ExPASy TrEMBL
Match:
A0A0A0LYU1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G255670 PE=4 SV=1)
HSP 1 Score: 141 bits (355), Expect = 5.27e-39
Identity = 88/171 (51.46%), Postives = 100/171 (58.48%), Query Frame = 0
Query: 1 MDGVIYFVGKVKNKPNDYAIYALDVETEKIELSAVLKAGRGP-SSSRSRILQSNGIVYAI 60
MDGVIYF+ KVKNKPNDYAIYALDVETE+IELSA+L+ G G SSSRS+ILQS G VY I
Sbjct: 82 MDGVIYFLVKVKNKPNDYAIYALDVETEEIELSAILEVGPGLISSSRSQILQSYGNVYVI 141
Query: 61 IYVNLPTTTTHSQVMQGVQVWRMQKKNSWIREFEIRKFVMNGMPGSIILIKAEEVLCKFG 120
I++ LPTTT S VQVWRMQ+K
Sbjct: 142 IFIKLPTTTNSS-----VQVWRMQEKT--------------------------------- 196
Query: 121 GSSFCWYNASTRTKKMIRKTKSKCLVGICQIETLNFGLLRNILAGDGKENR 170
+T+ KCL+GICQIETLNFGLLRNILA D KEN+
Sbjct: 202 ------------------QTQRKCLMGICQIETLNFGLLRNILACDEKENQ 196
BLAST of CsGy1G016685 vs. ExPASy TrEMBL
Match:
A0A5A7TE00 (F-box protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G003130 PE=4 SV=1)
HSP 1 Score: 136 bits (342), Expect = 3.45e-35
Identity = 79/168 (47.02%), Postives = 107/168 (63.69%), Query Frame = 0
Query: 1 MDGVIYFVGKVKNKPNDYAIYALDVETEKIELSAVLKAGRGPSSSRSRILQSNGIVYAII 60
++GVIY++G ++K N+Y IYA++VETE IELS +L G +SS + + Q N VYA
Sbjct: 224 LNGVIYWIGTKEDKENEYIIYAVNVETELIELSFILDLGPCSTSSHASLKQFNSSVYATF 283
Query: 61 YVNLPTTTTHSQVMQGVQVWRMQKKNSWIREFEIRKFVMNGMPGSIILIKA---EEVLCK 120
++N P T S +QVWRMQ+K+ WIREF I +N S+ LIKA E+LC
Sbjct: 284 FIN-PKTYNSS-----IQVWRMQEKDLWIREFVIVDIPINW--SSLTLIKAFEDGEILCM 343
Query: 121 FGGSSFCWYNASTRTKKMIRKTKSKCLVGICQIETLNFGLLRNILAGD 165
FCWYN+ T KK++ K + K +CQIE LNFGLL+NILAG+
Sbjct: 344 INLDFFCWYNSFTGRKKIVTKNQKKDR-RVCQIEYLNFGLLQNILAGE 382
BLAST of CsGy1G016685 vs. ExPASy TrEMBL
Match:
A0A5D3DMB7 (F-box protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G003140 PE=4 SV=1)
HSP 1 Score: 134 bits (337), Expect = 2.26e-34
Identity = 80/173 (46.24%), Postives = 107/173 (61.85%), Query Frame = 0
Query: 1 MDGVIYFVGKVKNKPNDYAIYALDVETEKIELSAVLKAGRGPSSSRSRIL--QSNGIVYA 60
++G IY++G+ + K N+Y IYAL+VETE+IELSAVL G +SS + Q NG VYA
Sbjct: 230 LNGFIYWMGRKQYKENEYTIYALNVETEQIELSAVLHLGPFSTSSIPGVSLKQFNGSVYA 289
Query: 61 IIYVNLPTTTTHSQVMQGVQVWRMQKKNSWIREFEIRKFVMNGMPGSIILIKA---EEVL 120
Y++ T + +QVWRMQ+K+ WI+EF I N S+ LIKA E+L
Sbjct: 290 TFYIDPKTCNS------VIQVWRMQEKDLWIKEFVIDDIPNNWC--SLTLIKAFEDGEIL 349
Query: 121 CKFGGSSFCWYNASTRTKKMIRKTKSKCLVGICQIETLNFGLLRNILAGDGKE 168
C FCWYN+ T KK++ K + KC +C+IE LNFGLL NILAG+ E
Sbjct: 350 CMVNLDFFCWYNSFTGRKKIVTKNQKKCRY-VCEIEYLNFGLLPNILAGEESE 393
BLAST of CsGy1G016685 vs. ExPASy TrEMBL
Match:
A0A5A7TCF3 (F-box protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold122G00060 PE=4 SV=1)
HSP 1 Score: 133 bits (335), Expect = 4.07e-34
Identity = 80/173 (46.24%), Postives = 107/173 (61.85%), Query Frame = 0
Query: 1 MDGVIYFVGKVKNKPNDYAIYALDVETEKIELSAVLKAGRGPSSSRSRIL--QSNGIVYA 60
++G IY++G+ + K N+Y IYAL+VETE+IELSAVL G +SS + Q NG VYA
Sbjct: 225 LNGFIYWMGRKQYKENEYTIYALNVETEQIELSAVLHLGPFSTSSIPGVSLKQFNGSVYA 284
Query: 61 IIYVNLPTTTTHSQVMQGVQVWRMQKKNSWIREFEIRKFVMNGMPGSIILIKA---EEVL 120
Y++ T + +QVWRMQ+K+ WI+EF I N S+ LIKA E+L
Sbjct: 285 TFYIDPKTCNS------VIQVWRMQEKDLWIKEFVIDDIPNNWC--SLTLIKAFEDGEIL 344
Query: 121 CKFGGSSFCWYNASTRTKKMIRKTKSKCLVGICQIETLNFGLLRNILAGDGKE 168
C FCWYN+ T KK++ K + KC +C+IE LNFGLL NILAG+ E
Sbjct: 345 CMVNLDFFCWYNSFTGRKKIVTKNQKKCRY-VCEIEYLNFGLLPNILAGEELE 388
BLAST of CsGy1G016685 vs. ExPASy TrEMBL
Match:
A0A0A0LWG1 (F-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G257290 PE=4 SV=1)
HSP 1 Score: 113 bits (283), Expect = 1.81e-26
Identity = 67/167 (40.12%), Postives = 100/167 (59.88%), Query Frame = 0
Query: 1 MDGVIYFVGKVKNKPND--YAIYALDVETEKIELSAVLKAGRGPSSSRSRILQSNGIVYA 60
++G+IY++ K K K + Y IYALDVETE IE++ VL+ PS+ +I Q NG +YA
Sbjct: 249 LNGIIYWLVKEKGKDKEKKYVIYALDVETEHIEMTVVLQV---PSNGYGKIHQFNGTIYA 308
Query: 61 IIYVNLPTTTTHSQVMQGVQVWRMQKKNSWIREFEIRKFVMNGMPGSII-LIKAEEVLCK 120
++N + + +QVWRMQ+K+SW+R+F I + +I + + EE+L
Sbjct: 309 TFHINWEKDS------RTIQVWRMQEKDSWVRKFVICDISREWIHLQLIKMFEDEEILFM 368
Query: 121 FGGSSFCWYNASTRTKKMIRKTKSKCLVGICQIETLNFGLLRNILAG 164
FC+YN S++ K++I K + K ICQIE+LNFG L IL G
Sbjct: 369 INMDFFCFYNPSSKKKRIISKNQKKKRY-ICQIESLNFGRLSQILEG 405
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A0A0LYU1 | 5.27e-39 | 51.46 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G255670 PE=4 SV=1 | [more] |
A0A5A7TE00 | 3.45e-35 | 47.02 | F-box protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G003130... | [more] |
A0A5D3DMB7 | 2.26e-34 | 46.24 | F-box protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G003140... | [more] |
A0A5A7TCF3 | 4.07e-34 | 46.24 | F-box protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold122G00060 ... | [more] |
A0A0A0LWG1 | 1.81e-26 | 40.12 | F-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G257290 PE=4 ... | [more] |
Match Name | E-value | Identity | Description | |