CsGy1G016470 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy1G016470
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	TLD domain-containing protein 1
Location	Gy14Chr1: 13586762 .. 13587386 (+)
RNA-Seq Expression	CsGy1G016470
Synteny	CsGy1G016470

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTTGAAAGGCCTAGAAAGGATCATGTAGGACATGAGGAAGTAGAAACCTTTTATGGTACTGTTGGTGAATGCCTTAAGCACCTGGTTTTTGGTCAATCATTATGATTTATTTTTGTAACCCTTCTAATGACCCTAGTTTATGATTGTTGTTATTTTGTCATCATTTTCGTTTTAGGGCACTTATGAGAAAGGAACAAATGAAGAAATTGAAGAGTTCATTTATGAATTACTGGGTGTGTCAGATGATGGTGTCCTTGGAAGGTAATATCTTCTTCTTCTTTTAAATATTAACTTTCTATAAAGAAGGCTATCGGTTCTCCCACCCACCAAATCCCAAAAATATAGATTTCTGATTCAAAATTTGATTGGATGCGATTATATCTGCCTTCTTAGCTTTCATGGCAATGCCAGGTCTGATCTGGAATCGGTTCTAATAGCAATTTTCAATTATGTATTCCCCTCAACAAATAATGAACCTGGATTGGATTCACATAAGGATGTCATACAAATATTTGTTCGTGCAGCCACTTTCTTAGAGAACGATGAACAATTTACTTACGAAAATTTCAAAAACTGGTGTTCATTGCTTCCATCCGTCAGGAAGTTTCTTGGAAGTTTCTAA

mRNA sequence

ATGTTTGAAAGGCCTAGAAAGGATCATGTAGGACATGAGGAAGTAGAAACCTTTTATGGTACTGTTGGTGAATGCCTTAAGCACCTGGGCACTTATGAGAAAGGAACAAATGAAGAAATTGAAGAGTTCATTTATGAATTACTGGGTGTGTCAGATGATGGTGTCCTTGGAAGGTCTGATCTGGAATCGGTTCTAATAGCAATTTTCAATTATGTATTCCCCTCAACAAATAATGAACCTGGATTGGATTCACATAAGGATGTCATACAAATATTTGTTCGTGCAGCCACTTTCTTAGAGAACGATGAACAATTTACTTACGAAAATTTCAAAAACTGGTGTTCATTGCTTCCATCCGTCAGGAAGTTTCTTGGAAGTTTCTAA

Coding sequence (CDS)

ATGTTTGAAAGGCCTAGAAAGGATCATGTAGGACATGAGGAAGTAGAAACCTTTTATGGTACTGTTGGTGAATGCCTTAAGCACCTGGGCACTTATGAGAAAGGAACAAATGAAGAAATTGAAGAGTTCATTTATGAATTACTGGGTGTGTCAGATGATGGTGTCCTTGGAAGGTCTGATCTGGAATCGGTTCTAATAGCAATTTTCAATTATGTATTCCCCTCAACAAATAATGAACCTGGATTGGATTCACATAAGGATGTCATACAAATATTTGTTCGTGCAGCCACTTTCTTAGAGAACGATGAACAATTTACTTACGAAAATTTCAAAAACTGGTGTTCATTGCTTCCATCCGTCAGGAAGTTTCTTGGAAGTTTCTAA

Protein sequence

MFERPRKDHVGHEEVETFYGTVGECLKHLGTYEKGTNEEIEEFIYELLGVSDDGVLGRSDLESVLIAIFNYVFPSTNNEPGLDSHKDVIQIFVRAATFLENDEQFTYENFKNWCSLLPSVRKFLGSF*

Homology

[Close]

BLAST of CsGy1G016470 vs. NCBI nr
Match: KAE8652948.1 (hypothetical protein Csa_017773 [Cucumis sativus])

HSP 1 Score: 266 bits (680), Expect = 6.33e-90
Identity = 127/127 (100.00%), Postives = 127/127 (100.00%), Query Frame = 0


Query: 1   MFERPRKDHVGHEEVETFYGTVGECLKHLGTYEKGTNEEIEEFIYELLGVSDDGVLGRSD 60
           MFERPRKDHVGHEEVETFYGTVGECLKHLGTYEKGTNEEIEEFIYELLGVSDDGVLGRSD
Sbjct: 1   MFERPRKDHVGHEEVETFYGTVGECLKHLGTYEKGTNEEIEEFIYELLGVSDDGVLGRSD 60

Query: 61  LESVLIAIFNYVFPSTNNEPGLDSHKDVIQIFVRAATFLENDEQFTYENFKNWCSLLPSV 120
           LESVLIAIFNYVFPSTNNEPGLDSHKDVIQIFVRAATFLENDEQFTYENFKNWCSLLPSV
Sbjct: 61  LESVLIAIFNYVFPSTNNEPGLDSHKDVIQIFVRAATFLENDEQFTYENFKNWCSLLPSV 120

Query: 121 RKFLGSF 127
           RKFLGSF
Sbjct: 121 RKFLGSF 127

[Close]

BLAST of CsGy1G016470 vs. NCBI nr
Match: XP_031738219.1 (MTOR-associated protein MEAK7 isoform X2 [Cucumis sativus])

HSP 1 Score: 190 bits (483), Expect = 3.62e-57
Identity = 91/98 (92.86%), Postives = 95/98 (96.94%), Query Frame = 0


Query: 29  LGTYEKGTNEEIEEFIYELLGVSDDGVLGRSDLESVLIAIFNYVFPSTNNEPGLDSHKDV 88
           +GTYEKGTNE+IEEFIY+LLGVSDDGVLGRSDLESVLIAIFN VFPSTNNEPGLDSH+D 
Sbjct: 1   MGTYEKGTNEDIEEFIYQLLGVSDDGVLGRSDLESVLIAIFNSVFPSTNNEPGLDSHQDA 60

Query: 89  IQIFVRAATFLENDEQFTYENFKNWCSLLPSVRKFLGS 126
           IQIFVRAATF ENDEQFTYENFKNWCSLLPSVRKFLGS
Sbjct: 61  IQIFVRAATFSENDEQFTYENFKNWCSLLPSVRKFLGS 98

[Close]

BLAST of CsGy1G016470 vs. NCBI nr
Match: XP_004136702.3 (MTOR-associated protein MEAK7 isoform X1 [Cucumis sativus] >KAE8651100.1 hypothetical protein Csa_002526 [Cucumis sativus])

HSP 1 Score: 189 bits (481), Expect = 6.35e-56
Identity = 91/97 (93.81%), Postives = 94/97 (96.91%), Query Frame = 0


Query: 30  GTYEKGTNEEIEEFIYELLGVSDDGVLGRSDLESVLIAIFNYVFPSTNNEPGLDSHKDVI 89
           GTYEKGTNE+IEEFIY+LLGVSDDGVLGRSDLESVLIAIFN VFPSTNNEPGLDSH+D I
Sbjct: 88  GTYEKGTNEDIEEFIYQLLGVSDDGVLGRSDLESVLIAIFNSVFPSTNNEPGLDSHQDAI 147

Query: 90  QIFVRAATFLENDEQFTYENFKNWCSLLPSVRKFLGS 126
           QIFVRAATF ENDEQFTYENFKNWCSLLPSVRKFLGS
Sbjct: 148 QIFVRAATFSENDEQFTYENFKNWCSLLPSVRKFLGS 184

[Close]

BLAST of CsGy1G016470 vs. NCBI nr
Match: XP_008442885.1 (PREDICTED: TLD domain-containing protein 1 isoform X2 [Cucumis melo] >KAA0043840.1 TLD domain-containing protein 1 isoform X2 [Cucumis melo var. makuwa] >TYK25294.1 TLD domain-containing protein 1 isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 183 bits (464), Expect = 2.18e-53
Identity = 89/97 (91.75%), Postives = 92/97 (94.85%), Query Frame = 0


Query: 30  GTYEKGTNEEIEEFIYELLGVSDDGVLGRSDLESVLIAIFNYVFPSTNNEPGLDSHKDVI 89
           GT+EKGTNEEIEEFIY+LL VSDDGVLGRSDLESVLIAIFN VFPSTNNE GLDSH+D I
Sbjct: 88  GTFEKGTNEEIEEFIYQLLDVSDDGVLGRSDLESVLIAIFNSVFPSTNNEHGLDSHQDAI 147

Query: 90  QIFVRAATFLENDEQFTYENFKNWCSLLPSVRKFLGS 126
           QIFVRAATF ENDEQFTYENFKNWCSLLPSVRKFLGS
Sbjct: 148 QIFVRAATFSENDEQFTYENFKNWCSLLPSVRKFLGS 184

[Close]

BLAST of CsGy1G016470 vs. NCBI nr
Match: XP_008442884.1 (PREDICTED: TLD domain-containing protein 1 isoform X1 [Cucumis melo])

HSP 1 Score: 176 bits (447), Expect = 8.46e-51
Identity = 89/103 (86.41%), Postives = 92/103 (89.32%), Query Frame = 0


Query: 30  GTYEKGTNEEIEEFIYELLGVSDDGVLG------RSDLESVLIAIFNYVFPSTNNEPGLD 89
           GT+EKGTNEEIEEFIY+LL VSDDGVLG      RSDLESVLIAIFN VFPSTNNE GLD
Sbjct: 88  GTFEKGTNEEIEEFIYQLLDVSDDGVLGSFHANARSDLESVLIAIFNSVFPSTNNEHGLD 147

Query: 90  SHKDVIQIFVRAATFLENDEQFTYENFKNWCSLLPSVRKFLGS 126
           SH+D IQIFVRAATF ENDEQFTYENFKNWCSLLPSVRKFLGS
Sbjct: 148 SHQDAIQIFVRAATFSENDEQFTYENFKNWCSLLPSVRKFLGS 190

[Close]

BLAST of CsGy1G016470 vs. ExPASy TrEMBL
Match: A0A0A0LTN2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G240060 PE=4 SV=1)

HSP 1 Score: 258 bits (659), Expect = 5.99e-87
Identity = 126/133 (94.74%), Postives = 126/133 (94.74%), Query Frame = 0


Query: 1   MFERPRKDHVGHEEVETFYGTVGECLKHLGTYEKGTNEEIEEFIYELLGVSDDGVLG--- 60
           MFERPRKDHVGHEEVETFYGTVGECLKHLGTYEKGTNEEIEEFIYELLGVSDDGVLG   
Sbjct: 1   MFERPRKDHVGHEEVETFYGTVGECLKHLGTYEKGTNEEIEEFIYELLGVSDDGVLGSFH 60

Query: 61  ---RSDLESVLIAIFNYVFPSTNNEPGLDSHKDVIQIFVRAATFLENDEQFTYENFKNWC 120
              RSDLESVLIAIFNYVFPSTNNEPGLDSHKD IQIFVRAATFLENDEQFTYENFKNWC
Sbjct: 61  GNARSDLESVLIAIFNYVFPSTNNEPGLDSHKDAIQIFVRAATFLENDEQFTYENFKNWC 120

Query: 121 SLLPSVRKFLGSF 127
           SLLPSVRKFLGSF
Sbjct: 121 SLLPSVRKFLGSF 133

[Close]

BLAST of CsGy1G016470 vs. ExPASy TrEMBL
Match: A0A0A0LGR3 (TLDc domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G778320 PE=4 SV=1)

HSP 1 Score: 194 bits (494), Expect = 3.51e-58
Identity = 93/97 (95.88%), Postives = 95/97 (97.94%), Query Frame = 0


Query: 30  GTYEKGTNEEIEEFIYELLGVSDDGVLGRSDLESVLIAIFNYVFPSTNNEPGLDSHKDVI 89
           GTYEKGTNE+IEEFIY+LLGVSDDGVLGRSDLESVLIAIFNYVFPSTNNEPGLDSHKD I
Sbjct: 88  GTYEKGTNEDIEEFIYQLLGVSDDGVLGRSDLESVLIAIFNYVFPSTNNEPGLDSHKDAI 147

Query: 90  QIFVRAATFLENDEQFTYENFKNWCSLLPSVRKFLGS 126
           QIFVRAATF ENDEQFTYENFKNWCSLLPSVRKFLGS
Sbjct: 148 QIFVRAATFSENDEQFTYENFKNWCSLLPSVRKFLGS 184

[Close]

BLAST of CsGy1G016470 vs. ExPASy TrEMBL
Match: A0A5A7TKW7 (TLD domain-containing protein 1 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G004300 PE=4 SV=1)

HSP 1 Score: 183 bits (464), Expect = 1.06e-53
Identity = 89/97 (91.75%), Postives = 92/97 (94.85%), Query Frame = 0


Query: 30  GTYEKGTNEEIEEFIYELLGVSDDGVLGRSDLESVLIAIFNYVFPSTNNEPGLDSHKDVI 89
           GT+EKGTNEEIEEFIY+LL VSDDGVLGRSDLESVLIAIFN VFPSTNNE GLDSH+D I
Sbjct: 88  GTFEKGTNEEIEEFIYQLLDVSDDGVLGRSDLESVLIAIFNSVFPSTNNEHGLDSHQDAI 147

Query: 90  QIFVRAATFLENDEQFTYENFKNWCSLLPSVRKFLGS 126
           QIFVRAATF ENDEQFTYENFKNWCSLLPSVRKFLGS
Sbjct: 148 QIFVRAATFSENDEQFTYENFKNWCSLLPSVRKFLGS 184

[Close]

BLAST of CsGy1G016470 vs. ExPASy TrEMBL
Match: A0A1S3B6A2 (TLD domain-containing protein 1 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103486650 PE=4 SV=1)

HSP 1 Score: 183 bits (464), Expect = 1.06e-53
Identity = 89/97 (91.75%), Postives = 92/97 (94.85%), Query Frame = 0


Query: 30  GTYEKGTNEEIEEFIYELLGVSDDGVLGRSDLESVLIAIFNYVFPSTNNEPGLDSHKDVI 89
           GT+EKGTNEEIEEFIY+LL VSDDGVLGRSDLESVLIAIFN VFPSTNNE GLDSH+D I
Sbjct: 88  GTFEKGTNEEIEEFIYQLLDVSDDGVLGRSDLESVLIAIFNSVFPSTNNEHGLDSHQDAI 147

Query: 90  QIFVRAATFLENDEQFTYENFKNWCSLLPSVRKFLGS 126
           QIFVRAATF ENDEQFTYENFKNWCSLLPSVRKFLGS
Sbjct: 148 QIFVRAATFSENDEQFTYENFKNWCSLLPSVRKFLGS 184

[Close]

BLAST of CsGy1G016470 vs. ExPASy TrEMBL
Match: A0A1S3B7J3 (TLD domain-containing protein 1 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103486650 PE=4 SV=1)

HSP 1 Score: 176 bits (447), Expect = 4.10e-51
Identity = 89/103 (86.41%), Postives = 92/103 (89.32%), Query Frame = 0


Query: 30  GTYEKGTNEEIEEFIYELLGVSDDGVLG------RSDLESVLIAIFNYVFPSTNNEPGLD 89
           GT+EKGTNEEIEEFIY+LL VSDDGVLG      RSDLESVLIAIFN VFPSTNNE GLD
Sbjct: 88  GTFEKGTNEEIEEFIYQLLDVSDDGVLGSFHANARSDLESVLIAIFNSVFPSTNNEHGLD 147

Query: 90  SHKDVIQIFVRAATFLENDEQFTYENFKNWCSLLPSVRKFLGS 126
           SH+D IQIFVRAATF ENDEQFTYENFKNWCSLLPSVRKFLGS
Sbjct: 148 SHQDAIQIFVRAATFSENDEQFTYENFKNWCSLLPSVRKFLGS 190

[Close]

BLAST of CsGy1G016470 vs. TAIR 10
Match: AT5G06260.1 (TLD-domain containing nucleolar protein )

HSP 1 Score: 100.9 bits (250), Expect = 7.8e-22
Identity = 45/100 (45.00%), Postives = 70/100 (70.00%), Query Frame = 0


Query: 31  TYEKGTNEEIEEFIYELLGVSDDGVLGRSDLESVLIAIFNYVFPSTNNEPGLDSHKDVIQ 90
           TYEKGT++EI EFIY+ L V+ +GVL RSDLES L+ I   VF + +++     +K ++ 
Sbjct: 89  TYEKGTDDEIAEFIYQTLDVNGNGVLSRSDLESFLVVILKSVFSTESSDAESSDYKKMVD 148

Query: 91  IFVRAATFLENDE----QFTYENFKNWCSLLPSVRKFLGS 127
             + AATF ++D+      ++E+F++WCS +P++RKFLGS
Sbjct: 149 ALLNAATFSKSDDGSEKGMSFEDFRSWCSFVPTIRKFLGS 188

[Close]

BLAST of CsGy1G016470 vs. TAIR 10
Match: AT4G34070.1 (Calcium-binding EF-hand family protein )

HSP 1 Score: 100.1 bits (248), Expect = 1.3e-21
Identity = 45/100 (45.00%), Postives = 71/100 (71.00%), Query Frame = 0


Query: 31  TYEKGTNEEIEEFIYELLGVSDDGVLGRSDLESVLIAIFNYVFPSTNNEPGLDSHKDVIQ 90
           TYEKGT++EI EFIY+ L V+ +GVL RSDLES L+ I   VF + +++     +K+++ 
Sbjct: 135 TYEKGTDDEIAEFIYQTLDVNGNGVLRRSDLESFLVVILKSVFSTESSDAESSDYKEMVD 194

Query: 91  IFVRAATFLENDE----QFTYENFKNWCSLLPSVRKFLGS 127
             + AATF ++D+      ++E+F++WC L+P++RKFLGS
Sbjct: 195 ALLDAATFSKSDDGSEKGMSFEDFRSWCPLVPTIRKFLGS 234

The following BLAST results are available for this feature:

BLAST of CsGy1G016470 vs.


Match Name	E-value	Identity	Description

BLAST of CsGy1G016470 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8652948.1	6.33e-90	100.00	hypothetical protein Csa_017773 [Cucumis sativus]	[more]
XP_031738219.1	3.62e-57	92.86	MTOR-associated protein MEAK7 isoform X2 [Cucumis sativus]	[more]
XP_004136702.3	6.35e-56	93.81	MTOR-associated protein MEAK7 isoform X1 [Cucumis sativus] >KAE8651100.1 hypothe...	[more]
XP_008442885.1	2.18e-53	91.75	PREDICTED: TLD domain-containing protein 1 isoform X2 [Cucumis melo] >KAA0043840...	[more]
XP_008442884.1	8.46e-51	86.41	PREDICTED: TLD domain-containing protein 1 isoform X1 [Cucumis melo]	[more]

BLAST of CsGy1G016470 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LTN2	5.99e-87	94.74	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G240060 PE=4 SV=1	[more]
A0A0A0LGR3	3.51e-58	95.88	TLDc domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G778320 PE=4 S...	[more]
A0A5A7TKW7	1.06e-53	91.75	TLD domain-containing protein 1 isoform X2 OS=Cucumis melo var. makuwa OX=119469...	[more]
A0A1S3B6A2	1.06e-53	91.75	TLD domain-containing protein 1 isoform X2 OS=Cucumis melo OX=3656 GN=LOC1034866...	[more]
A0A1S3B7J3	4.10e-51	86.41	TLD domain-containing protein 1 isoform X1 OS=Cucumis melo OX=3656 GN=LOC1034866...	[more]

BLAST of CsGy1G016470 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G06260.1	7.8e-22	45.00	TLD-domain containing nucleolar protein	[more]
AT4G34070.1	1.3e-21	45.00	Calcium-binding EF-hand family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	1.10.238.10		coord: 15..127 e-value: 3.4E-6 score: 28.4
None	No IPR available	PANTHER	PTHR23354	NUCLEOLAR PROTEIN 7/ESTROGEN RECEPTOR COACTIVATOR-RELATED	coord: 27..127
None	No IPR available	PANTHER	PTHR23354:SF95	CALCIUM-BINDING EF-HAND FAMILY PROTEIN-RELATED	coord: 27..127
IPR011992	EF-hand domain pair	SUPERFAMILY	47473	EF-hand	coord: 24..124

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy1G016470.2	CsGy1G016470.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005509	calcium ion binding