CsGy1G015115 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy1G015115
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	Unknown protein
Location	Gy14Chr1: 11021058 .. 11021458 (+)
RNA-Seq Expression	CsGy1G015115
Synteny	CsGy1G015115

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTCATAGCAAGTTCCTTTTTCTCTATATATTTCTCTCATTCTCCTTCTCCTTCTCCATGGACATTCATGCAAAGGTTCTCCAACACAAAGACCAAATAACTGTTGTAGCAGCAGTTTCAGTTGTTCTGTCATTGTTTGTATATGCAGCTCCTCGATTTCTAAGTATTCTAGCTTTCTTTTGGCCTCTCTTTGCCTCCACAGCTGTACTCTTGGTGGTAATGAACGCCTTTGGAGGTGGTTTCCAAGTTGGAACCGAGATTCATGGTATGAGAGCTGGTGAAGGGATTCTAGATTATGTTGCGGGAAGACCTGAAAATGGCGAAAACCACTATAAGTACCAATAACAGATTATTTCTCACGATCAAATTTAAAAAACATACACTCAAAATTTCTGCTTGTTC

mRNA sequence

CTCATAGCAAGTTCCTTTTTCTCTATATATTTCTCTCATTCTCCTTCTCCTTCTCCATGGACATTCATGCAAAGGTTCTCCAACACAAAGACCAAATAACTGTTGTAGCAGCAGTTTCAGTTGTTCTGTCATTGTTTGTATATGCAGCTCCTCGATTTCTAAGTATTCTAGCTTTCTTTTGGCCTCTCTTTGCCTCCACAGCTGTACTCTTGGTGGTAATGAACGCCTTTGGAGGTGGTTTCCAAGTTGGAACCGAGATTCATGGTATGAGAGCTGGTGAAGGGATTCTAGATTATGTTGCGGGAAGACCTGAAAATGGCGAAAACCACTATAAGTACCAATAACAGATTATTTCTCACGATCAAATTTAAAAAACATACACTCAAAATTTCTGCTTGTTC

Coding sequence (CDS)

ATGGACATTCATGCAAAGGTTCTCCAACACAAAGACCAAATAACTGTTGTAGCAGCAGTTTCAGTTGTTCTGTCATTGTTTGTATATGCAGCTCCTCGATTTCTAAGTATTCTAGCTTTCTTTTGGCCTCTCTTTGCCTCCACAGCTGTACTCTTGGTGGTAATGAACGCCTTTGGAGGTGGTTTCCAAGTTGGAACCGAGATTCATGGTATGAGAGCTGGTGAAGGGATTCTAGATTATGTTGCGGGAAGACCTGAAAATGGCGAAAACCACTATAAGTACCAATAA

Protein sequence

MDIHAKVLQHKDQITVVAAVSVVLSLFVYAAPRFLSILAFFWPLFASTAVLLVVMNAFGGGFQVGTEIHGMRAGEGILDYVAGRPENGENHYKYQ*

Homology

[Close]

BLAST of CsGy1G015115 vs. NCBI nr
Match: KGN64996.1 (hypothetical protein Csa_022896 [Cucumis sativus])

HSP 1 Score: 186 bits (473), Expect = 2.28e-59
Identity = 94/95 (98.95%), Postives = 95/95 (100.00%), Query Frame = 0


Query: 1  MDIHAKVLQHKDQITVVAAVSVVLSLFVYAAPRFLSILAFFWPLFASTAVLLVVMNAFGG 60
          MDIHAKVLQHKDQ+TVVAAVSVVLSLFVYAAPRFLSILAFFWPLFASTAVLLVVMNAFGG
Sbjct: 1  MDIHAKVLQHKDQLTVVAAVSVVLSLFVYAAPRFLSILAFFWPLFASTAVLLVVMNAFGG 60

Query: 61 GFQVGTEIHGMRAGEGILDYVAGRPENGENHYKYQ 95
          GFQVGTEIHGMRAGEGILDYVAGRPENGENHYKYQ
Sbjct: 61 GFQVGTEIHGMRAGEGILDYVAGRPENGENHYKYQ 95

[Close]

BLAST of CsGy1G015115 vs. NCBI nr
Match: KAA0042343.1 (hypothetical protein E6C27_scaffold795G00410 [Cucumis melo var. makuwa] >TYK15467.1 hypothetical protein E5676_scaffold477G00380 [Cucumis melo var. makuwa])

HSP 1 Score: 177 bits (450), Expect = 7.36e-56
Identity = 90/95 (94.74%), Postives = 92/95 (96.84%), Query Frame = 0


Query: 1  MDIHAKVLQHKDQITVVAAVSVVLSLFVYAAPRFLSILAFFWPLFASTAVLLVVMNAFGG 60
          MDI AK+LQHKDQITVVAAVSVVLSLFVY APRFLSILAFFWPLFASTAVLLVVM AFGG
Sbjct: 1  MDIQAKLLQHKDQITVVAAVSVVLSLFVYVAPRFLSILAFFWPLFASTAVLLVVMTAFGG 60

Query: 61 GFQVGTEIHGMRAGEGILDYVAGRPENGENHYKYQ 95
          GFQVG+EIHGMRAGEGILDYVAGRPENGENHYKYQ
Sbjct: 61 GFQVGSEIHGMRAGEGILDYVAGRPENGENHYKYQ 95

[Close]

BLAST of CsGy1G015115 vs. NCBI nr
Match: KAG7012637.1 (hypothetical protein SDJN02_25389, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 153 bits (387), Expect = 3.29e-46
Identity = 79/93 (84.95%), Postives = 82/93 (88.17%), Query Frame = 0


Query: 3  IHAKVLQHKDQITVVAAVSVVLSLFVYAAPRFLSILAFFWPLFASTAVLLVVMNAFGGGF 62
          I  KVLQHKDQ+TVVAAVSVV+SLFVYAAPRFLSILAFFWPLF STAVLLV M AFGGGF
Sbjct: 6  IQTKVLQHKDQLTVVAAVSVVMSLFVYAAPRFLSILAFFWPLFLSTAVLLVAMTAFGGGF 65

Query: 63 QVGTEIHGMRAGEGILDYVAGRPENGENHYKYQ 95
          QVGTE+HG RAGE ILDYVAGRPE  E  YKYQ
Sbjct: 66 QVGTEVHGERAGERILDYVAGRPEYAEYQYKYQ 98

[Close]

BLAST of CsGy1G015115 vs. NCBI nr
Match: KAG6573520.1 (hypothetical protein SDJN03_27407, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 152 bits (384), Expect = 9.43e-46
Identity = 78/93 (83.87%), Postives = 82/93 (88.17%), Query Frame = 0


Query: 3  IHAKVLQHKDQITVVAAVSVVLSLFVYAAPRFLSILAFFWPLFASTAVLLVVMNAFGGGF 62
          I  KVLQHKDQ+TVVAAVSVV+SLFVYAAPRFLSILAFFWPLF STAVLLV M AFGGGF
Sbjct: 6  IQTKVLQHKDQLTVVAAVSVVMSLFVYAAPRFLSILAFFWPLFLSTAVLLVAMTAFGGGF 65

Query: 63 QVGTEIHGMRAGEGILDYVAGRPENGENHYKYQ 95
          QVGTE+HG +AGE ILDYVAGRPE  E  YKYQ
Sbjct: 66 QVGTEVHGEKAGERILDYVAGRPEYAEYQYKYQ 98

[Close]

BLAST of CsGy1G015115 vs. NCBI nr
Match: KAG6583721.1 (hypothetical protein SDJN03_19653, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 124 bits (311), Expect = 3.88e-33
Identity = 72/97 (74.23%), Postives = 78/97 (80.41%), Query Frame = 0


Query: 1   MDIHAKVLQHKDQITVVAAVSVVLSLFVYAAPRFLSILAFFWPLFASTAVLLVVM-NAFG 60
           MD+  KVLQ+KDQITVVAAVSVVLSLF          LAFFWPLFASTA LLV M  AF 
Sbjct: 132 MDVQTKVLQNKDQITVVAAVSVVLSLF----------LAFFWPLFASTAALLVGMIAAFR 191

Query: 61  GGFQVGTEIHGMRA-GEGILDYVAGRPENGENHYKYQ 95
           GGFQVGT+IHG+RA GEGILDYVAGRPE G+NHYKY+
Sbjct: 192 GGFQVGTKIHGVRAAGEGILDYVAGRPEYGKNHYKYR 218

[Close]

BLAST of CsGy1G015115 vs. ExPASy TrEMBL
Match: A0A0A0LYI8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G173160 PE=4 SV=1)

HSP 1 Score: 186 bits (473), Expect = 1.10e-59
Identity = 94/95 (98.95%), Postives = 95/95 (100.00%), Query Frame = 0


Query: 1  MDIHAKVLQHKDQITVVAAVSVVLSLFVYAAPRFLSILAFFWPLFASTAVLLVVMNAFGG 60
          MDIHAKVLQHKDQ+TVVAAVSVVLSLFVYAAPRFLSILAFFWPLFASTAVLLVVMNAFGG
Sbjct: 1  MDIHAKVLQHKDQLTVVAAVSVVLSLFVYAAPRFLSILAFFWPLFASTAVLLVVMNAFGG 60

Query: 61 GFQVGTEIHGMRAGEGILDYVAGRPENGENHYKYQ 95
          GFQVGTEIHGMRAGEGILDYVAGRPENGENHYKYQ
Sbjct: 61 GFQVGTEIHGMRAGEGILDYVAGRPENGENHYKYQ 95

[Close]

BLAST of CsGy1G015115 vs. ExPASy TrEMBL
Match: A0A5D3CU44 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold477G00380 PE=4 SV=1)

HSP 1 Score: 177 bits (450), Expect = 3.57e-56
Identity = 90/95 (94.74%), Postives = 92/95 (96.84%), Query Frame = 0


Query: 1  MDIHAKVLQHKDQITVVAAVSVVLSLFVYAAPRFLSILAFFWPLFASTAVLLVVMNAFGG 60
          MDI AK+LQHKDQITVVAAVSVVLSLFVY APRFLSILAFFWPLFASTAVLLVVM AFGG
Sbjct: 1  MDIQAKLLQHKDQITVVAAVSVVLSLFVYVAPRFLSILAFFWPLFASTAVLLVVMTAFGG 60

Query: 61 GFQVGTEIHGMRAGEGILDYVAGRPENGENHYKYQ 95
          GFQVG+EIHGMRAGEGILDYVAGRPENGENHYKYQ
Sbjct: 61 GFQVGSEIHGMRAGEGILDYVAGRPENGENHYKYQ 95

[Close]

BLAST of CsGy1G015115 vs. ExPASy TrEMBL
Match: A0A2N9EZM9 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS8190 PE=4 SV=1)

HSP 1 Score: 105 bits (261), Expect = 1.88e-27
Identity = 53/87 (60.92%), Postives = 69/87 (79.31%), Query Frame = 0


Query: 1  MDIHAKVLQHKDQITVVAAVSVVLSLFVYAAPRFLSILAFFWPLFASTAVLLVVMNAFGG 60
          MDI  K+LQ++  +T+ A V +VLSL +YAAPR ++ILAFFWPLFASTAVLL+ + AFGG
Sbjct: 1  MDIPEKLLQYRYHLTIAAIVPLVLSLLLYAAPRLVNILAFFWPLFASTAVLLMAILAFGG 60

Query: 61 GFQVGTEIHGMRAGEGILDYVAGRPEN 87
            Q  TE HG +AG+GIL+YV G+PE+
Sbjct: 61 LSQFSTEAHGAKAGQGILEYVGGQPEH 87

[Close]

BLAST of CsGy1G015115 vs. ExPASy TrEMBL
Match: A0A061GGG1 (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_030419 PE=4 SV=1)

HSP 1 Score: 103 bits (258), Expect = 7.62e-26
Identity = 47/95 (49.47%), Postives = 68/95 (71.58%), Query Frame = 0


Query: 1   MDIHAKVLQHKDQITVVAAVSVVLSLFVYAAPRFLSILAFFWPLFASTAVLLVVMNAFGG 60
           MDI  K++Q++   T+    S +++  +Y APR L+IL +FWPLFAST V LV + AFGG
Sbjct: 90  MDIQQKLVQYRYHFTIAILASFIIAFLLYVAPRLLTILTYFWPLFASTTVFLVAIIAFGG 149

Query: 61  GFQVGTEIHGMRAGEGILDYVAGRPENGENHYKYQ 95
           G Q+ TE+HG +AG+G++DYVA RPE+ E   K++
Sbjct: 150 GSQLATEVHGEKAGQGLMDYVAARPEHAEEAQKFE 184

[Close]

BLAST of CsGy1G015115 vs. ExPASy TrEMBL
Match: B9HD48 (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_006G017900 PE=4 SV=1)

HSP 1 Score: 100 bits (250), Expect = 1.12e-25
Identity = 51/96 (53.12%), Postives = 69/96 (71.88%), Query Frame = 0


Query: 1  MDIHAKVLQHKDQITVVAAVSVVLSLFVYAAPRFLSILAFFWPLFASTAVLLVVMNAFGG 60
          MDI  ++LQ++    +    SVVLSL +YAAPR ++ILA+FWPL ASTAV L+++  FGG
Sbjct: 1  MDIPERLLQYRHHFAIAITASVVLSLLLYAAPRLVTILAYFWPLLASTAVFLILILVFGG 60

Query: 61 GF-QVGTEIHGMRAGEGILDYVAGRPENGENHYKYQ 95
              + T+ HG +AGEG+LDYVAG+PEN E   KY+
Sbjct: 61 TVTHMATDSHGEKAGEGLLDYVAGQPENVEQSQKYE 96

[Close]

BLAST of CsGy1G015115 vs. TAIR 10
Match: AT4G16400.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G13175.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 78.6 bits (192), Expect = 3.1e-15
Identity = 43/91 (47.25%), Postives = 60/91 (65.93%), Query Frame = 0


Query: 1   MDIHAKVLQHKDQITVVAAVSVVLSLFVYAAPRFLSILAFFWPLFASTAVLLVVMNAFGG 60
           M+I AK+++++    V   VSV+++  VYAAPR L+ILA+FWPLFASTA  L +   FGG
Sbjct: 122 MEIQAKLMEYRFHFMVTIMVSVIVASLVYAAPRILNILAYFWPLFASTAAFLAMAITFGG 181

Query: 61  GFQVGTEIHGMRAGEGILDYVAGRPENGENH 92
             Q+  E      GE ++DYVAGRPE+   +
Sbjct: 182 FQQLSEE----ATGERLMDYVAGRPEDSHKN 208

[Close]

BLAST of CsGy1G015115 vs. TAIR 10
Match: AT3G13175.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G16400.1); Has 29 Blast hits to 29 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 29; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 48.1 bits (113), Expect = 4.5e-06
Identity = 35/91 (38.46%), Postives = 49/91 (53.85%), Query Frame = 0


Query: 1  MDIHAKVLQHKDQITVVAAVSVVLSLFVYAAPRFLSILAFFWPLFASTAVLLVVMNAFGG 60
          M+   K+L+ K QI     +S++    V  +P FL++L++FWPLF STA+ L  +  F  
Sbjct: 1  MEFREKLLKFKLQIVFAFVLSLLTVALVAYSPGFLTVLSYFWPLFLSTALFLAAVFFFAR 60

Query: 61 GFQV---GTEIHGMRAG-----EGILDYVAG 84
             +    T I G  AG     EGILDYV G
Sbjct: 61 TSDLPVSSTIIPGEGAGLKVAAEGILDYVVG 91

The following BLAST results are available for this feature:

BLAST of CsGy1G015115 vs.


Match Name	E-value	Identity	Description

BLAST of CsGy1G015115 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN64996.1	2.28e-59	98.95	hypothetical protein Csa_022896 [Cucumis sativus]	[more]
KAA0042343.1	7.36e-56	94.74	hypothetical protein E6C27_scaffold795G00410 [Cucumis melo var. makuwa] >TYK1546...	[more]
KAG7012637.1	3.29e-46	84.95	hypothetical protein SDJN02_25389, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6573520.1	9.43e-46	83.87	hypothetical protein SDJN03_27407, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6583721.1	3.88e-33	74.23	hypothetical protein SDJN03_19653, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of CsGy1G015115 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LYI8	1.10e-59	98.95	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G173160 PE=4 SV=1	[more]
A0A5D3CU44	3.57e-56	94.74	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A2N9EZM9	1.88e-27	60.92	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS8190 PE=4 SV=1	[more]
A0A061GGG1	7.62e-26	49.47	Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_030419 PE=4 SV=1	[more]
B9HD48	1.12e-25	53.13	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_006G017900 PE=4 ...	[more]

BLAST of CsGy1G015115 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G16400.1	3.1e-15	47.25	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT3G13175.1	4.5e-06	38.46	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34125	OS01G0762900 PROTEIN	coord: 1..91
None	No IPR available	PANTHER	PTHR34125:SF7	TRANSMEMBRANE PROTEIN	coord: 1..91

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy1G015115.1	CsGy1G015115.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane