CsGy1G014890 (gene) Cucumber (Gy14) v2.1

Overview
NameCsGy1G014890
Typegene
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
DescriptionPolyprotein
LocationGy14Chr1: 10805917 .. 10806705 (-)
RNA-Seq ExpressionCsGy1G014890
SyntenyCsGy1G014890
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGGAAGGATTACCTAGATATGCTCATGAAAAGTTCTACTCCACTATGGTTACAAACAGTAGAGCGTCGAAGATCGATTGGGAAGGTATCTTGTATGGAGATATTAATTCCACAATTTAAAAGGTATGCATTGAGACTTTCCAACAATAGAGGTATGCTACCAAAATAGTGAAAGACTTCGACTATTGCAAAGAATTGGGTTCTTTTGCAAACAGTACATAATCGACAATACTCCTCTATCTAGAAAGAAGCCTCGTTCACAGAAATTATTTAGAAGAAATGTTCAGAATGAATCAAATCAGTATGGTAGCCGGAAAAGGAAACACCATTTCAAGGAAAAGAACAAGCAAAAATTTTCTAAAGAAAATACAACTTGTTTTAGGTGCCATAAGAAAGATCATTACGCTAACCGATGTCTTGTCTTCAAGAAAATCAACAAAATGGAGATTTATGAAAAAGAAACCAATCTCTATTACAGGTGATTCAAGCCGAAGAACTATCCTCTAACGAAGAGCAATCATTGTCAAGTCAAGATGAAGACATGCTCAATGCTATCTTTGAAGATTCTTTGGAAGAACCTTCGTCATATGATTATGAGTCAGTAGACGAAGAACCAATACCTTGCTCTGGATGCATTAATGTTCTTACCAACACCCAGAAAGATCTTTTGGATATCGTCGAAGATGATGCCATAAGGAAGAAAATACTTTTGAGACTACAGGAAGACTTAGAGACTCTCGATCAAAAGTTCAAAGATCTGATGAATTTCAGTTTCAAATTGTTATGA

mRNA sequence

ATGTGGAAGGATTACCTAGATATGCTCATGAAAAGTTCTACTCCACTATGGTTACAAACAGTAGAGCGTCGAAGATCGATTGGGAAGGTGATTCAAGCCGAAGAACTATCCTCTAACGAAGAGCAATCATTGTCAAGTCAAGATGAAGACATGCTCAATGCTATCTTTGAAGATTCTTTGGAAGAACCTTCGTCATATGATTATGAGTCAGTAGACGAAGAACCAATACCTTGCTCTGGATGCATTAATGTTCTTACCAACACCCAGAAAGATCTTTTGGATATCGTCGAAGATGATGCCATAAGGAAGAAAATACTTTTGAGACTACAGGAAGACTTAGAGACTCTCGATCAAAAGTTCAAAGATCTGATGAATTTCAGTTTCAAATTGTTATGA

Coding sequence (CDS)

ATGTGGAAGGATTACCTAGATATGCTCATGAAAAGTTCTACTCCACTATGGTTACAAACAGTAGAGCGTCGAAGATCGATTGGGAAGGTGATTCAAGCCGAAGAACTATCCTCTAACGAAGAGCAATCATTGTCAAGTCAAGATGAAGACATGCTCAATGCTATCTTTGAAGATTCTTTGGAAGAACCTTCGTCATATGATTATGAGTCAGTAGACGAAGAACCAATACCTTGCTCTGGATGCATTAATGTTCTTACCAACACCCAGAAAGATCTTTTGGATATCGTCGAAGATGATGCCATAAGGAAGAAAATACTTTTGAGACTACAGGAAGACTTAGAGACTCTCGATCAAAAGTTCAAAGATCTGATGAATTTCAGTTTCAAATTGTTATGA

Protein sequence

MWKDYLDMLMKSSTPLWLQTVERRRSIGKVIQAEELSSNEEQSLSSQDEDMLNAIFEDSLEEPSSYDYESVDEEPIPCSGCINVLTNTQKDLLDIVEDDAIRKKILLRLQEDLETLDQKFKDLMNFSFKLL*
Homology
BLAST of CsGy1G014890 vs. NCBI nr
Match: KAE8652823.1 (hypothetical protein Csa_022767, partial [Cucumis sativus])

HSP 1 Score: 186 bits (472), Expect = 1.74e-58
Identity = 97/102 (95.10%), Postives = 98/102 (96.08%), Query Frame = 0

Query: 30  VIQAEELSSNEEQSLSSQDEDMLNAIFEDSLEEPSSYDYESVDEEPIPCSGCINVLTNTQ 89
           VIQ EELSSN+EQSLSSQDEDMLNAIFEDSLEEPSSYDYESVDEEPIPCSGCINVLTNTQ
Sbjct: 1   VIQVEELSSNKEQSLSSQDEDMLNAIFEDSLEEPSSYDYESVDEEPIPCSGCINVLTNTQ 60

Query: 90  KDLLDIVEDDAIRKKILLRLQEDLETLDQKFKDLMNFSFKLL 131
           KDLLDIVEDDAIRKKILLRLQEDLETLDQKFKD M F FKLL
Sbjct: 61  KDLLDIVEDDAIRKKILLRLQEDLETLDQKFKDPMKFRFKLL 102

BLAST of CsGy1G014890 vs. NCBI nr
Match: KAA0062816.1 (hypothetical protein E6C27_scaffold357G00360 [Cucumis melo var. makuwa] >TYJ96737.1 hypothetical protein E5676_scaffold986G00280 [Cucumis melo var. makuwa])

HSP 1 Score: 126 bits (317), Expect = 2.37e-34
Identity = 69/113 (61.06%), Postives = 89/113 (78.76%), Query Frame = 0

Query: 22  ERRRSIGKVIQAEELSSNEEQSLSSQDEDMLNAIFEDSLEEPSSYDYESVDEEPIPCSGC 81
           + ++S+ KV++AEELSS EE+S S ++ED+LN + ++S EEPSS + E+  EE IP  GC
Sbjct: 6   DEKQSLLKVVKAEELSSEEEESSSEKEEDLLNVLLKESPEEPSSLENEADSEEAIPSFGC 65

Query: 82  INVLTNTQKDLLDIVE---DDAIRKKILLRLQEDLETLDQKFKDLMNFSFKLL 131
           INVLT T K LLDI+E   D+AIRKKILL+L+EDLET DQKFKD MNFSF+ L
Sbjct: 66  INVLTFTHKGLLDIIEEVDDEAIRKKILLKLREDLETHDQKFKDPMNFSFQTL 118

BLAST of CsGy1G014890 vs. NCBI nr
Match: KAA0037024.1 (polyprotein [Cucumis melo var. makuwa] >TYK06627.1 polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 126 bits (316), Expect = 5.06e-31
Identity = 69/111 (62.16%), Postives = 88/111 (79.28%), Query Frame = 0

Query: 22  ERRRSIGKVIQAEELSSNEEQSLSSQDEDMLNAIFEDSLEEPSSYDYESVDEEPIPCSGC 81
           ++++S+ KVI+AEELSS EE+    ++ED+LN + E+S EEPSS + E+  EE I   GC
Sbjct: 321 DKKQSLSKVIKAEELSSEEEEFSFEKEEDLLNVLLEESSEEPSSSENETDSEEAISYFGC 380

Query: 82  INVLTNTQKDLLDIVE---DDAIRKKILLRLQEDLETLDQKFKDLMNFSFK 129
           INVLT+TQK LLDI+E   D+AIRKKILLRL+EDLET DQKFKD MNFSF+
Sbjct: 381 INVLTSTQKGLLDIIEEVDDEAIRKKILLRLREDLETPDQKFKDPMNFSFQ 431

BLAST of CsGy1G014890 vs. NCBI nr
Match: TYJ98215.1 (polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 123 bits (308), Expect = 1.82e-30
Identity = 66/104 (63.46%), Postives = 85/104 (81.73%), Query Frame = 0

Query: 29  KVIQAEELSSNEEQSLSSQDEDMLNAIFEDSLEEPSSYDYESVDEEPIPCSGCINVLTNT 88
           KV++AEELSS EE+  S ++ED+LN + E+S +E SS + E+ ++E IPCSGCINVLT+T
Sbjct: 69  KVVKAEELSSEEEEFSSEKEEDILNVLLEESSDEHSSSENETDNKEAIPCSGCINVLTST 128

Query: 89  QKDLLDIVE---DDAIRKKILLRLQEDLETLDQKFKDLMNFSFK 129
           Q+ LLDI+E   D+AIRK ILLRL+EDLET DQKFKD MNFSF+
Sbjct: 129 QEGLLDIIEEVDDEAIRKNILLRLREDLETPDQKFKDPMNFSFQ 172

BLAST of CsGy1G014890 vs. NCBI nr
Match: KAA0050194.1 (polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 123 bits (308), Expect = 1.82e-30
Identity = 66/104 (63.46%), Postives = 85/104 (81.73%), Query Frame = 0

Query: 29  KVIQAEELSSNEEQSLSSQDEDMLNAIFEDSLEEPSSYDYESVDEEPIPCSGCINVLTNT 88
           KV++AEELSS EE+  S ++ED+LN + E+S +E SS + E+ ++E IPCSGCINVLT+T
Sbjct: 69  KVVKAEELSSEEEEFSSEKEEDILNVLLEESSDEHSSSENETDNKEAIPCSGCINVLTST 128

Query: 89  QKDLLDIVE---DDAIRKKILLRLQEDLETLDQKFKDLMNFSFK 129
           Q+ LLDI+E   D+AIRK ILLRL+EDLET DQKFKD MNFSF+
Sbjct: 129 QEGLLDIIEEVDDEAIRKNILLRLREDLETPDQKFKDPMNFSFQ 172

BLAST of CsGy1G014890 vs. ExPASy TrEMBL
Match: A0A5D3BC78 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold986G00280 PE=4 SV=1)

HSP 1 Score: 126 bits (317), Expect = 1.15e-34
Identity = 69/113 (61.06%), Postives = 89/113 (78.76%), Query Frame = 0

Query: 22  ERRRSIGKVIQAEELSSNEEQSLSSQDEDMLNAIFEDSLEEPSSYDYESVDEEPIPCSGC 81
           + ++S+ KV++AEELSS EE+S S ++ED+LN + ++S EEPSS + E+  EE IP  GC
Sbjct: 6   DEKQSLLKVVKAEELSSEEEESSSEKEEDLLNVLLKESPEEPSSLENEADSEEAIPSFGC 65

Query: 82  INVLTNTQKDLLDIVE---DDAIRKKILLRLQEDLETLDQKFKDLMNFSFKLL 131
           INVLT T K LLDI+E   D+AIRKKILL+L+EDLET DQKFKD MNFSF+ L
Sbjct: 66  INVLTFTHKGLLDIIEEVDDEAIRKKILLKLREDLETHDQKFKDPMNFSFQTL 118

BLAST of CsGy1G014890 vs. ExPASy TrEMBL
Match: A0A5D3C457 (Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold453G001000 PE=4 SV=1)

HSP 1 Score: 126 bits (316), Expect = 2.45e-31
Identity = 69/111 (62.16%), Postives = 88/111 (79.28%), Query Frame = 0

Query: 22  ERRRSIGKVIQAEELSSNEEQSLSSQDEDMLNAIFEDSLEEPSSYDYESVDEEPIPCSGC 81
           ++++S+ KVI+AEELSS EE+    ++ED+LN + E+S EEPSS + E+  EE I   GC
Sbjct: 321 DKKQSLSKVIKAEELSSEEEEFSFEKEEDLLNVLLEESSEEPSSSENETDSEEAISYFGC 380

Query: 82  INVLTNTQKDLLDIVE---DDAIRKKILLRLQEDLETLDQKFKDLMNFSFK 129
           INVLT+TQK LLDI+E   D+AIRKKILLRL+EDLET DQKFKD MNFSF+
Sbjct: 381 INVLTSTQKGLLDIIEEVDDEAIRKKILLRLREDLETPDQKFKDPMNFSFQ 431

BLAST of CsGy1G014890 vs. ExPASy TrEMBL
Match: A0A5A7U4M8 (Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold355G00240 PE=4 SV=1)

HSP 1 Score: 123 bits (308), Expect = 8.83e-31
Identity = 66/104 (63.46%), Postives = 85/104 (81.73%), Query Frame = 0

Query: 29  KVIQAEELSSNEEQSLSSQDEDMLNAIFEDSLEEPSSYDYESVDEEPIPCSGCINVLTNT 88
           KV++AEELSS EE+  S ++ED+LN + E+S +E SS + E+ ++E IPCSGCINVLT+T
Sbjct: 69  KVVKAEELSSEEEEFSSEKEEDILNVLLEESSDEHSSSENETDNKEAIPCSGCINVLTST 128

Query: 89  QKDLLDIVE---DDAIRKKILLRLQEDLETLDQKFKDLMNFSFK 129
           Q+ LLDI+E   D+AIRK ILLRL+EDLET DQKFKD MNFSF+
Sbjct: 129 QEGLLDIIEEVDDEAIRKNILLRLREDLETPDQKFKDPMNFSFQ 172

BLAST of CsGy1G014890 vs. ExPASy TrEMBL
Match: A0A5D3BI97 (Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold180G001120 PE=4 SV=1)

HSP 1 Score: 123 bits (308), Expect = 8.83e-31
Identity = 66/104 (63.46%), Postives = 85/104 (81.73%), Query Frame = 0

Query: 29  KVIQAEELSSNEEQSLSSQDEDMLNAIFEDSLEEPSSYDYESVDEEPIPCSGCINVLTNT 88
           KV++AEELSS EE+  S ++ED+LN + E+S +E SS + E+ ++E IPCSGCINVLT+T
Sbjct: 69  KVVKAEELSSEEEEFSSEKEEDILNVLLEESSDEHSSSENETDNKEAIPCSGCINVLTST 128

Query: 89  QKDLLDIVE---DDAIRKKILLRLQEDLETLDQKFKDLMNFSFK 129
           Q+ LLDI+E   D+AIRK ILLRL+EDLET DQKFKD MNFSF+
Sbjct: 129 QEGLLDIIEEVDDEAIRKNILLRLREDLETPDQKFKDPMNFSFQ 172

BLAST of CsGy1G014890 vs. ExPASy TrEMBL
Match: A0A5A7UAJ7 (Enzymatic polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1737G001100 PE=4 SV=1)

HSP 1 Score: 123 bits (309), Expect = 1.35e-30
Identity = 68/111 (61.26%), Postives = 88/111 (79.28%), Query Frame = 0

Query: 22  ERRRSIGKVIQAEELSSNEEQSLSSQDEDMLNAIFEDSLEEPSSYDYESVDEEPIPCSGC 81
           + ++S+ KV++AEELSS E++  S ++ED+LN + E+S EEPSS   E+  EE I CSGC
Sbjct: 273 DEKQSLLKVVKAEELSSEEKEFSSEKEEDLLNVLLEESSEEPSSSKNETDIEEVISCSGC 332

Query: 82  INVLTNTQKDLLDIVE---DDAIRKKILLRLQEDLETLDQKFKDLMNFSFK 129
           I+VLT+TQK LLDI+E   D+AIRK ILLRL+EDLET DQKFKD MNFSF+
Sbjct: 333 IDVLTSTQKCLLDIIEEVDDEAIRKNILLRLREDLETPDQKFKDPMNFSFQ 383

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAE8652823.11.74e-5895.10hypothetical protein Csa_022767, partial [Cucumis sativus][more]
KAA0062816.12.37e-3461.06hypothetical protein E6C27_scaffold357G00360 [Cucumis melo var. makuwa] >TYJ9673... [more]
KAA0037024.15.06e-3162.16polyprotein [Cucumis melo var. makuwa] >TYK06627.1 polyprotein [Cucumis melo var... [more]
TYJ98215.11.82e-3063.46polyprotein [Cucumis melo var. makuwa][more]
KAA0050194.11.82e-3063.46polyprotein [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
A0A5D3BC781.15e-3461.06Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3C4572.45e-3162.16Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold453G001000 P... [more]
A0A5A7U4M88.83e-3163.46Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold355G00240 PE... [more]
A0A5D3BI978.83e-3163.46Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold180G001120 P... [more]
A0A5A7UAJ71.35e-3061.26Enzymatic polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold17... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy1G014890.2CsGy1G014890.2mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0016787 hydrolase activity
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding