CsGy1G014870 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy1G014870
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	LEA_2 domain-containing protein
Location	Gy14Chr1: 10779083 .. 10779727 (-)
RNA-Seq Expression	CsGy1G014870
Synteny	CsGy1G014870

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTAACTCCACCAACGGCAGATGGCCCCCGCCTCATCCTGAAACCCAATCCTATCCTCATTGCTTCAATTTCTCACCCTTCATCCGAGGCTTCGCCGCCGGCATAACCCTCCTTCTTTTCATAGTTTGCATCATCTACATTCTCCAATATTTAATCTTCCGACCCATCCTCCTCGCCCTACGACTCGACTCACTTCAGTTCGTTAATTTCTCTGCCGCCGCCGCCGCTCCCTCATGGGTCGTCGGATTTTCCTTCAACAATCCTAACAAGAAGCTCGCCATCTCATTCCGAAACCTTGAGTCCTCCATTTACTACAAAGACAATATTATTGCTCAGGCTCGAACTCGTCGCTTCCTCCTCCCCCCAAGGAACTCCACCACCCTCGTCAGCCCCTTCATTGCTGACTTGCTTGTCGACGAGTCGGTTCTGAACGACATTCATGGAGACTTGGAGCGTGGAACAATTGATTTCACCGTCGTAGTTCTTGGCTATGCCAACGTCGAGATCGGCGTGTGGCGGCCGATGGGTACCGATATTCGGGTTGTTTGCAGTGATTTGTCAGTTAAATTCTCGTGGCCGCCTGGTCTCAGTGGCCGGTCCGGCCAGTTGGTTGGTGGCTCAAGGCAATGCCATCTACACTGA

mRNA sequence

ATGGCTAACTCCACCAACGGCAGATGGCCCCCGCCTCATCCTGAAACCCAATCCTATCCTCATTGCTTCAATTTCTCACCCTTCATCCGAGGCTTCGCCGCCGGCATAACCCTCCTTCTTTTCATAGTTTGCATCATCTACATTCTCCAATATTTAATCTTCCGACCCATCCTCCTCGCCCTACGACTCGACTCACTTCAGTTCGTTAATTTCTCTGCCGCCGCCGCCGCTCCCTCATGGGCTCGAACTCGTCGCTTCCTCCTCCCCCCAAGGAACTCCACCACCCTCGTCAGCCCCTTCATTGCTGACTTGCTTGTCGACGAGTCGGTTCTGAACGACATTCATGGAGACTTGGAGCGTGGAACAATTGATTTCACCGTCGTAGTTCTTGGCTATGCCAACGTCGAGATCGGCGTGTGGCGGCCGATGGGTACCGATATTCGGGTTGTTTGCAGTGATTTGTCAGTTAAATTCTCGTGGCCGCCTGGTCTCAGTGGCCGGTCCGGCCAGTTGGTTGGTGGCTCAAGGCAATGCCATCTACACTGA

Coding sequence (CDS)

ATGGCTAACTCCACCAACGGCAGATGGCCCCCGCCTCATCCTGAAACCCAATCCTATCCTCATTGCTTCAATTTCTCACCCTTCATCCGAGGCTTCGCCGCCGGCATAACCCTCCTTCTTTTCATAGTTTGCATCATCTACATTCTCCAATATTTAATCTTCCGACCCATCCTCCTCGCCCTACGACTCGACTCACTTCAGTTCGTTAATTTCTCTGCCGCCGCCGCCGCTCCCTCATGGGCTCGAACTCGTCGCTTCCTCCTCCCCCCAAGGAACTCCACCACCCTCGTCAGCCCCTTCATTGCTGACTTGCTTGTCGACGAGTCGGTTCTGAACGACATTCATGGAGACTTGGAGCGTGGAACAATTGATTTCACCGTCGTAGTTCTTGGCTATGCCAACGTCGAGATCGGCGTGTGGCGGCCGATGGGTACCGATATTCGGGTTGTTTGCAGTGATTTGTCAGTTAAATTCTCGTGGCCGCCTGGTCTCAGTGGCCGGTCCGGCCAGTTGGTTGGTGGCTCAAGGCAATGCCATCTACACTGA

Protein sequence

MANSTNGRWPPPHPETQSYPHCFNFSPFIRGFAAGITLLLFIVCIIYILQYLIFRPILLALRLDSLQFVNFSAAAAAPSWARTRRFLLPPRNSTTLVSPFIADLLVDESVLNDIHGDLERGTIDFTVVVLGYANVEIGVWRPMGTDIRVVCSDLSVKFSWPPGLSGRSGQLVGGSRQCHLH*

Homology

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BLAST of CsGy1G014870 vs. NCBI nr
Match: KGN65002.2 (hypothetical protein Csa_022841 [Cucumis sativus])

HSP 1 Score: 365 bits (936), Expect = 3.37e-127
Identity = 177/181 (97.79%), Postives = 180/181 (99.45%), Query Frame = 0


Query: 1   MANSTNGRWPPPHPETQSYPHCFNFSPFIRGFAAGITLLLFIVCIIYILQYLIFRPILLA 60
           MANSTNGRWPPPHPETQ++PHCFNFSPFIRGFAAGITLLLFIVCIIYILQYLIFRPILLA
Sbjct: 1   MANSTNGRWPPPHPETQTHPHCFNFSPFIRGFAAGITLLLFIVCIIYILQYLIFRPILLA 60

Query: 61  LRLDSLQFVNFSAAAAAPSWARTRRFLLPPRNSTTLVSPFIADLLVDESVLNDIHGDLER 120
           LRLDSLQFVNFSA AAAPSWARTRRFLLPPRNSTTLVSPFIADLLVDESVLNDIHGDLER
Sbjct: 61  LRLDSLQFVNFSATAAAPSWARTRRFLLPPRNSTTLVSPFIADLLVDESVLNDIHGDLER 120

Query: 121 GTIDFTVVVLGYANVEIGVWRPMGTDIRVVCSDLSVKFSWPPGLSGRSGQLVGGSRQCHL 180
           GTIDFTVVVLGYANVEIGVWRP+GTDIRVVCSDLSVKFSWPPGLSGRSGQLVGGSRQCHL
Sbjct: 121 GTIDFTVVVLGYANVEIGVWRPIGTDIRVVCSDLSVKFSWPPGLSGRSGQLVGGSRQCHL 180

[Close]

BLAST of CsGy1G014870 vs. NCBI nr
Match: XP_008463664.1 (PREDICTED: uncharacterized protein LOC103501757 [Cucumis melo] >KAA0035579.1 protein YLS9 isoform X2 [Cucumis melo var. makuwa] >TYK30956.1 protein YLS9 isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 259 bits (661), Expect = 8.63e-85
Identity = 139/214 (64.95%), Postives = 155/214 (72.43%), Query Frame = 0


Query: 1   MANSTNGRWPPPHPETQSYPHCFNFSPFIRGFAAGITLLLFIVCIIYILQYLIFRPILLA 60
           MAN+TN RWPPPHPE+QS+ HCFN SPF+RGFAAG+ LLLFI  +IY LQ+L F PIL A
Sbjct: 1   MANTTNSRWPPPHPESQSHLHCFNSSPFLRGFAAGMALLLFIAFVIYSLQWLFFHPILPA 60

Query: 61  LRLDSLQFVNFS-AAAAAPSW---------------------------------ARTRRF 120
           LRLDSLQ  NFS AAAAAPSW                                 AR RRF
Sbjct: 61  LRLDSLQLANFSSAAAAAPSWIVGFSINNPNKKLAISFQNLDSSIYYKDNIIAQARIRRF 120

Query: 121 LLPPRNSTTLVSPFIADLLVDESVLNDIHGDLERGTIDFTVVVLGYANVEIGVWRPMGTD 180
           LL PRNSTTLV PFIA  LVDESVLNDI+GDL RGTI+FTVVVLGYAN +I +W+  GT+
Sbjct: 121 LLRPRNSTTLVIPFIAVSLVDESVLNDINGDLARGTINFTVVVLGYANFQISLWQWRGTN 180

[Close]

BLAST of CsGy1G014870 vs. NCBI nr
Match: XP_018857049.1 (uncharacterized protein At1g08160-like [Juglans regia] >KAF5447433.1 hypothetical protein F2P56_032987 [Juglans regia])

HSP 1 Score: 96.3 bits (238), Expect = 1.18e-20
Identity = 73/216 (33.80%), Postives = 99/216 (45.83%), Query Frame = 0


Query: 10  PPPHP------ETQSYPHCFNFSP---FIRGFAAGITLLLFIVCIIYILQYLIFRPILLA 69
           PPPH         Q YP+ +  S    F+R F A + L+ F+V +  ++ +L+ RP L  
Sbjct: 31  PPPHQAPPYYYNNQPYPYPYPASSSRNFVRRFLAAMILVFFLVGVAILVLWLVLRPRLPD 90

Query: 70  LRLDSLQFVNFSAAAAA--PSW---------------------------------ARTRR 129
            R+DSL   NFS+A+++   +W                                  R   
Sbjct: 91  FRVDSLSLSNFSSASSSLTGNWNVRFSVYNPNKKLSISYEEVLSSLFYKKEFISNTRMPP 150

Query: 130 FLLPPRNSTTL-VSPFIADLLVDESVLNDIHGDLERGTIDFTVVVLGYANVEIGVWRPMG 180
           F L  RN T L VS   AD  VD  V+NDI+GD  RGT+ F V+V  +     G WRP  
Sbjct: 151 FKLGKRNQTVLDVSFSAADTYVDRWVVNDINGDRARGTVSFNVLVKAWVQFRAGAWRPRN 210

[Close]

BLAST of CsGy1G014870 vs. NCBI nr
Match: XP_040991250.1 (uncharacterized protein At1g08160-like [Juglans microcarpa x Juglans regia])

HSP 1 Score: 92.8 bits (229), Expect = 2.46e-19
Identity = 71/216 (32.87%), Postives = 97/216 (44.91%), Query Frame = 0


Query: 10  PPPHP------ETQSYPHCFNFSP---FIRGFAAGITLLLFIVCIIYILQYLIFRPILLA 69
           PPPH         Q YP+ +  S    F+R F A + L+ F++ +  ++ +L+ RP L  
Sbjct: 31  PPPHQAPPYYYNNQPYPYPYAASSSRNFVRRFLAAMILVFFLIGVAILVLWLVLRPRLPD 90

Query: 70  LRLDSLQFVNFSAAAAA--PSW---------------------------------ARTRR 129
            R+DSL   NFS+A++    +W                                  R   
Sbjct: 91  FRVDSLSLSNFSSASSTLTGNWNVRFSVYNPNKKLSISYEEVLSSLFYKSEFISHTRMPP 150

Query: 130 FLLPPRNSTTL-VSPFIADLLVDESVLNDIHGDLERGTIDFTVVVLGYANVEIGVWRPMG 180
           F L  RN T L VS   AD  VD  V+NDI+ D  RGT+ F V+V  +     G WRP  
Sbjct: 151 FKLGKRNQTVLDVSFSAADTYVDRWVVNDIYWDRARGTVSFNVLVKAWVQFRAGAWRPRN 210

[Close]

BLAST of CsGy1G014870 vs. NCBI nr
Match: XP_042956465.1 (uncharacterized protein At1g08160 [Carya illinoinensis] >KAG6632036.1 hypothetical protein CIPAW_13G131000 [Carya illinoinensis] >KAG6682257.1 hypothetical protein I3842_13G129700 [Carya illinoinensis] >KAG7950481.1 hypothetical protein I3843_13G114700 [Carya illinoinensis])

HSP 1 Score: 91.7 bits (226), Expect = 6.76e-19
Identity = 70/219 (31.96%), Postives = 99/219 (45.21%), Query Frame = 0


Query: 10  PPPHPETQSYPHCFNFSP------------FIRGFAAGITLLLFIVCIIYILQYLIFRPI 69
           PPPH   Q++P+ +N  P            F+R F A +  + F++ +  ++ +L+ RP 
Sbjct: 31  PPPH---QAHPYYYNNQPYPYPYPASSSRNFVRRFLAAMIFVFFLIGVAILVIWLVLRPR 90

Query: 70  LLALRLDSLQFVNFSAAAAAPSWARTRRFL------------------------------ 129
           L   R+DSL   NFS+A+++ +     RF                               
Sbjct: 91  LPEFRVDSLSLSNFSSASSSLTGNWNVRFSVYNPNKKLSISYEEVLASLFYKSEFISNTQ 150

Query: 130 LPP-----RNSTTL-VSPFIADLLVDESVLNDIHGDLERGTIDFTVVVLGYANVEIGVWR 180
           +PP     RN T L VS   AD  V   V+NDI+GD  RGT+ F V+V  +     G WR
Sbjct: 151 MPPFKLRKRNQTVLDVSFSAADAYVARWVVNDINGDRARGTVSFNVMVKAWVQFRAGAWR 210

[Close]

BLAST of CsGy1G014870 vs. ExPASy TrEMBL
Match: A0A0A0LT76 (LEA_2 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G169920 PE=4 SV=1)

HSP 1 Score: 348 bits (892), Expect = 2.68e-120
Identity = 177/214 (82.71%), Postives = 180/214 (84.11%), Query Frame = 0


Query: 1   MANSTNGRWPPPHPETQSYPHCFNFSPFIRGFAAGITLLLFIVCIIYILQYLIFRPILLA 60
           MANSTNGRWPPPHPETQ++PHCFNFSPFIRGFAAGITLLLFIVCIIYILQYLIFRPILLA
Sbjct: 1   MANSTNGRWPPPHPETQTHPHCFNFSPFIRGFAAGITLLLFIVCIIYILQYLIFRPILLA 60

Query: 61  LRLDSLQFVNFSAAAAAPSW---------------------------------ARTRRFL 120
           LRLDSLQFVNFSA AAAPSW                                 ARTRRFL
Sbjct: 61  LRLDSLQFVNFSATAAAPSWVVGFSINNPNKKLAISFRNLESSIYYKDNIIAQARTRRFL 120

Query: 121 LPPRNSTTLVSPFIADLLVDESVLNDIHGDLERGTIDFTVVVLGYANVEIGVWRPMGTDI 180
           LPPRNSTTLVSPFIADLLVDESVLNDIHGDLERGTIDFTVVVLGYANVEIGVWRP+GTDI
Sbjct: 121 LPPRNSTTLVSPFIADLLVDESVLNDIHGDLERGTIDFTVVVLGYANVEIGVWRPIGTDI 180

[Close]

BLAST of CsGy1G014870 vs. ExPASy TrEMBL
Match: A0A5D3E5N0 (Protein YLS9 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G001820 PE=4 SV=1)

HSP 1 Score: 259 bits (661), Expect = 4.18e-85
Identity = 139/214 (64.95%), Postives = 155/214 (72.43%), Query Frame = 0


Query: 1   MANSTNGRWPPPHPETQSYPHCFNFSPFIRGFAAGITLLLFIVCIIYILQYLIFRPILLA 60
           MAN+TN RWPPPHPE+QS+ HCFN SPF+RGFAAG+ LLLFI  +IY LQ+L F PIL A
Sbjct: 1   MANTTNSRWPPPHPESQSHLHCFNSSPFLRGFAAGMALLLFIAFVIYSLQWLFFHPILPA 60

Query: 61  LRLDSLQFVNFS-AAAAAPSW---------------------------------ARTRRF 120
           LRLDSLQ  NFS AAAAAPSW                                 AR RRF
Sbjct: 61  LRLDSLQLANFSSAAAAAPSWIVGFSINNPNKKLAISFQNLDSSIYYKDNIIAQARIRRF 120

Query: 121 LLPPRNSTTLVSPFIADLLVDESVLNDIHGDLERGTIDFTVVVLGYANVEIGVWRPMGTD 180
           LL PRNSTTLV PFIA  LVDESVLNDI+GDL RGTI+FTVVVLGYAN +I +W+  GT+
Sbjct: 121 LLRPRNSTTLVIPFIAVSLVDESVLNDINGDLARGTINFTVVVLGYANFQISLWQWRGTN 180

[Close]

BLAST of CsGy1G014870 vs. ExPASy TrEMBL
Match: A0A1S3CJS5 (uncharacterized protein LOC103501757 OS=Cucumis melo OX=3656 GN=LOC103501757 PE=4 SV=1)

HSP 1 Score: 259 bits (661), Expect = 4.18e-85
Identity = 139/214 (64.95%), Postives = 155/214 (72.43%), Query Frame = 0


Query: 1   MANSTNGRWPPPHPETQSYPHCFNFSPFIRGFAAGITLLLFIVCIIYILQYLIFRPILLA 60
           MAN+TN RWPPPHPE+QS+ HCFN SPF+RGFAAG+ LLLFI  +IY LQ+L F PIL A
Sbjct: 1   MANTTNSRWPPPHPESQSHLHCFNSSPFLRGFAAGMALLLFIAFVIYSLQWLFFHPILPA 60

Query: 61  LRLDSLQFVNFS-AAAAAPSW---------------------------------ARTRRF 120
           LRLDSLQ  NFS AAAAAPSW                                 AR RRF
Sbjct: 61  LRLDSLQLANFSSAAAAAPSWIVGFSINNPNKKLAISFQNLDSSIYYKDNIIAQARIRRF 120

Query: 121 LLPPRNSTTLVSPFIADLLVDESVLNDIHGDLERGTIDFTVVVLGYANVEIGVWRPMGTD 180
           LL PRNSTTLV PFIA  LVDESVLNDI+GDL RGTI+FTVVVLGYAN +I +W+  GT+
Sbjct: 121 LLRPRNSTTLVIPFIAVSLVDESVLNDINGDLARGTINFTVVVLGYANFQISLWQWRGTN 180

[Close]

BLAST of CsGy1G014870 vs. ExPASy TrEMBL
Match: A0A2I4HLK5 (uncharacterized protein At1g08160-like OS=Juglans regia OX=51240 GN=LOC109019244 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 5.71e-21
Identity = 73/216 (33.80%), Postives = 99/216 (45.83%), Query Frame = 0


Query: 10  PPPHP------ETQSYPHCFNFSP---FIRGFAAGITLLLFIVCIIYILQYLIFRPILLA 69
           PPPH         Q YP+ +  S    F+R F A + L+ F+V +  ++ +L+ RP L  
Sbjct: 31  PPPHQAPPYYYNNQPYPYPYPASSSRNFVRRFLAAMILVFFLVGVAILVLWLVLRPRLPD 90

Query: 70  LRLDSLQFVNFSAAAAA--PSW---------------------------------ARTRR 129
            R+DSL   NFS+A+++   +W                                  R   
Sbjct: 91  FRVDSLSLSNFSSASSSLTGNWNVRFSVYNPNKKLSISYEEVLSSLFYKKEFISNTRMPP 150

Query: 130 FLLPPRNSTTL-VSPFIADLLVDESVLNDIHGDLERGTIDFTVVVLGYANVEIGVWRPMG 180
           F L  RN T L VS   AD  VD  V+NDI+GD  RGT+ F V+V  +     G WRP  
Sbjct: 151 FKLGKRNQTVLDVSFSAADTYVDRWVVNDINGDRARGTVSFNVLVKAWVQFRAGAWRPRN 210

[Close]

BLAST of CsGy1G014870 vs. ExPASy TrEMBL
Match: A0A5D3BCX0 (Protein YLS9-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold182G00270 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 7.64e-16
Identity = 73/233 (31.33%), Postives = 96/233 (41.20%), Query Frame = 0


Query: 6   NGRWPPP---HPETQSYPHC---FNFSP----------------FIRGFAAGITLLLFIV 65
           NGR PPP   HP+ Q+YP+    +++                  F+R   AGI ++  I 
Sbjct: 16  NGRPPPPSNSHPQGQAYPYAAPPYSYPTQYANPYDSTHHNARLSFLRALIAGIIVVFIIT 75

Query: 66  CIIYILQYLIFRPILLALRLDSLQFVNFSAAAAA--PSWARTRRFLLPPRNST------- 125
            +I  + +L+ RP L   R+DS Q  NFS AA +   SW        P +  T       
Sbjct: 76  AVILFIIWLVLRPQLPEFRVDSFQVTNFSTAAQSLSASWFIGFSVFNPNKKMTVSYDFVD 135

Query: 126 ------------TLVSPFIAD---------------LLVDESVLNDIHGDLERGTIDFTV 180
                       T V PF  D                 V+ S LN I+ D  RGTI F V
Sbjct: 136 STLFYNNEFLTETRVPPFTQDKRTQSFVNASLSSLNAYVEASSLNKINDDRRRGTIKFNV 195

The following BLAST results are available for this feature:

BLAST of CsGy1G014870 vs.


Match Name	E-value	Identity	Description

BLAST of CsGy1G014870 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN65002.2	3.37e-127	97.79	hypothetical protein Csa_022841 [Cucumis sativus]	[more]
XP_008463664.1	8.63e-85	64.95	PREDICTED: uncharacterized protein LOC103501757 [Cucumis melo] >KAA0035579.1 pro...	[more]
XP_018857049.1	1.18e-20	33.80	uncharacterized protein At1g08160-like [Juglans regia] >KAF5447433.1 hypothetica...	[more]
XP_040991250.1	2.46e-19	32.87	uncharacterized protein At1g08160-like [Juglans microcarpa x Juglans regia]	[more]
XP_042956465.1	6.76e-19	31.96	uncharacterized protein At1g08160 [Carya illinoinensis] >KAG6632036.1 hypothetic...	[more]

BLAST of CsGy1G014870 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LT76	2.68e-120	82.71	LEA_2 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G169920 PE=4 ...	[more]
A0A5D3E5N0	4.18e-85	64.95	Protein YLS9 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3CJS5	4.18e-85	64.95	uncharacterized protein LOC103501757 OS=Cucumis melo OX=3656 GN=LOC103501757 PE=...	[more]
A0A2I4HLK5	5.71e-21	33.80	uncharacterized protein At1g08160-like OS=Juglans regia OX=51240 GN=LOC109019244...	[more]
A0A5D3BCX0	7.64e-16	31.33	Protein YLS9-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold182G00...	[more]

BLAST of CsGy1G014870 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR31852:SF2	GRPE-LIKE PROTEIN	coord: 82..179
None	No IPR available	PANTHER	PTHR31852:SF2	GRPE-LIKE PROTEIN	coord: 10..80
None	No IPR available	PANTHER	PTHR31852	LATE EMBRYOGENESIS ABUNDANT (LEA) HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY	coord: 10..80
None	No IPR available	PANTHER	PTHR31852	LATE EMBRYOGENESIS ABUNDANT (LEA) HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY	coord: 82..179

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy1G014870.2	CsGy1G014870.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane