CsGy1G014470 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy1G014470
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	THO complex subunit 2
Location	Gy14Chr1: 10240497 .. 10240920 (-)
RNA-Seq Expression	CsGy1G014470
Synteny	CsGy1G014470

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTAGCAAGCAGTTTGATAGATGGCATGGAACTCTGCTTCAATATGTGGAATTTCTTAGTACTGCAGTTGTCCATCTTTATCTCCTTCATCTCGAGGACTATGCGCATGTGTCACTGTCATACGACTTCTGTTTTCTTGGGATTGTGTGTGCGTTTTCTCATAATTGAATTACGTACTTTTGATATTTGTCTATTCTTTATTTATAAGATTTAAACTCTCAATATATTATGAATTAAAGTTCTTTTGTAGGCAATAGTTCTGATCTGGAATGACTCGTTTTTGTAGGTTGCTTTCATAATTTATCGGCCAATGATGAGGCTATTTAAGTGTCAAGGTGGTTCTAATATCTTCTGGCCACTGAATGGAAATGATGCAAATTTTGTAGGCAATCGTTTTGATCTGGATCTTGGTTCTTTGTAG

mRNA sequence

ATGGTTAGCAAGCAGTTTGATAGATGGCATGGAACTCTGCTTCAATATGTGGAATTTCTTAGTACTGCAGTTGTCCATCTTTATCTCCTTCATCTCGAGGACTATGCGCATGTGTCACTGTCATACGACTTCTGTTTTCTTGGGATTGTTGCTTTCATAATTTATCGGCCAATGATGAGGCTATTTAAGTGTCAAGGTGGTTCTAATATCTTCTGGCCACTGAATGGAAATGATGCAAATTTTGTAGGCAATCGTTTTGATCTGGATCTTGGTTCTTTGTAG

Coding sequence (CDS)

ATGGTTAGCAAGCAGTTTGATAGATGGCATGGAACTCTGCTTCAATATGTGGAATTTCTTAGTACTGCAGTTGTCCATCTTTATCTCCTTCATCTCGAGGACTATGCGCATGTGTCACTGTCATACGACTTCTGTTTTCTTGGGATTGTTGCTTTCATAATTTATCGGCCAATGATGAGGCTATTTAAGTGTCAAGGTGGTTCTAATATCTTCTGGCCACTGAATGGAAATGATGCAAATTTTGTAGGCAATCGTTTTGATCTGGATCTTGGTTCTTTGTAG

Protein sequence

MVSKQFDRWHGTLLQYVEFLSTAVVHLYLLHLEDYAHVSLSYDFCFLGIVAFIIYRPMMRLFKCQGGSNIFWPLNGNDANFVGNRFDLDLGSL*

Homology

[Close]

BLAST of CsGy1G014470 vs. ExPASy Swiss-Prot
Match: F4IAT2 (THO complex subunit 2 OS=Arabidopsis thaliana OX=3702 GN=THO2 PE=1 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 8.4e-10
Identity = 33/79 (41.77%), Postives = 50/79 (63.29%), Query Frame = 0


Query: 1   MVSKQFDRWHGTLLQYVEFLSTAVVHLYLLHLEDYAHVSLSYDFCFLGIVAFIIYRPMMR 60
           MV++QFDR HG LLQYV+FLS+AV           +   L + +     VAF+++RP+MR
Sbjct: 790 MVTEQFDRCHGILLQYVDFLSSAVSPTTAYARLVPSLDELVHTYHLEAEVAFLVFRPVMR 849

Query: 61  LFKCQGGSNIFWPLNGNDA 80
           LFKC+   ++ WPL+  ++
Sbjct: 850 LFKCRRNGDVSWPLDSGES 868

[Close]

BLAST of CsGy1G014470 vs. NCBI nr
Match: KGN64916.1 (hypothetical protein Csa_022735 [Cucumis sativus])

HSP 1 Score: 193 bits (490), Expect = 5.02e-62
Identity = 91/93 (97.85%), Postives = 92/93 (98.92%), Query Frame = 0


Query: 1  MVSKQFDRWHGTLLQYVEFLSTAVVHLYLLHLEDYAHVSLSYDFCFLGIVAFIIYRPMMR 60
          MVSKQFDRWHGTLLQYVEFLSTAVVHLYLL LEDYAHVSLSYDFCFLGIV+FIIYRPMMR
Sbjct: 1  MVSKQFDRWHGTLLQYVEFLSTAVVHLYLLDLEDYAHVSLSYDFCFLGIVSFIIYRPMMR 60

Query: 61 LFKCQGGSNIFWPLNGNDANFVGNRFDLDLGSL 93
          LFKCQGGSNIFWPLNGNDANFVGNRFDLDLGSL
Sbjct: 61 LFKCQGGSNIFWPLNGNDANFVGNRFDLDLGSL 93

[Close]

BLAST of CsGy1G014470 vs. NCBI nr
Match: XP_008467094.1 (PREDICTED: THO complex subunit 2 [Cucumis melo])

HSP 1 Score: 104 bits (259), Expect = 1.57e-23
Identity = 61/109 (55.96%), Postives = 71/109 (65.14%), Query Frame = 0


Query: 1   MVSKQFDRWHGTLLQYVEFLSTAVVHLYLLHLEDYAHV-----SLSYDFCFLGIVAFIIY 60
           MVS+QFDR HGTLLQYVEFL+TAV          YA +      L++ +     VAF+IY
Sbjct: 798 MVSEQFDRCHGTLLQYVEFLTTAVTPA-----SAYAQLIPSLNELAHLYHLDPEVAFLIY 857

Query: 61  RPMMRLFKCQGGSNIFWPLNGNDANFVGNRFDL-----------DLGSL 93
           RP+MRLFKCQGGS+IFWPL+GNDAN VGN  DL           DLGSL
Sbjct: 858 RPIMRLFKCQGGSDIFWPLDGNDANVVGNSSDLEPAECPGDVVLDLGSL 901

[Close]

BLAST of CsGy1G014470 vs. NCBI nr
Match: XP_022994003.1 (THO complex subunit 2-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 103 bits (258), Expect = 2.14e-23
Identity = 54/94 (57.45%), Postives = 67/94 (71.28%), Query Frame = 0


Query: 1   MVSKQFDRWHGTLLQYVEFLSTAVVHLYLLHLEDYAHV-----SLSYDFCFLGIVAFIIY 60
           MVS+QFDR HGTLLQYVEFLS+AV          YAH+      L++ +     VAF++Y
Sbjct: 669 MVSEQFDRCHGTLLQYVEFLSSAVTPA-----SAYAHLIPSLNELAHRYHLDPEVAFLMY 728

Query: 61  RPMMRLFKCQGGSNIFWPLNGNDANFVGNRFDLD 89
           RP+MRLFKCQGGS+IFWPL+GNDAN  GN  D++
Sbjct: 729 RPIMRLFKCQGGSDIFWPLDGNDANVAGNNSDME 757

[Close]

BLAST of CsGy1G014470 vs. NCBI nr
Match: XP_022994002.1 (THO complex subunit 2-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 103 bits (258), Expect = 2.14e-23
Identity = 54/94 (57.45%), Postives = 67/94 (71.28%), Query Frame = 0


Query: 1   MVSKQFDRWHGTLLQYVEFLSTAVVHLYLLHLEDYAHV-----SLSYDFCFLGIVAFIIY 60
           MVS+QFDR HGTLLQYVEFLS+AV          YAH+      L++ +     VAF++Y
Sbjct: 798 MVSEQFDRCHGTLLQYVEFLSSAVTPA-----SAYAHLIPSLNELAHRYHLDPEVAFLMY 857

Query: 61  RPMMRLFKCQGGSNIFWPLNGNDANFVGNRFDLD 89
           RP+MRLFKCQGGS+IFWPL+GNDAN  GN  D++
Sbjct: 858 RPIMRLFKCQGGSDIFWPLDGNDANVAGNNSDME 886

[Close]

BLAST of CsGy1G014470 vs. NCBI nr
Match: XP_038907239.1 (THO complex subunit 2 [Benincasa hispida])

HSP 1 Score: 103 bits (257), Expect = 2.92e-23
Identity = 63/110 (57.27%), Postives = 74/110 (67.27%), Query Frame = 0


Query: 1   MVSKQFDRWHGTLLQYVEFLSTAVV----HLYLL-HLEDYAHV-SLSYDFCFLGIVAFII 60
           MVS+QFDR HGTLLQYVEFLS+AV     +  L+  L D AH+  L  +      VAF+I
Sbjct: 798 MVSEQFDRCHGTLLQYVEFLSSAVTPASAYAQLIPSLNDLAHLYHLDPE------VAFLI 857

Query: 61  YRPMMRLFKCQGGSNIFWPLNGNDANFVGNRFDL-----------DLGSL 93
           +RP+MRLFKCQGGS+IFWPL+GNDAN VGN  DL           DLGSL
Sbjct: 858 FRPIMRLFKCQGGSDIFWPLDGNDANVVGNNSDLEPAECSADVVLDLGSL 901

[Close]

BLAST of CsGy1G014470 vs. ExPASy TrEMBL
Match: A0A0A0LY71 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G159090 PE=4 SV=1)

HSP 1 Score: 193 bits (490), Expect = 2.43e-62
Identity = 91/93 (97.85%), Postives = 92/93 (98.92%), Query Frame = 0


Query: 1  MVSKQFDRWHGTLLQYVEFLSTAVVHLYLLHLEDYAHVSLSYDFCFLGIVAFIIYRPMMR 60
          MVSKQFDRWHGTLLQYVEFLSTAVVHLYLL LEDYAHVSLSYDFCFLGIV+FIIYRPMMR
Sbjct: 1  MVSKQFDRWHGTLLQYVEFLSTAVVHLYLLDLEDYAHVSLSYDFCFLGIVSFIIYRPMMR 60

Query: 61 LFKCQGGSNIFWPLNGNDANFVGNRFDLDLGSL 93
          LFKCQGGSNIFWPLNGNDANFVGNRFDLDLGSL
Sbjct: 61 LFKCQGGSNIFWPLNGNDANFVGNRFDLDLGSL 93

[Close]

BLAST of CsGy1G014470 vs. ExPASy TrEMBL
Match: A0A1S3CSX0 (THO complex subunit 2 OS=Cucumis melo OX=3656 GN=LOC103504529 PE=3 SV=1)

HSP 1 Score: 104 bits (259), Expect = 7.60e-24
Identity = 61/109 (55.96%), Postives = 71/109 (65.14%), Query Frame = 0


Query: 1   MVSKQFDRWHGTLLQYVEFLSTAVVHLYLLHLEDYAHV-----SLSYDFCFLGIVAFIIY 60
           MVS+QFDR HGTLLQYVEFL+TAV          YA +      L++ +     VAF+IY
Sbjct: 798 MVSEQFDRCHGTLLQYVEFLTTAVTPA-----SAYAQLIPSLNELAHLYHLDPEVAFLIY 857

Query: 61  RPMMRLFKCQGGSNIFWPLNGNDANFVGNRFDL-----------DLGSL 93
           RP+MRLFKCQGGS+IFWPL+GNDAN VGN  DL           DLGSL
Sbjct: 858 RPIMRLFKCQGGSDIFWPLDGNDANVVGNSSDLEPAECPGDVVLDLGSL 901

[Close]

BLAST of CsGy1G014470 vs. ExPASy TrEMBL
Match: A0A6J1K3X2 (THO complex subunit 2 OS=Cucurbita maxima OX=3661 GN=LOC111489825 PE=3 SV=1)

HSP 1 Score: 103 bits (258), Expect = 1.04e-23
Identity = 54/94 (57.45%), Postives = 67/94 (71.28%), Query Frame = 0


Query: 1   MVSKQFDRWHGTLLQYVEFLSTAVVHLYLLHLEDYAHV-----SLSYDFCFLGIVAFIIY 60
           MVS+QFDR HGTLLQYVEFLS+AV          YAH+      L++ +     VAF++Y
Sbjct: 669 MVSEQFDRCHGTLLQYVEFLSSAVTPA-----SAYAHLIPSLNELAHRYHLDPEVAFLMY 728

Query: 61  RPMMRLFKCQGGSNIFWPLNGNDANFVGNRFDLD 89
           RP+MRLFKCQGGS+IFWPL+GNDAN  GN  D++
Sbjct: 729 RPIMRLFKCQGGSDIFWPLDGNDANVAGNNSDME 757

[Close]

BLAST of CsGy1G014470 vs. ExPASy TrEMBL
Match: A0A6J1JUH5 (THO complex subunit 2 OS=Cucurbita maxima OX=3661 GN=LOC111489825 PE=3 SV=1)

HSP 1 Score: 103 bits (258), Expect = 1.04e-23
Identity = 54/94 (57.45%), Postives = 67/94 (71.28%), Query Frame = 0


Query: 1   MVSKQFDRWHGTLLQYVEFLSTAVVHLYLLHLEDYAHV-----SLSYDFCFLGIVAFIIY 60
           MVS+QFDR HGTLLQYVEFLS+AV          YAH+      L++ +     VAF++Y
Sbjct: 798 MVSEQFDRCHGTLLQYVEFLSSAVTPA-----SAYAHLIPSLNELAHRYHLDPEVAFLMY 857

Query: 61  RPMMRLFKCQGGSNIFWPLNGNDANFVGNRFDLD 89
           RP+MRLFKCQGGS+IFWPL+GNDAN  GN  D++
Sbjct: 858 RPIMRLFKCQGGSDIFWPLDGNDANVAGNNSDME 886

[Close]

BLAST of CsGy1G014470 vs. ExPASy TrEMBL
Match: A0A5D3CW70 (THO complex subunit 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold663G00420 PE=4 SV=1)

HSP 1 Score: 102 bits (255), Expect = 2.60e-23
Identity = 60/109 (55.05%), Postives = 70/109 (64.22%), Query Frame = 0


Query: 1   MVSKQFDRWHGTLLQYVEFLSTAVVHLYLLHLEDYAHV-----SLSYDFCFLGIVAFIIY 60
           MVS+QFDR HGTLLQYVEFL+TAV          YA +      L++ +     V F+IY
Sbjct: 116 MVSEQFDRCHGTLLQYVEFLTTAVTPA-----SAYAQLIPSLNELAHLYHLDPEVGFLIY 175

Query: 61  RPMMRLFKCQGGSNIFWPLNGNDANFVGNRFDL-----------DLGSL 93
           RP+MRLFKCQGGS+IFWPL+GNDAN VGN  DL           DLGSL
Sbjct: 176 RPIMRLFKCQGGSDIFWPLDGNDANVVGNSSDLEPAECPGDVVLDLGSL 219

[Close]

BLAST of CsGy1G014470 vs. TAIR 10
Match: AT1G24706.1 (THO2 )

HSP 1 Score: 64.3 bits (155), Expect = 5.9e-11
Identity = 33/79 (41.77%), Postives = 50/79 (63.29%), Query Frame = 0


Query: 1   MVSKQFDRWHGTLLQYVEFLSTAVVHLYLLHLEDYAHVSLSYDFCFLGIVAFIIYRPMMR 60
           MV++QFDR HG LLQYV+FLS+AV           +   L + +     VAF+++RP+MR
Sbjct: 790 MVTEQFDRCHGILLQYVDFLSSAVSPTTAYARLVPSLDELVHTYHLEAEVAFLVFRPVMR 849

Query: 61  LFKCQGGSNIFWPLNGNDA 80
           LFKC+   ++ WPL+  ++
Sbjct: 850 LFKCRRNGDVSWPLDSGES 868

[Close]

BLAST of CsGy1G014470 vs. TAIR 10
Match: AT1G24706.2 (THO2 )

HSP 1 Score: 64.3 bits (155), Expect = 5.9e-11
Identity = 33/79 (41.77%), Postives = 50/79 (63.29%), Query Frame = 0


Query: 1   MVSKQFDRWHGTLLQYVEFLSTAVVHLYLLHLEDYAHVSLSYDFCFLGIVAFIIYRPMMR 60
           MV++QFDR HG LLQYV+FLS+AV           +   L + +     VAF+++RP+MR
Sbjct: 790 MVTEQFDRCHGILLQYVDFLSSAVSPTTAYARLVPSLDELVHTYHLEAEVAFLVFRPVMR 849

Query: 61  LFKCQGGSNIFWPLNGNDA 80
           LFKC+   ++ WPL+  ++
Sbjct: 850 LFKCRRNGDVSWPLDSGES 868

The following BLAST results are available for this feature:

BLAST of CsGy1G014470 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
F4IAT2	8.4e-10	41.77	THO complex subunit 2 OS=Arabidopsis thaliana OX=3702 GN=THO2 PE=1 SV=1	[more]

BLAST of CsGy1G014470 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN64916.1	5.02e-62	97.85	hypothetical protein Csa_022735 [Cucumis sativus]	[more]
XP_008467094.1	1.57e-23	55.96	PREDICTED: THO complex subunit 2 [Cucumis melo]	[more]
XP_022994003.1	2.14e-23	57.45	THO complex subunit 2-like isoform X2 [Cucurbita maxima]	[more]
XP_022994002.1	2.14e-23	57.45	THO complex subunit 2-like isoform X1 [Cucurbita maxima]	[more]
XP_038907239.1	2.92e-23	57.27	THO complex subunit 2 [Benincasa hispida]	[more]

BLAST of CsGy1G014470 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LY71	2.43e-62	97.85	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G159090 PE=4 SV=1	[more]
A0A1S3CSX0	7.60e-24	55.96	THO complex subunit 2 OS=Cucumis melo OX=3656 GN=LOC103504529 PE=3 SV=1	[more]
A0A6J1K3X2	1.04e-23	57.45	THO complex subunit 2 OS=Cucurbita maxima OX=3661 GN=LOC111489825 PE=3 SV=1	[more]
A0A6J1JUH5	1.04e-23	57.45	THO complex subunit 2 OS=Cucurbita maxima OX=3661 GN=LOC111489825 PE=3 SV=1	[more]
A0A5D3CW70	2.60e-23	55.05	THO complex subunit 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold66...	[more]

BLAST of CsGy1G014470 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G24706.1	5.9e-11	41.77	THO2	[more]
AT1G24706.2	5.9e-11	41.77	THO2	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR040007	THO complex subunit 2	PANTHER	PTHR21597	THO2 PROTEIN	coord: 1..75
None	No IPR available	PANTHER	PTHR21597:SF0	THO COMPLEX SUBUNIT 2	coord: 1..75

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy1G014470.2	CsGy1G014470.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006406	mRNA export from nucleus
biological_process	GO:0006397	mRNA processing
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0000445	THO complex part of transcription export complex
cellular_component	GO:0000347	THO complex
molecular_function	GO:0003729	mRNA binding