CsGy1G013980 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy1G013980
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	Cyclin-dependent kinases regulatory subunit
Location	Gy14Chr1: 9600271 .. 9601605 (-)
RNA-Seq Expression	CsGy1G013980
Synteny	CsGy1G013980

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAATTTGAAATTCAAACGGAGAAGCTCCACAAATTAAATCATTATTAAATTACTAAAAAATAATAAACAACCTTCCTATAAATTTACATTTTTAACCCCTCAACTTTCTATATTCTTCTCCCTTTCCCAAAATTCAACCCACTATTTCAACTTCATCGTCTCACTTTCCCCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCATCGCTCCTCCAATTTCTGGAATCCATTTCTCCAATTCTTTTCCATTTTCTTCAGATCAAAACAAGCCCGACCGACTTTTTTCTCTCTTGTTCGGTGCGATGGGTCAGATTCAGTACTCTGAGAAGTACTTTGATGATATCTATGAGTATAGGTCTGAGATTTCTCTTCGATGGTTTTTTTCATCGACATGGTTTGATTCTCATGGGGTTTGTTTTTGTTTTTTTTTTCTTTTTTGTTGATGTTTGTTGTAGGCATGTGGTGCTTACTCCTGAAGTGGCGAAACTTCTCCCCAAGAATCGCCTTCTTTCTGAAGTAAGTATTTCATGATTCTTCTCTATAATCATTATTTCTTGGGTCGAATCCTGTTTTGATAGTCGGAAACGAACTAAATTGGAAGTGGAAGAGATTTCTCTCATAATCATCGGCTGCTTTCAATGTGATTGTGCGATATAATCTGAATACATTTGAGATCTGTGTAGTTTGATTATGCAATAGATTGATTGCGTGATGATTAATCTGAATACATTTGAGATCTTTGTAGTTGGATTATGCAATAGATTGATTGCGTGATGATTAATCTGAAGTAAATATACCATAATTTCTTGTGTGAAATCCTGTTACGCTAATTGAAAAGAAAATGAACTAAAAAATTGAAAGAGATCTCTCTCATAATCTGAATACCTTTAAGATGAAGTGATGGAATTTGATGTTGATGATGAACAGAATGAATGGAGAGCGATCGGTGTTCAACAAAGCCGTGGATGGGTTCATTATGCAATTCATCGCCCAGAGCCACACATAATGTTGTTCAGAAGGCCACTCAACTATCAACAGCAGCAAGAGAATCAAGCACAACAGCAGATTTTGGCCAAGTAAATTGGTTTATTGTCCTTTTTTTTCCTTTAGACACACTATAATGAGAAATATCTCACTACAAAACATAAAAAAATTAAGTGTTTGTGGTTTGTTGTGTGGTGTAGTTTCCTTCTCCAATTTGGAGAAGCTTTGTGGCCCAGTTAGATCTTTGTCATAGTCATTAATCAATTCCCCACCATTGTTCATGAATTTGTGGTTTTAATTTGCTTTTGATATAAGCGTGGTTCTTATCTTCTCTTCTTCTTGGCTGCCATCTC

mRNA sequence

AAATTTGAAATTCAAACGGAGAAGCTCCACAAATTAAATCATTATTAAATTACTAAAAAATAATAAACAACCTTCCTATAAATTTACATTTTTAACCCCTCAACTTTCTATATTCTTCTCCCTTTCCCAAAATTCAACCCACTATTTCAACTTCATCGTCTCACTTTCCCCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCATCGCTCCTCCAATTTCTGGAATCCATTTCTCCAATTCTTTTCCATTTTCTTCAGATCAAAACAAGCCCGACCGACTTTTTTCTCTCTTGTTCGGTGCGATGGGTCAGATTCAGTACTCTGAGAAGTACTTTGATGATATCTATGAGTATAGGTCTGAGATTTCTCTTCGATGGTTTTTTTCATCGACATGGTTTGATTCTCATGGGGTTTGTTTTTGTTTTTTTTTTCTTTTTTGTTGATGTTTGTTGTAGGCATGTGGTGCTTACTCCTGAAGTGGCGAAACTTCTCCCCAAGAATCGCCTTCTTTCTGAAAATGAATGGAGAGCGATCGGTGTTCAACAAAGCCGTGGATGGGTTCATTATGCAATTCATCGCCCAGAGCCACACATAATGTTGTTCAGAAGGCCACTCAACTATCAACAGCAGCAAGAGAATCAAGCACAACAGCAGATTTTGGCCAAGTAAATTGGTTTATTGTCCTTTTTTTTCCTTTAGACACACTATAATGAGAAATATCTCACTACAAAACATAAAAAAATTAAGTGTTTGTGGTTTGTTGTGTGGTGTAGTTTCCTTCTCCAATTTGGAGAAGCTTTGTGGCCCAGTTAGATCTTTGTCATAGTCATTAATCAATTCCCCACCATTGTTCATGAATTTGTGGTTTTAATTTGCTTTTGATATAAGCGTGGTTCTTATCTTCTCTTCTTCTTGGCTGCCATCTC

Coding sequence (CDS)

ATGATATCTATGAGTATAGGTCTGAGATTTCTCTTCGATGGTTTTTTTCATCGACATGGTTTGATTCTCATGGGGTTTGTTTTTGTTTTTTTTTTCTTTTTTGTTGATGTTTGTTGTAGGCATGTGGTGCTTACTCCTGAAGTGGCGAAACTTCTCCCCAAGAATCGCCTTCTTTCTGAAAATGAATGGAGAGCGATCGGTGTTCAACAAAGCCGTGGATGGGTTCATTATGCAATTCATCGCCCAGAGCCACACATAATGTTGTTCAGAAGGCCACTCAACTATCAACAGCAGCAAGAGAATCAAGCACAACAGCAGATTTTGGCCAAGTAA

Protein sequence

MISMSIGLRFLFDGFFHRHGLILMGFVFVFFFFFVDVCCRHVVLTPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRPEPHIMLFRRPLNYQQQQENQAQQQILAK*

Homology

[Close]

BLAST of CsGy1G013980 vs. ExPASy Swiss-Prot
Match: O23249 (Cyclin-dependent kinases regulatory subunit 1 OS=Arabidopsis thaliana OX=3702 GN=CKS1 PE=1 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 1.6e-31
Identity = 63/69 (91.30%), Postives = 66/69 (95.65%), Query Frame = 0


Query: 40  RHVVLTPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRPEPHIMLFRRPLNYQQQQ 99
           RHVVL PEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYA+HRPEPHIMLFRRPLNYQQQQ
Sbjct: 18  RHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAVHRPEPHIMLFRRPLNYQQQQ 77

Query: 100 ENQAQQQIL 109
           ENQAQ  ++
Sbjct: 78  ENQAQNMLV 86

[Close]

BLAST of CsGy1G013980 vs. ExPASy Swiss-Prot
Match: A2XCH8 (Cyclin-dependent kinases regulatory subunit 1 OS=Oryza sativa subsp. indica OX=39946 GN=CKS1 PE=2 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 7.3e-29
Identity = 60/64 (93.75%), Postives = 61/64 (95.31%), Query Frame = 0


Query: 40  RHVVLTPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRPEPHIMLFRRPLNYQQQQ 99
           RHVVL PEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRPEPHIMLFRRPLN+QQQQ
Sbjct: 18  RHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRPEPHIMLFRRPLNFQQQQ 77

Query: 100 ENQA 104
           E  A
Sbjct: 78  EAAA 81

[Close]

BLAST of CsGy1G013980 vs. ExPASy Swiss-Prot
Match: Q6PS57 (Cyclin-dependent kinases regulatory subunit 1 OS=Oryza sativa subsp. japonica OX=39947 GN=CKS1 PE=2 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 7.3e-29
Identity = 60/64 (93.75%), Postives = 61/64 (95.31%), Query Frame = 0


Query: 40  RHVVLTPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRPEPHIMLFRRPLNYQQQQ 99
           RHVVL PEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRPEPHIMLFRRPLN+QQQQ
Sbjct: 18  RHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRPEPHIMLFRRPLNFQQQQ 77

Query: 100 ENQA 104
           E  A
Sbjct: 78  EAAA 81

[Close]

BLAST of CsGy1G013980 vs. ExPASy Swiss-Prot
Match: Q9SJJ5 (Cyclin-dependent kinases regulatory subunit 2 OS=Arabidopsis thaliana OX=3702 GN=CKS2 PE=1 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 1.8e-27
Identity = 56/63 (88.89%), Postives = 60/63 (95.24%), Query Frame = 0


Query: 40  RHVVLTPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRPEPHIMLFRRPLNYQQQQ 99
           RHVVL PEVAKLLPKNR+LSE+EWRAIGVQQSRGWVHYAIHRPEPHIMLFRRPLNYQQ+ 
Sbjct: 18  RHVVLPPEVAKLLPKNRILSESEWRAIGVQQSRGWVHYAIHRPEPHIMLFRRPLNYQQEH 77

Query: 100 ENQ 103
           + Q
Sbjct: 78  QAQ 80

[Close]

BLAST of CsGy1G013980 vs. ExPASy Swiss-Prot
Match: P55933 (Probable cyclin-dependent kinases regulatory subunit OS=Physarum polycephalum OX=5791 PE=1 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 4.7e-20
Identity = 41/52 (78.85%), Postives = 48/52 (92.31%), Query Frame = 0


Query: 40 RHVVLTPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRPEPHIMLFRR 92
          RHV+L P+VAK +PKNRLLSE EWR +GVQQS+GWVHYA+HRPEPHI+LFRR
Sbjct: 20 RHVILPPDVAKEIPKNRLLSEGEWRGLGVQQSQGWVHYALHRPEPHILLFRR 71

[Close]

BLAST of CsGy1G013980 vs. NCBI nr
Match: XP_011654109.1 (cyclin-dependent kinases regulatory subunit 1 [Cucumis sativus] >XP_016903015.1 PREDICTED: cyclin-dependent kinases regulatory subunit 1 isoform X2 [Cucumis melo] >KGN64861.1 hypothetical protein Csa_022815 [Cucumis sativus])

HSP 1 Score: 148 bits (374), Expect = 4.27e-44
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 0


Query: 40  RHVVLTPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRPEPHIMLFRRPLNYQQQQ 99
           RHVVLTPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRPEPHIMLFRRPLNYQQQQ
Sbjct: 18  RHVVLTPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRPEPHIMLFRRPLNYQQQQ 77

Query: 100 ENQAQQQILAK 110
           ENQAQQQILAK
Sbjct: 78  ENQAQQQILAK 88

[Close]

BLAST of CsGy1G013980 vs. NCBI nr
Match: XP_022964884.1 (cyclin-dependent kinases regulatory subunit 1-like [Cucurbita moschata] >XP_022964885.1 cyclin-dependent kinases regulatory subunit 1-like [Cucurbita moschata] >XP_022970358.1 cyclin-dependent kinases regulatory subunit 1-like [Cucurbita maxima] >XP_022970359.1 cyclin-dependent kinases regulatory subunit 1-like [Cucurbita maxima] >XP_023519916.1 cyclin-dependent kinases regulatory subunit 1-like [Cucurbita pepo subsp. pepo] >XP_023519917.1 cyclin-dependent kinases regulatory subunit 1-like [Cucurbita pepo subsp. pepo] >KAG6583592.1 Cyclin-dependent kinases regulatory subunit 2, partial [Cucurbita argyrosperma subsp. sororia] >KAG7019293.1 Cyclin-dependent kinases regulatory subunit 2 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 147 bits (371), Expect = 1.22e-43
Identity = 70/71 (98.59%), Postives = 71/71 (100.00%), Query Frame = 0


Query: 40  RHVVLTPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRPEPHIMLFRRPLNYQQQQ 99
           RHVVLTP+VAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRPEPHIMLFRRPLNYQQQQ
Sbjct: 18  RHVVLTPDVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRPEPHIMLFRRPLNYQQQQ 77

Query: 100 ENQAQQQILAK 110
           ENQAQQQILAK
Sbjct: 78  ENQAQQQILAK 88

[Close]

BLAST of CsGy1G013980 vs. NCBI nr
Match: XP_016903011.1 (PREDICTED: cyclin-dependent kinases regulatory subunit 1 isoform X1 [Cucumis melo])

HSP 1 Score: 147 bits (370), Expect = 2.50e-43
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 0


Query: 40  RHVVLTPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRPEPHIMLFRRPLNYQQQQ 99
           RHVVLTPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRPEPHIMLFRRPLNYQQQQ
Sbjct: 18  RHVVLTPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRPEPHIMLFRRPLNYQQQQ 77

Query: 100 ENQAQQQILA 109
           ENQAQQQILA
Sbjct: 78  ENQAQQQILA 87

[Close]

BLAST of CsGy1G013980 vs. NCBI nr
Match: XP_038894383.1 (cyclin-dependent kinases regulatory subunit 1 [Benincasa hispida])

HSP 1 Score: 146 bits (368), Expect = 3.51e-43
Identity = 70/71 (98.59%), Postives = 70/71 (98.59%), Query Frame = 0


Query: 40  RHVVLTPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRPEPHIMLFRRPLNYQQQQ 99
           RHVVL PEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRPEPHIMLFRRPLNYQQQQ
Sbjct: 18  RHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRPEPHIMLFRRPLNYQQQQ 77

Query: 100 ENQAQQQILAK 110
           ENQAQQQILAK
Sbjct: 78  ENQAQQQILAK 88

[Close]

BLAST of CsGy1G013980 vs. NCBI nr
Match: GAV69670.1 (CKS domain-containing protein [Cephalotus follicularis])

HSP 1 Score: 145 bits (366), Expect = 7.08e-43
Identity = 69/71 (97.18%), Postives = 70/71 (98.59%), Query Frame = 0


Query: 40  RHVVLTPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRPEPHIMLFRRPLNYQQQQ 99
           RHVVLTPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRPEPHIMLFRRPLNYQQQQ
Sbjct: 18  RHVVLTPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRPEPHIMLFRRPLNYQQQQ 77

Query: 100 ENQAQQQILAK 110
           ENQAQQ +LAK
Sbjct: 78  ENQAQQNMLAK 88

[Close]

BLAST of CsGy1G013980 vs. ExPASy TrEMBL
Match: A0A0A0LY04 (Cyclin-dependent kinases regulatory subunit OS=Cucumis sativus OX=3659 GN=Csa_1G132710 PE=3 SV=1)

HSP 1 Score: 148 bits (374), Expect = 2.07e-44
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 0


Query: 40  RHVVLTPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRPEPHIMLFRRPLNYQQQQ 99
           RHVVLTPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRPEPHIMLFRRPLNYQQQQ
Sbjct: 18  RHVVLTPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRPEPHIMLFRRPLNYQQQQ 77

Query: 100 ENQAQQQILAK 110
           ENQAQQQILAK
Sbjct: 78  ENQAQQQILAK 88

[Close]

BLAST of CsGy1G013980 vs. ExPASy TrEMBL
Match: A0A1S4E4W6 (Cyclin-dependent kinases regulatory subunit OS=Cucumis melo OX=3656 GN=LOC103500769 PE=3 SV=1)

HSP 1 Score: 148 bits (374), Expect = 2.07e-44
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 0


Query: 40  RHVVLTPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRPEPHIMLFRRPLNYQQQQ 99
           RHVVLTPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRPEPHIMLFRRPLNYQQQQ
Sbjct: 18  RHVVLTPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRPEPHIMLFRRPLNYQQQQ 77

Query: 100 ENQAQQQILAK 110
           ENQAQQQILAK
Sbjct: 78  ENQAQQQILAK 88

[Close]

BLAST of CsGy1G013980 vs. ExPASy TrEMBL
Match: A0A6J1I3M7 (Cyclin-dependent kinases regulatory subunit OS=Cucurbita maxima OX=3661 GN=LOC111469347 PE=3 SV=1)

HSP 1 Score: 147 bits (371), Expect = 5.93e-44
Identity = 70/71 (98.59%), Postives = 71/71 (100.00%), Query Frame = 0


Query: 40  RHVVLTPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRPEPHIMLFRRPLNYQQQQ 99
           RHVVLTP+VAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRPEPHIMLFRRPLNYQQQQ
Sbjct: 18  RHVVLTPDVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRPEPHIMLFRRPLNYQQQQ 77

Query: 100 ENQAQQQILAK 110
           ENQAQQQILAK
Sbjct: 78  ENQAQQQILAK 88

[Close]

BLAST of CsGy1G013980 vs. ExPASy TrEMBL
Match: A0A6J1HM34 (Cyclin-dependent kinases regulatory subunit OS=Cucurbita moschata OX=3662 GN=LOC111464859 PE=3 SV=1)

HSP 1 Score: 147 bits (371), Expect = 5.93e-44
Identity = 70/71 (98.59%), Postives = 71/71 (100.00%), Query Frame = 0


Query: 40  RHVVLTPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRPEPHIMLFRRPLNYQQQQ 99
           RHVVLTP+VAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRPEPHIMLFRRPLNYQQQQ
Sbjct: 18  RHVVLTPDVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRPEPHIMLFRRPLNYQQQQ 77

Query: 100 ENQAQQQILAK 110
           ENQAQQQILAK
Sbjct: 78  ENQAQQQILAK 88

[Close]

BLAST of CsGy1G013980 vs. ExPASy TrEMBL
Match: A0A1S4E453 (Cyclin-dependent kinases regulatory subunit OS=Cucumis melo OX=3656 GN=LOC103500769 PE=3 SV=1)

HSP 1 Score: 147 bits (370), Expect = 1.21e-43
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 0


Query: 40  RHVVLTPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRPEPHIMLFRRPLNYQQQQ 99
           RHVVLTPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRPEPHIMLFRRPLNYQQQQ
Sbjct: 18  RHVVLTPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRPEPHIMLFRRPLNYQQQQ 77

Query: 100 ENQAQQQILA 109
           ENQAQQQILA
Sbjct: 78  ENQAQQQILA 87

[Close]

BLAST of CsGy1G013980 vs. TAIR 10
Match: AT2G27960.1 (cyclin-dependent kinase-subunit 1 )

HSP 1 Score: 136.7 bits (343), Expect = 1.1e-32
Identity = 63/69 (91.30%), Postives = 66/69 (95.65%), Query Frame = 0


Query: 40  RHVVLTPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRPEPHIMLFRRPLNYQQQQ 99
           RHVVL PEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYA+HRPEPHIMLFRRPLNYQQQQ
Sbjct: 18  RHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAVHRPEPHIMLFRRPLNYQQQQ 77

Query: 100 ENQAQQQIL 109
           ENQAQ  ++
Sbjct: 78  ENQAQNMLV 86

[Close]

BLAST of CsGy1G013980 vs. TAIR 10
Match: AT2G27970.1 (CDK-subunit 2 )

HSP 1 Score: 123.2 bits (308), Expect = 1.3e-28
Identity = 56/63 (88.89%), Postives = 60/63 (95.24%), Query Frame = 0


Query: 40  RHVVLTPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRPEPHIMLFRRPLNYQQQQ 99
           RHVVL PEVAKLLPKNR+LSE+EWRAIGVQQSRGWVHYAIHRPEPHIMLFRRPLNYQQ+ 
Sbjct: 18  RHVVLPPEVAKLLPKNRILSESEWRAIGVQQSRGWVHYAIHRPEPHIMLFRRPLNYQQEH 77

Query: 100 ENQ 103
           + Q
Sbjct: 78  QAQ 80

The following BLAST results are available for this feature:

BLAST of CsGy1G013980 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O23249	1.6e-31	91.30	Cyclin-dependent kinases regulatory subunit 1 OS=Arabidopsis thaliana OX=3702 GN...	[more]
A2XCH8	7.3e-29	93.75	Cyclin-dependent kinases regulatory subunit 1 OS=Oryza sativa subsp. indica OX=3...	[more]
Q6PS57	7.3e-29	93.75	Cyclin-dependent kinases regulatory subunit 1 OS=Oryza sativa subsp. japonica OX...	[more]
Q9SJJ5	1.8e-27	88.89	Cyclin-dependent kinases regulatory subunit 2 OS=Arabidopsis thaliana OX=3702 GN...	[more]
P55933	4.7e-20	78.85	Probable cyclin-dependent kinases regulatory subunit OS=Physarum polycephalum OX...	[more]

BLAST of CsGy1G013980 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011654109.1	4.27e-44	100.00	cyclin-dependent kinases regulatory subunit 1 [Cucumis sativus] >XP_016903015.1 ...	[more]
XP_022964884.1	1.22e-43	98.59	cyclin-dependent kinases regulatory subunit 1-like [Cucurbita moschata] >XP_0229...	[more]
XP_016903011.1	2.50e-43	100.00	PREDICTED: cyclin-dependent kinases regulatory subunit 1 isoform X1 [Cucumis mel...	[more]
XP_038894383.1	3.51e-43	98.59	cyclin-dependent kinases regulatory subunit 1 [Benincasa hispida]	[more]
GAV69670.1	7.08e-43	97.18	CKS domain-containing protein [Cephalotus follicularis]	[more]

BLAST of CsGy1G013980 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LY04	2.07e-44	100.00	Cyclin-dependent kinases regulatory subunit OS=Cucumis sativus OX=3659 GN=Csa_1G...	[more]
A0A1S4E4W6	2.07e-44	100.00	Cyclin-dependent kinases regulatory subunit OS=Cucumis melo OX=3656 GN=LOC103500...	[more]
A0A6J1I3M7	5.93e-44	98.59	Cyclin-dependent kinases regulatory subunit OS=Cucurbita maxima OX=3661 GN=LOC11...	[more]
A0A6J1HM34	5.93e-44	98.59	Cyclin-dependent kinases regulatory subunit OS=Cucurbita moschata OX=3662 GN=LOC...	[more]
A0A1S4E453	1.21e-43	100.00	Cyclin-dependent kinases regulatory subunit OS=Cucumis melo OX=3656 GN=LOC103500...	[more]

BLAST of CsGy1G013980 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G27960.1	1.1e-32	91.30	cyclin-dependent kinase-subunit 1	[more]
AT2G27970.1	1.3e-28	88.89	CDK-subunit 2	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000789	Cyclin-dependent kinase, regulatory subunit	PRINTS	PR00296	CYCLINKINASE	coord: 77..91 score: 76.41 coord: 62..76 score: 75.9 coord: 40..54 score: 56.41
IPR000789	Cyclin-dependent kinase, regulatory subunit	SMART	SM01084	CKS_2	coord: 40..94 e-value: 1.3E-28 score: 111.0
IPR000789	Cyclin-dependent kinase, regulatory subunit	PFAM	PF01111	CKS	coord: 40..92 e-value: 1.8E-24 score: 85.7
IPR036858	Cyclin-dependent kinase, regulatory subunit superfamily	GENE3D	3.30.170.10		coord: 36..106 e-value: 1.4E-28 score: 100.8
IPR036858	Cyclin-dependent kinase, regulatory subunit superfamily	SUPERFAMILY	55637	Cell cycle regulatory proteins	coord: 40..105
None	No IPR available	PANTHER	PTHR23415	CYCLIN-DEPENDENT KINASES REGULATORY SUBUNIT/60S RIBOSOME SUBUNIT BIOGENESIS PROTEIN NIP7	coord: 34..109
None	No IPR available	PANTHER	PTHR23415:SF37	CYCLIN-DEPENDENT KINASES REGULATORY SUBUNIT	coord: 34..109

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy1G013980.2	CsGy1G013980.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0051301	cell division
biological_process	GO:0045737	positive regulation of cyclin-dependent protein serine/threonine kinase activity
biological_process	GO:0007346	regulation of mitotic cell cycle
cellular_component	GO:0000307	cyclin-dependent protein kinase holoenzyme complex
cellular_component	GO:0019005	SCF ubiquitin ligase complex
molecular_function	GO:0061575	cyclin-dependent protein serine/threonine kinase activator activity
molecular_function	GO:0042393	histone binding
molecular_function	GO:0016301	kinase activity
molecular_function	GO:0019901	protein kinase binding
molecular_function	GO:0043130	ubiquitin binding
molecular_function	GO:0016538	cyclin-dependent protein serine/threonine kinase regulator activity