CsGy1G010840 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy1G010840
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	nuclear transport factor 2
Location	Gy14Chr1: 6831229 .. 6832670 (-)
RNA-Seq Expression	CsGy1G010840
Synteny	CsGy1G010840

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATAAAATTACATAGGCAATTAAAAAGAGTAGAAAAGTGAAGTGATGCCTTCATTTTGATACCCCTTTTACCCAATATCTCCTTTATTCCTCTCTTTGCGTACATACACAGCGATTTCAATTATTCCCTCTTTTGCTCACTCTCTCAAATGACTCCCCTTTACGCTTCTTCCTCTTCACTACTCAACCACATACCCCAACGCCATATCAGTAATTACAAATCTCTCTTCCTACATGCACTTCACATTATAAACAATAAACCAACATTATTATTGTATAATCACTAGCTAGTAGAAGCAAAAGGGTTTGTATTGTTGGTTTTGTTAAAGAGAATTAGAGGGAATGGAAGAAGAGGGTGATATAATTGGGAAAGCTTTTGTGGAACATTACTACCAATTGTTTGATAATGAAAGAGCTTCTCTTTCATCTCTGTATCAGCCTGACTCGATGCTCACTTTTGAAGGGCAACAAATTTTAGGAGTTCATGATATCTCCTCAAAGCTTCAGCAATTGCCATTTGAACGTTGTCGACATGTGGTTAGCACTATAGACACGCAGCCCTCCTCCGTCCACGGCTCCATCCTCATCTTCGTCAGCGGTAGCATTGAGATACCTGAAGAAGAACACCCACTCAGATTCAGTCAGGTTTATGGTTACCCTATCCATTTATACTCTTTAAAACACTTGTTTAACATAATTGTTCTTACTTCATTATAATCACTACCCTTTTTGTAATTACTTGGTTTCTTTTTAAAGAAATAAAATTAATTTTTTTAAAAGAATTCAAATCTTATACTTAATGTGGGTTTGGTTTAACGTTTAAGGTTTAAGTACAAATGTTTTTTTTTTTTAAAAAAAAATCACATTAATTTTCATCTAATAAATTCAAATATATGTTTAAGAAAGGTTTAAATCAATATAAATGATTGAGAAAATAAGCAAATGCGAAAATGAAATAATGATGAGATTAGGCATTAGAAAGTTTGGTTTGGTTTTTATGAGAAATTGAAAATGGTTTGAAATTGGTTGGCAGATGTTTCACTTAGTACCATCACCAGAAGGCAACCTTTTCGTTCAGAATGACATATTTCGTCTCAATTATGGTTAGATGGTTGAGCCCTGAGGGTCCTTTCTCTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTGTAGTTTGTACCCACACACTACATTTCAACACATAAACGTTGTATTTTCATGGATTTTATTTTATATTTTGCTTCTTATACTATGACTTTATCGATGATAAAGATTAACAAGCAACTTCCACGACCCAACATTTTAAAATTTTCAATTGAAATTGTAGAAGGACCAAAACAGTTTCATAGTTTAAAATGTGGAAGTACATTTGGTTACCGCTAATTATTAATAATATTTATTGTTGTTTGATTACTAATTGATATTTATTGTTATCTAATTG

mRNA sequence

ATAAAATTACATAGGCAATTAAAAAGAGTAGAAAAGTGAAGTGATGCCTTCATTTTGATACCCCTTTTACCCAATATCTCCTTTATTCCTCTCTTTGCGTACATACACAGCGATTTCAATTATTCCCTCTTTTGCTCACTCTCTCAAATGACTCCCCTTTACGCTTCTTCCTCTTCACTACTCAACCACATACCCCAACGCCATATCAGTAATTACAAATCTCTCTTCCTACATGCACTTCACATTATAAACAATAAACCAACATTATTATTGTATAATCACTAGCTAGTAGAAGCAAAAGGGTTTGTATTGTTGGTTTTGTTAAAGAGAATTAGAGGGAATGGAAGAAGAGGGTGATATAATTGGGAAAGCTTTTGTGGAACATTACTACCAATTGTTTGATAATGAAAGAGCTTCTCTTTCATCTCTGTATCAGCCTGACTCGATGCTCACTTTTGAAGGGCAACAAATTTTAGGAGTTCATGATATCTCCTCAAAGCTTCAGCAATTGCCATTTGAACGTTGTCGACATGTGGTTAGCACTATAGACACGCAGCCCTCCTCCGTCCACGGCTCCATCCTCATCTTCGTCAGCGGTAGCATTGAGATACCTGAAGAAGAACACCCACTCAGATTCAGTCAGATGTTTCACTTAGTACCATCACCAGAAGGCAACCTTTTCGTTCAGAATGACATATTTCGTCTCAATTATGGTTAGATGGTTGAGCCCTGAGGGTCCTTTCTCTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTGTAGTTTGTACCCACACACTACATTTCAACACATAAACGTTGTATTTTCATGGATTTTATTTTATATTTTGCTTCTTATACTATGACTTTATCGATGATAAAGATTAACAAGCAACTTCCACGACCCAACATTTTAAAATTTTCAATTGAAATTGTAGAAGGACCAAAACAGTTTCATAGTTTAAAATGTGGAAGTACATTTGGTTACCGCTAATTATTAATAATATTTATTGTTGTTTGATTACTAATTGATATTTATTGTTATCTAATTG

Coding sequence (CDS)

ATGGAAGAAGAGGGTGATATAATTGGGAAAGCTTTTGTGGAACATTACTACCAATTGTTTGATAATGAAAGAGCTTCTCTTTCATCTCTGTATCAGCCTGACTCGATGCTCACTTTTGAAGGGCAACAAATTTTAGGAGTTCATGATATCTCCTCAAAGCTTCAGCAATTGCCATTTGAACGTTGTCGACATGTGGTTAGCACTATAGACACGCAGCCCTCCTCCGTCCACGGCTCCATCCTCATCTTCGTCAGCGGTAGCATTGAGATACCTGAAGAAGAACACCCACTCAGATTCAGTCAGATGTTTCACTTAGTACCATCACCAGAAGGCAACCTTTTCGTTCAGAATGACATATTTCGTCTCAATTATGGTTAG

Protein sequence

MEEEGDIIGKAFVEHYYQLFDNERASLSSLYQPDSMLTFEGQQILGVHDISSKLQQLPFERCRHVVSTIDTQPSSVHGSILIFVSGSIEIPEEEHPLRFSQMFHLVPSPEGNLFVQNDIFRLNYG*

Homology

[Close]

BLAST of CsGy1G010840 vs. ExPASy Swiss-Prot
Match: Q9C7F5 (Nuclear transport factor 2B OS=Arabidopsis thaliana OX=3702 GN=NTF2B PE=1 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 3.7e-37
Identity = 69/119 (57.98%), Postives = 90/119 (75.63%), Query Frame = 0


Query: 6   DIIGKAFVEHYYQLFDNERASLSSLYQPDSMLTFEGQQILGVHDISSKLQQLPFERCRHV 65
           D + KAFVEHYY  FD  R  L+ LYQ  SMLTFEGQ+I GV  I +KL  LPF++C+H 
Sbjct: 7   DAVSKAFVEHYYSTFDTNRVGLAGLYQEASMLTFEGQKIQGVQSIVAKLTSLPFQQCKHH 66

Query: 66  VSTIDTQPSSVHGSILIFVSGSIEIPEEEHPLRFSQMFHLVPSPEGNLFVQNDIFRLNY 125
           +ST+D QPS     +L+FVSG++++  EEH L+FSQMFHL+P+P+G+ +V NDIFRLNY
Sbjct: 67  ISTVDCQPSGPASGMLVFVSGNLQLAGEEHALKFSQMFHLMPTPQGSFYVFNDIFRLNY 125

[Close]

BLAST of CsGy1G010840 vs. ExPASy Swiss-Prot
Match: Q9XJ54 (Nuclear transport factor 2 OS=Oryza sativa subsp. japonica OX=39947 GN=NTF2 PE=2 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 3.1e-36
Identity = 71/122 (58.20%), Postives = 89/122 (72.95%), Query Frame = 0


Query: 4   EGDIIGKAFVEHYYQLFDNERASLSSLYQPDSMLTFEGQQILGVHDISSKLQQLPFERCR 63
           + D + KAFVEHYY+ FD  R +L SLYQ  SMLTFEGQQ LG   I+ KL  LPF +C 
Sbjct: 2   DADAVAKAFVEHYYRTFDTNRPALVSLYQDGSMLTFEGQQFLGAAAIAGKLGSLPFAQCH 61

Query: 64  HVVSTIDTQPSSVHGSILIFVSGSIEIPEEEHPLRFSQMFHLVPSPEGNLFVQNDIFRLN 123
           H ++T+D QPS   G +L+FVSGS+    +EHPL+FSQMF L+P+  GN +VQND+FRLN
Sbjct: 62  HDINTVDCQPSGPQGGMLVFVSGSLRTGPDEHPLKFSQMFQLLPA-GGNFYVQNDMFRLN 121

Query: 124 YG 126
           YG
Sbjct: 122 YG 122

[Close]

BLAST of CsGy1G010840 vs. ExPASy Swiss-Prot
Match: Q9FZK4 (Nuclear transport factor 2A OS=Arabidopsis thaliana OX=3702 GN=NTF2A PE=1 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 5.0e-34
Identity = 68/119 (57.14%), Postives = 89/119 (74.79%), Query Frame = 0


Query: 6   DIIGKAFVEHYYQLFDNERASLSSLYQPDSMLTFEGQQILGVHDISSKLQQLPFERCRHV 65
           D + KAFVEHYY  FD  R  L SLYQ  SMLTFEGQ+I G  +I +KL  LPF++C+H 
Sbjct: 4   DAVAKAFVEHYYSTFDANRPGLVSLYQEGSMLTFEGQKIQGSQNIVAKLTGLPFQQCKHN 63

Query: 66  VSTIDTQPSSVHGSILIFVSGSIEIPEEEHPLRFSQMFHLVPSPEGNLFVQNDIFRLNY 125
           ++T+D QPS   G +L+FVSG++++  E+H L+FSQMFHL+ S +GN +V NDIFRLNY
Sbjct: 64  ITTVDCQPSGPAGGMLVFVSGNLQLAGEQHALKFSQMFHLI-SNQGNYYVFNDIFRLNY 121

[Close]

BLAST of CsGy1G010840 vs. ExPASy Swiss-Prot
Match: Q10100 (Nuclear transport factor 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=ntf2 PE=3 SV=2)

HSP 1 Score: 124.0 bits (310), Expect = 1.2e-27
Identity = 57/114 (50.00%), Postives = 82/114 (71.93%), Query Frame = 0


Query: 12  FVEHYYQLFDNERASLSSLYQPDSMLTFEGQQILGVHDISSKLQQLPFERCRHVVSTIDT 71
           F + YYQ FD++R+ LSSLY+ +SML+FEG Q+ G   I  KL  LPF+R +H +ST+D 
Sbjct: 11  FTQFYYQTFDSDRSQLSSLYREESMLSFEGAQLQGTKAIVEKLVSLPFQRVQHRISTLDA 70

Query: 72  QPSSVHGSILIFVSGSIEIPEEEHPLRFSQMFHLVPSPEGNLFVQNDIFRLNYG 126
           QP+   GS+++ V+G + + EE+   R+SQ+FHLV +  GN +V ND+FRLNYG
Sbjct: 71  QPTGTTGSVIVMVTGELLLDEEQMAQRYSQVFHLV-NNNGNYYVLNDLFRLNYG 123

[Close]

BLAST of CsGy1G010840 vs. ExPASy Swiss-Prot
Match: Q96VN3 (Nuclear transport factor 2 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) OX=227321 GN=ntf2 PE=3 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 2.0e-27
Identity = 58/117 (49.57%), Postives = 78/117 (66.67%), Query Frame = 0


Query: 8   IGKAFVEHYYQLFDNERASLSSLYQPDSMLTFEGQQILGVHDISSKLQQLPFERCRHVVS 67
           I + FV  YYQ FD  RA L+ LY+  SMLTFE   I GV  I  KL  LPF++ +H VS
Sbjct: 7   IAQQFVTFYYQTFDGNRAGLAPLYRDHSMLTFETSAIQGVAGIIEKLTSLPFQKVQHQVS 66

Query: 68  TIDTQPSSVHGSILIFVSGSIEIPEEEHPLRFSQMFHLVPSPEGNLFVQNDIFRLNY 125
           T+D QPS  HG IL+ V+G++ + EE++P+ ++Q F L+P   G+ FV ND+FRL Y
Sbjct: 67  TLDAQPSGEHGGILVLVTGALLVDEEKNPMNYTQTFQLMPDGAGSYFVLNDVFRLIY 123

[Close]

BLAST of CsGy1G010840 vs. NCBI nr
Match: XP_004153658.1 (nuclear transport factor 2B [Cucumis sativus] >KGN64547.1 hypothetical protein Csa_013836 [Cucumis sativus])

HSP 1 Score: 257 bits (656), Expect = 2.50e-86
Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 0


Query: 1   MEEEGDIIGKAFVEHYYQLFDNERASLSSLYQPDSMLTFEGQQILGVHDISSKLQQLPFE 60
           MEEEGDIIGKAFVEHYYQLFDNERASLSSLYQPDSMLTFEGQQILGVHDISSKLQQLPFE
Sbjct: 1   MEEEGDIIGKAFVEHYYQLFDNERASLSSLYQPDSMLTFEGQQILGVHDISSKLQQLPFE 60

Query: 61  RCRHVVSTIDTQPSSVHGSILIFVSGSIEIPEEEHPLRFSQMFHLVPSPEGNLFVQNDIF 120
           RCRHVVSTIDTQPSSVHGSILIFVSGSIEIPEEEHPLRFSQMFHLVPSPEGNLFVQNDIF
Sbjct: 61  RCRHVVSTIDTQPSSVHGSILIFVSGSIEIPEEEHPLRFSQMFHLVPSPEGNLFVQNDIF 120

Query: 121 RLNYG 125
           RLNYG
Sbjct: 121 RLNYG 125

[Close]

BLAST of CsGy1G010840 vs. NCBI nr
Match: XP_008441397.1 (PREDICTED: nuclear transport factor 2 [Cucumis melo])

HSP 1 Score: 242 bits (617), Expect = 2.30e-80
Identity = 117/124 (94.35%), Postives = 122/124 (98.39%), Query Frame = 0


Query: 2   EEEGDIIGKAFVEHYYQLFDNERASLSSLYQPDSMLTFEGQQILGVHDISSKLQQLPFER 61
           EE+GDIIGKAFVEHYY LFDNERASLSSLYQPDSMLTFEGQQILGV+DIS+KLQQLPFER
Sbjct: 3   EEQGDIIGKAFVEHYYHLFDNERASLSSLYQPDSMLTFEGQQILGVNDISTKLQQLPFER 62

Query: 62  CRHVVSTIDTQPSSVHGSILIFVSGSIEIPEEEHPLRFSQMFHLVPSPEGNLFVQNDIFR 121
           CRHVVSTIDTQPSSV GSILIFVSGSIEIPEEEHPLR+SQMFHLVPSP+GNLFVQNDIFR
Sbjct: 63  CRHVVSTIDTQPSSVPGSILIFVSGSIEIPEEEHPLRYSQMFHLVPSPQGNLFVQNDIFR 122

Query: 122 LNYG 125
           LNYG
Sbjct: 123 LNYG 126

[Close]

BLAST of CsGy1G010840 vs. NCBI nr
Match: XP_038895004.1 (nuclear transport factor 2B [Benincasa hispida])

HSP 1 Score: 234 bits (596), Expect = 3.55e-77
Identity = 114/125 (91.20%), Postives = 119/125 (95.20%), Query Frame = 0


Query: 1   MEEEGDIIGKAFVEHYYQLFDNERASLSSLYQPDSMLTFEGQQILGVHDISSKLQQLPFE 60
           MEEE DIIGKAFVEHYYQLFDNERASLSSLYQPDSMLTFEGQQILGV DISSKLQQLPFE
Sbjct: 1   MEEEADIIGKAFVEHYYQLFDNERASLSSLYQPDSMLTFEGQQILGVDDISSKLQQLPFE 60

Query: 61  RCRHVVSTIDTQPSSVHGSILIFVSGSIEIPEEEHPLRFSQMFHLVPSPEGNLFVQNDIF 120
           R RH+VSTIDTQPSSV GS LIFVSGS+E+PEEEH LRFSQMFHLVPSP+GNLFVQN+IF
Sbjct: 61  RSRHIVSTIDTQPSSVLGSFLIFVSGSLELPEEEHQLRFSQMFHLVPSPQGNLFVQNEIF 120

Query: 121 RLNYG 125
           RLNYG
Sbjct: 121 RLNYG 125

[Close]

BLAST of CsGy1G010840 vs. NCBI nr
Match: XP_023001318.1 (nuclear transport factor 2B [Cucurbita maxima])

HSP 1 Score: 231 bits (588), Expect = 5.90e-76
Identity = 109/125 (87.20%), Postives = 119/125 (95.20%), Query Frame = 0


Query: 1   MEEEGDIIGKAFVEHYYQLFDNERASLSSLYQPDSMLTFEGQQILGVHDISSKLQQLPFE 60
           MEEE DI+GKAFVEHYYQLFDNER SLS+LYQPDSMLTFEGQQILGVHDISS+LQQLPFE
Sbjct: 1   MEEEADIVGKAFVEHYYQLFDNERPSLSTLYQPDSMLTFEGQQILGVHDISSRLQQLPFE 60

Query: 61  RCRHVVSTIDTQPSSVHGSILIFVSGSIEIPEEEHPLRFSQMFHLVPSPEGNLFVQNDIF 120
           RCRHVVST+DTQPS+V GSILIFVSGS+E+PEEEH LRFSQMFHLVP+ +GNL +QNDIF
Sbjct: 61  RCRHVVSTVDTQPSAVPGSILIFVSGSLELPEEEHHLRFSQMFHLVPTAQGNLCIQNDIF 120

Query: 121 RLNYG 125
           RLNYG
Sbjct: 121 RLNYG 125

[Close]

BLAST of CsGy1G010840 vs. NCBI nr
Match: XP_023519037.1 (nuclear transport factor 2B [Cucurbita pepo subsp. pepo])

HSP 1 Score: 227 bits (578), Expect = 1.98e-74
Identity = 109/125 (87.20%), Postives = 118/125 (94.40%), Query Frame = 0


Query: 1   MEEEGDIIGKAFVEHYYQLFDNERASLSSLYQPDSMLTFEGQQILGVHDISSKLQQLPFE 60
           MEEE DI+GKAFVEHYYQLFDNER SLS+LYQPDSMLTFEGQQILGV DISS+LQQLPFE
Sbjct: 1   MEEETDIVGKAFVEHYYQLFDNERPSLSTLYQPDSMLTFEGQQILGVDDISSRLQQLPFE 60

Query: 61  RCRHVVSTIDTQPSSVHGSILIFVSGSIEIPEEEHPLRFSQMFHLVPSPEGNLFVQNDIF 120
           RCRHVVST+DTQPS+V GSILIFVSGS+E+PEEEH LRFSQMFHLVP+ +GNL VQNDIF
Sbjct: 61  RCRHVVSTVDTQPSAVPGSILIFVSGSLELPEEEHHLRFSQMFHLVPTAQGNLCVQNDIF 120

Query: 121 RLNYG 125
           RLNYG
Sbjct: 121 RLNYG 125

[Close]

BLAST of CsGy1G010840 vs. ExPASy TrEMBL
Match: A0A0A0LUU9 (NTF2 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G064690 PE=4 SV=1)

HSP 1 Score: 257 bits (656), Expect = 1.21e-86
Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 0


Query: 1   MEEEGDIIGKAFVEHYYQLFDNERASLSSLYQPDSMLTFEGQQILGVHDISSKLQQLPFE 60
           MEEEGDIIGKAFVEHYYQLFDNERASLSSLYQPDSMLTFEGQQILGVHDISSKLQQLPFE
Sbjct: 1   MEEEGDIIGKAFVEHYYQLFDNERASLSSLYQPDSMLTFEGQQILGVHDISSKLQQLPFE 60

Query: 61  RCRHVVSTIDTQPSSVHGSILIFVSGSIEIPEEEHPLRFSQMFHLVPSPEGNLFVQNDIF 120
           RCRHVVSTIDTQPSSVHGSILIFVSGSIEIPEEEHPLRFSQMFHLVPSPEGNLFVQNDIF
Sbjct: 61  RCRHVVSTIDTQPSSVHGSILIFVSGSIEIPEEEHPLRFSQMFHLVPSPEGNLFVQNDIF 120

Query: 121 RLNYG 125
           RLNYG
Sbjct: 121 RLNYG 125

[Close]

BLAST of CsGy1G010840 vs. ExPASy TrEMBL
Match: A0A1S3B3B7 (nuclear transport factor 2 OS=Cucumis melo OX=3656 GN=LOC103485524 PE=4 SV=1)

HSP 1 Score: 242 bits (617), Expect = 1.11e-80
Identity = 117/124 (94.35%), Postives = 122/124 (98.39%), Query Frame = 0


Query: 2   EEEGDIIGKAFVEHYYQLFDNERASLSSLYQPDSMLTFEGQQILGVHDISSKLQQLPFER 61
           EE+GDIIGKAFVEHYY LFDNERASLSSLYQPDSMLTFEGQQILGV+DIS+KLQQLPFER
Sbjct: 3   EEQGDIIGKAFVEHYYHLFDNERASLSSLYQPDSMLTFEGQQILGVNDISTKLQQLPFER 62

Query: 62  CRHVVSTIDTQPSSVHGSILIFVSGSIEIPEEEHPLRFSQMFHLVPSPEGNLFVQNDIFR 121
           CRHVVSTIDTQPSSV GSILIFVSGSIEIPEEEHPLR+SQMFHLVPSP+GNLFVQNDIFR
Sbjct: 63  CRHVVSTIDTQPSSVPGSILIFVSGSIEIPEEEHPLRYSQMFHLVPSPQGNLFVQNDIFR 122

Query: 122 LNYG 125
           LNYG
Sbjct: 123 LNYG 126

[Close]

BLAST of CsGy1G010840 vs. ExPASy TrEMBL
Match: A0A6J1KQ62 (nuclear transport factor 2B OS=Cucurbita maxima OX=3661 GN=LOC111495482 PE=4 SV=1)

HSP 1 Score: 231 bits (588), Expect = 2.86e-76
Identity = 109/125 (87.20%), Postives = 119/125 (95.20%), Query Frame = 0


Query: 1   MEEEGDIIGKAFVEHYYQLFDNERASLSSLYQPDSMLTFEGQQILGVHDISSKLQQLPFE 60
           MEEE DI+GKAFVEHYYQLFDNER SLS+LYQPDSMLTFEGQQILGVHDISS+LQQLPFE
Sbjct: 1   MEEEADIVGKAFVEHYYQLFDNERPSLSTLYQPDSMLTFEGQQILGVHDISSRLQQLPFE 60

Query: 61  RCRHVVSTIDTQPSSVHGSILIFVSGSIEIPEEEHPLRFSQMFHLVPSPEGNLFVQNDIF 120
           RCRHVVST+DTQPS+V GSILIFVSGS+E+PEEEH LRFSQMFHLVP+ +GNL +QNDIF
Sbjct: 61  RCRHVVSTVDTQPSAVPGSILIFVSGSLELPEEEHHLRFSQMFHLVPTAQGNLCIQNDIF 120

Query: 121 RLNYG 125
           RLNYG
Sbjct: 121 RLNYG 125

[Close]

BLAST of CsGy1G010840 vs. ExPASy TrEMBL
Match: A0A6J1F427 (nuclear transport factor 2B OS=Cucurbita moschata OX=3662 GN=LOC111440050 PE=4 SV=1)

HSP 1 Score: 226 bits (577), Expect = 1.36e-74
Identity = 108/125 (86.40%), Postives = 118/125 (94.40%), Query Frame = 0


Query: 1   MEEEGDIIGKAFVEHYYQLFDNERASLSSLYQPDSMLTFEGQQILGVHDISSKLQQLPFE 60
           MEEE DI+GKAFVEHYYQLFDNER SLS+LYQPDSMLTFEGQQILGV DISS+LQQLPFE
Sbjct: 1   MEEEADIVGKAFVEHYYQLFDNERPSLSTLYQPDSMLTFEGQQILGVDDISSRLQQLPFE 60

Query: 61  RCRHVVSTIDTQPSSVHGSILIFVSGSIEIPEEEHPLRFSQMFHLVPSPEGNLFVQNDIF 120
           RCRHVVST+DTQPS+V GSILIFVSGS+E+P+EEH LRFSQMFHLVP+ +GNL VQNDIF
Sbjct: 61  RCRHVVSTVDTQPSAVPGSILIFVSGSLELPDEEHHLRFSQMFHLVPTAQGNLCVQNDIF 120

Query: 121 RLNYG 125
           RLNYG
Sbjct: 121 RLNYG 125

[Close]

BLAST of CsGy1G010840 vs. ExPASy TrEMBL
Match: A0A6J1CEC9 (nuclear transport factor 2 OS=Momordica charantia OX=3673 GN=LOC111010728 PE=4 SV=1)

HSP 1 Score: 219 bits (557), Expect = 1.52e-71
Identity = 102/125 (81.60%), Postives = 118/125 (94.40%), Query Frame = 0


Query: 1   MEEEGDIIGKAFVEHYYQLFDNERASLSSLYQPDSMLTFEGQQILGVHDISSKLQQLPFE 60
           MEEE +++G+AFVEHYYQLFDNERAS+SSLYQP+SMLTFEGQ+ILGV DISS+LQQLPFE
Sbjct: 1   MEEESEMVGRAFVEHYYQLFDNERASVSSLYQPESMLTFEGQKILGVDDISSRLQQLPFE 60

Query: 61  RCRHVVSTIDTQPSSVHGSILIFVSGSIEIPEEEHPLRFSQMFHLVPSPEGNLFVQNDIF 120
           RCRHVVST+DTQPS+  GS+LIFVSGS+E+P EEH LRFSQMFHLVP+ +G+LFVQNDIF
Sbjct: 61  RCRHVVSTLDTQPSAATGSLLIFVSGSLELPGEEHQLRFSQMFHLVPTSQGSLFVQNDIF 120

Query: 121 RLNYG 125
           RLNYG
Sbjct: 121 RLNYG 125

[Close]

BLAST of CsGy1G010840 vs. TAIR 10
Match: AT1G11570.2 (NTF2-like )

HSP 1 Score: 169.1 bits (427), Expect = 2.3e-42
Identity = 80/128 (62.50%), Postives = 104/128 (81.25%), Query Frame = 0


Query: 1   MEEEGDIIGKAFVEHYYQLFDNERASLSSLYQPDSMLTFEGQQILGVHDISSKLQQLPFE 60
           +EEE   +  AFV HYY LFDN+R+SLSSLY P S+LTFEGQ I GV +IS+KL+QLPF+
Sbjct: 8   IEEE---VASAFVNHYYHLFDNDRSSLSSLYNPTSLLTFEGQTIYGVDNISNKLKQLPFD 67

Query: 61  RCRHVVSTIDTQPSSVH---GSILIFVSGSIEIPEEEHPLRFSQMFHLVPSPEGNLFVQN 120
           +C H++ST+D+QPSS+    G IL+FVSGSI++  E+HPLRFSQ FHL+P  +G+ FVQN
Sbjct: 68  QCHHLISTVDSQPSSMAGGCGGILVFVSGSIQLHGEDHPLRFSQTFHLIPVLQGSFFVQN 127

Query: 121 DIFRLNYG 126
           ++FRLNYG
Sbjct: 128 EMFRLNYG 132

[Close]

BLAST of CsGy1G010840 vs. TAIR 10
Match: AT1G27970.1 (nuclear transport factor 2B )

HSP 1 Score: 155.6 bits (392), Expect = 2.6e-38
Identity = 69/119 (57.98%), Postives = 90/119 (75.63%), Query Frame = 0


Query: 6   DIIGKAFVEHYYQLFDNERASLSSLYQPDSMLTFEGQQILGVHDISSKLQQLPFERCRHV 65
           D + KAFVEHYY  FD  R  L+ LYQ  SMLTFEGQ+I GV  I +KL  LPF++C+H 
Sbjct: 7   DAVSKAFVEHYYSTFDTNRVGLAGLYQEASMLTFEGQKIQGVQSIVAKLTSLPFQQCKHH 66

Query: 66  VSTIDTQPSSVHGSILIFVSGSIEIPEEEHPLRFSQMFHLVPSPEGNLFVQNDIFRLNY 125
           +ST+D QPS     +L+FVSG++++  EEH L+FSQMFHL+P+P+G+ +V NDIFRLNY
Sbjct: 67  ISTVDCQPSGPASGMLVFVSGNLQLAGEEHALKFSQMFHLMPTPQGSFYVFNDIFRLNY 125

[Close]

BLAST of CsGy1G010840 vs. TAIR 10
Match: AT1G27970.2 (nuclear transport factor 2B )

HSP 1 Score: 146.7 bits (369), Expect = 1.2e-35
Identity = 65/115 (56.52%), Postives = 86/115 (74.78%), Query Frame = 0


Query: 6   DIIGKAFVEHYYQLFDNERASLSSLYQPDSMLTFEGQQILGVHDISSKLQQLPFERCRHV 65
           D + KAFVEHYY  FD  R  L+ LYQ  SMLTFEGQ+I GV  I +KL  LPF++C+H 
Sbjct: 7   DAVSKAFVEHYYSTFDTNRVGLAGLYQEASMLTFEGQKIQGVQSIVAKLTSLPFQQCKHH 66

Query: 66  VSTIDTQPSSVHGSILIFVSGSIEIPEEEHPLRFSQMFHLVPSPEGNLFVQNDIF 121
           +ST+D QPS     +L+FVSG++++  EEH L+FSQMFHL+P+P+G+ +V NDIF
Sbjct: 67  ISTVDCQPSGPASGMLVFVSGNLQLAGEEHALKFSQMFHLMPTPQGSFYVFNDIF 121

[Close]

BLAST of CsGy1G010840 vs. TAIR 10
Match: AT1G27310.1 (nuclear transport factor 2A )

HSP 1 Score: 145.2 bits (365), Expect = 3.5e-35
Identity = 68/119 (57.14%), Postives = 89/119 (74.79%), Query Frame = 0


Query: 6   DIIGKAFVEHYYQLFDNERASLSSLYQPDSMLTFEGQQILGVHDISSKLQQLPFERCRHV 65
           D + KAFVEHYY  FD  R  L SLYQ  SMLTFEGQ+I G  +I +KL  LPF++C+H 
Sbjct: 4   DAVAKAFVEHYYSTFDANRPGLVSLYQEGSMLTFEGQKIQGSQNIVAKLTGLPFQQCKHN 63

Query: 66  VSTIDTQPSSVHGSILIFVSGSIEIPEEEHPLRFSQMFHLVPSPEGNLFVQNDIFRLNY 125
           ++T+D QPS   G +L+FVSG++++  E+H L+FSQMFHL+ S +GN +V NDIFRLNY
Sbjct: 64  ITTVDCQPSGPAGGMLVFVSGNLQLAGEQHALKFSQMFHLI-SNQGNYYVFNDIFRLNY 121

[Close]

BLAST of CsGy1G010840 vs. TAIR 10
Match: AT1G11570.1 (NTF2-like )

HSP 1 Score: 134.8 bits (338), Expect = 4.8e-32
Identity = 66/108 (61.11%), Postives = 87/108 (80.56%), Query Frame = 0


Query: 1   MEEEGDIIGKAFVEHYYQLFDNERASLSSLYQPDSMLTFEGQQILGVHDISSKLQQLPFE 60
           +EEE   +  AFV HYY LFDN+R+SLSSLY P S+LTFEGQ I GV +IS+KL+QLPF+
Sbjct: 8   IEEE---VASAFVNHYYHLFDNDRSSLSSLYNPTSLLTFEGQTIYGVDNISNKLKQLPFD 67

Query: 61  RCRHVVSTIDTQPSSVH---GSILIFVSGSIEIPEEEHPLRFSQMFHL 106
           +C H++ST+D+QPSS+    G IL+FVSGSI++  E+HPLRFSQ++ L
Sbjct: 68  QCHHLISTVDSQPSSMAGGCGGILVFVSGSIQLHGEDHPLRFSQVYLL 112

The following BLAST results are available for this feature:

BLAST of CsGy1G010840 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9C7F5	3.7e-37	57.98	Nuclear transport factor 2B OS=Arabidopsis thaliana OX=3702 GN=NTF2B PE=1 SV=1	[more]
Q9XJ54	3.1e-36	58.20	Nuclear transport factor 2 OS=Oryza sativa subsp. japonica OX=39947 GN=NTF2 PE=2...	[more]
Q9FZK4	5.0e-34	57.14	Nuclear transport factor 2A OS=Arabidopsis thaliana OX=3702 GN=NTF2A PE=1 SV=1	[more]
Q10100	1.2e-27	50.00	Nuclear transport factor 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843...	[more]
Q96VN3	2.0e-27	49.57	Nuclear transport factor 2 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 /...	[more]

BLAST of CsGy1G010840 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004153658.1	2.50e-86	100.00	nuclear transport factor 2B [Cucumis sativus] >KGN64547.1 hypothetical protein C...	[more]
XP_008441397.1	2.30e-80	94.35	PREDICTED: nuclear transport factor 2 [Cucumis melo]	[more]
XP_038895004.1	3.55e-77	91.20	nuclear transport factor 2B [Benincasa hispida]	[more]
XP_023001318.1	5.90e-76	87.20	nuclear transport factor 2B [Cucurbita maxima]	[more]
XP_023519037.1	1.98e-74	87.20	nuclear transport factor 2B [Cucurbita pepo subsp. pepo]	[more]

BLAST of CsGy1G010840 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LUU9	1.21e-86	100.00	NTF2 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G064690 PE=4 S...	[more]
A0A1S3B3B7	1.11e-80	94.35	nuclear transport factor 2 OS=Cucumis melo OX=3656 GN=LOC103485524 PE=4 SV=1	[more]
A0A6J1KQ62	2.86e-76	87.20	nuclear transport factor 2B OS=Cucurbita maxima OX=3661 GN=LOC111495482 PE=4 SV=...	[more]
A0A6J1F427	1.36e-74	86.40	nuclear transport factor 2B OS=Cucurbita moschata OX=3662 GN=LOC111440050 PE=4 S...	[more]
A0A6J1CEC9	1.52e-71	81.60	nuclear transport factor 2 OS=Momordica charantia OX=3673 GN=LOC111010728 PE=4 S...	[more]

BLAST of CsGy1G010840 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G11570.2	2.3e-42	62.50	NTF2-like	[more]
AT1G27970.1	2.6e-38	57.98	nuclear transport factor 2B	[more]
AT1G27970.2	1.2e-35	56.52	nuclear transport factor 2B	[more]
AT1G27310.1	3.5e-35	57.14	nuclear transport factor 2A	[more]
AT1G11570.1	4.8e-32	61.11	NTF2-like	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.10.450.50		coord: 1..125 e-value: 1.1E-40 score: 140.6
None	No IPR available	PANTHER	PTHR12612:SF29	NTF2-LIKE PROTEIN	coord: 4..125
None	No IPR available	PANTHER	PTHR12612	NUCLEAR TRANSPORT FACTOR 2	coord: 4..125
IPR002075	Nuclear transport factor 2	PFAM	PF02136	NTF2	coord: 8..122 e-value: 8.5E-33 score: 113.5
IPR018222	Nuclear transport factor 2, eukaryote	PROSITE	PS50177	NTF2_DOMAIN	coord: 8..122 score: 31.991106
IPR018222	Nuclear transport factor 2, eukaryote	CDD	cd00780	NTF2	coord: 5..124 e-value: 2.83126E-42 score: 133.562
IPR032710	NTF2-like domain superfamily	SUPERFAMILY	54427	NTF2-like	coord: 8..123

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy1G010840.2	CsGy1G010840.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006913	nucleocytoplasmic transport
cellular_component	GO:0044613	nuclear pore central transport channel