CsGy1G007500 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy1G007500
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	Coiled-coil domain-containing protein 12
Location	Gy14Chr1: 4819602 .. 4823798 (-)
RNA-Seq Expression	CsGy1G007500
Synteny	CsGy1G007500

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGGAATTTCTTAGGGTTTGTTTTGATCTTAAGATTTAGAGAAATTAAAAGTAGAGATTTTTTTTATAGATTTATTATCAATTGAGACTATTTATTATATTTTATAAAGATAATAATTTTTTTTAGGAAAACAAATATTAAATTATAATTTTAGAAATCTGAAAAAATAGATTTTAGTTTAGAAGAAAAAAACCCGACGAGGAACAAAATTTCATGAGCGGATCCGATTGAACTCTTGATGGGCCTCTTACGATCCGGGCCTTATATATATATCTCATTCCAAAGAGAAATGCGTCAAAAAGGCTTCTGCGCAAGAAAGAAACACTCGTTTTTCTCCCTCCCGCCATTGCTCGAAGCTTCCTGTCTACTTTGTCTGTAAGTATATTTCTTCTGCGGAAGTCCTTAATTGCGTATGTTGTGTTTTCTCATCTTCATGTTTCTTCTACCGCTGTCTGCGGAAGTCGTTAATTGCGTATGCATTTTTGAAATCATAGACAGAGTTATTTTCGTATCAGGTATTTTACGCACAAAGGCAATGGCTACTGAAGAAGACTCCGTGGAACAAGTTGCTGCAGCACGTAAAGAGAGATTGAAAGCTCTAAGAGCTGCTCAGGAATTGTTAAACAATTCAGATGAGAAGAATTCTGGAGGAGAGGATAAAGAGAATGGAGCTACTGAAGATTCTGATGAAACGTGAGTGTATTCTCATTTAAATATCTATTCTGTGGTATCTCTCCAAATTCATGCTACTCTCTTTTATATCTCGTTTTGAATGTCCTCTTTATCTCTTTTATCTCTGTCTATGTGTTTATTGCCTGACCTATTTTCCTTCTGTTTTAACTATTTCTTTCTCATTCCCTTCCTTTAGCGTTTAGCCATCCTTTTTATCTTTGTGTCTGTCATCTGACTTATTTTCTCTCTTTTATTGTACGGCGGGAGTCTATATTGAAATTACATACTTAGCATAGTGAGCCAAGTTTCTAGAATCTGGCTTGAAACATGTTACAGGCTACTAACGCATGCTGTTGCCAGTGTGCTAAGCTCTCTAGAACTTGGATTGGGGCATATTACAAACAAAAGCATTGGCAATAGTATTTGCGTAGGGGCAGGACAGACAAAAGTTGCCTTAGTTTCCTTAGTAAAATGTGTCTTTCTTTTTGCAGACTAGAGTCGCAAAATGGCCACAAAAGCTATAGAGCATAAGACTAAAACCAAATATATGATAGAATAGTACTAGAAACTAACCTGTAAAGCTTATGTTAACACAAAGCATGTGAAATGTGAAGTATGCTCATAAAGTTATCCTCCCTTCAATAAGATGTTTACTTCTTTTTTTTTTCCTTTCATTTACTTTTCAATTCTTTCTTTCCTTTTCTTTTGTTTTTGTTTTTGTTTCTGTTTCTTTTTTGTGTTTTCTCTTTTCCTTTCTAGTTTTTAATAACATTTGTGCTTGTAGGAGTTTAGGATGATGGCGAGGTGGTCCCATTGATTGCAATGCTTCATACAGCCTAATTGCTTTTTTTTTTTTCGGGGCGATATGTTCTCATGTTTACCTTCAAAAGTTTTCCAATATGTTTTCTCTTGAGGGGGAAAATGCGTTCAATATAAATAACATTCTCTTGTCCATTGAATATGTGTTTTGTTTGATGCTGTTCTCATTCCAAACTCACTTGAAAAATTTATGTACTCAATTACGATGAAACTTCCCTCTTGGAAGAGTGCAAAATACAGACAAACGTATTTTTTGATGTTGAATTTTTTTATGCCTCGTGTCTCTTCAGTTCTTGATTCACCAATAAATTGTTCTTTTGCAGTAATCTCAATATGAAATTTCGGAACTATGTTCCTCATGATAAAGAGCTTCAGGAGGGCAAGCTTGCCCCACCTGTATTGCCTAAATTTGAGGACCCTGTTACTTCTGAACCTCCACAACTAAAAGAGGTAATTTTGTCAGTTCTGCCTTTATATGTTCTTAAACTGGCCTACAATCATACTTTTTGAATCCTTTTCTATTAATTATACTCGATCGTTAAAATTATAGGACCCATTTGTAAATATCGCTCCAAAGAAACCAAACTGGGACCTTAGAAGGGACGTGCAGAAGAAGCTTGATAAGCTTGAAAGACGCACACAGAAAGCACTATTCAAGCTTATGGGTAAGTAGAAGTATTCAATTAAAGGTTAACTTGATAGGTCATTACACTATGCTCGTTCTTTGACTTGCCTTTTCTTGTAGTGTAGCTAGACTATGGATTGAATTTTATTTTCTTTGTTTGTCTGAGAAGATATCTATCTCGGGATGATTGGCATATACATAATACCATTTTGTTTGCTGGTTCTGTTTCTCTTTGATGTATTTAACTTGTGAGCAAATTCCTATGCACCACTGCAGTTATGAACAATTAAGAGATCTTGATTATCTTCTTCAAGCATTTGTGTTGAGGTTAAACATGTGTGATGTACTGTTGGTTGCAACATTTTTCTCTAACATTTTCCAACCGAAGTCATTGCACTTGTCTCTGCTGGGATTATAAGCTGTCTTCAATCTTGAAACTTTGAACTTGGCTGGGCTGTAAAAGTTTGGGGGATAGGGATCTTTTGGTATCAAGAGTAGTTGTGGATCTTAGAGTCGGTATAAGCGAGTTTCTTATTTATTCATTTACTTGGGACATTACACTTCAAATAGGAGATGAGGTTTTGAACCTATATTTTTTAGAAGGCATAAGCGAGTTTCTTATTTATTCATTTACTTGGGACATTACACTTCAAATAGGAGATGAGGTTTTGAACCTATATTTTTTAGAAGGCATTACATGTCTTATAGTTGTATTCAAATTGATGTAGGTTACCCTAGTTAGCTAGTTATGCATTGAAAGTTGCAAGAGTAGTTATCATGTGTATCATAGAGATGCTAGAAAATTATTTGAAGTCTGAAATTACGGATCCGGTTAAAACATTCAGAGCACCTTGTTTGGTTGCCTTTTTGAACTTTTTGCTTGTTCAATTCTGTGTAGAGGAACAAGAAAAGCAAAAGCAGGCAGCTGAAGGAGACAATGACGAAAATGGTGCAGAGTGATAGTTTCCCACAATTTATATGCTCTCTGATGTTACAGTCACGGTAATATTCACGATATATCGACATGCTTGGAGAAAATTGTCCTTAAAGGGCAATGGCATTTCTGGCTTGCAACTTTACATTCTTAGTTGCAAAACTTTACATTTATAGTTTATCTATGGTGTGGCTCATTGTGTGTTCCTTGACCATTACATCCAATAGAATATCTCATACTGCATAGTGATTTGTAATTTACCTAAACTAAAACTAACTTTGTATTTCACTTTATCTTCTACGTTGTTTTTCTTCTTCATTTTATAATCTATTAGACACACATTAATTTGGCATATGTTCCACGGTTCATTCACTTCACTTTGTCTTGTGTTGGGGCAGTTCGGATGACGTCGGAACTGCAAGCATATGTGCAAGTAAAAGGTGATTATATGATTACTATTACCTTTTACGCTTTTGATTTTTCCATTTTTGGATGCTGTTTGAATGAGGTTTCAGTTTTCAGTATTATATTGAAAATTTATTGTAAATGTCAAAACTTCTAAAAAAGTATTTACAAAGTTTCCAATTATATTTACTATCTACTATTTAATATTTTGAAAAGTATTTTATAAAGTAGTACGCAAGGGTTTTTCTCAGGAGGATAAGTTTTAAATAGTTACTCAAAATATTACTTCTTTTTTTTTCCTCCCGACGCATTTCTGTTTTCCTCTCAATATATTTCTTTCTAAATTAATGTTCTTCTTCCTCTCTCTGTTCCAAGTATCTTCCCTTCTAGTGAAAACTTTTTTTCTTAATTTGTCTTTCCTATGTTATATTGTATTCTTAATTTGTTTTTCTGATAAAACCTCTATATAACTCTATAACTCCTTTTTAATAGATTTGCCTTTCGAAAGAAAATATTATATATTTTATTTTCTTTATTCCGTAAGAGAAAAACAAGGTGTATTTTACTGCTTAGGTCAAATTGCAACTACTACCACTAAACTTTCAAAATTAAAAATTAAATTTAACAAACTATTTATATTTAAACTACTAAACGACAATTTCACTATTAAATATTTTGTCAAATGTTTTATTTTTTTTACTATTTTTTAAAAATTATTTTATCTAAAATTTAAAATTGAGCCA

mRNA sequence

AGGAATTTCTTAGGGTTTGTTTTGATCTTAAGATTTAGAGAAATTAAAAGTAGAGATTTTTTTTATAGATTTATTATCAATTGAGACTATTTATTATATTTTATAAAGATAATAATTTTTTTTAGGAAAACAAATATTAAATTATAATTTTAGAAATCTGAAAAAATAGATTTTAGTTTAGAAGAAAAAAACCCGACGAGGAACAAAATTTCATGAGCGGATCCGATTGAACTCTTGATGGGCCTCTTACGATCCGGGCCTTATATATATATCTCATTCCAAAGAGAAATGCGTCAAAAAGGCTTCTGCGCAAGAAAGAAACACTCGTTTTTCTCCCTCCCGCCATTGCTCGAAGCTTCCTGTCTACTTTGTCTAGTTATTTTCGTATCAGGTATTTTACGCACAAAGGCAATGGCTACTGAAGAAGACTCCGTGGAACAAGTTGCTGCAGCACGTAAAGAGAGATTGAAAGCTCTAAGAGCTGCTCAGGAATTGTTAAACAATTCAGATGAGAAGAATTCTGGAGGAGAGGATAAAGAGAATGGAGCTACTGAAGATTCTGATGAAACTAATCTCAATATGAAATTTCGGAACTATGTTCCTCATGATAAAGAGCTTCAGGAGGGCAAGCTTGCCCCACCTGTATTGCCTAAATTTGAGGACCCTGTTACTTCTGAACCTCCACAACTAAAAGAGGACCCATTTGTAAATATCGCTCCAAAGAAACCAAACTGGGACCTTAGAAGGGACGTGCAGAAGAAGCTTGATAAGCTTGAAAGACGCACACAGAAAGCACTATTCAAGCTTATGGAGGAACAAGAAAAGCAAAAGCAGGCAGCTGAAGGAGACAATGACGAAAATGGTGCAGAGTGATAGTTTCCCACAATTTATATGCTCTCTGATGTTACAGTCACGGTAATATTCACGATATATCGACATGCTTGGAGAAAATTGTCCTTAAAGGGCAATGGCATTTCTGGCTTGCAACTTTACATTCTTAGTTGCAAAACTTTACATTTATAGTTTATCTATGGTGTGGCTCATTGTGTGTTCCTTGACCATTACATCCAATAGAATATCTCATACTGCATAGTGATTTGTAATTTACCTAAACTAAAACTAACTTTGTATTTCACTTTATCTTCTACGTTGTTTTTCTTCTTCATTTTATAATCTATTAGACACACATTAATTTGGCATATGTTCCACGGTTCATTCACTTCACTTTGTCTTGTGTTGGGGCAGTTCGGATGACGTCGGAACTGCAAGCATATGTGCAAGTAAAAGGTGATTATATGATTACTATTACCTTTTACGCTTTTGATTTTTCCATTTTTGGATGCTGTTTGAATGAGGTTTCAGTTTTCAGTATTATATTGAAAATTTATTGTAAATGTCAAAACTTCTAAAAAAGTATTTACAAAGTTTCCAATTATATTTACTATCTACTATTTAATATTTTGAAAAGTATTTTATAAAGTAGTACGCAAGGGTTTTTCTCAGGAGGATAAGTTTTAAATAGTTACTCAAAATATTACTTCTTTTTTTTTCCTCCCGACGCATTTCTGTTTTCCTCTCAATATATTTCTTTCTAAATTAATGTTCTTCTTCCTCTCTCTGTTCCAAGTATCTTCCCTTCTAGTGAAAACTTTTTTTCTTAATTTGTCTTTCCTATGTTATATTGTATTCTTAATTTGTTTTTCTGATAAAACCTCTATATAACTCTATAACTCCTTTTTAATAGATTTGCCTTTCGAAAGAAAATATTATATATTTTATTTTCTTTATTCCGTAAGAGAAAAACAAGGTGTATTTTACTGCTTAGGTCAAATTGCAACTACTACCACTAAACTTTCAAAATTAAAAATTAAATTTAACAAACTATTTATATTTAAACTACTAAACGACAATTTCACTATTAAATATTTTGTCAAATGTTTTATTTTTTTTACTATTTTTTAAAAATTATTTTATCTAAAATTTAAAATTGAGCCA

Coding sequence (CDS)

ATGGGCCTCTTACGATCCGGGCCTTATATATATATCTCATTCCAAAGAGAAATGCGTCAAAAAGGCTTCTGCGCAAGAAAGAAACACTCGTTTTTCTCCCTCCCGCCATTGCTCGAAGCTTCCTGTCTACTTTGTCTAGTTATTTTCGTATCAGGTATTTTACGCACAAAGGCAATGGCTACTGAAGAAGACTCCGTGGAACAAGTTGCTGCAGCACGTAAAGAGAGATTGAAAGCTCTAAGAGCTGCTCAGGAATTGTTAAACAATTCAGATGAGAAGAATTCTGGAGGAGAGGATAAAGAGAATGGAGCTACTGAAGATTCTGATGAAACTAATCTCAATATGAAATTTCGGAACTATGTTCCTCATGATAAAGAGCTTCAGGAGGGCAAGCTTGCCCCACCTGTATTGCCTAAATTTGAGGACCCTGTTACTTCTGAACCTCCACAACTAAAAGAGGACCCATTTGTAAATATCGCTCCAAAGAAACCAAACTGGGACCTTAGAAGGGACGTGCAGAAGAAGCTTGATAAGCTTGAAAGACGCACACAGAAAGCACTATTCAAGCTTATGGAGGAACAAGAAAAGCAAAAGCAGGCAGCTGAAGGAGACAATGACGAAAATGGTGCAGAGTGA

Protein sequence

MGLLRSGPYIYISFQREMRQKGFCARKKHSFFSLPPLLEASCLLCLVIFVSGILRTKAMATEEDSVEQVAAARKERLKALRAAQELLNNSDEKNSGGEDKENGATEDSDETNLNMKFRNYVPHDKELQEGKLAPPVLPKFEDPVTSEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDKLERRTQKALFKLMEEQEKQKQAAEGDNDENGAE*

Homology

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BLAST of CsGy1G007500 vs. ExPASy Swiss-Prot
Match: Q8WUD4 (Coiled-coil domain-containing protein 12 OS=Homo sapiens OX=9606 GN=CCDC12 PE=1 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 1.8e-12
Identity = 52/140 (37.14%), Postives = 89/140 (63.57%), Query Frame = 0


Query: 66  VEQVAAARKERLKALRAAQELLNNSDEKNSGGEDKENGATEDSDETNLNMKFRNYVPHDK 125
           +E+ A  RKERLKALR   E     D+++   + K     E+  E +  ++ RNYVP D+
Sbjct: 11  LEEEALRRKERLKALR---EKTGRKDKEDGEPKTKHLREEEEEGEKHRELRLRNYVPEDE 70

Query: 126 ELQEGKL--APPVL--PKFEDPVTSEPPQ--LKEDPFVNIAPKKPNWDLRRDVQKKLDKL 185
           +L++ ++  A PV    K ++ + +  P+  ++E    N+AP+KP+WDL+RDV KKL+KL
Sbjct: 71  DLKKRRVPQAKPVAVEEKVKEQLEAAKPEPVIEEVDLANLAPRKPDWDLKRDVAKKLEKL 130

Query: 186 ERRTQKALFKLMEEQEKQKQ 200
           ++RTQ+A+ +L+ E+ K ++
Sbjct: 131 KKRTQRAIAELIRERLKGQE 147

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BLAST of CsGy1G007500 vs. ExPASy Swiss-Prot
Match: Q8R344 (Coiled-coil domain-containing protein 12 OS=Mus musculus OX=10090 GN=Ccdc12 PE=1 SV=2)

HSP 1 Score: 71.6 bits (174), Expect = 1.2e-11
Identity = 54/142 (38.03%), Postives = 89/142 (62.68%), Query Frame = 0


Query: 66  VEQVAAARKERLKALRAAQELLNNSDEKNSGGEDKENGATEDSDET--NLNMKFRNYVPH 125
           +E+ A  RKERLKALR   E     D ++  GE +     E+ +E   +  ++ RNYVP 
Sbjct: 11  LEEEALRRKERLKALR---EKTGRKDRED--GEPQTKQLREEGEEVGKHRGLRLRNYVPE 70

Query: 126 DKELQEGKL--APPVL--PKFEDPVTSEPPQ--LKEDPFVNIAPKKPNWDLRRDVQKKLD 185
           D++L+  ++  A PV    K ++ + +  P+  ++E    N+AP+KP+WDL+RDV KKL+
Sbjct: 71  DEDLKRRRVPQAKPVAVEEKVKEQLEAAKPEPVIEEVDLANLAPRKPDWDLKRDVAKKLE 130

Query: 186 KLERRTQKALFKLMEEQEKQKQ 200
           KLE+RTQ+A+ +L+ E+ K ++
Sbjct: 131 KLEKRTQRAIAELIRERLKGQE 147

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BLAST of CsGy1G007500 vs. ExPASy Swiss-Prot
Match: Q9UU80 (Pre-mRNA-splicing factor cwf18 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=cwf18 PE=1 SV=1)

HSP 1 Score: 46.2 bits (108), Expect = 5.3e-04
Identity = 39/137 (28.47%), Postives = 67/137 (48.91%), Query Frame = 0


Query: 65  SVEQVAAARKERLKALRAAQELLNNSDEKNSGGEDKENGATEDSDETNLN-MKFRNYVPH 124
           S+++VA +RK+RL  LR  ++L N                T DS E   N ++ RNY P 
Sbjct: 3   SLDEVAESRKQRLAELRKIKQLENK---------------TRDSQEVQKNVIEHRNYDPE 62

Query: 125 DKELQEGKLAPPVLPKFEDPVTSEPPQ-------------LKEDPFVNIAPKKPNWDLRR 184
            +  + G + PP + +  + ++ E  +             ++E   V + PKKP WDL R
Sbjct: 63  VQAPKMGFVEPPNMIESVEALSKEIEEKTKRKIEEQSSVPVEELDLVTLRPKKPTWDLER 122

Query: 185 DVQKKLDKLERRTQKAL 188
           D+++++  LE + Q A+
Sbjct: 123 DLKERMRSLETQNQNAI 124

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BLAST of CsGy1G007500 vs. NCBI nr
Match: XP_004137537.1 (coiled-coil domain-containing protein 12 [Cucumis sativus] >XP_031743618.1 coiled-coil domain-containing protein 12 [Cucumis sativus] >KGN64229.2 hypothetical protein Csa_013562 [Cucumis sativus])

HSP 1 Score: 291 bits (745), Expect = 5.50e-98
Identity = 153/153 (100.00%), Postives = 153/153 (100.00%), Query Frame = 0


Query: 59  MATEEDSVEQVAAARKERLKALRAAQELLNNSDEKNSGGEDKENGATEDSDETNLNMKFR 118
           MATEEDSVEQVAAARKERLKALRAAQELLNNSDEKNSGGEDKENGATEDSDETNLNMKFR
Sbjct: 1   MATEEDSVEQVAAARKERLKALRAAQELLNNSDEKNSGGEDKENGATEDSDETNLNMKFR 60

Query: 119 NYVPHDKELQEGKLAPPVLPKFEDPVTSEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDK 178
           NYVPHDKELQEGKLAPPVLPKFEDPVTSEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDK
Sbjct: 61  NYVPHDKELQEGKLAPPVLPKFEDPVTSEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDK 120

Query: 179 LERRTQKALFKLMEEQEKQKQAAEGDNDENGAE 211
           LERRTQKALFKLMEEQEKQKQAAEGDNDENGAE
Sbjct: 121 LERRTQKALFKLMEEQEKQKQAAEGDNDENGAE 153

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BLAST of CsGy1G007500 vs. NCBI nr
Match: XP_038894163.1 (coiled-coil domain-containing protein 12 [Benincasa hispida])

HSP 1 Score: 272 bits (696), Expect = 1.65e-90
Identity = 142/153 (92.81%), Postives = 150/153 (98.04%), Query Frame = 0


Query: 59  MATEEDSVEQVAAARKERLKALRAAQELLNNSDEKNSGGEDKENGATEDSDETNLNMKFR 118
           MATEEDSVEQVAAARKERL+ALRAAQELLN SDEKNSGGEDKENGAT D++ETNLNMKFR
Sbjct: 1   MATEEDSVEQVAAARKERLRALRAAQELLNASDEKNSGGEDKENGATADAEETNLNMKFR 60

Query: 119 NYVPHDKELQEGKLAPPVLPKFEDPVTSEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDK 178
           NYVPHDKELQEGKLAPPVLPKFEDPVT+EP QLKEDPFVNIAPKKPNWDLRRDVQKKLDK
Sbjct: 61  NYVPHDKELQEGKLAPPVLPKFEDPVTTEPAQLKEDPFVNIAPKKPNWDLRRDVQKKLDK 120

Query: 179 LERRTQKALFKLMEEQEKQKQAAEGDNDENGAE 211
           LERRTQKAL+KLMEEQEKQKQ+AEGD+D+NGAE
Sbjct: 121 LERRTQKALYKLMEEQEKQKQSAEGDDDQNGAE 153

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BLAST of CsGy1G007500 vs. NCBI nr
Match: XP_008437152.1 (PREDICTED: coiled-coil domain-containing protein 12 [Cucumis melo] >XP_008437160.1 PREDICTED: coiled-coil domain-containing protein 12 [Cucumis melo] >TYJ99079.1 coiled-coil domain-containing protein 12 [Cucumis melo var. makuwa])

HSP 1 Score: 271 bits (694), Expect = 3.22e-90
Identity = 143/153 (93.46%), Postives = 148/153 (96.73%), Query Frame = 0


Query: 59  MATEEDSVEQVAAARKERLKALRAAQELLNNSDEKNSGGEDKENGATEDSDETNLNMKFR 118
           MATEEDS EQVAAARKERLKALRAAQELLN SDEKNS GEDKENGAT D+DETNLNMKFR
Sbjct: 1   MATEEDSFEQVAAARKERLKALRAAQELLNASDEKNSVGEDKENGATADTDETNLNMKFR 60

Query: 119 NYVPHDKELQEGKLAPPVLPKFEDPVTSEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDK 178
           NYVPHDKELQEGKLAPPVLPKFEDPVT+EPPQ KEDPFVNIAPKKPNWDLRRDVQKKLDK
Sbjct: 61  NYVPHDKELQEGKLAPPVLPKFEDPVTTEPPQQKEDPFVNIAPKKPNWDLRRDVQKKLDK 120

Query: 179 LERRTQKALFKLMEEQEKQKQAAEGDNDENGAE 211
           LERRTQKAL+KLMEEQEKQKQAAEGD+D+NGAE
Sbjct: 121 LERRTQKALYKLMEEQEKQKQAAEGDDDQNGAE 153

[Close]

BLAST of CsGy1G007500 vs. NCBI nr
Match: KAG6584286.1 (Coiled-coil domain-containing protein 12, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 266 bits (680), Expect = 4.36e-88
Identity = 137/150 (91.33%), Postives = 146/150 (97.33%), Query Frame = 0


Query: 59  MATEEDSVEQVAAARKERLKALRAAQELLNNSDEKNSGGEDKENGATEDSDETNLNMKFR 118
           MATE+DSVEQVAAARKERL+ALRAAQELLN SDEKNSGGEDKENGATED +ETNL+MKFR
Sbjct: 1   MATEDDSVEQVAAARKERLRALRAAQELLNTSDEKNSGGEDKENGATEDPEETNLSMKFR 60

Query: 119 NYVPHDKELQEGKLAPPVLPKFEDPVTSEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDK 178
           NYVPHDKELQEGKL PPVLPKFEDPV +EPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDK
Sbjct: 61  NYVPHDKELQEGKLVPPVLPKFEDPVATEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDK 120

Query: 179 LERRTQKALFKLMEEQEKQKQAAEGDNDEN 208
           LERRTQKAL+KLMEEQEKQKQ+AEGD+D+N
Sbjct: 121 LERRTQKALYKLMEEQEKQKQSAEGDDDQN 150

[Close]

BLAST of CsGy1G007500 vs. NCBI nr
Match: XP_023520254.1 (coiled-coil domain-containing protein 12-like [Cucurbita pepo subsp. pepo] >XP_023520255.1 coiled-coil domain-containing protein 12-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 261 bits (666), Expect = 6.53e-86
Identity = 137/153 (89.54%), Postives = 146/153 (95.42%), Query Frame = 0


Query: 59  MATEEDSVEQVAAARKERLKALRAAQELLNNSDEKNSGGEDKENGATEDSD---ETNLNM 118
           MATE+DSVEQVAAARKERL+ALRAAQELLN SDEKNSGGEDKENGATED +   ETNL+M
Sbjct: 1   MATEDDSVEQVAAARKERLRALRAAQELLNTSDEKNSGGEDKENGATEDPEDPEETNLSM 60

Query: 119 KFRNYVPHDKELQEGKLAPPVLPKFEDPVTSEPPQLKEDPFVNIAPKKPNWDLRRDVQKK 178
           KFRNYVPHDKELQEGKL PPVLPKFEDPV +EPPQLKEDPFVNIAPKKPNWDLRRDVQKK
Sbjct: 61  KFRNYVPHDKELQEGKLVPPVLPKFEDPVATEPPQLKEDPFVNIAPKKPNWDLRRDVQKK 120

Query: 179 LDKLERRTQKALFKLMEEQEKQKQAAEGDNDEN 208
           LDKLERRTQKAL+KLMEEQEKQKQ+AEGD+D+N
Sbjct: 121 LDKLERRTQKALYKLMEEQEKQKQSAEGDDDQN 153

[Close]

BLAST of CsGy1G007500 vs. ExPASy TrEMBL
Match: A0A0A0LR08 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G043260 PE=4 SV=1)

HSP 1 Score: 370 bits (950), Expect = 6.41e-129
Identity = 194/194 (100.00%), Postives = 194/194 (100.00%), Query Frame = 0


Query: 18  MRQKGFCARKKHSFFSLPPLLEASCLLCLVIFVSGILRTKAMATEEDSVEQVAAARKERL 77
           MRQKGFCARKKHSFFSLPPLLEASCLLCLVIFVSGILRTKAMATEEDSVEQVAAARKERL
Sbjct: 1   MRQKGFCARKKHSFFSLPPLLEASCLLCLVIFVSGILRTKAMATEEDSVEQVAAARKERL 60

Query: 78  KALRAAQELLNNSDEKNSGGEDKENGATEDSDETNLNMKFRNYVPHDKELQEGKLAPPVL 137
           KALRAAQELLNNSDEKNSGGEDKENGATEDSDETNLNMKFRNYVPHDKELQEGKLAPPVL
Sbjct: 61  KALRAAQELLNNSDEKNSGGEDKENGATEDSDETNLNMKFRNYVPHDKELQEGKLAPPVL 120

Query: 138 PKFEDPVTSEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDKLERRTQKALFKLMEEQEKQ 197
           PKFEDPVTSEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDKLERRTQKALFKLMEEQEKQ
Sbjct: 121 PKFEDPVTSEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDKLERRTQKALFKLMEEQEKQ 180

Query: 198 KQAAEGDNDENGAE 211
           KQAAEGDNDENGAE
Sbjct: 181 KQAAEGDNDENGAE 194

[Close]

BLAST of CsGy1G007500 vs. ExPASy TrEMBL
Match: A0A1S3ATB1 (coiled-coil domain-containing protein 12 OS=Cucumis melo OX=3656 GN=LOC103482658 PE=4 SV=1)

HSP 1 Score: 271 bits (694), Expect = 1.56e-90
Identity = 143/153 (93.46%), Postives = 148/153 (96.73%), Query Frame = 0


Query: 59  MATEEDSVEQVAAARKERLKALRAAQELLNNSDEKNSGGEDKENGATEDSDETNLNMKFR 118
           MATEEDS EQVAAARKERLKALRAAQELLN SDEKNS GEDKENGAT D+DETNLNMKFR
Sbjct: 1   MATEEDSFEQVAAARKERLKALRAAQELLNASDEKNSVGEDKENGATADTDETNLNMKFR 60

Query: 119 NYVPHDKELQEGKLAPPVLPKFEDPVTSEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDK 178
           NYVPHDKELQEGKLAPPVLPKFEDPVT+EPPQ KEDPFVNIAPKKPNWDLRRDVQKKLDK
Sbjct: 61  NYVPHDKELQEGKLAPPVLPKFEDPVTTEPPQQKEDPFVNIAPKKPNWDLRRDVQKKLDK 120

Query: 179 LERRTQKALFKLMEEQEKQKQAAEGDNDENGAE 211
           LERRTQKAL+KLMEEQEKQKQAAEGD+D+NGAE
Sbjct: 121 LERRTQKALYKLMEEQEKQKQAAEGDDDQNGAE 153

[Close]

BLAST of CsGy1G007500 vs. ExPASy TrEMBL
Match: A0A5D3BJ95 (Coiled-coil domain-containing protein 12 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G002830 PE=4 SV=1)

HSP 1 Score: 271 bits (694), Expect = 1.56e-90
Identity = 143/153 (93.46%), Postives = 148/153 (96.73%), Query Frame = 0


Query: 59  MATEEDSVEQVAAARKERLKALRAAQELLNNSDEKNSGGEDKENGATEDSDETNLNMKFR 118
           MATEEDS EQVAAARKERLKALRAAQELLN SDEKNS GEDKENGAT D+DETNLNMKFR
Sbjct: 1   MATEEDSFEQVAAARKERLKALRAAQELLNASDEKNSVGEDKENGATADTDETNLNMKFR 60

Query: 119 NYVPHDKELQEGKLAPPVLPKFEDPVTSEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDK 178
           NYVPHDKELQEGKLAPPVLPKFEDPVT+EPPQ KEDPFVNIAPKKPNWDLRRDVQKKLDK
Sbjct: 61  NYVPHDKELQEGKLAPPVLPKFEDPVTTEPPQQKEDPFVNIAPKKPNWDLRRDVQKKLDK 120

Query: 179 LERRTQKALFKLMEEQEKQKQAAEGDNDENGAE 211
           LERRTQKAL+KLMEEQEKQKQAAEGD+D+NGAE
Sbjct: 121 LERRTQKALYKLMEEQEKQKQAAEGDDDQNGAE 153

[Close]

BLAST of CsGy1G007500 vs. ExPASy TrEMBL
Match: A0A6J1DLK0 (coiled-coil domain-containing protein 12 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111022269 PE=4 SV=1)

HSP 1 Score: 258 bits (658), Expect = 4.88e-85
Identity = 133/153 (86.93%), Postives = 145/153 (94.77%), Query Frame = 0


Query: 59  MATEEDSVEQVAAARKERLKALRAAQELLNNSDEKNSGGEDKENGATEDSDETNLNMKFR 118
           MATEEDSVEQVAAARKERL+ALRAAQELLN  DEK SGGEDK+NG  ED++ETNL+MKFR
Sbjct: 1   MATEEDSVEQVAAARKERLRALRAAQELLNTPDEKTSGGEDKDNGVIEDTEETNLSMKFR 60

Query: 119 NYVPHDKELQEGKLAPPVLPKFEDPVTSEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDK 178
           NYVPHDKELQEGKLAPPVLPKFEDPV +EPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDK
Sbjct: 61  NYVPHDKELQEGKLAPPVLPKFEDPVANEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDK 120

Query: 179 LERRTQKALFKLMEEQEKQKQAAEGDNDENGAE 211
           LERRTQKAL+KLM+EQEKQK++AEGD+ +NG E
Sbjct: 121 LERRTQKALYKLMKEQEKQKESAEGDDVQNGTE 153

[Close]

BLAST of CsGy1G007500 vs. ExPASy TrEMBL
Match: A0A6J1E719 (coiled-coil domain-containing protein 12-like OS=Cucurbita moschata OX=3662 GN=LOC111431306 PE=4 SV=1)

HSP 1 Score: 258 bits (658), Expect = 5.22e-85
Identity = 136/153 (88.89%), Postives = 145/153 (94.77%), Query Frame = 0


Query: 59  MATEEDSVEQVAAARKERLKALRAAQELLNNSDEKNSGGEDKENGATEDSD---ETNLNM 118
           MATE+DSVEQVAAARKERL+ALRAAQELLN SDEKNSGGEDKENGATED +   ETNL+M
Sbjct: 1   MATEDDSVEQVAAARKERLRALRAAQELLNASDEKNSGGEDKENGATEDPEDPEETNLSM 60

Query: 119 KFRNYVPHDKELQEGKLAPPVLPKFEDPVTSEPPQLKEDPFVNIAPKKPNWDLRRDVQKK 178
           KFRNYVPHDKELQEGKL PP LPKFEDPV +EPPQLKEDPFVNIAPKKPNWDLRRDVQKK
Sbjct: 61  KFRNYVPHDKELQEGKLVPPELPKFEDPVATEPPQLKEDPFVNIAPKKPNWDLRRDVQKK 120

Query: 179 LDKLERRTQKALFKLMEEQEKQKQAAEGDNDEN 208
           LDKLERRTQKAL+KLMEEQEKQKQ+AEGD+D+N
Sbjct: 121 LDKLERRTQKALYKLMEEQEKQKQSAEGDDDQN 153

[Close]

BLAST of CsGy1G007500 vs. TAIR 10
Match: AT3G05070.1 (CONTAINS InterPro DOMAIN/s: mRNA splicing factor, Cwf18 (InterPro:IPR013169); Has 292 Blast hits to 292 proteins in 153 species: Archae - 0; Bacteria - 0; Metazoa - 118; Fungi - 83; Plants - 38; Viruses - 11; Other Eukaryotes - 42 (source: NCBI BLink). )

HSP 1 Score: 176.8 bits (447), Expect = 1.9e-44
Identity = 101/150 (67.33%), Postives = 116/150 (77.33%), Query Frame = 0


Query: 59  MATEEDSVEQVAAARKERLKALRAAQELLNNSDEKNSGGEDKENGATEDSDETNLNMKFR 118
           MA+E++S+EQ AAARKE LKALRAAQEL           E KE+G  E  +E    MKFR
Sbjct: 1   MASEDESIEQKAAARKEALKALRAAQEL----------SETKEDGEDEAVEEDGPAMKFR 60

Query: 119 NYVPHDKELQEGKLAPPVLPKFEDPVTSEPP--QLKEDPFVNIAPKKPNWDLRRDVQKKL 178
           NYVP  KELQ+GKLAPP LPKFEDP+ + PP  + KEDPFVNIAPKKPNWDLRRDVQKKL
Sbjct: 61  NYVPQAKELQDGKLAPPELPKFEDPIVALPPAVEKKEDPFVNIAPKKPNWDLRRDVQKKL 120

Query: 179 DKLERRTQKALFKLMEEQEKQKQAAEGDND 207
           DKLERRTQKA+ KLMEEQEK+++ AE D +
Sbjct: 121 DKLERRTQKAMHKLMEEQEKEREMAEADGN 140

The following BLAST results are available for this feature:

BLAST of CsGy1G007500 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8WUD4	1.8e-12	37.14	Coiled-coil domain-containing protein 12 OS=Homo sapiens OX=9606 GN=CCDC12 PE=1 ...	[more]
Q8R344	1.2e-11	38.03	Coiled-coil domain-containing protein 12 OS=Mus musculus OX=10090 GN=Ccdc12 PE=1...	[more]
Q9UU80	5.3e-04	28.47	Pre-mRNA-splicing factor cwf18 OS=Schizosaccharomyces pombe (strain 972 / ATCC 2...	[more]

BLAST of CsGy1G007500 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004137537.1	5.50e-98	100.00	coiled-coil domain-containing protein 12 [Cucumis sativus] >XP_031743618.1 coile...	[more]
XP_038894163.1	1.65e-90	92.81	coiled-coil domain-containing protein 12 [Benincasa hispida]	[more]
XP_008437152.1	3.22e-90	93.46	PREDICTED: coiled-coil domain-containing protein 12 [Cucumis melo] >XP_008437160...	[more]
KAG6584286.1	4.36e-88	91.33	Coiled-coil domain-containing protein 12, partial [Cucurbita argyrosperma subsp....	[more]
XP_023520254.1	6.53e-86	89.54	coiled-coil domain-containing protein 12-like [Cucurbita pepo subsp. pepo] >XP_0...	[more]

BLAST of CsGy1G007500 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LR08	6.41e-129	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G043260 PE=4 SV=1	[more]
A0A1S3ATB1	1.56e-90	93.46	coiled-coil domain-containing protein 12 OS=Cucumis melo OX=3656 GN=LOC103482658...	[more]
A0A5D3BJ95	1.56e-90	93.46	Coiled-coil domain-containing protein 12 OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A6J1DLK0	4.88e-85	86.93	coiled-coil domain-containing protein 12 isoform X1 OS=Momordica charantia OX=36...	[more]
A0A6J1E719	5.22e-85	88.89	coiled-coil domain-containing protein 12-like OS=Cucurbita moschata OX=3662 GN=L...	[more]

BLAST of CsGy1G007500 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G05070.1	1.9e-44	67.33	CONTAINS InterPro DOMAIN/s: mRNA splicing factor, Cwf18 (InterPro:IPR013169); Ha...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 69..89
None	No IPR available	COILS	Coil	Coil	coord: 176..211
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 85..114
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 191..205
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 191..211
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 135..159
IPR013169	mRNA splicing factor Cwf18-like	PFAM	PF08315	cwf18	coord: 66..193 e-value: 2.3E-33 score: 115.7
IPR013169	mRNA splicing factor Cwf18-like	PANTHER	PTHR31551	PRE-MRNA-SPLICING FACTOR CWF18	coord: 59..204

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy1G007500.2	CsGy1G007500.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0071014	post-mRNA release spliceosomal complex
cellular_component	GO:0005684	U2-type spliceosomal complex