CsGy1G007390 (gene) Cucumber (Gy14) v2.1
Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.GTACTTCGATTTTACAGCTTCCAATTGAAAATCCAATCATTCTCTCCCACTTTTCTTTTTTGCTTTTAATTGATATTCTTCATCGGAGCAAACAGAGTGGTAGGTGAAGGTTTCTCTTTCTTCGGATCGTAAGATTAGATCCTTTCTTTCTTTCTTCTTCGTCTCAATTTGAAGAACGAGTTCGAACAATTTCGAGTAGATGTCCCCGTCGAATAGTTCACCCAGTGGAGTTAATGGACATGGAGGATCGAATTACATAGAGCATCAAATTTCTAGAATGGATACTCTCGCTGGAATCGCCATAAAGTACGGAGTCGAGGTAAACTTTCGTTGTTCCTTTTTCTTTCATCAAATTTTCTTATGTTGTTCTGTCGGTGTGATTTTTTTTTTTCTTTTCCTGAGTTGACTTGATTCGATTTTGTGAGGTCTGGAAGGGAATTGAAGTTCTTAATTTTGATTCATTTTTTTTGGAGTGATTTCACCACGCCTATCAAACTTTATCCCAATTGTTGCATATGTATATTGTGATGATAATGTTTAATTGGGAGTTTGATTGTATCTATATGTTCAGTTTCGTTTGGAAACTCAGAATGTTTAATATTAGGGCGAAATGTTTATGTGTTTTTTTGTATATCCAATTCCATTAGCTGTGCTTCTCTGCTGGATGTACCTTAACAGTGTTCTGTTGCCCCAAATAGATATCTTCAGCTCTGAACTTCATCGGTTCTGAGGTTACTTTTGGTCGATTGCATTTGGCTGAGGGGAAAAGATGATGAAGCCAAACAATCGAAAGTTCGTATTGTATTTTATATGTTCATAGTCTTTGTTAACTTAAATGCCTCGGTTGCGGGATGAATAATCGATTATTCTTTATTTTCCACTCTATCTTGCTTACTGAAGTTCCCTTCATATTCTTTTAGTTCATAAAATTCTAACTAGGTTGTTAGTAGAGATTTGTTTGAACAATCATATCCTTAGGGTTGATCTTAGACTCATCAATCTATTTGTGATTTAATTGGTGGTTACCCTTATTTTCATTCCTTACCGATGCTCTAAAACGTATAGGTAGCTGACATTAGGAGATTGAATGGCTTGGCAGCAGATCTTCAAATGTTTGCTTTGAAGAAGCTAAGAATTCCTCTACCGGGTAGACATCCGCCATCACCCAGCCTGTCTGATGGTTCTGCCGTTACTGGGTATTTCTTGTTGTCAATTTCTAGTAGAATTTATATCATTTTGTGGATTGTGATTAAGCTTTTAGTTTGTTTATGTTTGCTGCTCATACCTCAAAACTAAAGTCTGTCTTAGTCCAGTTGTCGATGCGCTGTTTTAAGCAAATATAGTATAGATACATTGAGGCTGCGGTTAGGGGTGTGAAATGAGATACTTGGGAATCTTATTGTTGCATATTTACAATCGGGGAACGAATCATGTGCGGAGTTTATTTTATGTTATAGTTATATACATGTTTTGTAGGATTATGACACCCATCTAAGTCGCGCCCAAACAACTTAAGTTGCAATCAACTGTGCATTAGTTTTAGCGATTAGATTGAGATTATTTTGCTGGGGTTATATAAATCATTATGCATAATTTGAGCATTTACCATGCTGATATTCGTTGCATAAAATTAGAACCCCCCTCCATGAACTGTTCAAGTTTTATCTAATGGATTTTTCCAAATGTATTGCAGAAATGGATCTGTAAATGAAGAGCCTCTACATTTAGGCCAACCTACCAATATGCTAAACTCTTTGCAATCTTGGAGATTGAAATCACCAAACCAAAAAGCCTCCCCTGCCATGAGCACATTGCAAAAATACTATGGTCTAAGTTCACAAACTCTTGAGACCTCGTCAGTAGACATGGAGATGTCTGTATACAGAACTGAAAATTCAAATTCCACTGGCGATGGGTTGTTTTCCAGAACCTCTGTACTCTCTACACCACCTCTAAACATTTACTCGAAGACCAGGAAATATGCTGGTAGTTTCTGGACTGATAATGACTCAATAACCGAGCATCTATTACGTACAGATTCCGGAGATGTAGAGAGTGAGAAATCTGATGAGAAATTAGTTCGAAGGCGTCAAAAAGCTGAAGTCGACAATGGTGTTACCACCACAGAGAGATCGCTGAAGGGCGAAAATAGCAACGGAAACTATTTTTCTCCTTCAAATGGAAAGAGTTTAGCCATGAGGCTAAAATCAGGTAGCAGAACTGCTCTGTTATCAGATTCAGATCCAGTGTGGATAAATTCGATTCCAGTAGGATTAGGAGATGATATAATTACTGATGGAACTTCTGAAGTTCATAAATCGTTAAGTACATCAAACCTGAGAGACCAAGATAACAGCAATTCAACGTCTGTATGGTCAACTGCAAAGTGGAGTTTGAAGCCAGACTTGCAAGCTCTCTCAAGCGTTGCAATCTCAAAACCATTGTTTGATGGTTTGCCAAATCCAATCACAGGCCGCAGGAACAAAGCTGCTCTTGATTAACCATGTTCATAACTCTGTTCATATTCTTGCTCGTCGAACTGCTTTGATTCATTCATTTGGGCCGGAAATTCTTTTGGGAAATGTTGTTACATGAATGTATAGGTAGGAAGGCAAAATAAGAGAGAGATTGACGTTTAAGGAAGTTGATAATAGTAAATACAAC GTACTTCGATTTTACAGCTTCCAATTGAAAATCCAATCATTCTCTCCCACTTTTCTTTTTTGCTTTTAATTGATATTCTTCATCGGAGCAAACAGAGTGGTAGGTGAAGGTTTCTCTTTCTTCGGATCGTAAGATTAGATCCTTTCTTTCTTTCTTCTTCGTCTCAATTTGAAGAACGAGTTCGAACAATTTCGAGTAGATGTCCCCGTCGAATAGTTCACCCAGTGGAGTTAATGGACATGGAGGATCGAATTACATAGAGCATCAAATTTCTAGAATGGATACTCTCGCTGGAATCGCCATAAAGTACGGAGTCGAGGTAGCTGACATTAGGAGATTGAATGGCTTGGCAGCAGATCTTCAAATGTTTGCTTTGAAGAAGCTAAGAATTCCTCTACCGGGTAGACATCCGCCATCACCCAGCCTGTCTGATGGTTCTGCCGTTACTGGAAATGGATCTGTAAATGAAGAGCCTCTACATTTAGGCCAACCTACCAATATGCTAAACTCTTTGCAATCTTGGAGATTGAAATCACCAAACCAAAAAGCCTCCCCTGCCATGAGCACATTGCAAAAATACTATGGTCTAAGTTCACAAACTCTTGAGACCTCGTCAGTAGACATGGAGATGTCTGTATACAGAACTGAAAATTCAAATTCCACTGGCGATGGGTTGTTTTCCAGAACCTCTGTACTCTCTACACCACCTCTAAACATTTACTCGAAGACCAGGAAATATGCTGGTAGTTTCTGGACTGATAATGACTCAATAACCGAGCATCTATTACGTACAGATTCCGGAGATGTAGAGAGTGAGAAATCTGATGAGAAATTAGTTCGAAGGCGTCAAAAAGCTGAAGTCGACAATGGTGTTACCACCACAGAGAGATCGCTGAAGGGCGAAAATAGCAACGGAAACTATTTTTCTCCTTCAAATGGAAAGAGTTTAGCCATGAGGCTAAAATCAGGTAGCAGAACTGCTCTGTTATCAGATTCAGATCCAGTGTGGATAAATTCGATTCCAGTAGGATTAGGAGATGATATAATTACTGATGGAACTTCTGAAGTTCATAAATCGTTAAGTACATCAAACCTGAGAGACCAAGATAACAGCAATTCAACGTCTGTATGGTCAACTGCAAAGTGGAGTTTGAAGCCAGACTTGCAAGCTCTCTCAAGCGTTGCAATCTCAAAACCATTGTTTGATGGTTTGCCAAATCCAATCACAGGCCGCAGGAACAAAGCTGCTCTTGATTAACCATGTTCATAACTCTGTTCATATTCTTGCTCGTCGAACTGCTTTGATTCATTCATTTGGGCCGGAAATTCTTTTGGGAAATGTTGTTACATGAATGTATAGGTAGGAAGGCAAAATAAGAGAGAGATTGACGTTTAAGGAAGTTGATAATAGTAAATACAAC ATGTCCCCGTCGAATAGTTCACCCAGTGGAGTTAATGGACATGGAGGATCGAATTACATAGAGCATCAAATTTCTAGAATGGATACTCTCGCTGGAATCGCCATAAAGTACGGAGTCGAGGTAGCTGACATTAGGAGATTGAATGGCTTGGCAGCAGATCTTCAAATGTTTGCTTTGAAGAAGCTAAGAATTCCTCTACCGGGTAGACATCCGCCATCACCCAGCCTGTCTGATGGTTCTGCCGTTACTGGAAATGGATCTGTAAATGAAGAGCCTCTACATTTAGGCCAACCTACCAATATGCTAAACTCTTTGCAATCTTGGAGATTGAAATCACCAAACCAAAAAGCCTCCCCTGCCATGAGCACATTGCAAAAATACTATGGTCTAAGTTCACAAACTCTTGAGACCTCGTCAGTAGACATGGAGATGTCTGTATACAGAACTGAAAATTCAAATTCCACTGGCGATGGGTTGTTTTCCAGAACCTCTGTACTCTCTACACCACCTCTAAACATTTACTCGAAGACCAGGAAATATGCTGGTAGTTTCTGGACTGATAATGACTCAATAACCGAGCATCTATTACGTACAGATTCCGGAGATGTAGAGAGTGAGAAATCTGATGAGAAATTAGTTCGAAGGCGTCAAAAAGCTGAAGTCGACAATGGTGTTACCACCACAGAGAGATCGCTGAAGGGCGAAAATAGCAACGGAAACTATTTTTCTCCTTCAAATGGAAAGAGTTTAGCCATGAGGCTAAAATCAGGTAGCAGAACTGCTCTGTTATCAGATTCAGATCCAGTGTGGATAAATTCGATTCCAGTAGGATTAGGAGATGATATAATTACTGATGGAACTTCTGAAGTTCATAAATCGTTAAGTACATCAAACCTGAGAGACCAAGATAACAGCAATTCAACGTCTGTATGGTCAACTGCAAAGTGGAGTTTGAAGCCAGACTTGCAAGCTCTCTCAAGCGTTGCAATCTCAAAACCATTGTTTGATGGTTTGCCAAATCCAATCACAGGCCGCAGGAACAAAGCTGCTCTTGATTAA MSPSNSSPSGVNGHGGSNYIEHQISRMDTLAGIAIKYGVEVADIRRLNGLAADLQMFALKKLRIPLPGRHPPSPSLSDGSAVTGNGSVNEEPLHLGQPTNMLNSLQSWRLKSPNQKASPAMSTLQKYYGLSSQTLETSSVDMEMSVYRTENSNSTGDGLFSRTSVLSTPPLNIYSKTRKYAGSFWTDNDSITEHLLRTDSGDVESEKSDEKLVRRRQKAEVDNGVTTTERSLKGENSNGNYFSPSNGKSLAMRLKSGSRTALLSDSDPVWINSIPVGLGDDIITDGTSEVHKSLSTSNLRDQDNSNSTSVWSTAKWSLKPDLQALSSVAISKPLFDGLPNPITGRRNKAALD* Homology
BLAST of CsGy1G007390 vs. ExPASy Swiss-Prot
Match: Q6P606 (LysM and putative peptidoglycan-binding domain-containing protein 4 OS=Danio rerio OX=7955 GN=lysmd4 PE=2 SV=2) HSP 1 Score: 49.7 bits (117), Expect = 8.0e-05 Identity = 44/156 (28.21%), Postives = 73/156 (46.79%), Query Frame = 0
BLAST of CsGy1G007390 vs. ExPASy Swiss-Prot
Match: A0JNI1 (LysM and putative peptidoglycan-binding domain-containing protein 1 OS=Bos taurus OX=9913 GN=LYSMD1 PE=2 SV=1) HSP 1 Score: 47.8 bits (112), Expect = 3.0e-04 Identity = 22/47 (46.81%), Postives = 32/47 (68.09%), Query Frame = 0
BLAST of CsGy1G007390 vs. ExPASy Swiss-Prot
Match: Q3B7I8 (LysM and putative peptidoglycan-binding domain-containing protein 2 OS=Xenopus tropicalis OX=8364 GN=lysmd2 PE=2 SV=1) HSP 1 Score: 47.8 bits (112), Expect = 3.0e-04 Identity = 36/100 (36.00%), Postives = 48/100 (48.00%), Query Frame = 0
BLAST of CsGy1G007390 vs. ExPASy Swiss-Prot
Match: Q99LE3 (LysM and putative peptidoglycan-binding domain-containing protein 3 OS=Mus musculus OX=10090 GN=Lysmd3 PE=2 SV=1) HSP 1 Score: 47.4 bits (111), Expect = 4.0e-04 Identity = 29/83 (34.94%), Postives = 42/83 (50.60%), Query Frame = 0
BLAST of CsGy1G007390 vs. ExPASy Swiss-Prot
Match: Q9N012 (LysM and putative peptidoglycan-binding domain-containing protein 1 OS=Macaca fascicularis OX=9541 GN=LYSMD1 PE=2 SV=1) HSP 1 Score: 46.6 bits (109), Expect = 6.8e-04 Identity = 22/47 (46.81%), Postives = 31/47 (65.96%), Query Frame = 0
BLAST of CsGy1G007390 vs. NCBI nr
Match: XP_004137527.1 (uncharacterized protein LOC101205794 isoform X1 [Cucumis sativus]) HSP 1 Score: 675 bits (1742), Expect = 2.43e-244 Identity = 352/352 (100.00%), Postives = 352/352 (100.00%), Query Frame = 0
BLAST of CsGy1G007390 vs. NCBI nr
Match: XP_008467281.1 (PREDICTED: uncharacterized protein LOC103504667 isoform X1 [Cucumis melo] >TYJ99064.1 Peptidoglycan-binding LysM domain-containing protein, putative isoform 1 [Cucumis melo var. makuwa]) HSP 1 Score: 629 bits (1623), Expect = 3.31e-226 Identity = 332/352 (94.32%), Postives = 338/352 (96.02%), Query Frame = 0
BLAST of CsGy1G007390 vs. NCBI nr
Match: XP_038894003.1 (uncharacterized protein LOC120082771 isoform X1 [Benincasa hispida]) HSP 1 Score: 592 bits (1527), Expect = 1.45e-211 Identity = 312/353 (88.39%), Postives = 332/353 (94.05%), Query Frame = 0
BLAST of CsGy1G007390 vs. NCBI nr
Match: XP_011650998.1 (uncharacterized protein LOC101205794 isoform X2 [Cucumis sativus] >KAE8652564.1 hypothetical protein Csa_013768 [Cucumis sativus]) HSP 1 Score: 571 bits (1471), Expect = 6.20e-204 Identity = 297/297 (100.00%), Postives = 297/297 (100.00%), Query Frame = 0
BLAST of CsGy1G007390 vs. NCBI nr
Match: KAG6572989.1 (LysM and putative peptidoglycan-binding domain-containing protein 4, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 542 bits (1396), Expect = 1.28e-191 Identity = 293/355 (82.54%), Postives = 317/355 (89.30%), Query Frame = 0
BLAST of CsGy1G007390 vs. ExPASy TrEMBL
Match: A0A0A0LQZ4 (LysM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G043110 PE=4 SV=1) HSP 1 Score: 675 bits (1742), Expect = 1.17e-244 Identity = 352/352 (100.00%), Postives = 352/352 (100.00%), Query Frame = 0
BLAST of CsGy1G007390 vs. ExPASy TrEMBL
Match: A0A5D3BJ15 (Peptidoglycan-binding LysM domain-containing protein, putative isoform 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G002680 PE=4 SV=1) HSP 1 Score: 629 bits (1623), Expect = 1.60e-226 Identity = 332/352 (94.32%), Postives = 338/352 (96.02%), Query Frame = 0
BLAST of CsGy1G007390 vs. ExPASy TrEMBL
Match: A0A1S3CUG8 (uncharacterized protein LOC103504667 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103504667 PE=4 SV=1) HSP 1 Score: 629 bits (1623), Expect = 1.60e-226 Identity = 332/352 (94.32%), Postives = 338/352 (96.02%), Query Frame = 0
BLAST of CsGy1G007390 vs. ExPASy TrEMBL
Match: A0A6J1C8W2 (uncharacterized protein LOC111009048 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111009048 PE=4 SV=1) HSP 1 Score: 542 bits (1396), Expect = 6.21e-192 Identity = 291/353 (82.44%), Postives = 308/353 (87.25%), Query Frame = 0
BLAST of CsGy1G007390 vs. ExPASy TrEMBL
Match: A0A6J1K4A2 (uncharacterized protein LOC111490532 OS=Cucurbita maxima OX=3661 GN=LOC111490532 PE=4 SV=1) HSP 1 Score: 538 bits (1385), Expect = 2.83e-190 Identity = 291/354 (82.20%), Postives = 315/354 (88.98%), Query Frame = 0
BLAST of CsGy1G007390 vs. TAIR 10
Match: AT5G08200.1 (peptidoglycan-binding LysM domain-containing protein ) HSP 1 Score: 247.7 bits (631), Expect = 1.4e-65 Identity = 169/366 (46.17%), Postives = 222/366 (60.66%), Query Frame = 0
BLAST of CsGy1G007390 vs. TAIR 10
Match: AT5G23130.1 (Peptidoglycan-binding LysM domain-containing protein ) HSP 1 Score: 231.1 bits (588), Expect = 1.4e-60 Identity = 154/354 (43.50%), Postives = 216/354 (61.02%), Query Frame = 0
BLAST of CsGy1G007390 vs. TAIR 10
Match: AT1G55000.1 (peptidoglycan-binding LysM domain-containing protein ) HSP 1 Score: 45.8 bits (107), Expect = 8.2e-05 Identity = 19/47 (40.43%), Postives = 33/47 (70.21%), Query Frame = 0
BLAST of CsGy1G007390 vs. TAIR 10
Match: AT1G55000.2 (peptidoglycan-binding LysM domain-containing protein ) HSP 1 Score: 45.8 bits (107), Expect = 8.2e-05 Identity = 19/47 (40.43%), Postives = 33/47 (70.21%), Query Frame = 0
BLAST of CsGy1G007390 vs. TAIR 10
Match: AT1G55000.3 (peptidoglycan-binding LysM domain-containing protein ) HSP 1 Score: 45.8 bits (107), Expect = 8.2e-05 Identity = 19/47 (40.43%), Postives = 33/47 (70.21%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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