CsGy1G007320 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy1G007320
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	Nascent polypeptide-associated complex subunit beta
Location	Gy14Chr1: 4696390 .. 4700311 (+)
RNA-Seq Expression	CsGy1G007320
Synteny	CsGy1G007320

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CTAATATATGAAGCATTAGCGCCGTCTCATACTGAGGCTATCTTCTACCTCTTCAAACCACTGAGACTCAAAAACCTCAATATCACCTTCAAGGTAGAACTCTTCCTTCCATTTTCGCTTCACTTCTCATCGTTATCTCAATCCTCTCTTGTTCTTTCTATTTTCGGATTGCTCTTCTTCATCTTCGACGATGAATTTCTTCTGCCGAGGGTTCTACTGTTGTGTTTTTTCATTTTATAGCCGGATTTTGTTTTTGCTTCTTTTGAGGCGTTCGCGTTCATCGATTTGATATGTATTTATGTCTTTGAAACTTCTCGTCATTGATTTTCGTCTTTATATGTTAAACTTGTTTGTGTTATTGAATTTATTGATTACTTTACAGATCGTGTTTGTGTCTATACCATCTGTAAGCGTTCTTCGATTGTGAGTTTAGAAGTGAAGTAAAGAACAGCTTAGGTTAGAGGATTTAGTGTAGCCGTAGTTACTGTACTGAACAGGAGCTTACATTACATGAACATTACATTTCTTGTATTTTTCTCAGCGATTGTGATAAATGATGAACGGATAAATTTATACCTTGATAATGTTCAAGGTAGACCTCTTCCTTCCATTTTCGGATTGCTTTTCTTCATCTTCGACGATGAACATCATCTGCCGAGGGTTCTACTGTGGCGTATTTTCATTTTCTAACCGGATTTTGTTTTTACTTCTGTTGAGGTGTTTGTGTTCATCGATTTGATATGTATGTACGTGTTTGAAACTTCTCGTTATTCATTTCTTTGTGTAATTGGCTTTCTTGATTATTTTACAGAACGTGTTTTAATCTTCACTTCTCATCGTTATCTAAATCTTCTCTTGTTCTTACTCATTTCGGATTGCTCTTCTTCATCTTCGACGATGGACTTCTTATGCCGAGGTGTTTGTGTTATTGGATTTCTTGATTATTTTACAGAACGTGTTTAAATCTCTACTGTTCTTTAATTGCGTTTTTCGATTGTGAGTTTAGAAGTGAAGGAAAGAACAGCTTAGGTTATAGGATTTAGTGGAGCTGAAGTTACTGTACGGATGAGGAGCTTACATTTCATGAACATTATATTTTTTGTATTTTTCTCAAAGATTATGATAACACGATGAACAGATAATTTATACTATAGAAATTAACTTTTTGGATAAGCTAGGGCTTGATAACGTATTCTAGTGCTGTTTTCCTTTTAGATACTGCAACTATTACATGAATTTTCGGATGAGATTTCTGTTTGTTATAGTTTTTAAAAAACGTGACGAAGCACCTGTATGTGTTTATCTGTTTTAAATTTCTTTTCTTCGTTAGCGCTTTTATGTTCTTTAATTGCTGTAATATTTCAAGTTCGAATGTAGTTTTTAATCATTTTTCAAGTTCTCAATTCTCATAAATTTTATCCTTTTTGTTTCATATTAAAAGAAACAATCTCATAAATCTTATCCTTGTTCTTCCTATGTTGTGCAGATGGATCATACGAAGCTCCAGAAAATGGCTGGTGCAGTTCGCACTGGTGGAAAAGGTAGCGTGAGAAGGTTGGTTGCCTTTTTATCTTTTGAAAGTTCCGAAAAGTGTAAGAAGATTTAATCATTTGTCGCTTGATTTATTTAATAAGGAATCATAAATTATTTCAACCGTAAGATGGAACTCTTATAAAATTTACCTGGATGTTTATCATTCTAGTTTTTTTTTGGTAAATAATTTATTTGAACCATGCTGATATCCATTCTCCCATCCATTTCTGCTTTTCTCAATTCTCTCATTCATCGTTCTATTAATTTCAGCCATGCATTTTTATACTAACTAAGAATTTCAATAGCTCGTAGTTATTCTTAAAATTTCTGATATGCAGATAATGTTTTACGACAACATATATAATTTTTCTTTTTCCAATTTTTGTCAATTTAAATGGTACTTTTTAATTGACTAATGAGTGAATATACTAACATAAATTCCATGCTTGTTTGAGTGTTGGATCTTTCAGTTTGGCATATGTTCTTGATATTTCTCGTGCTTACTGTAATGGAGGCGCTGTTGAAATATCATTTTCATCTTCTTTTCTTTAAGATCAATCGTTTGCTTTCTTAATTTTTAGTTTTCTTTCTTATTTTGTCAATTAAAGGAAGAAGAAGGCTGTCCACAAGACAACTACCACAGACGATAAACGGCTTCAAAGTACCTTGAAGAGAATAGGAGTTAATGCAATCCCTGCTATTGAGGAAGTCAACATTTTCAAGGATGATGTAGTTATTCAATTTACTAACCCAAAGGGTAAATTTATGCAACTATATATATACGCATGGTTGTTTACCATCAATATCTTGATATGAAATTCATTTAGTTGTTTCTTGTTATCTATTTCAGTTCAGGCTTCTATTGCGGCAAACACATGGGTTGTTAGTGGTTCTCCTCAAACGAAAAGTATGTCTTCTTACTCTCACCACATTTGCATATAATAAACATTTAACTGATCTCATGTTCTAAATTCTAGGGCATTCTTGTAGTAGATATATCGAAAAAACTGAAACAATTTTTTCTTGCAAATTTTGGTCATACGTTTTAAAAAGAACAAATAGTCCCTAAATGAAAATGACACTACAGAGATGTCAACAGACTTGGCTGTTAGTAATATAACTTCTCCTATTTAATTGTATAATCAATATTGCTACCCTATTATTTCAATCATTCTTTGATATCTCAAACCATTTTTAATACAGTGATGAATATTAATTATCGAAAGTTTTCCTAAAGTGCTGTCATTTGATGAAAAAACCACCGCTTACTTTTGTAAGACCAAATTTTGTTATTTGATGAGAAAAAAAAGCTTTATTTGAACGGTTACATGTTTGTAGCTGTATTGACAATGCTGTTGATTGTACACGAACCTTCAAGTATGTTTAGGAATTTAATATGATTAGTACACTGTATCGTTTGAATTAAATATGAAGCTATTCTAATGAAGCATGTTACAAAATAGCCTTGAAACTTTTTCAGATAGTTCTTTTTAGAAAATTTAAATTAGTCTTGAATCTCTTATCCTTTTTTCTTCTTCTTTTAATGTGCTTTTGGAATGCGGTAAAGTTCTTCGGGATTAGGATAATATTGTAAATGATCTAATGCAAAATAACATGCTGCCTGCTGATGACTGCCGTTGGCTTGGAATTTGAAACAAGGCTAATATGGTTTCCTTCAACTATGTGTAAAACAAAGGGTTTACTTCAATTGTGACATTTGATGTGACAGTATTTTTTTTAACATGTTTGAAGGAGTACACTTTGTTAATTTATTGAATGAATGCGTTCTTACCAAAAGTTATTTCAAAAAGTCATGCTAGAGAATGACACTTCCTAGTTGCCTCTCTTAGGGTGGCATCTTCATGCTAGAAAATGACACTCCGCATACATTTTTTTTCTTCCCTCAATTAAAAAGATGTTTTCATATAAGGAAAACAAACATGGCATTGGGTGTTTTAGTTTTGACTTGTTTGTTTCTCATGGTGAAGCTTTTCTATTAACTCTGGCCAAGATTTTCATTGCGCTATTTGCCTATCTTTTGTTATTATGTATCACGACCAGCTCTAATATTTTAATTTCTTCTCTCAGAATTGCAGGATATTCTGCCCGGAATTATCAACCAATTGGGTAAGTACACGTGATTGCATTTTTGTGTTCCATCCTGAGTCCTACCTAAAATAACAAGACTTGTTTACGTGTTTAAATTTTAGGACCCGATAACTTAGACAACTTGAGGAAGTTGGCTGAGCAGTTCCAGAAGCAAGCACCTGGAGTAGGTGCTGGTGCAGCAGCAGCTGCCGCCAATGGTGAGGATGATGACGATGATGTTCCTGACCTTGTTGAAGGGCAGACCTTCGAAGCTGCTGCAGAAGAGAAGCAAGCCTCCTAG

mRNA sequence

CTAATATATGAAGCATTAGCGCCGTCTCATACTGAGGCTATCTTCTACCTCTTCAAACCACTGAGACTCAAAAACCTCAATATCACCTTCAAGAACGTGTTTTAATCTTCACTTCTCATCGTTATCTAAATCTTCTCTTGTTCTTACTCATTTCGGATTGCTCTTCTTCATCTTCGACGATGGACTTCTTATGCCGAGATGGATCATACGAAGCTCCAGAAAATGGCTGGTGCAGTTCGCACTGGTGGAAAAGGTAGCGTGAGAAGGAAGAAGAAGGCTGTCCACAAGACAACTACCACAGACGATAAACGGCTTCAAAGTACCTTGAAGAGAATAGGAGTTAATGCAATCCCTGCTATTGAGGAAGTCAACATTTTCAAGGATGATGTAGTTATTCAATTTACTAACCCAAAGGTTCAGGCTTCTATTGCGGCAAACACATGGGTTGTTAGTGGTTCTCCTCAAACGAAAAAATTGCAGGATATTCTGCCCGGAATTATCAACCAATTGGGACCCGATAACTTAGACAACTTGAGGAAGTTGGCTGAGCAGTTCCAGAAGCAAGCACCTGGAGTAGGTGCTGGTGCAGCAGCAGCTGCCGCCAATGGTGAGGATGATGACGATGATGTTCCTGACCTTGTTGAAGGGCAGACCTTCGAAGCTGCTGCAGAAGAGAAGCAAGCCTCCTAG

Coding sequence (CDS)

ATGGATCATACGAAGCTCCAGAAAATGGCTGGTGCAGTTCGCACTGGTGGAAAAGGTAGCGTGAGAAGGAAGAAGAAGGCTGTCCACAAGACAACTACCACAGACGATAAACGGCTTCAAAGTACCTTGAAGAGAATAGGAGTTAATGCAATCCCTGCTATTGAGGAAGTCAACATTTTCAAGGATGATGTAGTTATTCAATTTACTAACCCAAAGGTTCAGGCTTCTATTGCGGCAAACACATGGGTTGTTAGTGGTTCTCCTCAAACGAAAAAATTGCAGGATATTCTGCCCGGAATTATCAACCAATTGGGACCCGATAACTTAGACAACTTGAGGAAGTTGGCTGAGCAGTTCCAGAAGCAAGCACCTGGAGTAGGTGCTGGTGCAGCAGCAGCTGCCGCCAATGGTGAGGATGATGACGATGATGTTCCTGACCTTGTTGAAGGGCAGACCTTCGAAGCTGCTGCAGAAGAGAAGCAAGCCTCCTAG

Protein sequence

MDHTKLQKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIFKDDVVIQFTNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQKQAPGVGAGAAAAAANGEDDDDDVPDLVEGQTFEAAAEEKQAS*

Homology

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BLAST of CsGy1G007320 vs. ExPASy Swiss-Prot
Match: Q9CAT7 (Nascent polypeptide-associated complex subunit beta OS=Arabidopsis thaliana OX=3702 GN=At1g73230 PE=2 SV=1)

HSP 1 Score: 246.9 bits (629), Expect = 1.6e-64
Identity = 131/160 (81.88%), Postives = 140/160 (87.50%), Query Frame = 0


Query: 1   MDHTKLQKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 60
           M+  KL KMA  VRTGGKG+VRRKKKAVHKTTTTDDKRLQSTLKR+GVN+IPAIEEVNIF
Sbjct: 1   MNREKLMKMANTVRTGGKGTVRRKKKAVHKTTTTDDKRLQSTLKRVGVNSIPAIEEVNIF 60

Query: 61  KDDVVIQFTNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ 120
           KDDVVIQF NPKVQASIAANTWVVSG+PQTKKLQDILP II+QLGPDNLDNL+KLAEQFQ
Sbjct: 61  KDDVVIQFINPKVQASIAANTWVVSGTPQTKKLQDILPQIISQLGPDNLDNLKKLAEQFQ 120

Query: 121 KQAPGVGAGAAAAAANGEDDDDDVPDLVEGQTFEAAAEEK 161
           KQAP  GAG   A    EDDDDDVPDLV G+TFE  A E+
Sbjct: 121 KQAP--GAGDVPATIQEEDDDDDVPDLVVGETFETPATEE 158

[Close]

BLAST of CsGy1G007320 vs. ExPASy Swiss-Prot
Match: Q9SMW7 (Basic transcription factor 3 OS=Arabidopsis thaliana OX=3702 GN=BTF3 PE=1 SV=1)

HSP 1 Score: 243.0 bits (619), Expect = 2.3e-63
Identity = 132/160 (82.50%), Postives = 142/160 (88.75%), Query Frame = 0


Query: 1   MDHTKLQKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 60
           M+  KL KMA  VRTGGKG+VRRKKKAVHKT TTDDKRLQSTLKRIGVN+IPAIEEVNIF
Sbjct: 1   MNREKLMKMANTVRTGGKGTVRRKKKAVHKTNTTDDKRLQSTLKRIGVNSIPAIEEVNIF 60

Query: 61  KDDVVIQFTNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ 120
           KDDVVIQF NPKVQASIAANTWVVSGSPQTKKLQDILP II+QLGPDN+DNL+KLAEQFQ
Sbjct: 61  KDDVVIQFINPKVQASIAANTWVVSGSPQTKKLQDILPQIISQLGPDNMDNLKKLAEQFQ 120

Query: 121 KQAPGVGAGAAAAAANGEDDDDDVPDLVEGQTFEAAAEEK 161
           KQA   G G AA+A   E+DDDDVP+LV G+TFE AAEEK
Sbjct: 121 KQAS--GEGNAASATIQEEDDDDVPELV-GETFETAAEEK 157

[Close]

BLAST of CsGy1G007320 vs. ExPASy Swiss-Prot
Match: Q6PC91 (Transcription factor BTF3 homolog 4 OS=Danio rerio OX=7955 GN=btf3l4 PE=2 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 8.2e-37
Identity = 87/161 (54.04%), Postives = 118/161 (73.29%), Query Frame = 0


Query: 1   MDHTKLQKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 60
           M+  KL K+   VR GGKG+ RRKKK VH+T T DDK+LQS+LK++ VN I  IEEVN+ 
Sbjct: 1   MNQEKLAKLQAQVRIGGKGTARRKKKVVHRTATADDKKLQSSLKKLVVNNIAGIEEVNMI 60

Query: 61  KDD-VVIQFTNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQF 120
           KDD  VI F NPKVQAS++ANT+ ++G  +TK+L ++LPGI++QLG D+L +LRKLAEQF
Sbjct: 61  KDDGTVIHFNNPKVQASLSANTFAITGHAETKQLTEMLPGILSQLGADSLTSLRKLAEQF 120

Query: 121 QKQAPGVGAGAAAAAANGEDDDDDVPDLVEGQTFEAAAEEK 161
            +Q   V    A  A + +++DDDVPDLVE   F+ A++ +
Sbjct: 121 PRQ---VLDNKAPKAEDIDEEDDDVPDLVE--NFDEASKNE 156

[Close]

BLAST of CsGy1G007320 vs. ExPASy Swiss-Prot
Match: P20290 (Transcription factor BTF3 OS=Homo sapiens OX=9606 GN=BTF3 PE=1 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 8.2e-37
Identity = 86/161 (53.42%), Postives = 114/161 (70.81%), Query Frame = 0


Query: 1   MDHTKLQKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 60
           M+  KL K+   VR GGKG+ RRKKK VH+T T DDK+LQ +LK++GVN I  IEEVN+F
Sbjct: 50  MNQEKLAKLQAQVRIGGKGTARRKKKVVHRTATADDKKLQFSLKKLGVNNISGIEEVNMF 109

Query: 61  KDD-VVIQFTNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQF 120
            +   VI F NPKVQAS+AANT+ ++G  +TK+L ++LP I+NQLG D+L +LR+LAE  
Sbjct: 110 TNQGTVIHFNNPKVQASLAANTFTITGHAETKQLTEMLPSILNQLGADSLTSLRRLAEAL 169

Query: 121 QKQAPGVGAGAAAAAANGEDDDDDVPDLVEGQTFEAAAEEK 161
            KQ+        A  A GEDDDD+VPDLVE   F+ A++ +
Sbjct: 170 PKQS----VDGKAPLATGEDDDDEVPDLVE--NFDEASKNE 204

[Close]

BLAST of CsGy1G007320 vs. ExPASy Swiss-Prot
Match: Q64152 (Transcription factor BTF3 OS=Mus musculus OX=10090 GN=Btf3 PE=1 SV=3)

HSP 1 Score: 154.8 bits (390), Expect = 8.2e-37
Identity = 86/161 (53.42%), Postives = 114/161 (70.81%), Query Frame = 0


Query: 1   MDHTKLQKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 60
           M+  KL K+   VR GGKG+ RRKKK VH+T T DDK+LQ +LK++GVN I  IEEVN+F
Sbjct: 48  MNQEKLAKLQAQVRIGGKGTARRKKKVVHRTATADDKKLQFSLKKLGVNNISGIEEVNMF 107

Query: 61  KDD-VVIQFTNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQF 120
            +   VI F NPKVQAS+AANT+ ++G  +TK+L ++LP I+NQLG D+L +LR+LAE  
Sbjct: 108 TNQGTVIHFNNPKVQASLAANTFTITGHAETKQLTEMLPSILNQLGADSLTSLRRLAEAL 167

Query: 121 QKQAPGVGAGAAAAAANGEDDDDDVPDLVEGQTFEAAAEEK 161
            KQ+        A  A GEDDDD+VPDLVE   F+ A++ +
Sbjct: 168 PKQS----VDGKAPLATGEDDDDEVPDLVE--NFDEASKNE 202

[Close]

BLAST of CsGy1G007320 vs. NCBI nr
Match: XP_004137521.1 (nascent polypeptide-associated complex subunit beta [Cucumis sativus] >XP_031743054.1 nascent polypeptide-associated complex subunit beta [Cucumis sativus])

HSP 1 Score: 311 bits (797), Expect = 1.36e-106
Identity = 163/163 (100.00%), Postives = 163/163 (100.00%), Query Frame = 0


Query: 1   MDHTKLQKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 60
           MDHTKLQKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF
Sbjct: 1   MDHTKLQKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 60

Query: 61  KDDVVIQFTNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ 120
           KDDVVIQFTNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ
Sbjct: 61  KDDVVIQFTNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ 120

Query: 121 KQAPGVGAGAAAAAANGEDDDDDVPDLVEGQTFEAAAEEKQAS 163
           KQAPGVGAGAAAAAANGEDDDDDVPDLVEGQTFEAAAEEKQAS
Sbjct: 121 KQAPGVGAGAAAAAANGEDDDDDVPDLVEGQTFEAAAEEKQAS 163

[Close]

BLAST of CsGy1G007320 vs. NCBI nr
Match: XP_008467234.1 (PREDICTED: nascent polypeptide-associated complex subunit beta-like isoform X2 [Cucumis melo])

HSP 1 Score: 305 bits (780), Expect = 5.68e-104
Identity = 162/165 (98.18%), Postives = 162/165 (98.18%), Query Frame = 0


Query: 1   MDHTKLQKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 60
           MDHTKLQKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF
Sbjct: 1   MDHTKLQKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 60

Query: 61  KDDVVIQFTNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ 120
           KDDVVIQFTNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ
Sbjct: 61  KDDVVIQFTNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ 120

Query: 121 KQAPGVGAGAAAAAA--NGEDDDDDVPDLVEGQTFEAAAEEKQAS 163
           KQAPG GAGAAAAAA  NGEDDDDDVPDLVEGQTFEAAAEEKQAS
Sbjct: 121 KQAPGAGAGAAAAAAAANGEDDDDDVPDLVEGQTFEAAAEEKQAS 165

[Close]

BLAST of CsGy1G007320 vs. NCBI nr
Match: XP_016900101.1 (PREDICTED: nascent polypeptide-associated complex subunit beta-like isoform X1 [Cucumis melo])

HSP 1 Score: 305 bits (780), Expect = 6.30e-104
Identity = 162/165 (98.18%), Postives = 162/165 (98.18%), Query Frame = 0


Query: 1   MDHTKLQKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 60
           MDHTKLQKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF
Sbjct: 4   MDHTKLQKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 63

Query: 61  KDDVVIQFTNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ 120
           KDDVVIQFTNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ
Sbjct: 64  KDDVVIQFTNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ 123

Query: 121 KQAPGVGAGAAAAAA--NGEDDDDDVPDLVEGQTFEAAAEEKQAS 163
           KQAPG GAGAAAAAA  NGEDDDDDVPDLVEGQTFEAAAEEKQAS
Sbjct: 124 KQAPGAGAGAAAAAAAANGEDDDDDVPDLVEGQTFEAAAEEKQAS 168

[Close]

BLAST of CsGy1G007320 vs. NCBI nr
Match: XP_038895154.1 (nascent polypeptide-associated complex subunit beta-like [Benincasa hispida])

HSP 1 Score: 298 bits (763), Expect = 2.00e-101
Identity = 158/163 (96.93%), Postives = 159/163 (97.55%), Query Frame = 0


Query: 1   MDHTKLQKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 60
           MDHTKLQKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF
Sbjct: 1   MDHTKLQKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 60

Query: 61  KDDVVIQFTNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ 120
           KDDVVIQFTNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ
Sbjct: 61  KDDVVIQFTNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ 120

Query: 121 KQAPGVGAGAAAAAANGEDDDDDVPDLVEGQTFEAAAEEKQAS 163
           KQAPG GAGAAAAA N EDDDDDVPDLVEGQTFEAAAEE +AS
Sbjct: 121 KQAPGAGAGAAAAA-NAEDDDDDVPDLVEGQTFEAAAEESKAS 162

[Close]

BLAST of CsGy1G007320 vs. NCBI nr
Match: XP_022954733.1 (nascent polypeptide-associated complex subunit beta-like [Cucurbita moschata] >XP_022994949.1 nascent polypeptide-associated complex subunit beta-like [Cucurbita maxima] >XP_023542222.1 nascent polypeptide-associated complex subunit beta-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023542223.1 nascent polypeptide-associated complex subunit beta-like isoform X2 [Cucurbita pepo subsp. pepo] >KAG7012168.1 Basic transcription factor 3 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 292 bits (748), Expect = 3.74e-99
Identity = 155/163 (95.09%), Postives = 157/163 (96.32%), Query Frame = 0


Query: 1   MDHTKLQKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 60
           MDHTKLQKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF
Sbjct: 1   MDHTKLQKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 60

Query: 61  KDDVVIQFTNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ 120
           KDDVVIQFTNPKVQASIAANTWVVSG+PQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ
Sbjct: 61  KDDVVIQFTNPKVQASIAANTWVVSGTPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ 120

Query: 121 KQAPGVGAGAAAAAANGEDDDDDVPDLVEGQTFEAAAEEKQAS 163
           KQAPG GAGAA A    +DDDDDVPDLVEGQTFEAAAEEKQAS
Sbjct: 121 KQAPGAGAGAANA--QDDDDDDDVPDLVEGQTFEAAAEEKQAS 161

[Close]

BLAST of CsGy1G007320 vs. ExPASy TrEMBL
Match: A0A0A0LTU8 (Nascent polypeptide-associated complex subunit beta OS=Cucumis sativus OX=3659 GN=Csa_1G043055 PE=3 SV=1)

HSP 1 Score: 311 bits (797), Expect = 9.14e-106
Identity = 163/163 (100.00%), Postives = 163/163 (100.00%), Query Frame = 0


Query: 1   MDHTKLQKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 60
           MDHTKLQKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF
Sbjct: 77  MDHTKLQKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 136

Query: 61  KDDVVIQFTNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ 120
           KDDVVIQFTNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ
Sbjct: 137 KDDVVIQFTNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ 196

Query: 121 KQAPGVGAGAAAAAANGEDDDDDVPDLVEGQTFEAAAEEKQAS 163
           KQAPGVGAGAAAAAANGEDDDDDVPDLVEGQTFEAAAEEKQAS
Sbjct: 197 KQAPGVGAGAAAAAANGEDDDDDVPDLVEGQTFEAAAEEKQAS 239

[Close]

BLAST of CsGy1G007320 vs. ExPASy TrEMBL
Match: A0A1S3CT31 (Nascent polypeptide-associated complex subunit beta OS=Cucumis melo OX=3656 GN=LOC103504634 PE=3 SV=1)

HSP 1 Score: 305 bits (780), Expect = 2.75e-104
Identity = 162/165 (98.18%), Postives = 162/165 (98.18%), Query Frame = 0


Query: 1   MDHTKLQKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 60
           MDHTKLQKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF
Sbjct: 1   MDHTKLQKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 60

Query: 61  KDDVVIQFTNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ 120
           KDDVVIQFTNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ
Sbjct: 61  KDDVVIQFTNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ 120

Query: 121 KQAPGVGAGAAAAAA--NGEDDDDDVPDLVEGQTFEAAAEEKQAS 163
           KQAPG GAGAAAAAA  NGEDDDDDVPDLVEGQTFEAAAEEKQAS
Sbjct: 121 KQAPGAGAGAAAAAAAANGEDDDDDVPDLVEGQTFEAAAEEKQAS 165

[Close]

BLAST of CsGy1G007320 vs. ExPASy TrEMBL
Match: A0A1S4DVT8 (Nascent polypeptide-associated complex subunit beta OS=Cucumis melo OX=3656 GN=LOC103504634 PE=3 SV=1)

HSP 1 Score: 305 bits (780), Expect = 3.05e-104
Identity = 162/165 (98.18%), Postives = 162/165 (98.18%), Query Frame = 0


Query: 1   MDHTKLQKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 60
           MDHTKLQKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF
Sbjct: 4   MDHTKLQKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 63

Query: 61  KDDVVIQFTNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ 120
           KDDVVIQFTNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ
Sbjct: 64  KDDVVIQFTNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ 123

Query: 121 KQAPGVGAGAAAAAA--NGEDDDDDVPDLVEGQTFEAAAEEKQAS 163
           KQAPG GAGAAAAAA  NGEDDDDDVPDLVEGQTFEAAAEEKQAS
Sbjct: 124 KQAPGAGAGAAAAAAAANGEDDDDDVPDLVEGQTFEAAAEEKQAS 168

[Close]

BLAST of CsGy1G007320 vs. ExPASy TrEMBL
Match: A0A6J1K4A7 (Nascent polypeptide-associated complex subunit beta OS=Cucurbita maxima OX=3661 GN=LOC111490535 PE=3 SV=1)

HSP 1 Score: 292 bits (748), Expect = 1.81e-99
Identity = 155/163 (95.09%), Postives = 157/163 (96.32%), Query Frame = 0


Query: 1   MDHTKLQKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 60
           MDHTKLQKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF
Sbjct: 1   MDHTKLQKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 60

Query: 61  KDDVVIQFTNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ 120
           KDDVVIQFTNPKVQASIAANTWVVSG+PQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ
Sbjct: 61  KDDVVIQFTNPKVQASIAANTWVVSGTPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ 120

Query: 121 KQAPGVGAGAAAAAANGEDDDDDVPDLVEGQTFEAAAEEKQAS 163
           KQAPG GAGAA A    +DDDDDVPDLVEGQTFEAAAEEKQAS
Sbjct: 121 KQAPGAGAGAANA--QDDDDDDDVPDLVEGQTFEAAAEEKQAS 161

[Close]

BLAST of CsGy1G007320 vs. ExPASy TrEMBL
Match: A0A6J1GRY3 (Nascent polypeptide-associated complex subunit beta OS=Cucurbita moschata OX=3662 GN=LOC111456902 PE=3 SV=1)

HSP 1 Score: 292 bits (748), Expect = 1.81e-99
Identity = 155/163 (95.09%), Postives = 157/163 (96.32%), Query Frame = 0


Query: 1   MDHTKLQKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 60
           MDHTKLQKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF
Sbjct: 1   MDHTKLQKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 60

Query: 61  KDDVVIQFTNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ 120
           KDDVVIQFTNPKVQASIAANTWVVSG+PQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ
Sbjct: 61  KDDVVIQFTNPKVQASIAANTWVVSGTPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ 120

Query: 121 KQAPGVGAGAAAAAANGEDDDDDVPDLVEGQTFEAAAEEKQAS 163
           KQAPG GAGAA A    +DDDDDVPDLVEGQTFEAAAEEKQAS
Sbjct: 121 KQAPGAGAGAANA--QDDDDDDDVPDLVEGQTFEAAAEEKQAS 161

[Close]

BLAST of CsGy1G007320 vs. TAIR 10
Match: AT1G73230.1 (Nascent polypeptide-associated complex NAC )

HSP 1 Score: 246.9 bits (629), Expect = 1.1e-65
Identity = 131/160 (81.88%), Postives = 140/160 (87.50%), Query Frame = 0


Query: 1   MDHTKLQKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 60
           M+  KL KMA  VRTGGKG+VRRKKKAVHKTTTTDDKRLQSTLKR+GVN+IPAIEEVNIF
Sbjct: 1   MNREKLMKMANTVRTGGKGTVRRKKKAVHKTTTTDDKRLQSTLKRVGVNSIPAIEEVNIF 60

Query: 61  KDDVVIQFTNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ 120
           KDDVVIQF NPKVQASIAANTWVVSG+PQTKKLQDILP II+QLGPDNLDNL+KLAEQFQ
Sbjct: 61  KDDVVIQFINPKVQASIAANTWVVSGTPQTKKLQDILPQIISQLGPDNLDNLKKLAEQFQ 120

Query: 121 KQAPGVGAGAAAAAANGEDDDDDVPDLVEGQTFEAAAEEK 161
           KQAP  GAG   A    EDDDDDVPDLV G+TFE  A E+
Sbjct: 121 KQAP--GAGDVPATIQEEDDDDDVPDLVVGETFETPATEE 158

[Close]

BLAST of CsGy1G007320 vs. TAIR 10
Match: AT1G17880.1 (basic transcription factor 3 )

HSP 1 Score: 243.0 bits (619), Expect = 1.6e-64
Identity = 132/160 (82.50%), Postives = 142/160 (88.75%), Query Frame = 0


Query: 1   MDHTKLQKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIF 60
           M+  KL KMA  VRTGGKG+VRRKKKAVHKT TTDDKRLQSTLKRIGVN+IPAIEEVNIF
Sbjct: 1   MNREKLMKMANTVRTGGKGTVRRKKKAVHKTNTTDDKRLQSTLKRIGVNSIPAIEEVNIF 60

Query: 61  KDDVVIQFTNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ 120
           KDDVVIQF NPKVQASIAANTWVVSGSPQTKKLQDILP II+QLGPDN+DNL+KLAEQFQ
Sbjct: 61  KDDVVIQFINPKVQASIAANTWVVSGSPQTKKLQDILPQIISQLGPDNMDNLKKLAEQFQ 120

Query: 121 KQAPGVGAGAAAAAANGEDDDDDVPDLVEGQTFEAAAEEK 161
           KQA   G G AA+A   E+DDDDVP+LV G+TFE AAEEK
Sbjct: 121 KQAS--GEGNAASATIQEEDDDDVPELV-GETFETAAEEK 157

The following BLAST results are available for this feature:

BLAST of CsGy1G007320 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9CAT7	1.6e-64	81.88	Nascent polypeptide-associated complex subunit beta OS=Arabidopsis thaliana OX=3...	[more]
Q9SMW7	2.3e-63	82.50	Basic transcription factor 3 OS=Arabidopsis thaliana OX=3702 GN=BTF3 PE=1 SV=1	[more]
Q6PC91	8.2e-37	54.04	Transcription factor BTF3 homolog 4 OS=Danio rerio OX=7955 GN=btf3l4 PE=2 SV=1	[more]
P20290	8.2e-37	53.42	Transcription factor BTF3 OS=Homo sapiens OX=9606 GN=BTF3 PE=1 SV=1	[more]
Q64152	8.2e-37	53.42	Transcription factor BTF3 OS=Mus musculus OX=10090 GN=Btf3 PE=1 SV=3	[more]

BLAST of CsGy1G007320 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004137521.1	1.36e-106	100.00	nascent polypeptide-associated complex subunit beta [Cucumis sativus] >XP_031743...	[more]
XP_008467234.1	5.68e-104	98.18	PREDICTED: nascent polypeptide-associated complex subunit beta-like isoform X2 [...	[more]
XP_016900101.1	6.30e-104	98.18	PREDICTED: nascent polypeptide-associated complex subunit beta-like isoform X1 [...	[more]
XP_038895154.1	2.00e-101	96.93	nascent polypeptide-associated complex subunit beta-like [Benincasa hispida]	[more]
XP_022954733.1	3.74e-99	95.09	nascent polypeptide-associated complex subunit beta-like [Cucurbita moschata] >X...	[more]

BLAST of CsGy1G007320 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LTU8	9.14e-106	100.00	Nascent polypeptide-associated complex subunit beta OS=Cucumis sativus OX=3659 G...	[more]
A0A1S3CT31	2.75e-104	98.18	Nascent polypeptide-associated complex subunit beta OS=Cucumis melo OX=3656 GN=L...	[more]
A0A1S4DVT8	3.05e-104	98.18	Nascent polypeptide-associated complex subunit beta OS=Cucumis melo OX=3656 GN=L...	[more]
A0A6J1K4A7	1.81e-99	95.09	Nascent polypeptide-associated complex subunit beta OS=Cucurbita maxima OX=3661 ...	[more]
A0A6J1GRY3	1.81e-99	95.09	Nascent polypeptide-associated complex subunit beta OS=Cucurbita moschata OX=366...	[more]

BLAST of CsGy1G007320 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G73230.1	1.1e-65	81.88	Nascent polypeptide-associated complex NAC	[more]
AT1G17880.1	1.6e-64	82.50	basic transcription factor 3	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002715	Nascent polypeptide-associated complex NAC domain	SMART	SM01407	NAC_2	coord: 36..91 e-value: 3.9E-22 score: 89.6
IPR002715	Nascent polypeptide-associated complex NAC domain	PFAM	PF01849	NAC	coord: 36..91 e-value: 8.2E-20 score: 70.6
IPR002715	Nascent polypeptide-associated complex NAC domain	PROSITE	PS51151	NAC_AB	coord: 33..97 score: 16.096802
IPR038187	NAC A/B domain superfamily	GENE3D	2.20.70.30		coord: 48..104 e-value: 5.2E-26 score: 92.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..35
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 126..163
None	No IPR available	PANTHER	PTHR10351:SF60	NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX SUBUNIT BETA	coord: 1..163
IPR039370	Transcription factor BTF3	PANTHER	PTHR10351	TRANSCRIPTION FACTOR BTF3 FAMILY MEMBER	coord: 1..163

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy1G007320.2	CsGy1G007320.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005829	cytosol
cellular_component	GO:0005854	nascent polypeptide-associated complex
cellular_component	GO:0042788	polysomal ribosome