CsGy1G006360 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy1G006360
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like
Location	Gy14Chr1: 4143025 .. 4146424 (+)
RNA-Seq Expression	CsGy1G006360
Synteny	CsGy1G006360

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTCAGTCGAAGCTCCTTTTACATTTTCTCTGTGAACCACTGAACCTTGCTCTTGCTGTACCAAATCACTCTTCATCCTTCAAACAGTTCTTCAAGCACGCTGAGAGAAGAGGGCGACAGAGGCCATGGAAGCTGCAATTTGCGGTCGAGTACCTCTTTCACCCAACCAATTCTTCACTTCAACCAAGCCAGGTATTCAAATTCTTTCCTATTTCCTCCTCTTAACTCTTAATTTGTCTCTACTTCTTTTGGGTGTGTATGCTATGTTCTTAATCCAAATTCAGATGAAGGACTTTGAGAAATTTTGGTTTTGTTGATGAATCTTTGCATAATTCCTGGGTTTGTGGAGATTGAAGCTTTTGGCTCCTTAGAATGAGTATAATTAATATTATTTACCGGGAAAATCTGTGTGTAGAATATTATTTTCCTGTTTGTATGAATTTTGTTTTTGTCGTAGAGGAGAGAATAGAGTGTTGCATTATGAGGGGAGAACTACAAATGGGGCCTAATTGGTGTTTAGAAGAAGATCTGAAGCTTTTTGTTTGTTTGTGTCTGTATTTACGCTGCAGTAGTTTAAAGCTTTCGTGGTTGTTTAGTAAAATATTGTTTGTGGTGGGTGGAAGTATTGATATATTTAAATATATTGTAATTCAAACATGTCAGGAGGTGGTATTTTCAAATCCTGTAGTGTCATTTTTACCAGATAATGTGAAGCTGCGATAAAAGGAGCTCCTTATCTGTATTTAAGATTGTGAGGTTCCTTGGCATGTTTCCTCAAAATAATGCCACTTTTGGTTCTCCATTTTTTAACCAAATATTTGTTTGGGCTTTATGGGATATGTTAACATATTAGGTAATATGAAGTTTCGTCTTAAAACCAATAGGTAATGAGAGGTTAGAGGAGTAGCTCATCTATATTGTTAAGATTATGAGATGGTCGATCTTCTAATATGCTAGTTTCAATATCTGAGGTCTTTTAATTTCTCTGCTATGGGGATCATCGACACTTTTATCTCCAATGTTGCATTTTGAGAGATAAAACACTAAAAGGTAAATTATGATAAAGCTTTTCAATTGGAACTTTGAGTAGAAAGACTGCCGTCTTTAAAAAACTATTTACTTTTTGCATCAATATAAAGTTGGCAACAAAATTAATCATAAAAAATTATCAACATTTGAAGAAGGGTAACATTCTCCCATTTCGTTCACACCAAAGGTTAAAAAATCATCCCTGTTGACAGCAAGCTATAATGATATCTTCACACCATGGTAAGGATGACCCAAAAAAAATGGAGGCAAGAATGTCATATATGTTGCTAGACATAATCATTGACCAACCAAAAGCATCCAATATCAAGAGGCAAAAGAGAAACCTAGTAAAAAGATGGCATAGATGTTAAGGAAACACACCAAAAAGCAGAGTGACAAACGTGGAGCGTTCTCTTTTGAAGGTCATCAGTAGCTCCCACAAAAAGATTTAAATTTCCTTCAGATAAGCTTCCTTCCAAATCAACAAAAAAGTTTTTTCGGAGATGAGTCCTTAGCTTGGATAGAATCCTTTGTTAATAAACGTACATGAAAGCTTTAGAGGGATTAAGAGGTCAAATCCACGAATTGTTGAAATTCCTCTTACTCTTTGGCTTGTCCTGGGGGCAAAGAGTTGGGATGTTTGGTGATATTCACCGAAGTATTGCTTCAAGTCTGCAGGCAAAGAATTTAATATTAATCCAGCCCATGTTGCATCTAAGACCTAGAAAAGTAAAATACATTAAATGATTATTTAAATTCAATTGATTAAGACATATACTCTTGGCTTAGAGGTTAAAGGGTCAAAGGCTCGACCCTTCTCATTGTTGACTAGTTTGTGAATCATGCAAATGGATAACCATAAAAGAGGTTCATTGTTAGAACTAAATTTGCAAAGATCTTAGATCCTATTTATATACTCTTCAAAACACCTTTCAATTTGTAATTTGAGATAAATATCAATGGCCTATTCTAAACGTTAATATTCATAATTATGGTACGTAGTTTTACCTGCAAAATTGTGAAGGCTGTTCATTTTATTATTCATTGGAACTTGCATGACATCTTCATACAATTTTACCCATTTATAATTGCTATTTGTGTCATAGGGGATAAATACTATTTTCATAAACAATGTAGAAACCGGAGTGCCTTAATGATGATATCAGTTGCTGAGCTTGGAAAAGGCGGGGGGTTGTTGGAAAAACCAACAATAGAGAAGACAACTCCGGGCCGTGAATCTGAGTTTGATGTTAGGTACAAAACACTTTTCCTTTTAATGTTTGTCACGTATAAGCAACTAAAGATCTCTATGCATTAGAGAAGGTCTCAACTTCCAAAATTATTTTGATCTTCAGGAAATCAAGGAAAACTTCTCCACCTTATCGAGTGTTGCTACATAATGACAATTTCAACAAGCGGGAATACGTTGTTCAAGTTCTGATGAAGGTGATTCCTGGAATGACACTTGACAATGCAGTCAACATAATGCAGGAAGCGCATTACAATGGGATGGCAGTGGTAATTATCTGCGCTCAAGTAGACGCAGAAGATCACTGCATGCAGCTTAGAGGCAATGGCCTTCTCAGTTCAATCGAGCCTGCAAGCGATGGTTGTTGAATAAGAAACATAGATTGTGTAATGTACTCTTTTTCCTCCCTTAGTTATCAGCCATATTAAAATTGCATGTTCTCAACTGCTACATTGTTGCAAGTTGCGCCTATGTACATAAATAGAGATACTTCATAAACAAACAATCTTCAATTGATGAATATAATTATCACTCTAGTTATGATATGAGTTGTATACACAAACACATTTTCCTTTTACTAAATTTTTTCTTTACTCGACTTCCATGTGGCTTTTTGTGCTCTTATGGATGCAATTCATAGAGTGGGATCTTACTTTTACTTGGTAGGACTTAGTTTGAGTAAATATTTGCAAGTTCTTCCTTTGGTCCCACTCTCATGCATACATTGAGAAATTTTCTAAGAATGTTGTTCTCTCTGTTGCTTGATTTCTTGATATAGATTGAGACGTCTAGTGCTTTAACTCTATATTTACACATTTTCCAGTTCCAGTCTTGGGAAGTAGTTCAGAACAGCTGGAGTTTCCAGTTTGTAGAAATCACCTTTTCGTTAGAATACTTTTTGAACGAGTTTAGTGGATAAAGACAACAATTACCATCCTAACGATGGATAACAATTGGTGAACTGTTGTGGATGGTTAATTAAGCGGTTGCATTCTTCACCATTTTCTTGAAACTATAACAGTGCTTTCCATCTATTACAAAGCTTTTCAATACACCTGTGAATTTAATGAGATAAAACCATACGAATAGATCGATAAATTTATTTTCTAGAGTGGCGCAGGGC

mRNA sequence

CTCAGTCGAAGCTCCTTTTACATTTTCTCTGTGAACCACTGAACCTTGCTCTTGCTGTACCAAATCACTCTTCATCCTTCAAACAGTTCTTCAAGCACGCTGAGAGAAGAGGGCGACAGAGGCCATGGAAGCTGCAATTTGCGGTCGAGTACCTCTTTCACCCAACCAATTCTTCACTTCAACCAAGCCAGGTATTCAAATTCTTTCCTATTTCCTCCTCTTAACTCTTAATTTGTCTCTACTTCTTTTGGGTGTGTATGCTATGTTCTTAATCCAAATTCAGATGAAGGACTTTGAGAAATTTTGGTTTTGTTGATGAATCTTTGCATAATTCCTGGGTTTGTGGAGATTGAAGCTTTTGGCTCCTTAGAATGAGTATAATTAATATTATTTACCGGGAAAATCTGTGTGTAGAATATTATTTTCCTGTTTGTATGAATTTTGTTTTTGTCGTAGAGGAGAGAATAGAGTGTTGCATTATGAGGGGAGAACTACAAATGGGGCCTAATTGGTGTTTAGAAGAAGATCTGAAGCTTTTTGTTTGTTTGTGTCTGTATTTACGCTGCAGTAGTTTAAAGCTTTCGTGGTTGTTTAGTAAAATATTGTTTGTGGTGGGTGGAAGTATTGATATATTTAAATATATTGTAATTCAAACATGTCAGGAGGTGGTATTTTCAAATCCTGTAGTGTCATTTTTACCAGATAATGTGAAGCTGCGATAAAAGGAGCTCCTTATCTGTATTTAAGATTGTGAGGTTCCTTGGCATGTTTCCTCAAAATAATGCCACTTTTGGTTCTCCATTTTTTAACCAAATATTTGTTTGGGCTTTATGGGATATGTTAACATATTAGGTAATATGAAGTTTCGTCTTAAAACCAATAGGTAATGAGAGGTTAGAGGAGTAGCTCATCTATATTGTTAAGATTATGAGATGGTCGATCTTCTAATATGCTAGTTTCAATATCTGAGGTCTTTTAATTTCTCTGCTATGGGGATCATCGACACTTTTATCTCCAATGTTGCATTTTGAGAGATAAAACACTAAAAGGTAAATTATGATAAAGCTTTTCAATTGGAACTTTGAGTAGAAAGACTGCCGTCTTTAAAAAACTATTTACTTTTTGCATCAATATAAAGTTGGCAACAAAATTAATCATAAAAAATTATCAACATTTGAAGAAGGGTAACATTCTCCCATTTCGTTCACACCAAAGGTTAAAAAATCATCCCTGTTGACAGCAAGCTATAATGATATCTTCACACCATGGTAAGGATGACCCAAAAAAAATGGAGGCAAGAATGTCATATATGTTGCTAGACATAATCATTGACCAACCAAAAGCATCCAATATCAAGAGGCAAAAGAGAAACCTAGTAAAAAGATGGCATAGATGTTAAGGAAACACACCAAAAAGCAGAGTGACAAACGTGGAGCGTTCTCTTTTGAAGGTCATCAGTAGCTCCCACAAAAAGATTTAAATTTCCTTCAGATAAGCTTCCTTCCAAATCAACAAAAAAGTTTTTTCGGAGATGAGTCCTTAGCTTGGATAGAATCCTTTGTTAATAAACGTACATGAAAGCTTTAGAGGGATTAAGAGGTCAAATCCACGAATTGTTGAAATTCCTCTTACTCTTTGGCTTGTCCTGGGGGCAAAGAGTTGGGATGTTTGGTGATATTCACCGAAGTATTGCTTCAAGTCTGCAGGCAAAGAATTTAATATTAATCCAGCCCATGTTGCATCTAAGACCTAGAAAAGTAAAATACATTAAATGATTATTTAAATTCAATTGATTAAGACATATACTCTTGGCTTAGAGGTTAAAGGGTCAAAGGCTCGACCCTTCTCATTGTTGACTAGTTTGTGAATCATGCAAATGGATAACCATAAAAGAGGTTCATTGTTAGAACTAAATTTGCAAAGATCTTAGATCCTATTTATATACTCTTCAAAACACCTTTCAATTTGTAATTTGAGATAAATATCAATGGCCTATTCTAAACGTTAATATTCATAATTATGGTACGTAGTTTTACCTGCAAAATTGTGAAGGCTGTTCATTTTATTATTCATTGGAACTTGCATGACATCTTCATACAATTTTACCCATTTATAATTGCTATTTGTGTCATAGGGGATAAATACTATTTTCATAAACAATGTAGAAACCGGAGTGCCTTAATGATGATATCAGTTGCTGAGCTTGGAAAAGGCGGGGGGTTGTTGGAAAAACCAACAATAGAGAAGACAACTCCGGGCCGTGAATCTGAGTTTGATGTTAGGAAATCAAGGAAAACTTCTCCACCTTATCGAGTGTTGCTACATAATGACAATTTCAACAAGCGGGAATACGTTGTTCAAGTTCTGATGAAGGTGATTCCTGGAATGACACTTGACAATGCAGTCAACATAATGCAGGAAGCGCATTACAATGGGATGGCAGTGGTAATTATCTGCGCTCAAGTAGACGCAGAAGATCACTGCATGCAGCTTAGAGGCAATGGCCTTCTCAGTTCAATCGAGCCTGCAAGCGATGGTTGTTGAATAAGAAACATAGATTGTGTAATGTACTCTTTTTCCTCCCTTAGTTATCAGCCATATTAAAATTGCATGTTCTCAACTGCTACATTGTTGCAAGTTGCGCCTATGTACATAAATAGAGATACTTCATAAACAAACAATCTTCAATTGATGAATATAATTATCACTCTAGTTATGATATGAGTTGTATACACAAACACATTTTCCTTTTACTAAATTTTTTCTTTACTCGACTTCCATGTGGCTTTTTGTGCTCTTATGGATGCAATTCATAGAGTGGGATCTTACTTTTACTTGGTAGGACTTAGTTTGAGTAAATATTTGCAAGTTCTTCCTTTGGTCCCACTCTCATGCATACATTGAGAAATTTTCTAAGAATGTTGTTCTCTCTGTTGCTTGATTTCTTGATATAGATTGAGACGTCTAGTGCTTTAACTCTATATTTACACATTTTCCAGTTCCAGTCTTGGGAAGTAGTTCAGAACAGCTGGAGTTTCCAGTTTGTAGAAATCACCTTTTCGTTAGAATACTTTTTGAACGAGTTTAGTGGATAAAGACAACAATTACCATCCTAACGATGGATAACAATTGGTGAACTGTTGTGGATGGTTAATTAAGCGGTTGCATTCTTCACCATTTTCTTGAAACTATAACAGTGCTTTCCATCTATTACAAAGCTTTTCAATACACCTGTGAATTTAATGAGATAAAACCATACGAATAGATCGATAAATTTATTTTCTAGAGTGGCGCAGGGC

Coding sequence (CDS)

ATGGTACGTAGTTTTACCTGCAAAATTGTGAAGGCTGTTCATTTTATTATTCATTGGAACTTGCATGACATCTTCATACAATTTTACCCATTTATAATTGCTATTTGTGTCATAGGGGATAAATACTATTTTCATAAACAATGTAGAAACCGGAGTGCCTTAATGATGATATCAGTTGCTGAGCTTGGAAAAGGCGGGGGGTTGTTGGAAAAACCAACAATAGAGAAGACAACTCCGGGCCGTGAATCTGAGTTTGATGTTAGGAAATCAAGGAAAACTTCTCCACCTTATCGAGTGTTGCTACATAATGACAATTTCAACAAGCGGGAATACGTTGTTCAAGTTCTGATGAAGGTGATTCCTGGAATGACACTTGACAATGCAGTCAACATAATGCAGGAAGCGCATTACAATGGGATGGCAGTGGTAATTATCTGCGCTCAAGTAGACGCAGAAGATCACTGCATGCAGCTTAGAGGCAATGGCCTTCTCAGTTCAATCGAGCCTGCAAGCGATGGTTGTTGA

Protein sequence

MVRSFTCKIVKAVHFIIHWNLHDIFIQFYPFIIAICVIGDKYYFHKQCRNRSALMMISVAELGKGGGLLEKPTIEKTTPGRESEFDVRKSRKTSPPYRVLLHNDNFNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGMAVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC*

Homology

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BLAST of CsGy1G006360 vs. ExPASy Swiss-Prot
Match: Q9SX29 (ATP-dependent Clp protease adapter protein CLPS1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CPLS1 PE=1 SV=1)

HSP 1 Score: 218.0 bits (554), Expect = 8.4e-56
Identity = 107/138 (77.54%), Postives = 119/138 (86.23%), Query Frame = 0


Query: 39  GDKYYFHK-QCRNRSALMMISV-AELGKGGGLLEKPTIEKTTPGRESEFDVRKSRKTSPP 98
           GDK+   K  C NRS LM +S  A LGKGGG+L+KP IEKTTPGRESEFD+RKS+K +PP
Sbjct: 22  GDKHLVSKGPCVNRSILMTLSTSAALGKGGGVLDKPIIEKTTPGRESEFDLRKSKKIAPP 81

Query: 99  YRVLLHNDNFNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGMAVVIICAQVDAEDHCM 158
           YRV+LHNDNFNKREYVVQVLMKVIPGMT+DNAVNIMQEAH NG+AVVI+CAQ DAE HCM
Sbjct: 82  YRVILHNDNFNKREYVVQVLMKVIPGMTVDNAVNIMQEAHINGLAVVIVCAQADAEQHCM 141

Query: 159 QLRGNGLLSSIEPASDGC 175
           QLRGNGLLSS+EP   GC
Sbjct: 142 QLRGNGLLSSVEPDGGGC 159

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BLAST of CsGy1G006360 vs. ExPASy Swiss-Prot
Match: A0A2K3CNL6 (ATP-dependent Clp protease adapter protein CLPS1, chloroplastic OS=Chlamydomonas reinhardtii OX=3055 GN=CLPS1 PE=3 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 2.7e-22
Identity = 57/109 (52.29%), Postives = 78/109 (71.56%), Query Frame = 0


Query: 66  GGLLEKPTIEKTTPGRESEFDVRKSRKTSPPYRVLLHNDNFNKREYVVQVLMKVIPGMTL 125
           GG+++ PT   TT  ++    V +S+K  P Y+VLLHNDN+NKREYVV+VL+KV+  +T+
Sbjct: 61  GGVMDAPT---TT--QQPASGVERSQKRPPIYKVLLHNDNYNKREYVVKVLLKVVEQITV 120

Query: 126 DNAVNIMQEAHYNGMAVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC 175
           D+AV  MQEAH  G+A+V+ C Q +AE +C  LR NGL S+IEP   GC
Sbjct: 121 DDAVTCMQEAHETGVALVVACPQDNAERYCEGLRLNGLTSTIEPG--GC 162

[Close]

BLAST of CsGy1G006360 vs. ExPASy Swiss-Prot
Match: Q31QE7 (ATP-dependent Clp protease adapter protein ClpS OS=Synechococcus elongatus (strain PCC 7942 / FACHB-805) OX=1140 GN=clpS PE=3 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 3.1e-18
Identity = 46/79 (58.23%), Postives = 56/79 (70.89%), Query Frame = 0


Query: 91  RKTSPPYRVLLHNDNFNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGMAVVIICAQVD 150
           RK +P YRVLLHND+FN  EYVV VLM+ +P +T   AV+IM EAH NG  +VI C    
Sbjct: 15  RKIAPRYRVLLHNDDFNPMEYVVMVLMQTVPSLTQPQAVDIMMEAHTNGTGLVITCDIEP 74

Query: 151 AEDHCMQLRGNGLLSSIEP 170
           AE +C QL+ +GL SSIEP
Sbjct: 75  AEFYCEQLKSHGLSSSIEP 93

[Close]

BLAST of CsGy1G006360 vs. ExPASy Swiss-Prot
Match: Q5N3U1 (ATP-dependent Clp protease adapter protein ClpS OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) OX=269084 GN=clpS PE=3 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 1.5e-15
Identity = 41/73 (56.16%), Postives = 51/73 (69.86%), Query Frame = 0


Query: 91  RKTSPPYRVLLHNDNFNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGMAVVIICAQVD 150
           RK +P YRVLLHND+FN  EYVV VLM+ +P +T   AV+IM EAH NG  +VI C    
Sbjct: 15  RKIAPRYRVLLHNDDFNPMEYVVMVLMQTVPSLTQPQAVDIMMEAHTNGTGLVITCDIEP 74

Query: 151 AEDHCMQLRGNGL 164
           AE +C QL+ +GL
Sbjct: 75  AEFYCEQLKSHGL 87

[Close]

BLAST of CsGy1G006360 vs. ExPASy Swiss-Prot
Match: Q3AUR5 (ATP-dependent Clp protease adapter protein ClpS OS=Synechococcus sp. (strain CC9902) OX=316279 GN=clpS PE=3 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 8.0e-14
Identity = 44/102 (43.14%), Postives = 61/102 (59.80%), Query Frame = 0


Query: 70  EKPTIEKTTPGRESEFD--VRKSRKTSPPYRVLLHNDNFNKREYVVQVLMKVIPGMTLDN 129
           E PT    +PG  +  D    + RK SP Y+VLLHND  N  EYV+  L +V+P ++  +
Sbjct: 4   ETPT---RSPGGAAVLDKAPERVRKRSPRYKVLLHNDPVNSMEYVMTTLRQVVPQLSEQD 63

Query: 130 AVNIMQEAHYNGMAVVIICAQVDAEDHCMQLRGNGLLSSIEP 170
           A+ +M EAH  G+ +VI+C    AE +C  L+  GL SSIEP
Sbjct: 64  AMAVMLEAHNTGVGLVIVCDIEPAEFYCETLKSKGLTSSIEP 102

[Close]

BLAST of CsGy1G006360 vs. NCBI nr
Match: XP_008456997.1 (PREDICTED: ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like [Cucumis melo])

HSP 1 Score: 280 bits (716), Expect = 3.97e-94
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 0


Query: 39  GDKYYFHKQCRNRSALMMISVAELGKGGGLLEKPTIEKTTPGRESEFDVRKSRKTSPPYR 98
           GDKYYFHKQCRNRSALMMISVAELGKGGGLLEKPTIEKTTPGRESEFDVRKSRKTSPPYR
Sbjct: 23  GDKYYFHKQCRNRSALMMISVAELGKGGGLLEKPTIEKTTPGRESEFDVRKSRKTSPPYR 82

Query: 99  VLLHNDNFNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGMAVVIICAQVDAEDHCMQL 158
           VLLHNDNFNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGMAVVIICAQVDAEDHCMQL
Sbjct: 83  VLLHNDNFNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGMAVVIICAQVDAEDHCMQL 142

Query: 159 RGNGLLSSIEPASDGC 174
           RGNGLLSSIEPASDGC
Sbjct: 143 RGNGLLSSIEPASDGC 158

[Close]

BLAST of CsGy1G006360 vs. NCBI nr
Match: XP_004137466.1 (ATP-dependent Clp protease adapter protein CLPS1, chloroplastic [Cucumis sativus] >KGN64109.1 hypothetical protein Csa_014084 [Cucumis sativus])

HSP 1 Score: 278 bits (711), Expect = 2.30e-93
Identity = 135/136 (99.26%), Postives = 135/136 (99.26%), Query Frame = 0


Query: 39  GDKYYFHKQCRNRSALMMISVAELGKGGGLLEKPTIEKTTPGRESEFDVRKSRKTSPPYR 98
           GDKYYFHKQCRNRSALMMISVAELGKGGGLLEKP IEKTTPGRESEFDVRKSRKTSPPYR
Sbjct: 23  GDKYYFHKQCRNRSALMMISVAELGKGGGLLEKPAIEKTTPGRESEFDVRKSRKTSPPYR 82

Query: 99  VLLHNDNFNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGMAVVIICAQVDAEDHCMQL 158
           VLLHNDNFNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGMAVVIICAQVDAEDHCMQL
Sbjct: 83  VLLHNDNFNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGMAVVIICAQVDAEDHCMQL 142

Query: 159 RGNGLLSSIEPASDGC 174
           RGNGLLSSIEPASDGC
Sbjct: 143 RGNGLLSSIEPASDGC 158

[Close]

BLAST of CsGy1G006360 vs. NCBI nr
Match: XP_022136971.1 (ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like isoform X1 [Momordica charantia])

HSP 1 Score: 274 bits (701), Expect = 7.67e-92
Identity = 131/136 (96.32%), Postives = 135/136 (99.26%), Query Frame = 0


Query: 39  GDKYYFHKQCRNRSALMMISVAELGKGGGLLEKPTIEKTTPGRESEFDVRKSRKTSPPYR 98
           GDKYYFHKQCRNRS LMM+SVAELGKGGGLLEKPTIEKTTPGRESEFDVRKSRKT+PPYR
Sbjct: 23  GDKYYFHKQCRNRSTLMMLSVAELGKGGGLLEKPTIEKTTPGRESEFDVRKSRKTAPPYR 82

Query: 99  VLLHNDNFNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGMAVVIICAQVDAEDHCMQL 158
           VLLHNDN+NKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGM+VVIICAQVDAEDHCMQL
Sbjct: 83  VLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGMSVVIICAQVDAEDHCMQL 142

Query: 159 RGNGLLSSIEPASDGC 174
           RGNGLLSSIEPASDGC
Sbjct: 143 RGNGLLSSIEPASDGC 158

[Close]

BLAST of CsGy1G006360 vs. NCBI nr
Match: XP_038894047.1 (ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like [Benincasa hispida] >XP_038894048.1 ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 274 bits (701), Expect = 7.67e-92
Identity = 132/136 (97.06%), Postives = 134/136 (98.53%), Query Frame = 0


Query: 39  GDKYYFHKQCRNRSALMMISVAELGKGGGLLEKPTIEKTTPGRESEFDVRKSRKTSPPYR 98
           GDKYYFHKQCRNRS LMM+SVAELGKGGGLLEKPTIEKTTPGRESEFDVRK RKTSPPYR
Sbjct: 23  GDKYYFHKQCRNRSVLMMLSVAELGKGGGLLEKPTIEKTTPGRESEFDVRKLRKTSPPYR 82

Query: 99  VLLHNDNFNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGMAVVIICAQVDAEDHCMQL 158
           VLLHNDN+NKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGMAVVIICAQVDAEDHCMQL
Sbjct: 83  VLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGMAVVIICAQVDAEDHCMQL 142

Query: 159 RGNGLLSSIEPASDGC 174
           RGNGLLSSIEPASDGC
Sbjct: 143 RGNGLLSSIEPASDGC 158

[Close]

BLAST of CsGy1G006360 vs. NCBI nr
Match: XP_022994956.1 (ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 264 bits (674), Expect = 9.98e-88
Identity = 127/136 (93.38%), Postives = 131/136 (96.32%), Query Frame = 0


Query: 39  GDKYYFHKQCRNRSALMMISVAELGKGGGLLEKPTIEKTTPGRESEFDVRKSRKTSPPYR 98
           GDKYYFHKQCRNRS L M+SVAELGKGGGLLEKPT EKTTPGRESEF+VRKSRK +PPYR
Sbjct: 23  GDKYYFHKQCRNRSILTMLSVAELGKGGGLLEKPTTEKTTPGRESEFNVRKSRKIAPPYR 82

Query: 99  VLLHNDNFNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGMAVVIICAQVDAEDHCMQL 158
           VLLHNDN NKREYVVQVLMKVIPGMT+DNAVNIMQEAHYNGMAVVIICAQVDAEDHCMQL
Sbjct: 83  VLLHNDNHNKREYVVQVLMKVIPGMTVDNAVNIMQEAHYNGMAVVIICAQVDAEDHCMQL 142

Query: 159 RGNGLLSSIEPASDGC 174
           RGNGLLSSIEPASDGC
Sbjct: 143 RGNGLLSSIEPASDGC 158

[Close]

BLAST of CsGy1G006360 vs. ExPASy TrEMBL
Match: A0A1S3C561 (ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC103496767 PE=3 SV=1)

HSP 1 Score: 280 bits (716), Expect = 1.92e-94
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 0


Query: 39  GDKYYFHKQCRNRSALMMISVAELGKGGGLLEKPTIEKTTPGRESEFDVRKSRKTSPPYR 98
           GDKYYFHKQCRNRSALMMISVAELGKGGGLLEKPTIEKTTPGRESEFDVRKSRKTSPPYR
Sbjct: 23  GDKYYFHKQCRNRSALMMISVAELGKGGGLLEKPTIEKTTPGRESEFDVRKSRKTSPPYR 82

Query: 99  VLLHNDNFNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGMAVVIICAQVDAEDHCMQL 158
           VLLHNDNFNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGMAVVIICAQVDAEDHCMQL
Sbjct: 83  VLLHNDNFNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGMAVVIICAQVDAEDHCMQL 142

Query: 159 RGNGLLSSIEPASDGC 174
           RGNGLLSSIEPASDGC
Sbjct: 143 RGNGLLSSIEPASDGC 158

[Close]

BLAST of CsGy1G006360 vs. ExPASy TrEMBL
Match: A0A0A0LSY6 (ClpS domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G042210 PE=3 SV=1)

HSP 1 Score: 278 bits (711), Expect = 1.11e-93
Identity = 135/136 (99.26%), Postives = 135/136 (99.26%), Query Frame = 0


Query: 39  GDKYYFHKQCRNRSALMMISVAELGKGGGLLEKPTIEKTTPGRESEFDVRKSRKTSPPYR 98
           GDKYYFHKQCRNRSALMMISVAELGKGGGLLEKP IEKTTPGRESEFDVRKSRKTSPPYR
Sbjct: 23  GDKYYFHKQCRNRSALMMISVAELGKGGGLLEKPAIEKTTPGRESEFDVRKSRKTSPPYR 82

Query: 99  VLLHNDNFNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGMAVVIICAQVDAEDHCMQL 158
           VLLHNDNFNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGMAVVIICAQVDAEDHCMQL
Sbjct: 83  VLLHNDNFNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGMAVVIICAQVDAEDHCMQL 142

Query: 159 RGNGLLSSIEPASDGC 174
           RGNGLLSSIEPASDGC
Sbjct: 143 RGNGLLSSIEPASDGC 158

[Close]

BLAST of CsGy1G006360 vs. ExPASy TrEMBL
Match: A0A6J1C511 (ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111008549 PE=3 SV=1)

HSP 1 Score: 274 bits (701), Expect = 3.71e-92
Identity = 131/136 (96.32%), Postives = 135/136 (99.26%), Query Frame = 0


Query: 39  GDKYYFHKQCRNRSALMMISVAELGKGGGLLEKPTIEKTTPGRESEFDVRKSRKTSPPYR 98
           GDKYYFHKQCRNRS LMM+SVAELGKGGGLLEKPTIEKTTPGRESEFDVRKSRKT+PPYR
Sbjct: 23  GDKYYFHKQCRNRSTLMMLSVAELGKGGGLLEKPTIEKTTPGRESEFDVRKSRKTAPPYR 82

Query: 99  VLLHNDNFNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGMAVVIICAQVDAEDHCMQL 158
           VLLHNDN+NKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGM+VVIICAQVDAEDHCMQL
Sbjct: 83  VLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGMSVVIICAQVDAEDHCMQL 142

Query: 159 RGNGLLSSIEPASDGC 174
           RGNGLLSSIEPASDGC
Sbjct: 143 RGNGLLSSIEPASDGC 158

[Close]

BLAST of CsGy1G006360 vs. ExPASy TrEMBL
Match: A0A6J1K0P0 (ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111490541 PE=4 SV=1)

HSP 1 Score: 264 bits (674), Expect = 4.83e-88
Identity = 127/136 (93.38%), Postives = 131/136 (96.32%), Query Frame = 0


Query: 39  GDKYYFHKQCRNRSALMMISVAELGKGGGLLEKPTIEKTTPGRESEFDVRKSRKTSPPYR 98
           GDKYYFHKQCRNRS L M+SVAELGKGGGLLEKPT EKTTPGRESEF+VRKSRK +PPYR
Sbjct: 23  GDKYYFHKQCRNRSILTMLSVAELGKGGGLLEKPTTEKTTPGRESEFNVRKSRKIAPPYR 82

Query: 99  VLLHNDNFNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGMAVVIICAQVDAEDHCMQL 158
           VLLHNDN NKREYVVQVLMKVIPGMT+DNAVNIMQEAHYNGMAVVIICAQVDAEDHCMQL
Sbjct: 83  VLLHNDNHNKREYVVQVLMKVIPGMTVDNAVNIMQEAHYNGMAVVIICAQVDAEDHCMQL 142

Query: 159 RGNGLLSSIEPASDGC 174
           RGNGLLSSIEPASDGC
Sbjct: 143 RGNGLLSSIEPASDGC 158

[Close]

BLAST of CsGy1G006360 vs. ExPASy TrEMBL
Match: A0A6J1GS56 (ATP-dependent Clp protease adapter protein CLPS1, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111457001 PE=4 SV=1)

HSP 1 Score: 262 bits (669), Expect = 2.79e-87
Identity = 126/136 (92.65%), Postives = 130/136 (95.59%), Query Frame = 0


Query: 39  GDKYYFHKQCRNRSALMMISVAELGKGGGLLEKPTIEKTTPGRESEFDVRKSRKTSPPYR 98
           GDKYYFHKQCRNRS L M+SVAELGKGGGLLEKP  EKTTPGRESEF+VRKSRK +PPYR
Sbjct: 23  GDKYYFHKQCRNRSILTMLSVAELGKGGGLLEKPATEKTTPGRESEFNVRKSRKIAPPYR 82

Query: 99  VLLHNDNFNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGMAVVIICAQVDAEDHCMQL 158
           VLLHNDN NKREYVVQVLMKVIPGMT+DNAVNIMQEAHYNGMAVVIICAQVDAEDHCMQL
Sbjct: 83  VLLHNDNHNKREYVVQVLMKVIPGMTVDNAVNIMQEAHYNGMAVVIICAQVDAEDHCMQL 142

Query: 159 RGNGLLSSIEPASDGC 174
           RGNGLLSSIEPASDGC
Sbjct: 143 RGNGLLSSIEPASDGC 158

[Close]

BLAST of CsGy1G006360 vs. TAIR 10
Match: AT1G68660.1 (Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein )

HSP 1 Score: 218.0 bits (554), Expect = 6.0e-57
Identity = 107/138 (77.54%), Postives = 119/138 (86.23%), Query Frame = 0


Query: 39  GDKYYFHK-QCRNRSALMMISV-AELGKGGGLLEKPTIEKTTPGRESEFDVRKSRKTSPP 98
           GDK+   K  C NRS LM +S  A LGKGGG+L+KP IEKTTPGRESEFD+RKS+K +PP
Sbjct: 22  GDKHLVSKGPCVNRSILMTLSTSAALGKGGGVLDKPIIEKTTPGRESEFDLRKSKKIAPP 81

Query: 99  YRVLLHNDNFNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGMAVVIICAQVDAEDHCM 158
           YRV+LHNDNFNKREYVVQVLMKVIPGMT+DNAVNIMQEAH NG+AVVI+CAQ DAE HCM
Sbjct: 82  YRVILHNDNFNKREYVVQVLMKVIPGMTVDNAVNIMQEAHINGLAVVIVCAQADAEQHCM 141

Query: 159 QLRGNGLLSSIEPASDGC 175
           QLRGNGLLSS+EP   GC
Sbjct: 142 QLRGNGLLSSVEPDGGGC 159

[Close]

BLAST of CsGy1G006360 vs. TAIR 10
Match: AT1G68660.2 (Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein )

HSP 1 Score: 149.1 bits (375), Expect = 3.4e-36
Identity = 81/138 (58.70%), Postives = 90/138 (65.22%), Query Frame = 0


Query: 39  GDKYYFHK-QCRNRSALMMISV-AELGKGGGLLEKPTIEKTTPGRESEFDVRKSRKTSPP 98
           GDK+   K  C NRS LM +S  A LGKGGG+L+KP IEKTTPGRESEFD+RKS+K +PP
Sbjct: 22  GDKHLVSKGPCVNRSILMTLSTSAALGKGGGVLDKPIIEKTTPGRESEFDLRKSKKIAPP 81

Query: 99  YRVLLHNDNFNKREYVVQVLMKVIPGMTLDNAVNIMQEAHYNGMAVVIICAQVDAEDHCM 158
           YRV+LHNDNFNKREYVVQVLMK                               DAE HCM
Sbjct: 82  YRVILHNDNFNKREYVVQVLMK------------------------------ADAEQHCM 129

Query: 159 QLRGNGLLSSIEPASDGC 175
           QLRGNGLLSS+EP   GC
Sbjct: 142 QLRGNGLLSSVEPDGGGC 129

The following BLAST results are available for this feature:

BLAST of CsGy1G006360 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SX29	8.4e-56	77.54	ATP-dependent Clp protease adapter protein CLPS1, chloroplastic OS=Arabidopsis t...	[more]
A0A2K3CNL6	2.7e-22	52.29	ATP-dependent Clp protease adapter protein CLPS1, chloroplastic OS=Chlamydomonas...	[more]
Q31QE7	3.1e-18	58.23	ATP-dependent Clp protease adapter protein ClpS OS=Synechococcus elongatus (stra...	[more]
Q5N3U1	1.5e-15	56.16	ATP-dependent Clp protease adapter protein ClpS OS=Synechococcus sp. (strain ATC...	[more]
Q3AUR5	8.0e-14	43.14	ATP-dependent Clp protease adapter protein ClpS OS=Synechococcus sp. (strain CC9...	[more]

BLAST of CsGy1G006360 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008456997.1	3.97e-94	100.00	PREDICTED: ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like ...	[more]
XP_004137466.1	2.30e-93	99.26	ATP-dependent Clp protease adapter protein CLPS1, chloroplastic [Cucumis sativus...	[more]
XP_022136971.1	7.67e-92	96.32	ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like isoform X1 ...	[more]
XP_038894047.1	7.67e-92	97.06	ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like [Benincasa ...	[more]
XP_022994956.1	9.98e-88	93.38	ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like [Cucurbita ...	[more]

BLAST of CsGy1G006360 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3C561	1.92e-94	100.00	ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like OS=Cucumis ...	[more]
A0A0A0LSY6	1.11e-93	99.26	ClpS domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G042210 PE=3 S...	[more]
A0A6J1C511	3.71e-92	96.32	ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like isoform X1 ...	[more]
A0A6J1K0P0	4.83e-88	93.38	ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like OS=Cucurbit...	[more]
A0A6J1GS56	2.79e-87	92.65	ATP-dependent Clp protease adapter protein CLPS1, chloroplastic OS=Cucurbita mos...	[more]

BLAST of CsGy1G006360 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G68660.1	6.0e-57	77.54	Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family pr...	[more]
AT1G68660.2	3.4e-36	58.70	Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family pr...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR014719	Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like	GENE3D	3.30.1390.10		coord: 91..169 e-value: 5.0E-21 score: 76.3
IPR014719	Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like	SUPERFAMILY	54736	ClpS-like	coord: 91..168
IPR003769	Adaptor protein ClpS, core	PFAM	PF02617	ClpS	coord: 93..160 e-value: 2.1E-18 score: 65.8
IPR022935	ATP-dependent Clp protease adaptor protein ClpS	PANTHER	PTHR33473	ATP-DEPENDENT CLP PROTEASE ADAPTER PROTEIN CLPS1, CHLOROPLASTIC	coord: 35..174
IPR022935	ATP-dependent Clp protease adaptor protein ClpS	HAMAP	MF_00302	ClpS	coord: 77..171 score: 14.976843
None	No IPR available	PANTHER	PTHR33473:SF14	ATP-DEPENDENT CLP PROTEASE ADAPTOR PROTEIN CLPS	coord: 35..174

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy1G006360.2	CsGy1G006360.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030163	protein catabolic process
biological_process	GO:0006508	proteolysis
molecular_function	GO:0004252	serine-type endopeptidase activity