CsGy1G006170 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy1G006170
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	Cyclin_C domain-containing protein
Location	Gy14Chr1: 3997850 .. 3998315 (+)
RNA-Seq Expression	CsGy1G006170
Synteny	CsGy1G006170

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGCATGCTTTGATTGTGGGGGCCGTCTGGTTTAGACAGGCCTACGGTGGAGTGAGGCGGAGCTTTGAAGTGGCGGCAGAGATGGTGGAGGAGTGGAAAGACATGATTATAGGATTCTGTGTGTCATCAGCTATTGGAATAGCAACAGTGTCTGTTCATATCAAAACCGAGCTTCCAAATTCATTTCAGCTTCTATCCATTGCTGTTTTGCTGTGTTTTGTGTCTGTTGTGTTTGCAAGAATGATCAACTCCATTTTCGAAACACTTTCAAAGATTCTGTATTGTGTTGGCGGCTTATTGTATGCCTCAAGCTGTTTCATTGCTACGGCTATTCCCTATGGTACAAATTTTCATATCATTGTTATTGTCCTTTATACAATCTTCTGCATCATCTTCATCAGCTTCATCTTTCATCACTCACAACCCTTCACCACCTTCCTCCTCCGACACCCTTCCTCTTTAA

mRNA sequence

ATGTTGCATGCTTTGATTGTGGGGGCCGTCTGGTTTAGACAGGCCTACGGTGGAGTGAGGCGGAGCTTTGAAGTGGCGGCAGAGATGGTGGAGGAGTGGAAAGACATGATTATAGGATTCTGTGTGTCATCAGCTATTGGAATAGCAACAGTGTCTGTTCATATCAAAACCGAGCTTCCAAATTCATTTCAGCTTCTATCCATTGCTGTTTTGCTGTGTTTTGTGTCTGTTGTGTTTGCAAGAATGATCAACTCCATTTTCGAAACACTTTCAAAGATTCTGTATTGTGTTGGCGGCTTATTGTATGCCTCAAGCTGTTTCATTGCTACGGCTATTCCCTATGCTTCATCTTTCATCACTCACAACCCTTCACCACCTTCCTCCTCCGACACCCTTCCTCTTTAA

Coding sequence (CDS)

ATGTTGCATGCTTTGATTGTGGGGGCCGTCTGGTTTAGACAGGCCTACGGTGGAGTGAGGCGGAGCTTTGAAGTGGCGGCAGAGATGGTGGAGGAGTGGAAAGACATGATTATAGGATTCTGTGTGTCATCAGCTATTGGAATAGCAACAGTGTCTGTTCATATCAAAACCGAGCTTCCAAATTCATTTCAGCTTCTATCCATTGCTGTTTTGCTGTGTTTTGTGTCTGTTGTGTTTGCAAGAATGATCAACTCCATTTTCGAAACACTTTCAAAGATTCTGTATTGTGTTGGCGGCTTATTGTATGCCTCAAGCTGTTTCATTGCTACGGCTATTCCCTATGCTTCATCTTTCATCACTCACAACCCTTCACCACCTTCCTCCTCCGACACCCTTCCTCTTTAA

Protein sequence

MLHALIVGAVWFRQAYGGVRRSFEVAAEMVEEWKDMIIGFCVSSAIGIATVSVHIKTELPNSFQLLSIAVLLCFVSVVFARMINSIFETLSKILYCVGGLLYASSCFIATAIPYASSFITHNPSPPSSSDTLPL*

Homology

[Close]

BLAST of CsGy1G006170 vs. NCBI nr
Match: KAE8652531.1 (hypothetical protein Csa_013077, partial [Cucumis sativus])

HSP 1 Score: 191 bits (485), Expect = 1.92e-60
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0


Query: 15  AYGGVRRSFEVAAEMVEEWKDMIIGFCVSSAIGIATVSVHIKTELPNSFQLLSIAVLLCF 74
           AYGGVRRSFEVAAEMVEEWKDMIIGFCVSSAIGIATVSVHIKTELPNSFQLLSIAVLLCF
Sbjct: 1   AYGGVRRSFEVAAEMVEEWKDMIIGFCVSSAIGIATVSVHIKTELPNSFQLLSIAVLLCF 60

Query: 75  VSVVFARMINSIFETLSKILYCVGGLLYASSCFIATAIPY 114
           VSVVFARMINSIFETLSKILYCVGGLLYASSCFIATAIPY
Sbjct: 61  VSVVFARMINSIFETLSKILYCVGGLLYASSCFIATAIPY 100

[Close]

BLAST of CsGy1G006170 vs. NCBI nr
Match: KGN60003.2 (hypothetical protein Csa_000735, partial [Cucumis sativus])

HSP 1 Score: 134 bits (337), Expect = 5.75e-38
Identity = 71/86 (82.56%), Postives = 78/86 (90.70%), Query Frame = 0


Query: 9  AVWFRQAYGGVRRSFEVAAEMVEEWKDMIIGFCVSSAIGIATVSVHIKTELPNSFQLLSI 68
          AVWFRQ YGGVRRS EV AEMVEE K+MIIGFC+SSAIGIATVSV  KT+LPNSFQ LSI
Sbjct: 10 AVWFRQTYGGVRRSLEVVAEMVEERKEMIIGFCLSSAIGIATVSVQTKTKLPNSFQFLSI 69

Query: 69 AVLLCFVSVVFARMINSIFETLSKIL 94
          AVL+CF+SV FARMI+SIF+TLSKIL
Sbjct: 70 AVLICFLSVGFARMISSIFKTLSKIL 95

[Close]

BLAST of CsGy1G006170 vs. NCBI nr
Match: KAG6572911.1 (hypothetical protein SDJN03_26798, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 115 bits (288), Expect = 9.48e-30
Identity = 61/102 (59.80%), Postives = 75/102 (73.53%), Query Frame = 0


Query: 17  GGVRRSFEVAAEMVEEWKDMIIGFCVSSAIGIATVSVHIKTELPNSFQLLSIAVLLCFVS 76
           GG   +   AAEMVEEWKDMI+ FCVSSAI IATVSV I+ +LP  F  LS+ +LLCF  
Sbjct: 27  GGPSEAAVAAAEMVEEWKDMIVAFCVSSAIAIATVSVQIEKKLPRVFNFLSLTLLLCFGF 86

Query: 77  VVFARMINSIFETLSKILYCVGGLLYASSCFIATAIPYASSF 118
           V F +M  SI + +S+ILYCVGG+L  ++ FIA+AIPYAS F
Sbjct: 87  VAFGKMTKSILKRVSRILYCVGGVLGVTALFIASAIPYASYF 128

[Close]

BLAST of CsGy1G006170 vs. NCBI nr
Match: KAG6584385.1 (hypothetical protein SDJN03_20317, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 74.3 bits (181), Expect = 1.44e-13
Identity = 42/93 (45.16%), Postives = 62/93 (66.67%), Query Frame = 0


Query: 26  AAEMVEEWKDMIIGFCVSSAIGIATVSVHIKTELPNSFQLLSIAVLLCFVSVVFARMINS 85
           A EM+ +W++M++ FC+ +AI IATVSV I+T+L   FQ LS A++ CF     A++I  
Sbjct: 55  AVEMLMQWENMMVTFCMGTAIAIATVSVQIQTKLSPMFQFLSGALMGCFCFTTSAKLIKH 114

Query: 86  IFETLSKILYCVGGLLYASSCFIATAIPYASSF 118
             + +S ILY +GG  + ++ FIA AIPYA  F
Sbjct: 115 --QRVSLILYFLGGFCFVTAFFIAIAIPYAFHF 145

[Close]

BLAST of CsGy1G006170 vs. NCBI nr
Match: KAG2664501.1 (hypothetical protein I3760_16G085100 [Carya illinoinensis] >KAG6672839.1 hypothetical protein I3842_16G079300 [Carya illinoinensis])

HSP 1 Score: 58.9 bits (141), Expect = 8.85e-08
Identity = 32/100 (32.00%), Postives = 53/100 (53.00%), Query Frame = 0


Query: 20  RRSFEVAAEMVEEWKDMIIGFCVSSAIGIATVSVHIKTELPNSFQLLSIAVLLCFVSVVF 79
           + + EV  +   +W  +I+ F +SSAIG+A  SV +      +F+L    V LCF S   
Sbjct: 23  QHALEVGNQNNRDWVTIIVAFDLSSAIGVALTSVQLHPNFSPTFKLFCFTVSLCFASCFV 82

Query: 80  ARMINSIFETLSKILYCVGGLLYASSCFIATAIPYASSFI 119
           +  INS F  ++++LY VG     ++ F+A  IP+    +
Sbjct: 83  SHFINSEFPVIARVLYGVGIFFAVTAFFMAITIPFTDDLL 122

[Close]

BLAST of CsGy1G006170 vs. ExPASy TrEMBL
Match: A0A0A0LSX4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G040520 PE=4 SV=1)

HSP 1 Score: 258 bits (660), Expect = 5.82e-87
Identity = 134/134 (100.00%), Postives = 134/134 (100.00%), Query Frame = 0


Query: 1   MLHALIVGAVWFRQAYGGVRRSFEVAAEMVEEWKDMIIGFCVSSAIGIATVSVHIKTELP 60
           MLHALIVGAVWFRQAYGGVRRSFEVAAEMVEEWKDMIIGFCVSSAIGIATVSVHIKTELP
Sbjct: 1   MLHALIVGAVWFRQAYGGVRRSFEVAAEMVEEWKDMIIGFCVSSAIGIATVSVHIKTELP 60

Query: 61  NSFQLLSIAVLLCFVSVVFARMINSIFETLSKILYCVGGLLYASSCFIATAIPYASSFIT 120
           NSFQLLSIAVLLCFVSVVFARMINSIFETLSKILYCVGGLLYASSCFIATAIPYASSFIT
Sbjct: 61  NSFQLLSIAVLLCFVSVVFARMINSIFETLSKILYCVGGLLYASSCFIATAIPYASSFIT 120

Query: 121 HNPSPPSSSDTLPL 134
           HNPSPPSSSDTLPL
Sbjct: 121 HNPSPPSSSDTLPL 134

[Close]

BLAST of CsGy1G006170 vs. ExPASy TrEMBL
Match: A0A0A0LCY2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G851175 PE=4 SV=1)

HSP 1 Score: 181 bits (458), Expect = 7.00e-56
Identity = 101/146 (69.18%), Postives = 110/146 (75.34%), Query Frame = 0


Query: 9   AVWFRQAYGGVRRSFEVAAEMVEEWKDMIIGFCVSSAIGIATVSVHIKTELPNSFQLLSI 68
           AVWFRQ YGGVRRS EV AEMVEE K+MIIGFC+SSAIGIATVSV  KT+LPNSFQ LSI
Sbjct: 10  AVWFRQTYGGVRRSLEVVAEMVEERKEMIIGFCLSSAIGIATVSVQTKTKLPNSFQFLSI 69

Query: 69  AVLLCFVSVVFARMINSIFETLSKILYCVGGLLYASSCFIATAIPYASSF---------- 128
           AVL+CF+SV FARMI+SIF+TLSKILYC GG L A+ CFIATAIPY + F          
Sbjct: 70  AVLICFLSVGFARMISSIFKTLSKILYCFGGFLCATCCFIATAIPYDTHFHIIVIVLYSI 129

Query: 129 ----------ITHNPSPPSSSDTLPL 134
                     ITHNPS PSSS TLPL
Sbjct: 130 FCIIFVMLISITHNPSSPSSSHTLPL 155

[Close]

BLAST of CsGy1G006170 vs. ExPASy TrEMBL
Match: A0A0A0LQP5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G040510 PE=4 SV=1)

HSP 1 Score: 145 bits (366), Expect = 7.62e-42
Identity = 78/112 (69.64%), Postives = 88/112 (78.57%), Query Frame = 0


Query: 4   ALIVGA-VWFRQAYGGVRRSFEVAAEMVEEWKDMIIGFCVSSAIGIATVSVHIKTELPNS 63
           ALIV    WFRQ Y G RRS E+ AE VEE K+ IIG CVSSAIGI T SV IKT+LPNS
Sbjct: 6   ALIVAVGAWFRQPYCGARRSLEIVAETVEERKEFIIGLCVSSAIGIVTTSVQIKTKLPNS 65

Query: 64  FQLLSIAVLLCFVSVVFARMINSIFETLSKILYCVGGLLYASSCFIATAIPY 114
           FQ LS+ +LLCFVSVVFARMI S+F TLS+ILYCVG  + A++CFIATAI Y
Sbjct: 66  FQCLSMPILLCFVSVVFARMIESVFRTLSEILYCVGDFMCATTCFIATAISY 117

[Close]

BLAST of CsGy1G006170 vs. ExPASy TrEMBL
Match: A0A0A0LQB6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G041520 PE=4 SV=1)

HSP 1 Score: 116 bits (291), Expect = 1.91e-30
Identity = 66/105 (62.86%), Postives = 79/105 (75.24%), Query Frame = 0


Query: 16  YGGVRRSFEVAAEMVEEWKDMIIGFCVSSAIGIATVSVHIKT--ELPNSFQLLSIAVLLC 75
           +GG  R   + AEMVEEWK+MI+  CVSSAIGIATVSV I+T  +LP +FQ LSI VLLC
Sbjct: 32  HGG--RKLTMVAEMVEEWKEMIVALCVSSAIGIATVSVQIETNKQLPKTFQFLSIVVLLC 91

Query: 76  FVSVVFARMINSIFETLSKILYCVGGLLYASSCFIATAIPYASSF 118
           F  V FA+M   IF+T+SKILYCVGG L  ++ FIATAIP+A  F
Sbjct: 92  FGFVGFAKMTKPIFKTVSKILYCVGGFLGVTAFFIATAIPFAPYF 134

[Close]

BLAST of CsGy1G006170 vs. ExPASy TrEMBL
Match: A0A0A0LEV1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G000430 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 5.94e-13
Identity = 45/98 (45.92%), Postives = 60/98 (61.22%), Query Frame = 0


Query: 17  GGVRRSF-EVAAEMVEEWKDMIIGFCVSSAIGIATVSVHIKTELPNSFQLLSIAVLLCFV 76
           G V  SF EV A+MVEE K  IIGF  +    IA +SV  K +LP+SF+ +SI  LLC +
Sbjct: 3   GEVTESFVEVVAKMVEEQKIKIIGFHAAFTFAIAALSVQAKAKLPDSFEFVSITSLLCLL 62

Query: 77  SVVFARMINSIFETLSKILYCVGGLLYASSCFIATAIP 113
             V A +I+  F+T +K+LY +G     +S  IA AIP
Sbjct: 63  CFVSAMIIDFSFKTFAKVLYFLGAFFCMTSYLIAAAIP 100

The following BLAST results are available for this feature:

BLAST of CsGy1G006170 vs.


Match Name	E-value	Identity	Description

BLAST of CsGy1G006170 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8652531.1	1.92e-60	100.00	hypothetical protein Csa_013077, partial [Cucumis sativus]	[more]
KGN60003.2	5.75e-38	82.56	hypothetical protein Csa_000735, partial [Cucumis sativus]	[more]
KAG6572911.1	9.48e-30	59.80	hypothetical protein SDJN03_26798, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6584385.1	1.44e-13	45.16	hypothetical protein SDJN03_20317, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG2664501.1	8.85e-08	32.00	hypothetical protein I3760_16G085100 [Carya illinoinensis] >KAG6672839.1 hypothe...	[more]

BLAST of CsGy1G006170 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LSX4	5.82e-87	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G040520 PE=4 SV=1	[more]
A0A0A0LCY2	7.00e-56	69.18	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G851175 PE=4 SV=1	[more]
A0A0A0LQP5	7.62e-42	69.64	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G040510 PE=4 SV=1	[more]
A0A0A0LQB6	1.91e-30	62.86	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G041520 PE=4 SV=1	[more]
A0A0A0LEV1	5.94e-13	45.92	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G000430 PE=4 SV=1	[more]

BLAST of CsGy1G006170 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34741	IMAP FAMILY MEMBER 1, PUTATIVE-RELATED	coord: 14..118
None	No IPR available	PANTHER	PTHR34741:SF2	IMAP FAMILY MEMBER 1, PUTATIVE-RELATED	coord: 14..118

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy1G006170.2	CsGy1G006170.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045893	positive regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0000976	transcription cis-regulatory region binding