CsGy1G006160 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy1G006160
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	Unknown protein
Location	Gy14Chr1: 3995688 .. 3996167 (+)
RNA-Seq Expression	CsGy1G006160
Synteny	CsGy1G006160

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGGGTTGGTGTGCTTTGATTGTGGCCGTGGGGGCTTGGTTTAGACAGCCGTATTGTGGAGCGAGGAGAAGCTTGGAAATAGTGGCGGAGACGGTGGAGGAGAGGAAAGAATTTATTATAGGATTATGTGTATCATCGGCAATAGGGATAGTAACAACGTCTGTTCAAATCAAAACCAAGCTTCCAAATTCATTTCAGTGTCTGTCCATGCCTATTTTGCTGTGTTTTGTGTCTGTTGTGTTTGCAAGAATGATCGAATCAGTTTTCAGAACACTTTCAGAGATTCTGTATTGTGTTGGAGATTTCATGTGCGCTACAACCTGTTTCATTGCCACGGCCATTTCCTATGACGACGCACATTTTCATACCATCGTCATTGTCCTTTACTCAATCTTCTGTATCATCTGCATTATCTTCATCATCTTCATCTCCATCACCCACAACGACCCTTCATCACCTTCCTCCTCCAATATCTAG

mRNA sequence

ATGTTGGGTTGGTGTGCTTTGATTGTGGCCGTGGGGGCTTGGTTTAGACAGCCGTATTGTGGAGCGAGGAGAAGCTTGGAAATAGTGGCGGAGACGGTGGAGGAGAGGAAAGAATTTATTATAGGATTATGTGTATCATCGGCAATAGGGATAGTAACAACGTCTGTTCAAATCAAAACCAAGCTTCCAAATTCATTTCAGTGTCTGTCCATGCCTATTTTGCTGTGTTTTGTGTCTGTTGTGTTTGCAAGAATGATCGAATCAGTTTTCAGAACACTTTCAGAGATTCTGTATTGTGTTGGAGATTTCATGTGCGCTACAACCTGTTTCATTGCCACGGCCATTTCCTATGACGACGCACATTTTCATACCATCGTCATTGTCCTTTACTCAATCTTCTGTATCATCTGCATTATCTTCATCATCTTCATCTCCATCACCCACAACGACCCTTCATCACCTTCCTCCTCCAATATCTAG

Coding sequence (CDS)

ATGTTGGGTTGGTGTGCTTTGATTGTGGCCGTGGGGGCTTGGTTTAGACAGCCGTATTGTGGAGCGAGGAGAAGCTTGGAAATAGTGGCGGAGACGGTGGAGGAGAGGAAAGAATTTATTATAGGATTATGTGTATCATCGGCAATAGGGATAGTAACAACGTCTGTTCAAATCAAAACCAAGCTTCCAAATTCATTTCAGTGTCTGTCCATGCCTATTTTGCTGTGTTTTGTGTCTGTTGTGTTTGCAAGAATGATCGAATCAGTTTTCAGAACACTTTCAGAGATTCTGTATTGTGTTGGAGATTTCATGTGCGCTACAACCTGTTTCATTGCCACGGCCATTTCCTATGACGACGCACATTTTCATACCATCGTCATTGTCCTTTACTCAATCTTCTGTATCATCTGCATTATCTTCATCATCTTCATCTCCATCACCCACAACGACCCTTCATCACCTTCCTCCTCCAATATCTAG

Protein sequence

MLGWCALIVAVGAWFRQPYCGARRSLEIVAETVEERKEFIIGLCVSSAIGIVTTSVQIKTKLPNSFQCLSMPILLCFVSVVFARMIESVFRTLSEILYCVGDFMCATTCFIATAISYDDAHFHTIVIVLYSIFCIICIIFIIFISITHNDPSSPSSSNI*

Homology

[Close]

BLAST of CsGy1G006160 vs. NCBI nr
Match: KAE8652531.1 (hypothetical protein Csa_013077, partial [Cucumis sativus])

HSP 1 Score: 132 bits (331), Expect = 1.36e-36
Identity = 70/99 (70.71%), Postives = 80/99 (80.81%), Query Frame = 0


Query: 19  YCGARRSLEIVAETVEERKEFIIGLCVSSAIGIVTTSVQIKTKLPNSFQCLSMPILLCFV 78
           Y G RRS E+ AE VEE K+ IIG CVSSAIGI T SV IKT+LPNSFQ LS+ +LLCFV
Sbjct: 2   YGGVRRSFEVAAEMVEEWKDMIIGFCVSSAIGIATVSVHIKTELPNSFQLLSIAVLLCFV 61

Query: 79  SVVFARMIESVFRTLSEILYCVGDFMCATTCFIATAISY 117
           SVVFARMI S+F TLS+ILYCVG  + A++CFIATAI Y
Sbjct: 62  SVVFARMINSIFETLSKILYCVGGLLYASSCFIATAIPY 100

[Close]

BLAST of CsGy1G006160 vs. NCBI nr
Match: KGN60003.2 (hypothetical protein Csa_000735, partial [Cucumis sativus])

HSP 1 Score: 130 bits (326), Expect = 6.73e-36
Identity = 71/97 (73.20%), Postives = 80/97 (82.47%), Query Frame = 0


Query: 1  MLGWCALIVAVGAWFRQPYCGARRSLEIVAETVEERKEFIIGLCVSSAIGIVTTSVQIKT 60
          MLG CAL VAV  WFRQ Y G RRSLE+VAE VEERKE IIG C+SSAIGI T SVQ KT
Sbjct: 1  MLGQCALTVAV--WFRQTYGGVRRSLEVVAEMVEERKEMIIGFCLSSAIGIATVSVQTKT 60

Query: 61 KLPNSFQCLSMPILLCFVSVVFARMIESVFRTLSEIL 97
          KLPNSFQ LS+ +L+CF+SV FARMI S+F+TLS+IL
Sbjct: 61 KLPNSFQFLSIAVLICFLSVGFARMISSIFKTLSKIL 95

[Close]

BLAST of CsGy1G006160 vs. NCBI nr
Match: KAG6572911.1 (hypothetical protein SDJN03_26798, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 92.8 bits (229), Expect = 1.70e-20
Identity = 57/133 (42.86%), Postives = 79/133 (59.40%), Query Frame = 0


Query: 21  GARRSLEIVAETVEERKEFIIGLCVSSAIGIVTTSVQIKTKLPNSFQCLSMPILLCFVSV 80
           G   +    AE VEE K+ I+  CVSSAI I T SVQI+ KLP  F  LS+ +LLCF  V
Sbjct: 28  GPSEAAVAAAEMVEEWKDMIVAFCVSSAIAIATVSVQIEKKLPRVFNFLSLTLLLCFGFV 87

Query: 81  VFARMIESVFRTLSEILYCVGDFMCATTCFIATAISYDDAHFHTIVIVLYSIFCIICIIF 140
            F +M +S+ + +S ILYCVG  +  T  FIA+AI Y   +F  I+ ++Y IF      +
Sbjct: 88  AFGKMTKSILKRVSRILYCVGGVLGVTALFIASAIPYAS-YFQIIIFLIYLIF------W 147

Query: 141 IIFISITHNDPSS 153
           ++F+ + H   SS
Sbjct: 148 LMFMLVAHKSSSS 153

[Close]

BLAST of CsGy1G006160 vs. NCBI nr
Match: KAG6584385.1 (hypothetical protein SDJN03_20317, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 54.3 bits (129), Expect = 1.12e-05
Identity = 39/103 (37.86%), Postives = 58/103 (56.31%), Query Frame = 0


Query: 31  ETVEERKEFIIGLCVSSAIGIVTTSVQIKTKLPNSFQCLSMPILLCFVSVVFARMIESVF 90
           E + + +  ++  C+ +AI I T SVQI+TKL   FQ LS  ++ CF     A++I+   
Sbjct: 57  EMLMQWENMMVTFCMGTAIAIATVSVQIQTKLSPMFQFLSGALMGCFCFTTSAKLIKH-- 116

Query: 91  RTLSEILYCVGDFMCATTCFIATAISYDDAHFHTIVIVLYSIF 133
           + +S ILY +G F   T  FIA AI Y   HF  + + LY +F
Sbjct: 117 QRVSLILYFLGGFCFVTAFFIAIAIPYAF-HFQILTLALYLVF 156

[Close]

BLAST of CsGy1G006160 vs. NCBI nr
Match: KAG2664501.1 (hypothetical protein I3760_16G085100 [Carya illinoinensis] >KAG6672839.1 hypothetical protein I3842_16G079300 [Carya illinoinensis])

HSP 1 Score: 51.2 bits (121), Expect = 1.28e-04
Identity = 31/98 (31.63%), Postives = 49/98 (50.00%), Query Frame = 0


Query: 22  ARRSLEIVAETVEERKEFIIGLCVSSAIGIVTTSVQIKTKLPNSFQCLSMPILLCFVSVV 81
           A+ +LE+  +   +    I+   +SSAIG+  TSVQ+      +F+     + LCF S  
Sbjct: 22  AQHALEVGNQNNRDWVTIIVAFDLSSAIGVALTSVQLHPNFSPTFKLFCFTVSLCFASCF 81

Query: 82  FARMIESVFRTLSEILYCVGDFMCATTCFIATAISYDD 119
            +  I S F  ++ +LY VG F   T  F+A  I + D
Sbjct: 82  VSHFINSEFPVIARVLYGVGIFFAVTAFFMAITIPFTD 119

[Close]

BLAST of CsGy1G006160 vs. ExPASy TrEMBL
Match: A0A0A0LQP5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G040510 PE=4 SV=1)

HSP 1 Score: 308 bits (788), Expect = 1.14e-105
Identity = 159/159 (100.00%), Postives = 159/159 (100.00%), Query Frame = 0


Query: 1   MLGWCALIVAVGAWFRQPYCGARRSLEIVAETVEERKEFIIGLCVSSAIGIVTTSVQIKT 60
           MLGWCALIVAVGAWFRQPYCGARRSLEIVAETVEERKEFIIGLCVSSAIGIVTTSVQIKT
Sbjct: 1   MLGWCALIVAVGAWFRQPYCGARRSLEIVAETVEERKEFIIGLCVSSAIGIVTTSVQIKT 60

Query: 61  KLPNSFQCLSMPILLCFVSVVFARMIESVFRTLSEILYCVGDFMCATTCFIATAISYDDA 120
           KLPNSFQCLSMPILLCFVSVVFARMIESVFRTLSEILYCVGDFMCATTCFIATAISYDDA
Sbjct: 61  KLPNSFQCLSMPILLCFVSVVFARMIESVFRTLSEILYCVGDFMCATTCFIATAISYDDA 120

Query: 121 HFHTIVIVLYSIFCIICIIFIIFISITHNDPSSPSSSNI 159
           HFHTIVIVLYSIFCIICIIFIIFISITHNDPSSPSSSNI
Sbjct: 121 HFHTIVIVLYSIFCIICIIFIIFISITHNDPSSPSSSNI 159

[Close]

BLAST of CsGy1G006160 vs. ExPASy TrEMBL
Match: A0A0A0LCY2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G851175 PE=4 SV=1)

HSP 1 Score: 204 bits (519), Expect = 9.73e-65
Identity = 116/158 (73.42%), Postives = 129/158 (81.65%), Query Frame = 0


Query: 1   MLGWCALIVAVGAWFRQPYCGARRSLEIVAETVEERKEFIIGLCVSSAIGIVTTSVQIKT 60
           MLG CAL VAV  WFRQ Y G RRSLE+VAE VEERKE IIG C+SSAIGI T SVQ KT
Sbjct: 1   MLGQCALTVAV--WFRQTYGGVRRSLEVVAEMVEERKEMIIGFCLSSAIGIATVSVQTKT 60

Query: 61  KLPNSFQCLSMPILLCFVSVVFARMIESVFRTLSEILYCVGDFMCATTCFIATAISYDDA 120
           KLPNSFQ LS+ +L+CF+SV FARMI S+F+TLS+ILYC G F+CAT CFIATAI YD  
Sbjct: 61  KLPNSFQFLSIAVLICFLSVGFARMISSIFKTLSKILYCFGGFLCATCCFIATAIPYDT- 120

Query: 121 HFHTIVIVLYSIFCIICIIFIIFISITHNDPSSPSSSN 158
           HFH IVIVLYSIF   CIIF++ ISITHN PSSPSSS+
Sbjct: 121 HFHIIVIVLYSIF---CIIFVMLISITHN-PSSPSSSH 151

[Close]

BLAST of CsGy1G006160 vs. ExPASy TrEMBL
Match: A0A0A0LSX4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G040520 PE=4 SV=1)

HSP 1 Score: 147 bits (372), Expect = 1.11e-42
Identity = 88/153 (57.52%), Postives = 100/153 (65.36%), Query Frame = 0


Query: 6   ALIVAVGAWFRQPYCGARRSLEIVAETVEERKEFIIGLCVSSAIGIVTTSVQIKTKLPNS 65
           ALIV    WFRQ Y G RRS E+ AE VEE K+ IIG CVSSAIGI T SV IKT+LPNS
Sbjct: 4   ALIVGA-VWFRQAYGGVRRSFEVAAEMVEEWKDMIIGFCVSSAIGIATVSVHIKTELPNS 63

Query: 66  FQCLSMPILLCFVSVVFARMIESVFRTLSEILYCVGDFMCATTCFIATAISYDDAHFHTI 125
           FQ LS+ +LLCFVSVVFARMI S+F TLS+ILYCVG  + A++CFIATAI Y  +     
Sbjct: 64  FQLLSIAVLLCFVSVVFARMINSIFETLSKILYCVGGLLYASSCFIATAIPYASSF---- 123

Query: 126 VIVLYSIFCIICIIFIIFISITHNDPSSPSSSN 158
                               ITHN PS PSSS+
Sbjct: 124 --------------------ITHN-PSPPSSSD 130

[Close]

BLAST of CsGy1G006160 vs. ExPASy TrEMBL
Match: A0A0A0LQB6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G041520 PE=4 SV=1)

HSP 1 Score: 112 bits (280), Expect = 2.11e-28
Identity = 69/132 (52.27%), Postives = 92/132 (69.70%), Query Frame = 0


Query: 24  RSLEIVAETVEERKEFIIGLCVSSAIGIVTTSVQIKT--KLPNSFQCLSMPILLCFVSVV 83
           R L +VAE VEE KE I+ LCVSSAIGI T SVQI+T  +LP +FQ LS+ +LLCF  V 
Sbjct: 35  RKLTMVAEMVEEWKEMIVALCVSSAIGIATVSVQIETNKQLPKTFQFLSIVVLLCFGFVG 94

Query: 84  FARMIESVFRTLSEILYCVGDFMCATTCFIATAISYDDAHFHTIVIVLYSIFCIICIIFI 143
           FA+M + +F+T+S+ILYCVG F+  T  FIATAI +   +F  I+ +LY +F   C IF+
Sbjct: 95  FAKMTKPIFKTVSKILYCVGGFLGVTAFFIATAIPFAP-YFQIIIFILYLLF---CFIFM 154

Query: 144 IFISITHNDPSS 153
           +  +I +  PSS
Sbjct: 155 LITTIHNQQPSS 162

[Close]

BLAST of CsGy1G006160 vs. ExPASy TrEMBL
Match: A0A0A0LEV1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G000430 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 1.85e-15
Identity = 52/131 (39.69%), Postives = 80/131 (61.07%), Query Frame = 0


Query: 26  LEIVAETVEERKEFIIGLCVSSAIGIVTTSVQIKTKLPNSFQCLSMPILLCFVSVVFARM 85
           +E+VA+ VEE+K  IIG   +    I   SVQ K KLP+SF+ +S+  LLC +  V A +
Sbjct: 10  VEVVAKMVEEQKIKIIGFHAAFTFAIAALSVQAKAKLPDSFEFVSITSLLCLLCFVSAMI 69

Query: 86  IESVFRTLSEILYCVGDFMCATTCFIATAISYDDAHFHTIVIVLYSIFCIICIIFIIFIS 145
           I+  F+T +++LY +G F C T+  IA AI     +FH ++I+L   F I CI  +I +S
Sbjct: 70  IDFSFKTFAKVLYFLGAFFCMTSYLIAAAIP-SQMYFHVLLILL---FLISCITLVILMS 129

Query: 146 ITHNDPSSPSS 156
            T + P+S ++
Sbjct: 130 NTCSPPNSTTN 136

The following BLAST results are available for this feature:

BLAST of CsGy1G006160 vs.


Match Name	E-value	Identity	Description

BLAST of CsGy1G006160 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8652531.1	1.36e-36	70.71	hypothetical protein Csa_013077, partial [Cucumis sativus]	[more]
KGN60003.2	6.73e-36	73.20	hypothetical protein Csa_000735, partial [Cucumis sativus]	[more]
KAG6572911.1	1.70e-20	42.86	hypothetical protein SDJN03_26798, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6584385.1	1.12e-05	37.86	hypothetical protein SDJN03_20317, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG2664501.1	1.28e-04	31.63	hypothetical protein I3760_16G085100 [Carya illinoinensis] >KAG6672839.1 hypothe...	[more]

BLAST of CsGy1G006160 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LQP5	1.14e-105	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G040510 PE=4 SV=1	[more]
A0A0A0LCY2	9.73e-65	73.42	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G851175 PE=4 SV=1	[more]
A0A0A0LSX4	1.11e-42	57.52	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G040520 PE=4 SV=1	[more]
A0A0A0LQB6	2.11e-28	52.27	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G041520 PE=4 SV=1	[more]
A0A0A0LEV1	1.85e-15	39.69	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G000430 PE=4 SV=1	[more]

BLAST of CsGy1G006160 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34741	IMAP FAMILY MEMBER 1, PUTATIVE-RELATED	coord: 17..142
None	No IPR available	PANTHER	PTHR34741:SF2	IMAP FAMILY MEMBER 1, PUTATIVE-RELATED	coord: 17..142

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy1G006160.1	CsGy1G006160.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045893	positive regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0000976	transcription cis-regulatory region binding