CsGy1G005890 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy1G005890
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	mitochondrial import receptor subunit TOM5 homolog
Location	Gy14Chr1: 3845643 .. 3847619 (-)
RNA-Seq Expression	CsGy1G005890
Synteny	CsGy1G005890

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGACGATTCTAGCTCGGTGAAGAAGGTGAAGAATCTTCTCTTTTCCGGTACGGCCAATTCCGTCGAGACTGTGAAATCCTTTTTCAATTCTCAGGTTTATGACGAAGAAAAGTGGGCCTTGAACATGGTACGCTTCCGATCCTTTTAAATTTCATTCCAATATTTATCTTTTTTCTTAACCTGGATTTTTCGATCTCCCAAAATCTGCTAAATGTGATTTCGAGGATTGGGCATCATCGGTTTTGTTTTTTATATTGCATTATTAAGGCCTTGTAATATGTTTGGTAGCTGAGAAAGTTTGAGAAATCGTGTGAGCTTTTTTTTTTCATTTACCGTAAGAAGTGTCGATCTTTTAATGGAAATGCGCAATTTATAGTCTGACACTTTGGGTTTAAGTCATACTCGAAGCTGTTGAGCGTTATGATTGTTTTGAAATTAAAGATATTCAGGAGGAAATGTAAGTTTCTCGTAGACCAGTCTTGCTAGAAAACATTTGGTTATATTAAATTCAAGAACTTGTTGGATGGGCTATTTGTGAAGTTGTATGTGTTTAGAGCAGTTAGCAGTCTTCTCACTTTATCTGAATTTGTTGCGTTTCCTTCTGGTTCGACACCTTACTTTTTGTTGTCTCAGACTGTGATTGTTTTTTTTCTCTTCTCACTTTTGAAATTGCCTATTAGAGTAAAAGGAAGAAAAAATGTAATTTTTGGTTTTGGGTGATTACAAACAAGCAGTAGGTTTGTCTATGTTTAGCACTTTTATTGGGTTGTTGGAGCTGGGAAGATTAAGGGGAGAATTGGATGTAATGCATTTGGGTTGGTTCTCTATATTTTTCCACTCATTTAAATCTATGTTTCAACTCAAGCCAAGGCTCTTTAGCATGTCTTGCGTGATGATTAAAATAACGAAACTAATTTGCTCAAGTCTGAAAAATGTAAAGCTTCCCTTGTGCACGGAATGTAAATACGTGAGTTGTTGTGACAAAAGATTTAATTACATTGAAGATCATTTTTTTAGAATAAGTCGATCTTGATTATAGACGTGATGCTAAGGATGACATTTTATAACTTTTAATTATGTGGACAGAGTTGTCCATATATATGTTTATATACACAAACATTTCTATAGAACTATTATTATGTATGTTGCAACACTTGATGGATCATACAATACTAGGATTTGTATTTTATTAAATTTGAAGCTTGCATCCTATTGCCACCTTGATGCCTATGCATGGCTTCTTCAAGAGGAAATCCTCAAGACTTCCTTTAGCTTTTTAAAATGTTGATTCAATTATAATAATTTGCAGAAAATTACATTGATTTGTTCTGTTTTTTCTGAGTATTCGGTTAGAGTTGTAAATGCATAACTATCTCATCTCATGCCTGTGTCATATGCGTCATTTATCTATTGAATCTGAAACATAAAACTGAACACGATATGCAGTTTTCCATTTCCAATAAGAATCACTTTTTGGAAAGAAAAGAAAAAACGAGTAAGCCTCATTGCTGTCTCTGCAAGTAAATTTGAACTTTAAGGCAGGCAGCATAAGAAGTATTATTCTCAAGGGAACATCCAGAGTGAGATCGGCAGATGCCCTCGTGCATGAAAAGAATGATTTGGCTTTGGCATTAAGAAGAGGGATGAACGCTCCAATTGGGTTGTAGTTGCAATAGAGCTACCTTACTTAATTCATTATTTGGGACTTGGGAAAATATTGTTAGATTTTGTATGGTCGTGCTTATGTGAATTCTCTGTTTGACTCCTAAAGAAAAGTATATTTCTTTGTTTTTTCTAAATTGAAATATCAGGCACAGAAACACGTGTCCTTGGTATCATGGTATGGCTGTATTTTATAAATAGAACTGAATTTCAACTCTCTTCGTTGTTGCAGAAATTACTTCGTGCTGCGGGGATGTTTGCAGGATCTATCCTTCTCATGCGGAATTATGGAGATCTGATGACAATATGA

mRNA sequence

ATGGCTGACGATTCTAGCTCGGTGAAGAAGGTGAAGAATCTTCTCTTTTCCGGTACGGCCAATTCCGTCGAGACTGTGAAATCCTTTTTCAATTCTCAGGTTTATGACGAAGAAAAGTGGGCCTTGAACATGAAATTACTTCGTGCTGCGGGGATGTTTGCAGGATCTATCCTTCTCATGCGGAATTATGGAGATCTGATGACAATATGA

Coding sequence (CDS)

ATGGCTGACGATTCTAGCTCGGTGAAGAAGGTGAAGAATCTTCTCTTTTCCGGTACGGCCAATTCCGTCGAGACTGTGAAATCCTTTTTCAATTCTCAGGTTTATGACGAAGAAAAGTGGGCCTTGAACATGAAATTACTTCGTGCTGCGGGGATGTTTGCAGGATCTATCCTTCTCATGCGGAATTATGGAGATCTGATGACAATATGA

Protein sequence

MADDSSSVKKVKNLLFSGTANSVETVKSFFNSQVYDEEKWALNMKLLRAAGMFAGSILLMRNYGDLMTI*

Homology

[Close]

BLAST of CsGy1G005890 vs. ExPASy Swiss-Prot
Match: Q9SD80 (Mitochondrial import receptor subunit TOM5 homolog OS=Arabidopsis thaliana OX=3702 GN=TOM5 PE=1 SV=3)

HSP 1 Score: 71.2 bits (173), Expect = 5.1e-12
Identity = 30/48 (62.50%), Postives = 43/48 (89.58%), Query Frame = 0


Query: 22 SVETVKSFFNSQVYDEEKWALNMKLLRAAGMFAGSILLMRNYGDLMTI 70
          S+E +K+ ++S+V+DE+KWA+NMKLLRA GMFAG ++LMR+YGDLM +
Sbjct: 7  SIEKMKALWHSEVHDEQKWAVNMKLLRALGMFAGGVVLMRSYGDLMGV 54

[Close]

BLAST of CsGy1G005890 vs. NCBI nr
Match: XP_004137442.1 (mitochondrial import receptor subunit TOM5 homolog [Cucumis sativus] >XP_008451171.1 PREDICTED: mitochondrial import receptor subunit TOM5 homolog [Cucumis melo] >TYJ98941.1 mitochondrial import receptor subunit TOM5-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 134 bits (338), Expect = 1.43e-39
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 0


Query: 1  MADDSSSVKKVKNLLFSGTANSVETVKSFFNSQVYDEEKWALNMKLLRAAGMFAGSILLM 60
          MADDSSSVKKVKNLLFSGTANSVETVKSFFNSQVYDEEKWALNMKLLRAAGMFAGSILLM
Sbjct: 1  MADDSSSVKKVKNLLFSGTANSVETVKSFFNSQVYDEEKWALNMKLLRAAGMFAGSILLM 60

Query: 61 RNYGDLMTI 69
          RNYGDLMTI
Sbjct: 61 RNYGDLMTI 69

[Close]

BLAST of CsGy1G005890 vs. NCBI nr
Match: XP_038894051.1 (mitochondrial import receptor subunit TOM5 homolog [Benincasa hispida])

HSP 1 Score: 128 bits (321), Expect = 5.61e-37
Identity = 66/69 (95.65%), Postives = 66/69 (95.65%), Query Frame = 0


Query: 1  MADDSSSVKKVKNLLFSGTANSVETVKSFFNSQVYDEEKWALNMKLLRAAGMFAGSILLM 60
          MAD SSSV KVKN LFSGTANSVETVKSFFNSQVYDEEKWALNMKLLRAAGMFAGSILLM
Sbjct: 1  MADASSSVNKVKNFLFSGTANSVETVKSFFNSQVYDEEKWALNMKLLRAAGMFAGSILLM 60

Query: 61 RNYGDLMTI 69
          RNYGDLMTI
Sbjct: 61 RNYGDLMTI 69

[Close]

BLAST of CsGy1G005890 vs. NCBI nr
Match: KAG6572899.1 (Mitochondrial import receptor subunit TOM5-like protein, partial [Cucurbita argyrosperma subsp. sororia] >KAG7012088.1 Mitochondrial import receptor subunit TOM5-like protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 124 bits (310), Expect = 2.68e-35
Identity = 63/69 (91.30%), Postives = 65/69 (94.20%), Query Frame = 0


Query: 1  MADDSSSVKKVKNLLFSGTANSVETVKSFFNSQVYDEEKWALNMKLLRAAGMFAGSILLM 60
          M D SSSVKKVKN +FSGTANSVETVKSFFNSQV+DEEKWALNMKLLRAAGMFAGSILLM
Sbjct: 1  MGDASSSVKKVKNFIFSGTANSVETVKSFFNSQVHDEEKWALNMKLLRAAGMFAGSILLM 60

Query: 61 RNYGDLMTI 69
          RNYGDLM I
Sbjct: 61 RNYGDLMAI 69

[Close]

BLAST of CsGy1G005890 vs. NCBI nr
Match: XP_022924183.1 (mitochondrial import receptor subunit TOM5 homolog [Cucurbita moschata] >XP_023001126.1 mitochondrial import receptor subunit TOM5 homolog [Cucurbita maxima] >XP_023520288.1 mitochondrial import receptor subunit TOM5 homolog [Cucurbita pepo subsp. pepo] >KAG6584406.1 Mitochondrial import receptor subunit TOM5-like protein, partial [Cucurbita argyrosperma subsp. sororia] >KAG7019992.1 Mitochondrial import receptor subunit TOM5-like protein [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 123 bits (309), Expect = 3.81e-35
Identity = 63/69 (91.30%), Postives = 65/69 (94.20%), Query Frame = 0


Query: 1  MADDSSSVKKVKNLLFSGTANSVETVKSFFNSQVYDEEKWALNMKLLRAAGMFAGSILLM 60
          M D SSSVKKVKN LFSGTANSVETVKSF+NSQV+DEEKWALNMKLLRAAGMFAGSILLM
Sbjct: 1  MVDASSSVKKVKNFLFSGTANSVETVKSFYNSQVHDEEKWALNMKLLRAAGMFAGSILLM 60

Query: 61 RNYGDLMTI 69
          RNYGDLM I
Sbjct: 61 RNYGDLMAI 69

[Close]

BLAST of CsGy1G005890 vs. NCBI nr
Match: XP_022137624.1 (mitochondrial import receptor subunit TOM5 homolog [Momordica charantia])

HSP 1 Score: 116 bits (290), Expect = 3.02e-32
Identity = 58/69 (84.06%), Postives = 64/69 (92.75%), Query Frame = 0


Query: 1  MADDSSSVKKVKNLLFSGTANSVETVKSFFNSQVYDEEKWALNMKLLRAAGMFAGSILLM 60
          MAD SSS+KKVKN + SGT+NSVETV+SF NSQ++DEEKWALNMKLLRAAGMFAGSILLM
Sbjct: 1  MADASSSMKKVKNFICSGTSNSVETVRSFLNSQIHDEEKWALNMKLLRAAGMFAGSILLM 60

Query: 61 RNYGDLMTI 69
          RNYGDLM I
Sbjct: 61 RNYGDLMAI 69

[Close]

BLAST of CsGy1G005890 vs. ExPASy TrEMBL
Match: A0A5D3BJP0 (Mitochondrial import receptor subunit TOM5-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G001420 PE=4 SV=1)

HSP 1 Score: 134 bits (338), Expect = 6.91e-40
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 0


Query: 1  MADDSSSVKKVKNLLFSGTANSVETVKSFFNSQVYDEEKWALNMKLLRAAGMFAGSILLM 60
          MADDSSSVKKVKNLLFSGTANSVETVKSFFNSQVYDEEKWALNMKLLRAAGMFAGSILLM
Sbjct: 1  MADDSSSVKKVKNLLFSGTANSVETVKSFFNSQVYDEEKWALNMKLLRAAGMFAGSILLM 60

Query: 61 RNYGDLMTI 69
          RNYGDLMTI
Sbjct: 61 RNYGDLMTI 69

[Close]

BLAST of CsGy1G005890 vs. ExPASy TrEMBL
Match: A0A0A0LSV3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G039240 PE=4 SV=1)

HSP 1 Score: 134 bits (338), Expect = 6.91e-40
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 0


Query: 1  MADDSSSVKKVKNLLFSGTANSVETVKSFFNSQVYDEEKWALNMKLLRAAGMFAGSILLM 60
          MADDSSSVKKVKNLLFSGTANSVETVKSFFNSQVYDEEKWALNMKLLRAAGMFAGSILLM
Sbjct: 1  MADDSSSVKKVKNLLFSGTANSVETVKSFFNSQVYDEEKWALNMKLLRAAGMFAGSILLM 60

Query: 61 RNYGDLMTI 69
          RNYGDLMTI
Sbjct: 61 RNYGDLMTI 69

[Close]

BLAST of CsGy1G005890 vs. ExPASy TrEMBL
Match: A0A1S3BQV4 (mitochondrial import receptor subunit TOM5 homolog OS=Cucumis melo OX=3656 GN=LOC103492520 PE=4 SV=1)

HSP 1 Score: 134 bits (338), Expect = 6.91e-40
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 0


Query: 1  MADDSSSVKKVKNLLFSGTANSVETVKSFFNSQVYDEEKWALNMKLLRAAGMFAGSILLM 60
          MADDSSSVKKVKNLLFSGTANSVETVKSFFNSQVYDEEKWALNMKLLRAAGMFAGSILLM
Sbjct: 1  MADDSSSVKKVKNLLFSGTANSVETVKSFFNSQVYDEEKWALNMKLLRAAGMFAGSILLM 60

Query: 61 RNYGDLMTI 69
          RNYGDLMTI
Sbjct: 61 RNYGDLMTI 69

[Close]

BLAST of CsGy1G005890 vs. ExPASy TrEMBL
Match: A0A6J1KHR6 (mitochondrial import receptor subunit TOM5 homolog OS=Cucurbita maxima OX=3661 GN=LOC111495362 PE=4 SV=1)

HSP 1 Score: 123 bits (309), Expect = 1.84e-35
Identity = 63/69 (91.30%), Postives = 65/69 (94.20%), Query Frame = 0


Query: 1  MADDSSSVKKVKNLLFSGTANSVETVKSFFNSQVYDEEKWALNMKLLRAAGMFAGSILLM 60
          M D SSSVKKVKN LFSGTANSVETVKSF+NSQV+DEEKWALNMKLLRAAGMFAGSILLM
Sbjct: 1  MVDASSSVKKVKNFLFSGTANSVETVKSFYNSQVHDEEKWALNMKLLRAAGMFAGSILLM 60

Query: 61 RNYGDLMTI 69
          RNYGDLM I
Sbjct: 61 RNYGDLMAI 69

[Close]

BLAST of CsGy1G005890 vs. ExPASy TrEMBL
Match: A0A6J1EBN7 (mitochondrial import receptor subunit TOM5 homolog OS=Cucurbita moschata OX=3662 GN=LOC111431705 PE=4 SV=1)

HSP 1 Score: 123 bits (309), Expect = 1.84e-35
Identity = 63/69 (91.30%), Postives = 65/69 (94.20%), Query Frame = 0


Query: 1  MADDSSSVKKVKNLLFSGTANSVETVKSFFNSQVYDEEKWALNMKLLRAAGMFAGSILLM 60
          M D SSSVKKVKN LFSGTANSVETVKSF+NSQV+DEEKWALNMKLLRAAGMFAGSILLM
Sbjct: 1  MVDASSSVKKVKNFLFSGTANSVETVKSFYNSQVHDEEKWALNMKLLRAAGMFAGSILLM 60

Query: 61 RNYGDLMTI 69
          RNYGDLM I
Sbjct: 61 RNYGDLMAI 69

[Close]

BLAST of CsGy1G005890 vs. TAIR 10
Match: AT5G08040.1 (mitochondrial import receptor subunit TOM5 homolog )

HSP 1 Score: 71.2 bits (173), Expect = 3.6e-13
Identity = 30/48 (62.50%), Postives = 43/48 (89.58%), Query Frame = 0


Query: 22 SVETVKSFFNSQVYDEEKWALNMKLLRAAGMFAGSILLMRNYGDLMTI 70
          S+E +K+ ++S+V+DE+KWA+NMKLLRA GMFAG ++LMR+YGDLM +
Sbjct: 7  SIEKMKALWHSEVHDEQKWAVNMKLLRALGMFAGGVVLMRSYGDLMGV 54

The following BLAST results are available for this feature:

BLAST of CsGy1G005890 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SD80	5.1e-12	62.50	Mitochondrial import receptor subunit TOM5 homolog OS=Arabidopsis thaliana OX=37...	[more]

BLAST of CsGy1G005890 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004137442.1	1.43e-39	100.00	mitochondrial import receptor subunit TOM5 homolog [Cucumis sativus] >XP_0084511...	[more]
XP_038894051.1	5.61e-37	95.65	mitochondrial import receptor subunit TOM5 homolog [Benincasa hispida]	[more]
KAG6572899.1	2.68e-35	91.30	Mitochondrial import receptor subunit TOM5-like protein, partial [Cucurbita argy...	[more]
XP_022924183.1	3.81e-35	91.30	mitochondrial import receptor subunit TOM5 homolog [Cucurbita moschata] >XP_0230...	[more]
XP_022137624.1	3.02e-32	84.06	mitochondrial import receptor subunit TOM5 homolog [Momordica charantia]	[more]

BLAST of CsGy1G005890 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BJP0	6.91e-40	100.00	Mitochondrial import receptor subunit TOM5-like protein OS=Cucumis melo var. mak...	[more]
A0A0A0LSV3	6.91e-40	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G039240 PE=4 SV=1	[more]
A0A1S3BQV4	6.91e-40	100.00	mitochondrial import receptor subunit TOM5 homolog OS=Cucumis melo OX=3656 GN=LO...	[more]
A0A6J1KHR6	1.84e-35	91.30	mitochondrial import receptor subunit TOM5 homolog OS=Cucurbita maxima OX=3661 G...	[more]
A0A6J1EBN7	1.84e-35	91.30	mitochondrial import receptor subunit TOM5 homolog OS=Cucurbita moschata OX=3662...	[more]

BLAST of CsGy1G005890 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G08040.1	3.6e-13	62.50	mitochondrial import receptor subunit TOM5 homolog	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR37251:SF1	MITOCHONDRIAL IMPORT RECEPTOR SUBUNIT TOM5 HOMOLOG	coord: 19..69
IPR034553	Mitochondrial import receptor subunit TOM5 homologue, viridiplantae	PANTHER	PTHR37251	MITOCHONDRIAL IMPORT RECEPTOR SUBUNIT TOM5 HOMOLOG	coord: 19..69

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy1G005890.2	CsGy1G005890.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005742	mitochondrial outer membrane translocase complex