CsGy1G005885 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy1G005885
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	Unknown protein
Location	Gy14Chr1: 3838672 .. 3838995 (+)
RNA-Seq Expression	CsGy1G005885
Synteny	CsGy1G005885

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAAGAATCCACGTGGTGATCAGTGGTGAGGGGTTCACATCGTGTACGGTTAGAGAGAAACGGAGGTTCTGGGTGAGTGTGGGTTTCAAGTTGCAGGTGGAGGCTCCAATCAGCCACTCCCACCACCTGCAAGTAGCCGTAATACTCGCCCCCCTTCTCCAATTTCTGGCAGGTGTTGCTGTTGTTATTGCTGTTAGTGTGAGTGTTTCTCTTTGTAATTTTCTTCAAAATTTCGTCTCAATTTCTTATTCAACTTTCCTTTCCCAACTTCTTTGCTTTGCTTTTTGTTATTACCCACGCACACTCCCTTCCCCCACCTAA

mRNA sequence

ATGGGAAGAATCCACGTGGTGATCAGTGGTGAGGGGTTCACATCGTGTACGGTTAGAGAGAAACGGAGGTTCTGGGTGAGTGTGGGTTTCAAGTTGCAGGTGGAGGCTCCAATCAGCCACTCCCACCACCTGCAAGTAGCCGTAATACTCGCCCCCCTTCTCCAATTTCTGGCAGGTGTTGCTGTTGTTATTGCTGTTAGTGTGAGTGTTTCTCTTTGTAATTTTCTTCAAAATTTCGTCTCAATTTCTTATTCAACTTTCCTTTCCCAACTTCTTTGCTTTGCTTTTTGTTATTACCCACGCACACTCCCTTCCCCCACCTAA

Coding sequence (CDS)

ATGGGAAGAATCCACGTGGTGATCAGTGGTGAGGGGTTCACATCGTGTACGGTTAGAGAGAAACGGAGGTTCTGGGTGAGTGTGGGTTTCAAGTTGCAGGTGGAGGCTCCAATCAGCCACTCCCACCACCTGCAAGTAGCCGTAATACTCGCCCCCCTTCTCCAATTTCTGGCAGGTGTTGCTGTTGTTATTGCTGTTAGTGTGAGTGTTTCTCTTTGTAATTTTCTTCAAAATTTCGTCTCAATTTCTTATTCAACTTTCCTTTCCCAACTTCTTTGCTTTGCTTTTTGTTATTACCCACGCACACTCCCTTCCCCCACCTAA

Protein sequence

MGRIHVVISGEGFTSCTVREKRRFWVSVGFKLQVEAPISHSHHLQVAVILAPLLQFLAGVAVVIAVSVSVSLCNFLQNFVSISYSTFLSQLLCFAFCYYPRTLPSPT*

Homology

[Close]

BLAST of CsGy1G005885 vs. NCBI nr
Match: KGN64058.1 (hypothetical protein Csa_013493 [Cucumis sativus])

HSP 1 Score: 207 bits (528), Expect = 2.22e-67
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 0


Query: 1   MGRIHVVISGEGFTSCTVREKRRFWVSVGFKLQVEAPISHSHHLQVAVILAPLLQFLAGV 60
           MGRIHVVISGEGFTSCTVREKRRFWVSVGFKLQVEAPISHSHHLQVAVILAPLLQFLAGV
Sbjct: 1   MGRIHVVISGEGFTSCTVREKRRFWVSVGFKLQVEAPISHSHHLQVAVILAPLLQFLAGV 60

Query: 61  AVVIAVSVSVSLCNFLQNFVSISYSTFLSQLLCFAFCYYPRTLPSPT 107
           AVVIAVSVSVSLCNFLQNFVSISYSTFLSQLLCFAFCYYPRTLPSPT
Sbjct: 61  AVVIAVSVSVSLCNFLQNFVSISYSTFLSQLLCFAFCYYPRTLPSPT 107

[Close]

BLAST of CsGy1G005885 vs. ExPASy TrEMBL
Match: A0A0A0LQM3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G039235 PE=4 SV=1)

HSP 1 Score: 207 bits (528), Expect = 1.08e-67
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 0


Query: 1   MGRIHVVISGEGFTSCTVREKRRFWVSVGFKLQVEAPISHSHHLQVAVILAPLLQFLAGV 60
           MGRIHVVISGEGFTSCTVREKRRFWVSVGFKLQVEAPISHSHHLQVAVILAPLLQFLAGV
Sbjct: 1   MGRIHVVISGEGFTSCTVREKRRFWVSVGFKLQVEAPISHSHHLQVAVILAPLLQFLAGV 60

Query: 61  AVVIAVSVSVSLCNFLQNFVSISYSTFLSQLLCFAFCYYPRTLPSPT 107
           AVVIAVSVSVSLCNFLQNFVSISYSTFLSQLLCFAFCYYPRTLPSPT
Sbjct: 61  AVVIAVSVSVSLCNFLQNFVSISYSTFLSQLLCFAFCYYPRTLPSPT 107

The following BLAST results are available for this feature:

BLAST of CsGy1G005885 vs.


Match Name	E-value	Identity	Description

BLAST of CsGy1G005885 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN64058.1	2.22e-67	100.00	hypothetical protein Csa_013493 [Cucumis sativus]	[more]

BLAST of CsGy1G005885 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LQM3	1.08e-67	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G039235 PE=4 SV=1	[more]

BLAST of CsGy1G005885 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy1G005885.1	CsGy1G005885.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane