CsGy1G004665 (gene) Cucumber (Gy14) v2.1

Overview
NameCsGy1G004665
Typegene
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
DescriptionTPT domain-containing protein
LocationGy14Chr1: 2989913 .. 2990125 (-)
RNA-Seq ExpressionCsGy1G004665
SyntenyCsGy1G004665
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACTCACAAACGCTCTTCTTCGTTCCATTTCACCATTGTCATAACTGTTAGCGTTCCTCCGTCTCCATTAAAGCCCACGCAGACTGCTCCAATCAATCTTCTTTGCATAATATTATGTTACAGATACTCTCCTAGCGCACCGCAAAAACCTACCCATCTCTCTTCGCGGTATGTCCCTTTCTTTTTCTTCACTTTTCTGTCCACCTGGTAG

mRNA sequence

ATGACTCACAAACGCTCTTCTTCGTTCCATTTCACCATTGTCATAACTGTTAGCGTTCCTCCGTCTCCATTAAAGCCCACGCAGACTGCTCCAATCAATCTTCTTTGCATAATATTATGTTACAGATACTCTCCTAGCGCACCGCAAAAACCTACCCATCTCTCTTCGCGGTATGTCCCTTTCTTTTTCTTCACTTTTCTGTCCACCTGGTAG

Coding sequence (CDS)

ATGACTCACAAACGCTCTTCTTCGTTCCATTTCACCATTGTCATAACTGTTAGCGTTCCTCCGTCTCCATTAAAGCCCACGCAGACTGCTCCAATCAATCTTCTTTGCATAATATTATGTTACAGATACTCTCCTAGCGCACCGCAAAAACCTACCCATCTCTCTTCGCGGTATGTCCCTTTCTTTTTCTTCACTTTTCTGTCCACCTGGTAG

Protein sequence

MTHKRSSSFHFTIVITVSVPPSPLKPTQTAPINLLCIILCYRYSPSAPQKPTHLSSRYVPFFFFTFLSTW*
Homology
[Close]
BLAST of CsGy1G004665 vs. NCBI nr
Match: KAE8652482.1 (hypothetical protein Csa_013341 [Cucumis sativus])

HSP 1 Score: 149 bits (375), Expect = 3.44e-45
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 0 

Query: 1  MTHKRSSSFHFTIVITVSVPPSPLKPTQTAPINLLCIILCYRYSPSAPQKPTHLSSRYVP 60
          MTHKRSSSFHFTIVITVSVPPSPLKPTQTAPINLLCIILCYRYSPSAPQKPTHLSSRYVP
Sbjct: 1  MTHKRSSSFHFTIVITVSVPPSPLKPTQTAPINLLCIILCYRYSPSAPQKPTHLSSRYVP 60

Query: 61 FFFFTFLSTW 70
          FFFFTFLSTW
Sbjct: 61 FFFFTFLSTW 70

[Close]
BLAST of CsGy1G004665 vs. ExPASy TrEMBL
Match: A0A0A0LSE9 (TPT domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G025990 PE=4 SV=1)

HSP 1 Score: 121 bits (304), Expect = 4.04e-31
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 0 

Query: 1  MTHKRSSSFHFTIVITVSVPPSPLKPTQTAPINLLCIILCYRYSPSAPQKPTHLSSR 57
          MTHKRSSSFHFTIVITVSVPPSPLKPTQTAPINLLCIILCYRYSPSAPQKPTHLSSR
Sbjct: 1  MTHKRSSSFHFTIVITVSVPPSPLKPTQTAPINLLCIILCYRYSPSAPQKPTHLSSR 57

The following BLAST results are available for this feature:
BLAST of CsGy1G004665 vs.
Match NameE-valueIdentityDescription
BLAST of CsGy1G004665 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8652482.13.44e-45100.00hypothetical protein Csa_013341 [Cucumis sativus][more]
BLAST of CsGy1G004665 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LSE94.04e-31100.00TPT domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G025990 PE=4 SV... [more]
BLAST of CsGy1G004665 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy1G004665.1CsGy1G004665.1mRNA