CsGy1G004550 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy1G004550
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	Sm domain-containing protein
Location	Gy14Chr1: 2900763 .. 2901101 (-)
RNA-Seq Expression	CsGy1G004550
Synteny	CsGy1G004550

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAACAAGAATCAGGAGGATCCATGGTTCAGGATGGGAGCAATGTTGAGTCTAACCCAGAGAGTTTAGATCACATAGGAAAGGTGAGAAAGCTGCTGTTTCGTCGAATGCTCATAGGTATTAAAGATGGAAGGTTTTTCTTGGGAAACTTTTACTGCATTGACAAGCAAGGAAATATCATCCTTCAAGATGCAGTAGAGTATCGTAGCACTCGGCGTAGCTCACCTTCTCCAATGGAACAACGGTGCCTTGGTCTTATTCTTATACCCAACTCTTGCCGTGTATCCTGTCATGTGGATAGTACCATTGATGAACAATTGGCATTGCTATCAGTTTAG

mRNA sequence

ATGGAACAAGAATCAGGAGGATCCATGGTTCAGGATGGGAGCAATGTTGAGTCTAACCCAGAGAGTTTAGATCACATAGGAAAGGTGAGAAAGCTGCTGTTTCGTCGAATGCTCATAGGTATTAAAGATGGAAGGTTTTTCTTGGGAAACTTTTACTGCATTGACAAGCAAGGAAATATCATCCTTCAAGATGCAGTAGAGTATCGTAGCACTCGGCGTAGCTCACCTTCTCCAATGGAACAACGGTGCCTTGGTCTTATTCTTATACCCAACTCTTGCCGTGTATCCTGTCATGTGGATAGTACCATTGATGAACAATTGGCATTGCTATCAGTTTAG

Coding sequence (CDS)

ATGGAACAAGAATCAGGAGGATCCATGGTTCAGGATGGGAGCAATGTTGAGTCTAACCCAGAGAGTTTAGATCACATAGGAAAGGTGAGAAAGCTGCTGTTTCGTCGAATGCTCATAGGTATTAAAGATGGAAGGTTTTTCTTGGGAAACTTTTACTGCATTGACAAGCAAGGAAATATCATCCTTCAAGATGCAGTAGAGTATCGTAGCACTCGGCGTAGCTCACCTTCTCCAATGGAACAACGGTGCCTTGGTCTTATTCTTATACCCAACTCTTGCCGTGTATCCTGTCATGTGGATAGTACCATTGATGAACAATTGGCATTGCTATCAGTTTAG

Protein sequence

MEQESGGSMVQDGSNVESNPESLDHIGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV*

Homology

[Close]

BLAST of CsGy1G004550 vs. ExPASy Swiss-Prot
Match: Q55A45 (Small nuclear ribonucleoprotein-associated protein B OS=Dictyostelium discoideum OX=44689 GN=snrpb PE=3 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 1.8e-06
Identity = 29/83 (34.94%), Postives = 45/83 (54.22%), Query Frame = 0


Query: 28  KVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNIILQDAVEYRSTRRSSPSPMEQ-RCLGL 87
           K+ + +  RM + I+DGR  +G F   DK  N+++ DA E+R  R+      E+ R LG+
Sbjct: 9   KMLQYINYRMRVTIQDGRVIVGRFLAFDKHMNVVICDAEEFRRIRQKGKEDREEKRTLGM 68

Query: 88  ILIPNSCRVSCHVDSTIDEQLAL 110
           ILI     VS  V++   E+  L
Sbjct: 69  ILIRGETVVSMSVEAPPPEEAKL 91

[Close]

BLAST of CsGy1G004550 vs. ExPASy Swiss-Prot
Match: Q6GQ67 (N-alpha-acetyltransferase 38-A, NatC auxiliary subunit OS=Xenopus laevis OX=8355 GN=naa38-a PE=3 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 2.6e-05
Identity = 36/99 (36.36%), Postives = 49/99 (49.49%), Query Frame = 0


Query: 3   QESGGSMVQDGSNVESNPESLDHI-GKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNII 62
           +E+G S     S  +S+ E  D    K+  LL R M I + DGR  +G F C D+  N+I
Sbjct: 6   EENGCSRQSSPSAGDSDAEPGDTARHKLESLLNRNMRIEMTDGRSLIGCFLCTDRDCNVI 65

Query: 63  LQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD 101
           L  A E+     S P   E R LGL ++P    VS  V+
Sbjct: 66  LGSAQEFLRPSDSFP-VREPRVLGLAMVPGHHIVSIQVE 103

[Close]

BLAST of CsGy1G004550 vs. ExPASy Swiss-Prot
Match: A4IGZ4 (N-alpha-acetyltransferase 38, NatC auxiliary subunit OS=Xenopus tropicalis OX=8364 GN=naa38 PE=3 SV=2)

HSP 1 Score: 48.9 bits (115), Expect = 4.4e-05
Identity = 35/99 (35.35%), Postives = 49/99 (49.49%), Query Frame = 0


Query: 3   QESGGSMVQDGSNVESNPESLDHI-GKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNII 62
           +E+G S        +S+ E+ D    K+  LL R M I + DGR  +G F C D+  N+I
Sbjct: 6   EENGCSRQSSPGAGDSDAEAGDTARHKLESLLNRNMRIEMTDGRSLIGCFLCTDRDCNVI 65

Query: 63  LQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD 101
           L  A E+     S P   E R LGL ++P    VS  V+
Sbjct: 66  LGSAQEFLRPSDSFP-VREPRVLGLAMVPGHHIVSIQVE 103

[Close]

BLAST of CsGy1G004550 vs. ExPASy Swiss-Prot
Match: A2BIG9 (N-alpha-acetyltransferase 38, NatC auxiliary subunit OS=Danio rerio OX=7955 GN=naa38 PE=3 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 5.7e-05
Identity = 29/74 (39.19%), Postives = 40/74 (54.05%), Query Frame = 0


Query: 28  KVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLI 87
           K+  LL + M I + DGR  +G F C D+  N+IL  A E+  +   S S  E R LGL 
Sbjct: 27  KLENLLNKSMRIRMTDGRTLVGLFLCTDRDCNVILGSAQEFLKS-TDSLSQGEPRVLGLA 86

Query: 88  LIPNSCRVSCHVDS 102
           +IP    VS  V++
Sbjct: 87  MIPGHHVVSIEVET 99

[Close]

BLAST of CsGy1G004550 vs. ExPASy Swiss-Prot
Match: Q6NU60 (N-alpha-acetyltransferase 38-B, NatC auxiliary subunit OS=Xenopus laevis OX=8355 GN=naa38-b PE=3 SV=1)

HSP 1 Score: 46.2 bits (108), Expect = 2.8e-04
Identity = 33/87 (37.93%), Postives = 45/87 (51.72%), Query Frame = 0


Query: 14  SNVESNPESLDHIGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNIILQDAVEYRSTRR 73
           S+VES  ++  H  K+  LL R M I + DGR  +G F C D+  N+IL  A E+     
Sbjct: 21  SDVESG-DTARH--KLESLLNRNMRIQMTDGRSLIGCFLCTDRDCNVILGSAQEFLRP-S 80

Query: 74  SSPSPMEQRCLGLILIPNSCRVSCHVD 101
            S    E R LGL ++P    VS  V+
Sbjct: 81  DSFRIREPRVLGLAMVPGHHIVSIQVE 103

[Close]

BLAST of CsGy1G004550 vs. NCBI nr
Match: XP_011649337.1 (uncharacterized protein LOC101206200 [Cucumis sativus] >KGN63907.1 hypothetical protein Csa_014187 [Cucumis sativus])

HSP 1 Score: 226 bits (576), Expect = 1.53e-74
Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 0


Query: 1   MEQESGGSMVQDGSNVESNPESLDHIGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNI 60
           MEQESGGSMVQDGSNVESNPESLDHIGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNI
Sbjct: 1   MEQESGGSMVQDGSNVESNPESLDHIGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNI 60

Query: 61  ILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV 112
           ILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV
Sbjct: 61  ILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV 112

[Close]

BLAST of CsGy1G004550 vs. NCBI nr
Match: XP_008444477.1 (PREDICTED: uncharacterized protein LOC103487784 [Cucumis melo] >KAA0053997.1 Small nuclear ribonucleoprotein family protein isoform 2 [Cucumis melo var. makuwa] >TYK20682.1 Small nuclear ribonucleoprotein family protein isoform 2 [Cucumis melo var. makuwa])

HSP 1 Score: 217 bits (552), Expect = 7.00e-71
Identity = 109/112 (97.32%), Postives = 109/112 (97.32%), Query Frame = 0


Query: 1   MEQESGGSMVQDGSNVESNPESLDHIGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNI 60
           MEQESGGSMVQDGSN ESN ESLD IGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNI
Sbjct: 1   MEQESGGSMVQDGSNFESNSESLDCIGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNI 60

Query: 61  ILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV 112
           ILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV
Sbjct: 61  ILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV 112

[Close]

BLAST of CsGy1G004550 vs. NCBI nr
Match: XP_023520042.1 (uncharacterized protein LOC111783348 [Cucurbita pepo subsp. pepo] >KAG7019507.1 Small nuclear ribonucleoprotein-associated protein B, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 215 bits (547), Expect = 4.05e-70
Identity = 106/112 (94.64%), Postives = 110/112 (98.21%), Query Frame = 0


Query: 1   MEQESGGSMVQDGSNVESNPESLDHIGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNI 60
           MEQESGGSMVQ GSNVESNP+SLD +GKVRKLLFRRMLIGIKDGRFFLG+FYC+DKQGNI
Sbjct: 1   MEQESGGSMVQVGSNVESNPDSLDRVGKVRKLLFRRMLIGIKDGRFFLGSFYCMDKQGNI 60

Query: 61  ILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV 112
           ILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV
Sbjct: 61  ILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV 112

[Close]

BLAST of CsGy1G004550 vs. NCBI nr
Match: XP_022927243.1 (uncharacterized protein LOC111434149 [Cucurbita moschata])

HSP 1 Score: 213 bits (542), Expect = 2.35e-69
Identity = 105/112 (93.75%), Postives = 109/112 (97.32%), Query Frame = 0


Query: 1   MEQESGGSMVQDGSNVESNPESLDHIGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNI 60
           MEQESGGSMVQ G NVESNP+SLD +GKVRKLLFRRMLIGIKDGRFFLG+FYC+DKQGNI
Sbjct: 1   MEQESGGSMVQVGCNVESNPDSLDRVGKVRKLLFRRMLIGIKDGRFFLGSFYCMDKQGNI 60

Query: 61  ILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV 112
           ILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV
Sbjct: 61  ILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV 112

[Close]

BLAST of CsGy1G004550 vs. NCBI nr
Match: XP_038893823.1 (uncharacterized protein LOC120082644 [Benincasa hispida] >XP_038893824.1 uncharacterized protein LOC120082644 [Benincasa hispida] >XP_038893825.1 uncharacterized protein LOC120082644 [Benincasa hispida] >XP_038893826.1 uncharacterized protein LOC120082644 [Benincasa hispida] >XP_038893827.1 uncharacterized protein LOC120082644 [Benincasa hispida])

HSP 1 Score: 213 bits (541), Expect = 3.34e-69
Identity = 104/112 (92.86%), Postives = 109/112 (97.32%), Query Frame = 0


Query: 1   MEQESGGSMVQDGSNVESNPESLDHIGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNI 60
           MEQES GSMVQDGSNVESNPESLD +GKVR+LLFRRMLIGIKDGRFFLG+FYCIDKQGNI
Sbjct: 1   MEQESEGSMVQDGSNVESNPESLDRVGKVRRLLFRRMLIGIKDGRFFLGSFYCIDKQGNI 60

Query: 61  ILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV 112
           ILQDAVEYRSTR SSPSPMEQRCLGLILIPNSCRVSCH+DSTIDE+LALLSV
Sbjct: 61  ILQDAVEYRSTRHSSPSPMEQRCLGLILIPNSCRVSCHIDSTIDEKLALLSV 112

[Close]

BLAST of CsGy1G004550 vs. ExPASy TrEMBL
Match: A0A0A0LSZ5 (Sm domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G025880 PE=4 SV=1)

HSP 1 Score: 226 bits (576), Expect = 7.39e-75
Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 0


Query: 1   MEQESGGSMVQDGSNVESNPESLDHIGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNI 60
           MEQESGGSMVQDGSNVESNPESLDHIGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNI
Sbjct: 1   MEQESGGSMVQDGSNVESNPESLDHIGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNI 60

Query: 61  ILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV 112
           ILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV
Sbjct: 61  ILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV 112

[Close]

BLAST of CsGy1G004550 vs. ExPASy TrEMBL
Match: A0A5D3DAS2 (Small nuclear ribonucleoprotein family protein isoform 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold480G00700 PE=4 SV=1)

HSP 1 Score: 217 bits (552), Expect = 3.39e-71
Identity = 109/112 (97.32%), Postives = 109/112 (97.32%), Query Frame = 0


Query: 1   MEQESGGSMVQDGSNVESNPESLDHIGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNI 60
           MEQESGGSMVQDGSN ESN ESLD IGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNI
Sbjct: 1   MEQESGGSMVQDGSNFESNSESLDCIGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNI 60

Query: 61  ILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV 112
           ILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV
Sbjct: 61  ILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV 112

[Close]

BLAST of CsGy1G004550 vs. ExPASy TrEMBL
Match: A0A1S3BAH4 (uncharacterized protein LOC103487784 OS=Cucumis melo OX=3656 GN=LOC103487784 PE=4 SV=1)

HSP 1 Score: 217 bits (552), Expect = 3.39e-71
Identity = 109/112 (97.32%), Postives = 109/112 (97.32%), Query Frame = 0


Query: 1   MEQESGGSMVQDGSNVESNPESLDHIGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNI 60
           MEQESGGSMVQDGSN ESN ESLD IGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNI
Sbjct: 1   MEQESGGSMVQDGSNFESNSESLDCIGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNI 60

Query: 61  ILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV 112
           ILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV
Sbjct: 61  ILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV 112

[Close]

BLAST of CsGy1G004550 vs. ExPASy TrEMBL
Match: A0A6J1EKG3 (uncharacterized protein LOC111434149 OS=Cucurbita moschata OX=3662 GN=LOC111434149 PE=4 SV=1)

HSP 1 Score: 213 bits (542), Expect = 1.14e-69
Identity = 105/112 (93.75%), Postives = 109/112 (97.32%), Query Frame = 0


Query: 1   MEQESGGSMVQDGSNVESNPESLDHIGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNI 60
           MEQESGGSMVQ G NVESNP+SLD +GKVRKLLFRRMLIGIKDGRFFLG+FYC+DKQGNI
Sbjct: 1   MEQESGGSMVQVGCNVESNPDSLDRVGKVRKLLFRRMLIGIKDGRFFLGSFYCMDKQGNI 60

Query: 61  ILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV 112
           ILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV
Sbjct: 61  ILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV 112

[Close]

BLAST of CsGy1G004550 vs. ExPASy TrEMBL
Match: A0A6J1KMW6 (uncharacterized protein LOC111495614 OS=Cucurbita maxima OX=3661 GN=LOC111495614 PE=4 SV=1)

HSP 1 Score: 210 bits (534), Expect = 1.89e-68
Identity = 103/112 (91.96%), Postives = 109/112 (97.32%), Query Frame = 0


Query: 1   MEQESGGSMVQDGSNVESNPESLDHIGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNI 60
           M+QESGGSMVQ GSNVESNP+SLD +GKVRKLLFRRML+GIKDGRFFLG+FYC+DKQGNI
Sbjct: 1   MDQESGGSMVQVGSNVESNPDSLDRVGKVRKLLFRRMLLGIKDGRFFLGSFYCMDKQGNI 60

Query: 61  ILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV 112
           ILQDAVEYRST RSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV
Sbjct: 61  ILQDAVEYRSTWRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV 112

[Close]

BLAST of CsGy1G004550 vs. TAIR 10
Match: AT4G18372.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 154.1 bits (388), Expect = 6.8e-38
Identity = 76/112 (67.86%), Postives = 89/112 (79.46%), Query Frame = 0


Query: 1   MEQESGGSMVQDGSNVESNPESLDHIGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNI 60
           MEQ +  S     S  E +    D I ++RKLLFR+ML+GIKDGRFFLGNF+CIDKQGNI
Sbjct: 1   MEQAAERSSTIVASTSEGS--DFDPISRLRKLLFRQMLVGIKDGRFFLGNFHCIDKQGNI 60

Query: 61  ILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV 113
           ILQD VEYRS RRSSPSP EQRCLG+ILIP+SCR SCHVD +IDEQL+L+ +
Sbjct: 61  ILQDTVEYRSIRRSSPSPTEQRCLGMILIPSSCRTSCHVDCSIDEQLSLIQL 110

The following BLAST results are available for this feature:

BLAST of CsGy1G004550 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q55A45	1.8e-06	34.94	Small nuclear ribonucleoprotein-associated protein B OS=Dictyostelium discoideum...	[more]
Q6GQ67	2.6e-05	36.36	N-alpha-acetyltransferase 38-A, NatC auxiliary subunit OS=Xenopus laevis OX=8355...	[more]
A4IGZ4	4.4e-05	35.35	N-alpha-acetyltransferase 38, NatC auxiliary subunit OS=Xenopus tropicalis OX=83...	[more]
A2BIG9	5.7e-05	39.19	N-alpha-acetyltransferase 38, NatC auxiliary subunit OS=Danio rerio OX=7955 GN=n...	[more]
Q6NU60	2.8e-04	37.93	N-alpha-acetyltransferase 38-B, NatC auxiliary subunit OS=Xenopus laevis OX=8355...	[more]

BLAST of CsGy1G004550 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011649337.1	1.53e-74	100.00	uncharacterized protein LOC101206200 [Cucumis sativus] >KGN63907.1 hypothetical ...	[more]
XP_008444477.1	7.00e-71	97.32	PREDICTED: uncharacterized protein LOC103487784 [Cucumis melo] >KAA0053997.1 Sma...	[more]
XP_023520042.1	4.05e-70	94.64	uncharacterized protein LOC111783348 [Cucurbita pepo subsp. pepo] >KAG7019507.1 ...	[more]
XP_022927243.1	2.35e-69	93.75	uncharacterized protein LOC111434149 [Cucurbita moschata]	[more]
XP_038893823.1	3.34e-69	92.86	uncharacterized protein LOC120082644 [Benincasa hispida] >XP_038893824.1 unchara...	[more]

BLAST of CsGy1G004550 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LSZ5	7.39e-75	100.00	Sm domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G025880 PE=4 SV=...	[more]
A0A5D3DAS2	3.39e-71	97.32	Small nuclear ribonucleoprotein family protein isoform 2 OS=Cucumis melo var. ma...	[more]
A0A1S3BAH4	3.39e-71	97.32	uncharacterized protein LOC103487784 OS=Cucumis melo OX=3656 GN=LOC103487784 PE=...	[more]
A0A6J1EKG3	1.14e-69	93.75	uncharacterized protein LOC111434149 OS=Cucurbita moschata OX=3662 GN=LOC1114341...	[more]
A0A6J1KMW6	1.89e-68	91.96	uncharacterized protein LOC111495614 OS=Cucurbita maxima OX=3661 GN=LOC111495614...	[more]

BLAST of CsGy1G004550 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G18372.1	6.8e-38	67.86	Small nuclear ribonucleoprotein family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001163	LSM domain, eukaryotic/archaea-type	PFAM	PF01423	LSM	coord: 30..89 e-value: 1.3E-7 score: 31.2
None	No IPR available	GENE3D	2.30.30.100		coord: 27..104 e-value: 3.9E-17 score: 63.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..22
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..21
None	No IPR available	PANTHER	PTHR10701	SMALL NUCLEAR RIBONUCLEOPROTEIN-ASSOCIATED PROTEIN B AND N	coord: 14..111
IPR034110	LSM domain containing 1	PANTHER	PTHR10701:SF5	FI06540P	coord: 14..111
IPR034110	LSM domain containing 1	CDD	cd06168	LSMD1	coord: 28..100 e-value: 1.41206E-26 score: 91.8497
IPR010920	LSM domain superfamily	SUPERFAMILY	50182	Sm-like ribonucleoproteins	coord: 25..101

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy1G004550.2	CsGy1G004550.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0031417	NatC complex