CsGy1G002710 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy1G002710
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	LYR motif-containing protein 4
Location	Gy14Chr1: 1690290 .. 1690624 (+)
RNA-Seq Expression	CsGy1G002710
Synteny	CsGy1G002710

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGTCCCCAACGAGATCGGAGGCCCTTTCGCTTCTTCGCTCTCTGATCCGTACAGCCCGTCACTTCTCCGATTACAACATCAGAGAGTACGCCAAACGACGCGCGGTCGATGGCTTCCGCCATAACCGAAACCTTTCCGATCCTCCATCCATTTCTTCCGCCTATGCCGATGGCAAGGCTCAGCTTGAAGTTGCTAAAAGACAGTCCGCCGTTTACTCCCTCTATGGGCCGAAGGTAAAGAGCATCATGGAGGCTCATCGCATAAACTGAATACGGAAGCTCTTTTTCCTTAATTTATTGTAATTCTAATTCTATTGTGATAGATTTCGTGA

mRNA sequence

ATGGCGTCCCCAACGAGATCGGAGGCCCTTTCGCTTCTTCGCTCTCTGATCCGTACAGCCCGTCACTTCTCCGATTACAACATCAGAGAGTACGCCAAACGACGCGCGGTCGATGGCTTCCGCCATAACCGAAACCTTTCCGATCCTCCATCCATTTCTTCCGCCTATGCCGATGGCAAGGCTCAGCTTGAAGTTGCTAAAAGACAGTCCGCCGTTTACTCCCTCTATGGGCCGAAGATTTCGTGA

Coding sequence (CDS)

ATGGCGTCCCCAACGAGATCGGAGGCCCTTTCGCTTCTTCGCTCTCTGATCCGTACAGCCCGTCACTTCTCCGATTACAACATCAGAGAGTACGCCAAACGACGCGCGGTCGATGGCTTCCGCCATAACCGAAACCTTTCCGATCCTCCATCCATTTCTTCCGCCTATGCCGATGGCAAGGCTCAGCTTGAAGTTGCTAAAAGACAGTCCGCCGTTTACTCCCTCTATGGGCCGAAGATTTCGTGA

Protein sequence

MASPTRSEALSLLRSLIRTARHFSDYNIREYAKRRAVDGFRHNRNLSDPPSISSAYADGKAQLEVAKRQSAVYSLYGPKIS*

Homology

[Close]

BLAST of CsGy1G002710 vs. ExPASy Swiss-Prot
Match: Q8K215 (LYR motif-containing protein 4 OS=Mus musculus OX=10090 GN=Lyrm4 PE=1 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 3.3e-10
Identity = 32/76 (42.11%), Postives = 47/76 (61.84%), Query Frame = 0


Query: 1  MASPTRSEALSLLRSLIRTARHFSDYNIREYAKRRAVDGFRHNRNLSDPPSISSAYADGK 60
          MA+ +R++ L L R+++R ++HFS YN R YA RR  D FR N+N+ DP  I +     K
Sbjct: 1  MAASSRAQVLDLYRAMMRESKHFSAYNYRMYAVRRIRDAFRENKNVKDPVEIQALVNKAK 60

Query: 61 AQLEVAKRQSAVYSLY 77
            LE+ +RQ  +  LY
Sbjct: 61 RDLEIIRRQVHIGQLY 76

[Close]

BLAST of CsGy1G002710 vs. ExPASy Swiss-Prot
Match: Q6Q560 (Protein ISD11 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=ISD11 PE=1 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 1.2e-07
Identity = 28/74 (37.84%), Postives = 41/74 (55.41%), Query Frame = 0


Query: 3  SPTRSEALSLLRSLIRTARHFSDYNIREYAKRRAVDGFRHNRNLSDPPSISSAYADGKAQ 62
          +PTR + LSL +  I+ A  F++YN REY   +    FR N N  DP  + + + + K  
Sbjct: 6  APTRRQVLSLYKEFIKNANQFNNYNFREYFLSKTRTTFRKNMNQQDPKVLMNLFKEAKND 65

Query: 63 LEVAKRQSAVYSLY 77
          L V KRQS +  +Y
Sbjct: 66 LGVLKRQSVISQMY 79

[Close]

BLAST of CsGy1G002710 vs. ExPASy Swiss-Prot
Match: B8JLQ0 (LYR motif-containing protein 4 OS=Danio rerio OX=7955 GN=lyrm4 PE=3 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 1.5e-07
Identity = 29/76 (38.16%), Postives = 45/76 (59.21%), Query Frame = 0


Query: 1  MASPTRSEALSLLRSLIRTARHFSDYNIREYAKRRAVDGFRHNRNLSDPPSISSAYADGK 60
          MAS +R++ +SL R L++ ++ F  YN R YA RR  DGFR N ++ +P ++       +
Sbjct: 1  MASCSRAQVISLYRMLMKESKKFPSYNYRTYALRRVKDGFRENLHVDNPRTLDLLINQAR 60

Query: 61 AQLEVAKRQSAVYSLY 77
            L V KRQ ++  LY
Sbjct: 61 ENLAVIKRQVSIGHLY 76

[Close]

BLAST of CsGy1G002710 vs. ExPASy Swiss-Prot
Match: Q54FN9 (LYR motif-containing protein 4 OS=Dictyostelium discoideum OX=44689 GN=lyrm4 PE=3 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 7.5e-07
Identity = 30/71 (42.25%), Postives = 40/71 (56.34%), Query Frame = 0


Query: 6  RSEALSLLRSLIRTARHFSDYNIREYAKRRAVDGFRHNRNLSDPPSISSAYADGKAQLEV 65
          +S  L L RSL+R ++ FS YN REY+ RR   GFR N+N  D         D    LE+
Sbjct: 4  KSVVLHLYRSLVRESKKFSSYNFREYSLRRVSVGFRENKN-KDQNETKELIQDALKNLEM 63

Query: 66 AKRQSAVYSLY 77
           KRQ+ + S+Y
Sbjct: 64 VKRQAFINSMY 73

[Close]

BLAST of CsGy1G002710 vs. ExPASy Swiss-Prot
Match: B5X5U9 (LYR motif-containing protein 4A OS=Salmo salar OX=8030 GN=lyrm4a PE=3 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 1.3e-06
Identity = 26/76 (34.21%), Postives = 44/76 (57.89%), Query Frame = 0


Query: 1  MASPTRSEALSLLRSLIRTARHFSDYNIREYAKRRAVDGFRHNRNLSDPPSISSAYADGK 60
          MA+ +R++ +SL R LI+ ++ F  YN R YA RR  D FR N ++ +P ++       +
Sbjct: 1  MAACSRTQVISLYRMLIKESKKFPSYNYRTYALRRVKDSFRENLHVDNPKTLDMLLNQAR 60

Query: 61 AQLEVAKRQSAVYSLY 77
            L V +RQ ++  +Y
Sbjct: 61 ENLAVIRRQVSIGQMY 76

[Close]

BLAST of CsGy1G002710 vs. NCBI nr
Match: XP_011660289.1 (LYR motif-containing protein 4 [Cucumis sativus])

HSP 1 Score: 157 bits (396), Expect = 6.12e-48
Identity = 79/80 (98.75%), Postives = 80/80 (100.00%), Query Frame = 0


Query: 1  MASPTRSEALSLLRSLIRTARHFSDYNIREYAKRRAVDGFRHNRNLSDPPSISSAYADGK 60
          MASPTRSEALSLLRSLIRTARHFSDYNIREYAKRRAVDGFRHNRNLSDPPSISSAYADGK
Sbjct: 1  MASPTRSEALSLLRSLIRTARHFSDYNIREYAKRRAVDGFRHNRNLSDPPSISSAYADGK 60

Query: 61 AQLEVAKRQSAVYSLYGPKI 80
          AQLEVAKRQSAVYSLYGPK+
Sbjct: 61 AQLEVAKRQSAVYSLYGPKV 80

[Close]

BLAST of CsGy1G002710 vs. NCBI nr
Match: XP_038879775.1 (LYR motif-containing protein 4-like [Benincasa hispida])

HSP 1 Score: 147 bits (372), Expect = 2.81e-44
Identity = 73/80 (91.25%), Postives = 76/80 (95.00%), Query Frame = 0


Query: 1  MASPTRSEALSLLRSLIRTARHFSDYNIREYAKRRAVDGFRHNRNLSDPPSISSAYADGK 60
          M +PTRSEALSLLRS +RTARHF DYNIREYAKRRAVDGFRHNRNLSDPPSISSAYADGK
Sbjct: 1  MVAPTRSEALSLLRSFLRTARHFCDYNIREYAKRRAVDGFRHNRNLSDPPSISSAYADGK 60

Query: 61 AQLEVAKRQSAVYSLYGPKI 80
          AQLEVAKRQSAVYSLY PK+
Sbjct: 61 AQLEVAKRQSAVYSLYAPKV 80

[Close]

BLAST of CsGy1G002710 vs. NCBI nr
Match: XP_008453246.1 (PREDICTED: LYR motif-containing protein 4 [Cucumis melo] >KAA0057977.1 LYR motif-containing protein 4 [Cucumis melo var. makuwa])

HSP 1 Score: 142 bits (358), Expect = 3.84e-42
Identity = 71/80 (88.75%), Postives = 75/80 (93.75%), Query Frame = 0


Query: 1  MASPTRSEALSLLRSLIRTARHFSDYNIREYAKRRAVDGFRHNRNLSDPPSISSAYADGK 60
          MA+PTRSEALSLLRSLIRT+R F DYNIREYAKRR VDGFRHNRNLSDP SISSAYADGK
Sbjct: 1  MAAPTRSEALSLLRSLIRTSRQFCDYNIREYAKRRVVDGFRHNRNLSDPSSISSAYADGK 60

Query: 61 AQLEVAKRQSAVYSLYGPKI 80
          AQLEVAKRQSA+YSLY PK+
Sbjct: 61 AQLEVAKRQSAIYSLYAPKV 80

[Close]

BLAST of CsGy1G002710 vs. NCBI nr
Match: XP_022134602.1 (LYR motif-containing protein 4-like [Momordica charantia])

HSP 1 Score: 139 bits (350), Expect = 6.38e-41
Identity = 67/80 (83.75%), Postives = 75/80 (93.75%), Query Frame = 0


Query: 1  MASPTRSEALSLLRSLIRTARHFSDYNIREYAKRRAVDGFRHNRNLSDPPSISSAYADGK 60
          MA+PTR+EALSLLRSL+RTARHF DYN+REYAKRRAVDGFRHNRNLSDP SISSAYADG+
Sbjct: 1  MATPTRTEALSLLRSLLRTARHFCDYNVREYAKRRAVDGFRHNRNLSDPSSISSAYADGR 60

Query: 61 AQLEVAKRQSAVYSLYGPKI 80
          AQLEVA+RQS VYS + PK+
Sbjct: 61 AQLEVARRQSTVYSFFAPKV 80

[Close]

BLAST of CsGy1G002710 vs. NCBI nr
Match: XP_022932898.1 (LYR motif-containing protein 4 [Cucurbita moschata] >XP_022973088.1 LYR motif-containing protein 4 [Cucurbita maxima] >XP_023531294.1 LYR motif-containing protein 4 [Cucurbita pepo subsp. pepo] >KAG7021536.1 LYR motif-containing protein 4, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 139 bits (349), Expect = 9.06e-41
Identity = 69/80 (86.25%), Postives = 74/80 (92.50%), Query Frame = 0


Query: 1  MASPTRSEALSLLRSLIRTARHFSDYNIREYAKRRAVDGFRHNRNLSDPPSISSAYADGK 60
          MA+PTRSE+LSLLRSL+RTARHF DYNIREYAKRRAVDGFRHNRNLSDP SI  AYADGK
Sbjct: 1  MATPTRSESLSLLRSLLRTARHFCDYNIREYAKRRAVDGFRHNRNLSDPSSIVVAYADGK 60

Query: 61 AQLEVAKRQSAVYSLYGPKI 80
          AQLEVAKRQS VYSL+ PK+
Sbjct: 61 AQLEVAKRQSTVYSLFSPKV 80

[Close]

BLAST of CsGy1G002710 vs. ExPASy TrEMBL
Match: A0A0A0LPH2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G012090 PE=4 SV=1)

HSP 1 Score: 157 bits (396), Expect = 2.96e-48
Identity = 79/80 (98.75%), Postives = 80/80 (100.00%), Query Frame = 0


Query: 1  MASPTRSEALSLLRSLIRTARHFSDYNIREYAKRRAVDGFRHNRNLSDPPSISSAYADGK 60
          MASPTRSEALSLLRSLIRTARHFSDYNIREYAKRRAVDGFRHNRNLSDPPSISSAYADGK
Sbjct: 1  MASPTRSEALSLLRSLIRTARHFSDYNIREYAKRRAVDGFRHNRNLSDPPSISSAYADGK 60

Query: 61 AQLEVAKRQSAVYSLYGPKI 80
          AQLEVAKRQSAVYSLYGPK+
Sbjct: 61 AQLEVAKRQSAVYSLYGPKV 80

[Close]

BLAST of CsGy1G002710 vs. ExPASy TrEMBL
Match: A0A5A7UTC8 (LYR motif-containing protein 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G002810 PE=4 SV=1)

HSP 1 Score: 142 bits (358), Expect = 1.86e-42
Identity = 71/80 (88.75%), Postives = 75/80 (93.75%), Query Frame = 0


Query: 1  MASPTRSEALSLLRSLIRTARHFSDYNIREYAKRRAVDGFRHNRNLSDPPSISSAYADGK 60
          MA+PTRSEALSLLRSLIRT+R F DYNIREYAKRR VDGFRHNRNLSDP SISSAYADGK
Sbjct: 1  MAAPTRSEALSLLRSLIRTSRQFCDYNIREYAKRRVVDGFRHNRNLSDPSSISSAYADGK 60

Query: 61 AQLEVAKRQSAVYSLYGPKI 80
          AQLEVAKRQSA+YSLY PK+
Sbjct: 61 AQLEVAKRQSAIYSLYAPKV 80

[Close]

BLAST of CsGy1G002710 vs. ExPASy TrEMBL
Match: A0A1S3BV74 (LYR motif-containing protein 4 OS=Cucumis melo OX=3656 GN=LOC103494022 PE=4 SV=1)

HSP 1 Score: 142 bits (358), Expect = 1.86e-42
Identity = 71/80 (88.75%), Postives = 75/80 (93.75%), Query Frame = 0


Query: 1  MASPTRSEALSLLRSLIRTARHFSDYNIREYAKRRAVDGFRHNRNLSDPPSISSAYADGK 60
          MA+PTRSEALSLLRSLIRT+R F DYNIREYAKRR VDGFRHNRNLSDP SISSAYADGK
Sbjct: 1  MAAPTRSEALSLLRSLIRTSRQFCDYNIREYAKRRVVDGFRHNRNLSDPSSISSAYADGK 60

Query: 61 AQLEVAKRQSAVYSLYGPKI 80
          AQLEVAKRQSA+YSLY PK+
Sbjct: 61 AQLEVAKRQSAIYSLYAPKV 80

[Close]

BLAST of CsGy1G002710 vs. ExPASy TrEMBL
Match: A0A6J1C021 (LYR motif-containing protein 4-like OS=Momordica charantia OX=3673 GN=LOC111006829 PE=4 SV=1)

HSP 1 Score: 139 bits (350), Expect = 3.09e-41
Identity = 67/80 (83.75%), Postives = 75/80 (93.75%), Query Frame = 0


Query: 1  MASPTRSEALSLLRSLIRTARHFSDYNIREYAKRRAVDGFRHNRNLSDPPSISSAYADGK 60
          MA+PTR+EALSLLRSL+RTARHF DYN+REYAKRRAVDGFRHNRNLSDP SISSAYADG+
Sbjct: 1  MATPTRTEALSLLRSLLRTARHFCDYNVREYAKRRAVDGFRHNRNLSDPSSISSAYADGR 60

Query: 61 AQLEVAKRQSAVYSLYGPKI 80
          AQLEVA+RQS VYS + PK+
Sbjct: 61 AQLEVARRQSTVYSFFAPKV 80

[Close]

BLAST of CsGy1G002710 vs. ExPASy TrEMBL
Match: A0A6J1IC29 (LYR motif-containing protein 4 OS=Cucurbita maxima OX=3661 GN=LOC111471615 PE=4 SV=1)

HSP 1 Score: 139 bits (349), Expect = 4.39e-41
Identity = 69/80 (86.25%), Postives = 74/80 (92.50%), Query Frame = 0


Query: 1  MASPTRSEALSLLRSLIRTARHFSDYNIREYAKRRAVDGFRHNRNLSDPPSISSAYADGK 60
          MA+PTRSE+LSLLRSL+RTARHF DYNIREYAKRRAVDGFRHNRNLSDP SI  AYADGK
Sbjct: 1  MATPTRSESLSLLRSLLRTARHFCDYNIREYAKRRAVDGFRHNRNLSDPSSIVVAYADGK 60

Query: 61 AQLEVAKRQSAVYSLYGPKI 80
          AQLEVAKRQS VYSL+ PK+
Sbjct: 61 AQLEVAKRQSTVYSLFSPKV 80

[Close]

BLAST of CsGy1G002710 vs. TAIR 10
Match: AT5G61220.1 (LYR family of Fe/S cluster biogenesis protein )

HSP 1 Score: 87.8 bits (216), Expect = 4.4e-18
Identity = 43/73 (58.90%), Postives = 53/73 (72.60%), Query Frame = 0


Query: 7  SEALSLLRSLIRTARHFSDYNIREYAKRRAVDGFRHNRNLSDPPSISSAYADGKAQLEVA 66
          SE LSL R+L+R  R F DYNIREY+KRR +DGFR N+NL+DP  ++ AYA+ K QL VA
Sbjct: 5  SEVLSLCRALLRAGRQFPDYNIREYSKRRTLDGFRMNKNLTDPSKVTEAYAEAKKQLFVA 64

Query: 67 KRQSAVYSLYGPK 80
          +R   VY  Y PK
Sbjct: 65 ERVLKVYLAYPPK 77

The following BLAST results are available for this feature:

BLAST of CsGy1G002710 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8K215	3.3e-10	42.11	LYR motif-containing protein 4 OS=Mus musculus OX=10090 GN=Lyrm4 PE=1 SV=1	[more]
Q6Q560	1.2e-07	37.84	Protein ISD11 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292...	[more]
B8JLQ0	1.5e-07	38.16	LYR motif-containing protein 4 OS=Danio rerio OX=7955 GN=lyrm4 PE=3 SV=1	[more]
Q54FN9	7.5e-07	42.25	LYR motif-containing protein 4 OS=Dictyostelium discoideum OX=44689 GN=lyrm4 PE=...	[more]
B5X5U9	1.3e-06	34.21	LYR motif-containing protein 4A OS=Salmo salar OX=8030 GN=lyrm4a PE=3 SV=1	[more]

BLAST of CsGy1G002710 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011660289.1	6.12e-48	98.75	LYR motif-containing protein 4 [Cucumis sativus]	[more]
XP_038879775.1	2.81e-44	91.25	LYR motif-containing protein 4-like [Benincasa hispida]	[more]
XP_008453246.1	3.84e-42	88.75	PREDICTED: LYR motif-containing protein 4 [Cucumis melo] >KAA0057977.1 LYR motif...	[more]
XP_022134602.1	6.38e-41	83.75	LYR motif-containing protein 4-like [Momordica charantia]	[more]
XP_022932898.1	9.06e-41	86.25	LYR motif-containing protein 4 [Cucurbita moschata] >XP_022973088.1 LYR motif-co...	[more]

BLAST of CsGy1G002710 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LPH2	2.96e-48	98.75	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G012090 PE=4 SV=1	[more]
A0A5A7UTC8	1.86e-42	88.75	LYR motif-containing protein 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s...	[more]
A0A1S3BV74	1.86e-42	88.75	LYR motif-containing protein 4 OS=Cucumis melo OX=3656 GN=LOC103494022 PE=4 SV=1	[more]
A0A6J1C021	3.09e-41	83.75	LYR motif-containing protein 4-like OS=Momordica charantia OX=3673 GN=LOC1110068...	[more]
A0A6J1IC29	4.39e-41	86.25	LYR motif-containing protein 4 OS=Cucurbita maxima OX=3661 GN=LOC111471615 PE=4 ...	[more]

BLAST of CsGy1G002710 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G61220.1	4.4e-18	58.90	LYR family of Fe/S cluster biogenesis protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008011	Complex 1 LYR protein	PFAM	PF05347	Complex1_LYR	coord: 8..64 e-value: 9.3E-18 score: 64.0
None	No IPR available	PANTHER	PTHR47158	OS08G0239000 PROTEIN	coord: 1..80
None	No IPR available	PANTHER	PTHR47158:SF1	OS08G0239000 PROTEIN	coord: 1..80
None	No IPR available	CDD	cd20264	Complex1_LYR_LYRM4	coord: 8..76 e-value: 2.06296E-28 score: 94.8937

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy1G002710.1	CsGy1G002710.1	mRNA