CsGy1G001660 (gene) Cucumber (Gy14) v2.1

Overview
NameCsGy1G001660
Typegene
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description39S ribosomal protein L47, mitochondrial
LocationGy14Chr1: 1075045 .. 1078352 (-)
RNA-Seq ExpressionCsGy1G001660
SyntenyCsGy1G001660
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACAAATTTCAAATTTAGGTAAAAACTGATTAATTTTCCTAATAAAAAGCTGTCGGCGTCTCACCCTCTCGTCTCAAGTCCCTCACGCTTCGTAGACTTCCGTCGCCACTGCTTCCTCGTTCGCCGCGGGAGCTCAGATCGTTGCAGCTTGGCGGAGACAGGCCTTGTGTGAGCTTACCTGCTCCTTCTGTGTTCAGCCCGTCGTTCGGTTCAGTAGTACGACCACTACCTGCAGAATTAGAGGTGAGTGACCTAGTTTTCGTGTTGTTTTGGGGTCGAAGTAGTTTTTCTTTTTTTGTTCTTCAGCGTCTGTTACTGATGGTTAAGCCTCTGATGCTTTTTGGTTGATGATTAAACCCCTTTCCAGTTTGTGATTACTGATTACTGATTACGGACTTATTTGCTCTTCTCTACTGAGATTAGATATGCATTTTTTATTTTATGCGAGATTCATCGTTGCATAACTGTAACTTTTAGGACCTTTGTGTCGTTTATTCGAAATGGAACGATCTGAATTTGTATCGTTATTTTTCTTGTTCCATTTCGCTCATCCTTTTGGTGATTCTTTTGGTAGAAAAAATGAAGGTCGAATAATTTGTGAAATTATTTTCTCAGAAAGAGCAGGAGAGAGTAATTGGAATGTGTGAGAGAGCTGGGTCCAGTAGGATATGTTGTTTTGTGGTTATTAGTTCTCTTGGTCTCTATGTATCAATCTTAGATTCGGGTCATGATAATTAGTTGCATTGCATGCATGACTTGTTACTTGTTAAATGAGAGGCGGGGCTTAAGAGCTAGTGTTGAGACTCTTGTTTTGGTCACTCTATTTCAAATCAATCGATTATAAGGTTTTTATTGGAAATGAGCAAAACTAAAACAATGTTTGATAACCATTTTGGTTTTTCCAAATCAAACCTGTAACATTTCTTTCATGAATTGGTTTCTGTATTTTGTTTTCTAGATTTTAATAGTGTTTTACAAAATCAAAACGAAAATTTCAAAAGTTTACATTGGACCACAACTAAGAAATTGTGAGAAAACAAGTACAATGTTCAAAAACCAAATGGATATCAGGTGAGGCCTAAACTTGTACACAATTTCTTTAATGGTCTAGAATCATAAATTTATGGCTGGCATTTCATCTTCAGATTATTTACTTTTGTTGTTTTTGAAAAGTATTTAGTCTCACAGTTTCTAGTCTTTCAATTCAAGCAGCATTAGTGCAGCCATGTTTTTGACACGAGTGTTTGGGAGAACATTTCTAGCTGCTGCTAGATCAGAAACTTCTTCTGCCACAGCTGCTGCTGCTGCCACAGCTAGGACGGGCTATAACCCGCTTGAGGAGTTTTTCGAGGCAGATAGAAGTCCAGATGATGGCAAACCTGTTGTATATGGTATACTCTTACATTGCCGTGGAACTTTTGGTCTTCTTTAACAACCCATAAATTTGTATATTGGTTCATTCATTCTGTAGAATTTCAAGGTACTGTTCTTCTGGGTACGCAAATTTATACCCCGTATCTGGTCTGATGTAGTAAAATTTGAAACTTGAAGTCATGGAGGGTTCCCCAACTCATGAAAATGAATACAAATTGATCAGATACAGCCACTGCACTAAAAGAAAATACCCTCATTGTCAGGCATAGGGTTGGAATGCATCTTTTAAGATAACAAAGATTTGAATTGGTTAGAGTACTTAAATTGGTCACTGTGGAATATGGATTCTTCTGCTTCATTGATAAAATATCACAAATGTCATATGTTTTATATTTCTGAATTTCATACGTCATAATAGGTGAAATGTGTAATTACCAATACATTAGTTGTAGACCTACGAAGTCTTAACTCTTTGGATACACCAAATTACACCAAAAAAATATAGATTTAATTTTATTATAGTTTCACTAGTGTAGGTTCTTCCTTCCTCGATTACTTTGATAACGTGGCTGTTTATAAAGATACCTGAGCGGTTGCAAGGTGAAGATAGGATCAAGGACATTAAATAGGTGTAGGCAGCCATAATTATGTCTGGTCTATCTTCTATACCTGTCAGTGCTTTCTTATTGCTGAAATGGTGTTATGTGTGCCATGTGATCATTCCTTTAAAGTTTTATGTGCGCTTTTGGGCTTTTTAGAAATTGTTCTCTTTATCGCTGCACATGCGATGCAAATTTTATGTTAATGTTTTAGCATGGTATCTGTTTGTGCGGTGCGATTAATCTTTTTGAACAAATTTAGCTTGCTCGTTGTCAAGAGGCTATTTTGTTTAAGGATTTTAGGTGCATATTTTTCTCATATAAGTACAGACTTGATCTTTGTATAAAGTTGCTACTTCTTAGGAATAAAGAAGTCTCTTGAAAAATCCAAAATCGAAGTATGATCTATGATGTAATAGAAAATTTTATGAGATTTGAACACTCTCCTGGTGGCCACCCACCTATACTATAAAGGATAGGAATATCCTTAAAGTTGTTTGACTCTAACTTTATAGTCTTAGTCTCTTAGACAGTTATGTGAGACCCAAATACTCATCTTCCCAGTTTGGTGACCACCCCATATGAGATGATATTAGTATTCAAAGAATTTTGCAATATATAATTCTGTAGGATGATTTCGTTGACATACATATTGTTCTGGATGCTTGCAAATACAAAAAGTCTGTGTTGCCATGATTGAAATCTATATAATAAGCAGCCGTGGGCCAAAGGACAAAACTCATCTTTTTTGCAAAATGGAAGGAGAGAAAAGCCCCTTCGTTAGAAGTTAGAAAAAAAATCTTGTAGAATTTTATGGCTGGAATTTTTCGCTTTGTTCAAAATACCTTATTGAGATTCTCATTGTAATTATATACTGTTAGGTCGAAGTTGGAAGGCTTCGGAACTACGGCTCAAGTCTTGGGACGATCTTAATAAACTATGGTATGTTCTTTTGAAGGAGAAGAATATGTTGATGACACAACGCCAGATGCTGAATGCACAAAATCTAAAGTTTCCTAATCCAGAACGCATTCCCAAGGTAGAAGTAGACACAGATTTAGTATTATTTTCAAATTGTAAATATAAGTTCAATTTGCTTTCTCTTTTATATTGGATCTGTTTCCTTCTCCTCCTTCAGTCGTGTAATCTTAAGCCTGACAATGGCTCTCCTTCCACTACTTTTCTATTCTAATGTTAATGCCCGTTGTTGATACTTGTAATTTAGGTGAGGAAGTCAATGTGTCGAATCAAGCACGTACTTACCGAGAGAGCCATCGACGAACCAGATCCTCGGAGATCTGCAGAGATGAAGAGGATGATAAACGCTCTGTGA

mRNA sequence

ATGACAAATTTCAAATTTAGACTTCCGTCGCCACTGCTTCCTCGTTCGCCGCGGGAGCTCAGATCGTTGCAGCTTGGCGGAGACAGGCCTTGTGTGAGCTTACCTGCTCCTTCTGTGTTCAGCCCGTCGTTCGGTTCAGTAGTACGACCACTACCTGCAGAATTAGAGCGTCTGTTACTGATGAAAGAGCAGGAGAGAGTAATTGGAATGTGTGAGAGAGCTGGGTCCAGTAGGATATGTTGTTTTGTGTCTTTCAATTCAAGCAGCATTAGTGCAGCCATGTTTTTGACACGAGTGTTTGGGAGAACATTTCTAGCTGCTGCTAGATCAGAAACTTCTTCTGCCACAGCTGCTGCTGCTGCCACAGCTAGGACGGGCTATAACCCGCTTGAGGAGTTTTTCGAGGCAGATAGAAGTCCAGATGATGGCAAACCTGTTGTATATGGTCGAAGTTGGAAGGCTTCGGAACTACGGCTCAAGTCTTGGGACGATCTTAATAAACTATGGTATGTTCTTTTGAAGGAGAAGAATATGTTGATGACACAACGCCAGATGCTGAATGCACAAAATCTAAAGTTTCCTAATCCAGAACGCATTCCCAAGGTGAGGAAGTCAATGTGTCGAATCAAGCACGTACTTACCGAGAGAGCCATCGACGAACCAGATCCTCGGAGATCTGCAGAGATGAAGAGGATGATAAACGCTCTGTGA

Coding sequence (CDS)

ATGACAAATTTCAAATTTAGACTTCCGTCGCCACTGCTTCCTCGTTCGCCGCGGGAGCTCAGATCGTTGCAGCTTGGCGGAGACAGGCCTTGTGTGAGCTTACCTGCTCCTTCTGTGTTCAGCCCGTCGTTCGGTTCAGTAGTACGACCACTACCTGCAGAATTAGAGCGTCTGTTACTGATGAAAGAGCAGGAGAGAGTAATTGGAATGTGTGAGAGAGCTGGGTCCAGTAGGATATGTTGTTTTGTGTCTTTCAATTCAAGCAGCATTAGTGCAGCCATGTTTTTGACACGAGTGTTTGGGAGAACATTTCTAGCTGCTGCTAGATCAGAAACTTCTTCTGCCACAGCTGCTGCTGCTGCCACAGCTAGGACGGGCTATAACCCGCTTGAGGAGTTTTTCGAGGCAGATAGAAGTCCAGATGATGGCAAACCTGTTGTATATGGTCGAAGTTGGAAGGCTTCGGAACTACGGCTCAAGTCTTGGGACGATCTTAATAAACTATGGTATGTTCTTTTGAAGGAGAAGAATATGTTGATGACACAACGCCAGATGCTGAATGCACAAAATCTAAAGTTTCCTAATCCAGAACGCATTCCCAAGGTGAGGAAGTCAATGTGTCGAATCAAGCACGTACTTACCGAGAGAGCCATCGACGAACCAGATCCTCGGAGATCTGCAGAGATGAAGAGGATGATAAACGCTCTGTGA

Protein sequence

MTNFKFRLPSPLLPRSPRELRSLQLGGDRPCVSLPAPSVFSPSFGSVVRPLPAELERLLLMKEQERVIGMCERAGSSRICCFVSFNSSSISAAMFLTRVFGRTFLAAARSETSSATAAAAATARTGYNPLEEFFEADRSPDDGKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLKFPNPERIPKVRKSMCRIKHVLTERAIDEPDPRRSAEMKRMINAL*
Homology
[Close]
BLAST of CsGy1G001660 vs. ExPASy Swiss-Prot
Match: Q8K2Y7 (39S ribosomal protein L47, mitochondrial OS=Mus musculus OX=10090 GN=Mrpl47 PE=1 SV=2)

HSP 1 Score: 77.4 bits (189), Expect = 2.4e-13
Identity = 43/87 (49.43%), Postives = 56/87 (64.37%), Query Frame = 0 

Query: 130 LEEFFEADRSPDDGKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQ 189
           LEEFF+  ++  + K V  G SW   +LR KS +DL+KLWYVLLKE+NML+T  Q    Q
Sbjct: 66  LEEFFDDPKNWGEEK-VKSGASWTCQQLRNKSNEDLHKLWYVLLKERNMLLTLEQEAKRQ 125

Query: 190 NLKFPNPERIPKVRKSMCRIKHVLTER 217
            L  P+PER+ KV  SM  +  V+ ER
Sbjct: 126 RLPMPSPERLEKVVDSMDNVDKVVQER 151

[Close]
BLAST of CsGy1G001660 vs. ExPASy Swiss-Prot
Match: Q08DT6 (39S ribosomal protein L47, mitochondrial OS=Bos taurus OX=9913 GN=MRPL47 PE=2 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 4.1e-13
Identity = 43/87 (49.43%), Postives = 56/87 (64.37%), Query Frame = 0 

Query: 130 LEEFFEADRSPDDGKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQ 189
           LEEFF+  ++  + K V  G SW   +LR KS +DL+KLWYVLLKE+NML+T  Q    Q
Sbjct: 66  LEEFFDDPKNWGEEK-VKSGASWTCQQLRNKSNEDLHKLWYVLLKERNMLLTLEQEAKRQ 125

Query: 190 NLKFPNPERIPKVRKSMCRIKHVLTER 217
            L  P+PER+ KV  SM  +  V+ ER
Sbjct: 126 RLPMPSPERLEKVVDSMDALDKVVQER 151

[Close]
BLAST of CsGy1G001660 vs. ExPASy Swiss-Prot
Match: Q9HD33 (39S ribosomal protein L47, mitochondrial OS=Homo sapiens OX=9606 GN=MRPL47 PE=1 SV=2)

HSP 1 Score: 74.7 bits (182), Expect = 1.6e-12
Identity = 42/87 (48.28%), Postives = 55/87 (63.22%), Query Frame = 0 

Query: 130 LEEFFEADRSPDDGKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQ 189
           LEEFF+  ++    K V  G +W   +LR KS +DL+KLWYVLLKE+NML+T  Q    Q
Sbjct: 64  LEEFFDDPKNWGQEK-VKSGAAWTCQQLRNKSNEDLHKLWYVLLKERNMLLTLEQEAKRQ 123

Query: 190 NLKFPNPERIPKVRKSMCRIKHVLTER 217
            L  P+PER+ KV  SM  +  V+ ER
Sbjct: 124 RLPMPSPERLDKVVDSMDALDKVVQER 149

[Close]
BLAST of CsGy1G001660 vs. ExPASy Swiss-Prot
Match: Q2H080 (54S ribosomal protein L4, mitochondrial OS=Chaetomium globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 / NRRL 1970) OX=306901 GN=MRPL4 PE=3 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 2.3e-11
Identity = 45/104 (43.27%), Postives = 57/104 (54.81%), Query Frame = 0 

Query: 130 LEEFFEADRSPDDGKPVV--YGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLN 189
           L EFF+      +  P +  +GRSW A ELR KSWDDL++LW+V  KE+N + T     N
Sbjct: 99  LWEFFQNRTMVVNSPPEIAKHGRSWTAEELRHKSWDDLHRLWWVCAKERNRIATANWERN 158

Query: 190 AQNLKFPNP---ERIPKVRKSMCRIKHVLTERAIDEPDPRRSAE 229
              L F      ER   VR++M  IKHVLTER     D  + AE
Sbjct: 159 KSGLGFGEAEMRERDNAVRQTMRSIKHVLTERFYTWEDAVKVAE 202

[Close]
BLAST of CsGy1G001660 vs. ExPASy Swiss-Prot
Match: P87232 (54S ribosomal protein L4, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=mrpl4 PE=3 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 6.5e-11
Identity = 40/92 (43.48%), Postives = 55/92 (59.78%), Query Frame = 0 

Query: 128 NPLEEFFEADRS-PDDGKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQML 187
           +PL  FF   ++ P   +   +GR+W A ELR KS++DL+ LWY  L+EKN+L TQR  +
Sbjct: 36  HPLWNFFRDKQALPPPSEEAKFGRAWAAEELRWKSFNDLHGLWYNCLREKNLLFTQRAEM 95

Query: 188 NAQNLKFP--NPERIPKVRKSMCRIKHVLTER 217
               L  P  + ER+  V K+M  IK VL ER
Sbjct: 96  KRLQLTIPKASNERVLAVNKTMAAIKFVLWER 127

[Close]
BLAST of CsGy1G001660 vs. NCBI nr
Match: XP_004138121.1 (39S ribosomal protein L47, mitochondrial [Cucumis sativus] >KGN63602.1 hypothetical protein Csa_013761 [Cucumis sativus])

HSP 1 Score: 281 bits (719), Expect = 9.31e-94
Identity = 143/143 (100.00%), Postives = 143/143 (100.00%), Query Frame = 0 

Query: 94  MFLTRVFGRTFLAAARSETSSATAAAAATARTGYNPLEEFFEADRSPDDGKPVVYGRSWK 153
           MFLTRVFGRTFLAAARSETSSATAAAAATARTGYNPLEEFFEADRSPDDGKPVVYGRSWK
Sbjct: 1   MFLTRVFGRTFLAAARSETSSATAAAAATARTGYNPLEEFFEADRSPDDGKPVVYGRSWK 60

Query: 154 ASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLKFPNPERIPKVRKSMCRIKHVL 213
           ASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLKFPNPERIPKVRKSMCRIKHVL
Sbjct: 61  ASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLKFPNPERIPKVRKSMCRIKHVL 120

Query: 214 TERAIDEPDPRRSAEMKRMINAL 236
           TERAIDEPDPRRSAEMKRMINAL
Sbjct: 121 TERAIDEPDPRRSAEMKRMINAL 143

[Close]
BLAST of CsGy1G001660 vs. NCBI nr
Match: XP_008453113.1 (PREDICTED: 39S ribosomal protein L47, mitochondrial [Cucumis melo])

HSP 1 Score: 277 bits (708), Expect = 4.40e-92
Identity = 141/143 (98.60%), Postives = 142/143 (99.30%), Query Frame = 0 

Query: 94  MFLTRVFGRTFLAAARSETSSATAAAAATARTGYNPLEEFFEADRSPDDGKPVVYGRSWK 153
           MFLTRVFGRTFLAAARSETSSATAAAAATARTGYNPLEEFFEADRSPDDGKPVVYGRSWK
Sbjct: 1   MFLTRVFGRTFLAAARSETSSATAAAAATARTGYNPLEEFFEADRSPDDGKPVVYGRSWK 60

Query: 154 ASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLKFPNPERIPKVRKSMCRIKHVL 213
           ASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNL+FPNPERI KVRKSMCRIKHVL
Sbjct: 61  ASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLRFPNPERISKVRKSMCRIKHVL 120

Query: 214 TERAIDEPDPRRSAEMKRMINAL 236
           TERAIDEPDPRRSAEMKRMINAL
Sbjct: 121 TERAIDEPDPRRSAEMKRMINAL 143

[Close]
BLAST of CsGy1G001660 vs. NCBI nr
Match: XP_038879389.1 (39S ribosomal protein L47, mitochondrial [Benincasa hispida] >XP_038879390.1 39S ribosomal protein L47, mitochondrial [Benincasa hispida])

HSP 1 Score: 270 bits (691), Expect = 1.70e-89
Identity = 138/143 (96.50%), Postives = 139/143 (97.20%), Query Frame = 0 

Query: 94  MFLTRVFGRTFLAAARSETSSATAAAAATARTGYNPLEEFFEADRSPDDGKPVVYGRSWK 153
           MFLTRVFGRTFLAAARSETSSAT AAAATAR GYNPLEEFFEADRSPDD KPVVYGRSWK
Sbjct: 1   MFLTRVFGRTFLAAARSETSSATGAAAATARMGYNPLEEFFEADRSPDDDKPVVYGRSWK 60

Query: 154 ASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLKFPNPERIPKVRKSMCRIKHVL 213
           ASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNL+FPNPERIPKVRKSMCRIK VL
Sbjct: 61  ASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLRFPNPERIPKVRKSMCRIKQVL 120

Query: 214 TERAIDEPDPRRSAEMKRMINAL 236
           TERAIDEPDPRRSAEMKRMINAL
Sbjct: 121 TERAIDEPDPRRSAEMKRMINAL 143

[Close]
BLAST of CsGy1G001660 vs. NCBI nr
Match: XP_023530690.1 (39S ribosomal protein L47, mitochondrial-like [Cucurbita pepo subsp. pepo] >XP_023530691.1 39S ribosomal protein L47, mitochondrial-like [Cucurbita pepo subsp. pepo] >XP_023530692.1 39S ribosomal protein L47, mitochondrial-like [Cucurbita pepo subsp. pepo] >XP_023530693.1 39S ribosomal protein L47, mitochondrial-like [Cucurbita pepo subsp. pepo] >XP_023530694.1 39S ribosomal protein L47, mitochondrial-like [Cucurbita pepo subsp. pepo] >XP_023530695.1 39S ribosomal protein L47, mitochondrial-like [Cucurbita pepo subsp. pepo] >XP_023530697.1 39S ribosomal protein L47, mitochondrial-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 262 bits (669), Expect = 3.79e-86
Identity = 131/143 (91.61%), Postives = 137/143 (95.80%), Query Frame = 0 

Query: 94  MFLTRVFGRTFLAAARSETSSATAAAAATARTGYNPLEEFFEADRSPDDGKPVVYGRSWK 153
           MFLTR+FGRTFLAAARSE S+ATAAA +TARTGYNPLEEFFE  RSP+D KPVVYGRSWK
Sbjct: 1   MFLTRIFGRTFLAAARSEASAATAAAGSTARTGYNPLEEFFEVHRSPEDDKPVVYGRSWK 60

Query: 154 ASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLKFPNPERIPKVRKSMCRIKHVL 213
           ASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNL+FPNPERIPKVRKSMCRIK VL
Sbjct: 61  ASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLRFPNPERIPKVRKSMCRIKQVL 120

Query: 214 TERAIDEPDPRRSAEMKRMINAL 236
           TERAIDEPDPRRSAEMKRM+NAL
Sbjct: 121 TERAIDEPDPRRSAEMKRMVNAL 143

[Close]
BLAST of CsGy1G001660 vs. NCBI nr
Match: XP_022968794.1 (39S ribosomal protein L47, mitochondrial-like [Cucurbita maxima] >XP_022968803.1 39S ribosomal protein L47, mitochondrial-like [Cucurbita maxima] >XP_022968810.1 39S ribosomal protein L47, mitochondrial-like [Cucurbita maxima] >XP_022968818.1 39S ribosomal protein L47, mitochondrial-like [Cucurbita maxima] >XP_022968826.1 39S ribosomal protein L47, mitochondrial-like [Cucurbita maxima])

HSP 1 Score: 261 bits (668), Expect = 5.38e-86
Identity = 131/143 (91.61%), Postives = 137/143 (95.80%), Query Frame = 0 

Query: 94  MFLTRVFGRTFLAAARSETSSATAAAAATARTGYNPLEEFFEADRSPDDGKPVVYGRSWK 153
           M LTR+FGRTFLAAARSETS+ATAAA +TARTGYNPLEEFFEA RSPDD KPVVYGRSWK
Sbjct: 1   MLLTRIFGRTFLAAARSETSAATAAAGSTARTGYNPLEEFFEAHRSPDDDKPVVYGRSWK 60

Query: 154 ASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLKFPNPERIPKVRKSMCRIKHVL 213
           ASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNL+FPNPERIPKVRKSMCRIK VL
Sbjct: 61  ASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLRFPNPERIPKVRKSMCRIKQVL 120

Query: 214 TERAIDEPDPRRSAEMKRMINAL 236
           TERAIDEPDPRR AE+KRM+NAL
Sbjct: 121 TERAIDEPDPRRCAELKRMVNAL 143

[Close]
BLAST of CsGy1G001660 vs. ExPASy TrEMBL
Match: A0A0A0LS48 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G005630 PE=3 SV=1)

HSP 1 Score: 281 bits (719), Expect = 4.51e-94
Identity = 143/143 (100.00%), Postives = 143/143 (100.00%), Query Frame = 0 

Query: 94  MFLTRVFGRTFLAAARSETSSATAAAAATARTGYNPLEEFFEADRSPDDGKPVVYGRSWK 153
           MFLTRVFGRTFLAAARSETSSATAAAAATARTGYNPLEEFFEADRSPDDGKPVVYGRSWK
Sbjct: 1   MFLTRVFGRTFLAAARSETSSATAAAAATARTGYNPLEEFFEADRSPDDGKPVVYGRSWK 60

Query: 154 ASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLKFPNPERIPKVRKSMCRIKHVL 213
           ASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLKFPNPERIPKVRKSMCRIKHVL
Sbjct: 61  ASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLKFPNPERIPKVRKSMCRIKHVL 120

Query: 214 TERAIDEPDPRRSAEMKRMINAL 236
           TERAIDEPDPRRSAEMKRMINAL
Sbjct: 121 TERAIDEPDPRRSAEMKRMINAL 143

[Close]
BLAST of CsGy1G001660 vs. ExPASy TrEMBL
Match: A0A1S3BWK4 (39S ribosomal protein L47, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103493926 PE=3 SV=1)

HSP 1 Score: 277 bits (708), Expect = 2.13e-92
Identity = 141/143 (98.60%), Postives = 142/143 (99.30%), Query Frame = 0 

Query: 94  MFLTRVFGRTFLAAARSETSSATAAAAATARTGYNPLEEFFEADRSPDDGKPVVYGRSWK 153
           MFLTRVFGRTFLAAARSETSSATAAAAATARTGYNPLEEFFEADRSPDDGKPVVYGRSWK
Sbjct: 1   MFLTRVFGRTFLAAARSETSSATAAAAATARTGYNPLEEFFEADRSPDDGKPVVYGRSWK 60

Query: 154 ASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLKFPNPERIPKVRKSMCRIKHVL 213
           ASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNL+FPNPERI KVRKSMCRIKHVL
Sbjct: 61  ASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLRFPNPERISKVRKSMCRIKHVL 120

Query: 214 TERAIDEPDPRRSAEMKRMINAL 236
           TERAIDEPDPRRSAEMKRMINAL
Sbjct: 121 TERAIDEPDPRRSAEMKRMINAL 143

[Close]
BLAST of CsGy1G001660 vs. ExPASy TrEMBL
Match: A0A6J1I0P6 (39S ribosomal protein L47, mitochondrial-like OS=Cucurbita maxima OX=3661 GN=LOC111467922 PE=3 SV=1)

HSP 1 Score: 261 bits (668), Expect = 2.61e-86
Identity = 131/143 (91.61%), Postives = 137/143 (95.80%), Query Frame = 0 

Query: 94  MFLTRVFGRTFLAAARSETSSATAAAAATARTGYNPLEEFFEADRSPDDGKPVVYGRSWK 153
           M LTR+FGRTFLAAARSETS+ATAAA +TARTGYNPLEEFFEA RSPDD KPVVYGRSWK
Sbjct: 1   MLLTRIFGRTFLAAARSETSAATAAAGSTARTGYNPLEEFFEAHRSPDDDKPVVYGRSWK 60

Query: 154 ASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLKFPNPERIPKVRKSMCRIKHVL 213
           ASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNL+FPNPERIPKVRKSMCRIK VL
Sbjct: 61  ASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLRFPNPERIPKVRKSMCRIKQVL 120

Query: 214 TERAIDEPDPRRSAEMKRMINAL 236
           TERAIDEPDPRR AE+KRM+NAL
Sbjct: 121 TERAIDEPDPRRCAELKRMVNAL 143

[Close]
BLAST of CsGy1G001660 vs. ExPASy TrEMBL
Match: A0A6J1JCZ2 (39S ribosomal protein L47, mitochondrial OS=Cucurbita maxima OX=3661 GN=LOC111485667 PE=3 SV=1)

HSP 1 Score: 259 bits (663), Expect = 1.45e-85
Identity = 134/143 (93.71%), Postives = 137/143 (95.80%), Query Frame = 0 

Query: 94  MFLTRVFGRTFLAAARSETSSATAAAAATARTGYNPLEEFFEADRSPDDGKPVVYGRSWK 153
           MFLTRV GR FLAAARSETSSA AAAA+TA TGYNPLEEFFEADRSPDD KPVVYGRSWK
Sbjct: 1   MFLTRVIGRRFLAAARSETSSA-AAAASTATTGYNPLEEFFEADRSPDDDKPVVYGRSWK 60

Query: 154 ASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLKFPNPERIPKVRKSMCRIKHVL 213
           ASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNL+FPNPERIPKVRKSMCRIK VL
Sbjct: 61  ASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLRFPNPERIPKVRKSMCRIKQVL 120

Query: 214 TERAIDEPDPRRSAEMKRMINAL 236
           TERAIDEPDPRRSAEMKRM+NAL
Sbjct: 121 TERAIDEPDPRRSAEMKRMVNAL 142

[Close]
BLAST of CsGy1G001660 vs. ExPASy TrEMBL
Match: A0A6J1C2P6 (39S ribosomal protein L47, mitochondrial OS=Momordica charantia OX=3673 GN=LOC111007392 PE=3 SV=1)

HSP 1 Score: 256 bits (653), Expect = 4.82e-84
Identity = 133/143 (93.01%), Postives = 137/143 (95.80%), Query Frame = 0 

Query: 94  MFLTRVFGRTFLAAARSETSSATAAAAATARTGYNPLEEFFEADRSPDDGKPVVYGRSWK 153
           MFLTRVFGRT LAAARSETSSA AAAA+T RTGYNPLEEFFEADRSPDD KPVVYGRSWK
Sbjct: 1   MFLTRVFGRTLLAAARSETSSA-AAAASTVRTGYNPLEEFFEADRSPDDDKPVVYGRSWK 60

Query: 154 ASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLKFPNPERIPKVRKSMCRIKHVL 213
           ASELRLKSWDDLNKLWYVLLKEKNMLMTQRQML+AQNL+F NPERIPKVRKSMCRIK VL
Sbjct: 61  ASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLHAQNLRFLNPERIPKVRKSMCRIKQVL 120

Query: 214 TERAIDEPDPRRSAEMKRMINAL 236
           TERAI+EPDPRRSAEMKRMINAL
Sbjct: 121 TERAIEEPDPRRSAEMKRMINAL 142

[Close]
BLAST of CsGy1G001660 vs. TAIR 10
Match: AT1G07830.1 (ribosomal protein L29 family protein )

HSP 1 Score: 225.3 bits (573), Expect = 5.1e-59
Identity = 116/144 (80.56%), Postives = 125/144 (86.81%), Query Frame = 0 

Query: 94  MFLTRVFGRTFLAAARSETSSATAAAAA-TARTGYNPLEEFFEADRSPDDGKPVVYGRSW 153
           MFLTR  GR FLAAA + + S TAAAAA T RT  NPLEEFFE DRS D+ KPVVYGR W
Sbjct: 1   MFLTRFVGRRFLAAASARSESTTAAAAASTIRTPTNPLEEFFEFDRSQDEDKPVVYGRGW 60

Query: 154 KASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLKFPNPERIPKVRKSMCRIKHV 213
           KASELRLKSWDDL KLWYVLLKEKNMLMTQRQML AQN++FPNPERIPKVR+SMCRIKHV
Sbjct: 61  KASELRLKSWDDLQKLWYVLLKEKNMLMTQRQMLQAQNMQFPNPERIPKVRRSMCRIKHV 120

Query: 214 LTERAIDEPDPRRSAEMKRMINAL 237
           LTERAI+EPD RRSAEMKRM+N +
Sbjct: 121 LTERAIEEPDSRRSAEMKRMVNGM 144

The following BLAST results are available for this feature:
BLAST of CsGy1G001660 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q8K2Y72.4e-1349.4339S ribosomal protein L47, mitochondrial OS=Mus musculus OX=10090 GN=Mrpl47 PE=1... [more]
Q08DT64.1e-1349.4339S ribosomal protein L47, mitochondrial OS=Bos taurus OX=9913 GN=MRPL47 PE=2 SV... [more]
Q9HD331.6e-1248.2839S ribosomal protein L47, mitochondrial OS=Homo sapiens OX=9606 GN=MRPL47 PE=1 ... [more]
Q2H0802.3e-1143.2754S ribosomal protein L4, mitochondrial OS=Chaetomium globosum (strain ATCC 6205... [more]
P872326.5e-1143.4854S ribosomal protein L4, mitochondrial OS=Schizosaccharomyces pombe (strain 972... [more]
BLAST of CsGy1G001660 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004138121.19.31e-94100.0039S ribosomal protein L47, mitochondrial [Cucumis sativus] >KGN63602.1 hypotheti... [more]
XP_008453113.14.40e-9298.60PREDICTED: 39S ribosomal protein L47, mitochondrial [Cucumis melo][more]
XP_038879389.11.70e-8996.5039S ribosomal protein L47, mitochondrial [Benincasa hispida] >XP_038879390.1 39S... [more]
XP_023530690.13.79e-8691.6139S ribosomal protein L47, mitochondrial-like [Cucurbita pepo subsp. pepo] >XP_0... [more]
XP_022968794.15.38e-8691.6139S ribosomal protein L47, mitochondrial-like [Cucurbita maxima] >XP_022968803.1... [more]
BLAST of CsGy1G001660 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LS484.51e-94100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G005630 PE=3 SV=1[more]
A0A1S3BWK42.13e-9298.6039S ribosomal protein L47, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103493926... [more]
A0A6J1I0P62.61e-8691.6139S ribosomal protein L47, mitochondrial-like OS=Cucurbita maxima OX=3661 GN=LOC... [more]
A0A6J1JCZ21.45e-8593.7139S ribosomal protein L47, mitochondrial OS=Cucurbita maxima OX=3661 GN=LOC11148... [more]
A0A6J1C2P64.82e-8493.0139S ribosomal protein L47, mitochondrial OS=Momordica charantia OX=3673 GN=LOC11... [more]
BLAST of CsGy1G001660 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G07830.15.1e-5980.56ribosomal protein L29 family protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR038340MRP-L47 superfamily, mitochondrialGENE3D6.10.330.20coord: 125..225
e-value: 2.4E-30
score: 106.5
IPR001854Ribosomal protein L29/L35TIGRFAMTIGR00012TIGR00012coord: 156..216
e-value: 8.6E-6
score: 23.7
IPR010729Ribosomal protein L47, mitochondrialPFAMPF06984MRP-L47coord: 130..216
e-value: 5.5E-35
score: 119.4
IPR010729Ribosomal protein L47, mitochondrialPANTHERPTHR21183RIBOSOMAL PROTEIN L47, MITOCHONDRIAL-RELATEDcoord: 94..236
NoneNo IPR availableCDDcd00427Ribosomal_L29_HIPcoord: 155..216
e-value: 9.89219E-14
score: 61.7347
IPR036049Ribosomal protein L29/L35 superfamilySUPERFAMILY46561Ribosomal protein L29 (L29p)coord: 152..219

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy1G001660.2CsGy1G001660.2mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0032543 mitochondrial translation
biological_process GO:0006412 translation
cellular_component GO:0005762 mitochondrial large ribosomal subunit
cellular_component GO:0005761 mitochondrial ribosome
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome