![](http://cucurbitgenomics.org/sites/default/files/styles/slideshow/public/carousel/101322_web.jpg?itok=EG-G51x6)
CsGy1G001610 (gene) Cucumber (Gy14) v2.1
Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TGAGAATAACTCATAGTGAAATCCGATTATGGCGTTTACTGATGTAGAAGAAGAGTCTCCTTGTTGTGACGCTGATAAATCCAATTCTTTGTTGCCGACTGCCCGGTGCGGTTGTTTTCGGCTATCGTGTTTTGGATCCCGTCGTGTAGCCACTGTTGGACCATCGTGGTGGGAGCGGATTAGGGCATCGCAAGTTCATAACGAGGGACGGTGGTGGACCAGAGGGGTTAGGGTTCTTTTGAAGCTCCGTGAGTGGTCGGAGATTGTTGCTGGACCGAGATGGAAGACTTTCATTCGTCGATTTAATCGGAATCGGAGTGGTGGTTGTGGTGGTTGTGGTAGTGGTGGTGGTGGTGGAAGTGGTGTTAGGGCTGGGAAATTTCAATATGATCCCTTGAGTTACGCTATGAATTTCGATGAAGGTTCGAGACAGATTGGTGAATTGGATGATGATATAGATGATTTCAATGGTTATCGAAACTTCTCTGCTCGTTATGCTTCGATTCCGGCGCCGTTGAAGACGGGAGGAACTAAGAATGTTTCTGCCGTCGCGTAAAGGTGCGCTGTGTTTAATAAAATACGCCGTGTTTAGTGTTGTTATTGTCCACACATTTGGGCTGGCTGACATCACCGCCGCCACCGCCGCCACCACCACCTCCTCCGTTAGATTTTTCTTGTTTTCTTTTTTAATTCTCAAAAGTAAATACATGTTTGAGTTAATTTTGGACTTTCCTTTCTCTTTCTTCCTTATGGTATTGGTGGCACATCAGGATCAATGTACAATACGATAAGAGTGGGTCTTTTTCTTTAAAAAACTATTCTTTTATATTAAATTATATCCTAATAGTATATAATAATACTGATTGGGGGACTTGCTTTGTTTTATGTGGGGGTTAAATAAAAAG TGAGAATAACTCATAGTGAAATCCGATTATGGCGTTTACTGATGTAGAAGAAGAGTCTCCTTGTTGTGACGCTGATAAATCCAATTCTTTGTTGCCGACTGCCCGGTGCGGTTGTTTTCGGCTATCGTGTTTTGGATCCCGTCGTGTAGCCACTGTTGGACCATCGTGGTGGGAGCGGATTAGGGCATCGCAAGTTCATAACGAGGGACGGTGGTGGACCAGAGGGGTTAGGGTTCTTTTGAAGCTCCGTGAGTGGTCGGAGATTGTTGCTGGACCGAGATGGAAGACTTTCATTCGTCGATTTAATCGGAATCGGAGTGGTGGTTGTGGTGGTTGTGGTAGTGGTGGTGGTGGTGGAAGTGGTGTTAGGGCTGGGAAATTTCAATATGATCCCTTGAGTTACGCTATGAATTTCGATGAAGGTTCGAGACAGATTGGTGAATTGGATGATGATATAGATGATTTCAATGGTTATCGAAACTTCTCTGCTCGTTATGCTTCGATTCCGGCGCCGTTGAAGACGGGAGGAACTAAGAATGTTTCTGCCGTCGCGTAAAGGTGCGCTGTGTTTAATAAAATACGCCGTGTTTAGTGTTGTTATTGTCCACACATTTGGGCTGGCTGACATCACCGCCGCCACCGCCGCCACCACCACCTCCTCCGTTAGATTTTTCTTGTTTTCTTTTTTAATTCTCAAAAGTAAATACATGTTTGAGTTAATTTTGGACTTTCCTTTCTCTTTCTTCCTTATGGTATTGGTGGCACATCAGGATCAATGTACAATACGATAAGAGTGGGTCTTTTTCTTTAAAAAACTATTCTTTTATATTAAATTATATCCTAATAGTATATAATAATACTGATTGGGGGACTTGCTTTGTTTTATGTGGGGGTTAAATAAAAAG ATGGCGTTTACTGATGTAGAAGAAGAGTCTCCTTGTTGTGACGCTGATAAATCCAATTCTTTGTTGCCGACTGCCCGGTGCGGTTGTTTTCGGCTATCGTGTTTTGGATCCCGTCGTGTAGCCACTGTTGGACCATCGTGGTGGGAGCGGATTAGGGCATCGCAAGTTCATAACGAGGGACGGTGGTGGACCAGAGGGGTTAGGGTTCTTTTGAAGCTCCGTGAGTGGTCGGAGATTGTTGCTGGACCGAGATGGAAGACTTTCATTCGTCGATTTAATCGGAATCGGAGTGGTGGTTGTGGTGGTTGTGGTAGTGGTGGTGGTGGTGGAAGTGGTGTTAGGGCTGGGAAATTTCAATATGATCCCTTGAGTTACGCTATGAATTTCGATGAAGGTTCGAGACAGATTGGTGAATTGGATGATGATATAGATGATTTCAATGGTTATCGAAACTTCTCTGCTCGTTATGCTTCGATTCCGGCGCCGTTGAAGACGGGAGGAACTAAGAATGTTTCTGCCGTCGCGTAA MAFTDVEEESPCCDADKSNSLLPTARCGCFRLSCFGSRRVATVGPSWWERIRASQVHNEGRWWTRGVRVLLKLREWSEIVAGPRWKTFIRRFNRNRSGGCGGCGSGGGGGSGVRAGKFQYDPLSYAMNFDEGSRQIGELDDDIDDFNGYRNFSARYASIPAPLKTGGTKNVSAVA* Homology
BLAST of CsGy1G001610 vs. NCBI nr
Match: XP_011657987.1 (uncharacterized protein LOC105435925 [Cucumis sativus] >KGN63596.1 hypothetical protein Csa_013668 [Cucumis sativus]) HSP 1 Score: 365 bits (937), Expect = 1.50e-127 Identity = 175/175 (100.00%), Postives = 175/175 (100.00%), Query Frame = 0
BLAST of CsGy1G001610 vs. NCBI nr
Match: KAA0057881.1 (putative Serine/arginine repetitive matrix protein 2 [Cucumis melo var. makuwa]) HSP 1 Score: 339 bits (870), Expect = 2.48e-117 Identity = 165/176 (93.75%), Postives = 172/176 (97.73%), Query Frame = 0
BLAST of CsGy1G001610 vs. NCBI nr
Match: XP_008453108.1 (PREDICTED: uncharacterized protein LOC103493921 [Cucumis melo] >TYJ98568.1 putative Serine/arginine repetitive matrix protein 2 [Cucumis melo var. makuwa]) HSP 1 Score: 337 bits (864), Expect = 1.90e-116 Identity = 164/176 (93.18%), Postives = 171/176 (97.16%), Query Frame = 0
BLAST of CsGy1G001610 vs. NCBI nr
Match: XP_038878924.1 (uncharacterized protein LOC120071012 [Benincasa hispida]) HSP 1 Score: 316 bits (810), Expect = 2.64e-108 Identity = 158/177 (89.27%), Postives = 163/177 (92.09%), Query Frame = 0
BLAST of CsGy1G001610 vs. NCBI nr
Match: KAG7023141.1 (hypothetical protein SDJN02_14166, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 281 bits (720), Expect = 1.59e-94 Identity = 140/177 (79.10%), Postives = 149/177 (84.18%), Query Frame = 0
BLAST of CsGy1G001610 vs. ExPASy TrEMBL
Match: A0A0A0LUB2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G005570 PE=4 SV=1) HSP 1 Score: 365 bits (937), Expect = 7.27e-128 Identity = 175/175 (100.00%), Postives = 175/175 (100.00%), Query Frame = 0
BLAST of CsGy1G001610 vs. ExPASy TrEMBL
Match: A0A5A7UWM1 (Putative Serine/arginine repetitive matrix protein 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G001790 PE=4 SV=1) HSP 1 Score: 339 bits (870), Expect = 1.20e-117 Identity = 165/176 (93.75%), Postives = 172/176 (97.73%), Query Frame = 0
BLAST of CsGy1G001610 vs. ExPASy TrEMBL
Match: A0A5D3BK38 (Putative Serine/arginine repetitive matrix protein 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold350G001870 PE=4 SV=1) HSP 1 Score: 337 bits (864), Expect = 9.21e-117 Identity = 164/176 (93.18%), Postives = 171/176 (97.16%), Query Frame = 0
BLAST of CsGy1G001610 vs. ExPASy TrEMBL
Match: A0A1S3BVG0 (uncharacterized protein LOC103493921 OS=Cucumis melo OX=3656 GN=LOC103493921 PE=4 SV=1) HSP 1 Score: 337 bits (864), Expect = 9.21e-117 Identity = 164/176 (93.18%), Postives = 171/176 (97.16%), Query Frame = 0
BLAST of CsGy1G001610 vs. ExPASy TrEMBL
Match: A0A6J1JH52 (uncharacterized protein LOC111485666 OS=Cucurbita maxima OX=3661 GN=LOC111485666 PE=4 SV=1) HSP 1 Score: 279 bits (714), Expect = 6.30e-94 Identity = 139/177 (78.53%), Postives = 148/177 (83.62%), Query Frame = 0
BLAST of CsGy1G001610 vs. TAIR 10
Match: AT3G01430.1 (BEST Arabidopsis thaliana protein match is: NHL domain-containing protein (TAIR:AT5G14890.1); Has 98 Blast hits to 98 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 98; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 114.4 bits (285), Expect = 9.4e-26 Identity = 69/161 (42.86%), Postives = 92/161 (57.14%), Query Frame = 0
BLAST of CsGy1G001610 vs. TAIR 10
Match: AT3G48020.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G62865.1); Has 82 Blast hits to 82 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 82; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 107.1 bits (266), Expect = 1.5e-23 Identity = 64/134 (47.76%), Postives = 79/134 (58.96%), Query Frame = 0
BLAST of CsGy1G001610 vs. TAIR 10
Match: AT5G14890.1 (NHL domain-containing protein ) HSP 1 Score: 107.1 bits (266), Expect = 1.5e-23 Identity = 63/154 (40.91%), Postives = 89/154 (57.79%), Query Frame = 0
BLAST of CsGy1G001610 vs. TAIR 10
Match: AT5G62865.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G48020.1). ) HSP 1 Score: 103.6 bits (257), Expect = 1.7e-22 Identity = 68/145 (46.90%), Postives = 80/145 (55.17%), Query Frame = 0
BLAST of CsGy1G001610 vs. TAIR 10
Match: AT5G25240.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). ) HSP 1 Score: 46.2 bits (108), Expect = 3.1e-05 Identity = 28/78 (35.90%), Postives = 36/78 (46.15%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
|