CsGy1G000930 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy1G000930
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	28 kDa ribonucleoprotein, chloroplastic-like
Location	Gy14Chr1: 532429 .. 534264 (-)
RNA-Seq Expression	CsGy1G000930
Synteny	CsGy1G000930

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GCCATCTCTTTCTTCACTGCTCCTTATCCTCAATTCCTCACCCCTCACCTCTTTGGGTGTTAAAGCCTTGTCCTCTAAAACCCTTCTTCTTCTTCTTCCTCTTCTATCTCTTCTATCTCTTCTATCTCTTCCTTTCGATTCAGTAATGGCTTCTTCTTCAGCCACTTCCCTTTTCAAGCCTTTATCCAAGCCGGATTCTTGCTTTCTCTCTTTACCTTCTCTATTCACCGGCAGACCCCCACATACTTTCCTCTCTTTCCCTTCAAAATTCATCCCCTTTCATCTTTCCTCTTCGTCTTCCTATTCTTCAGGCTTTTCCCCTTCGAAGAAGAAACCCCATCTTCCCTCTGTAGCTCAAACTTCCGACTGGGCTCAAGAAGATGACACTATCACCATTGACCCAAAACTCGACAACGACGAAAATGGGGGAGAAGAAGGCGGCCCCCATTGGGAAAATGAAGAGCTCAGTGAAACTGAGTCTCGTATTTCTGATTGGGAAGGTGAAGGTGAAGATGGAGGAAGTGAGGCTGAAGTAGGAGGAGATGAAGAAGAAGACGAAGAAGGGGAACAAGGACCTTATGAAGAGCCAAACGAAGATGCTAAATTGTTTGTTGGGAATTTGCCTTATGATATTGACAGTGAAAAGTTAGCAATGCTCTTTGAGAAGGCTGGAACCGTGGAGATTGCTGAGGTGAGCTTTAGTTACACTATTGCTGTCTGTTCTGTTTATGGATTTGGTTTAAGCTTTTAATCTGCTTGTTATTTGTAGGTTATTTACAACAGAGAAACAGATCGGAGTCGTGGTTTTGGGTTTGTGACAATGAGTACTGTTGAAGAAGCCGAGAAAGCTGTGGATACCTTCAACCGTTATGTAAGCTTCTGTAGACAAGATTCAGCCATATTTGAGTATCATGAATGAAACCTTATCTTCATTCTTGCTTCACAATGGAAGCATTTACTGCCAGTATATCTTTGCATTTAACCATTTCATTTTATTCTGAAGAGTTTAAATGGTCTGGTTTTCATGAATCTGAGGACTTGTTAGTGTAGGACTTAGCCATTAGGACGAAAGGTGAATTTGTTCAATTTTCTTTCCGTGTGTACTTTTGAAATAAGTTATTTTTTAGTGTGTGGCTACCAGCTTTTAAAGCTTATTTTCTCTAGTCAATCCTTACATATCCATAGCTGTAATGATTTGTTTGTTTGAATGTTTGATGATGAGATTGATTTTTCTATCTGGATAAGCTCTAGAGGCCATGTCCTTGTGTAGAATAGAGTATTTCTAACATATGTAATTGTTTGTTTTCTTTGTTTGAGATATCCCTTCACTTTTACTTGGTACTTTGTTTAAACTTTTCCATTCTCAGTTCTACCGAAAAATTTATGGGAATAAAATGTGCTTTTCTGGGTTTATAGGATTTATCCGGGAGGCTATTGACTGTTAATAAGGCTGCTCCAAGAGGTTCAAGGCAAGAACGCGAACCTCGACCATTCCAACCCACTTTCAGAATCTATGTAGGCAATCTTCCATGGGATGTAGACAATGGACGCTTGGAGCAACTCTTTAGTGAACATGGTAAAGTAGTAGACGCTCGGGTTCTTTATGACCGAGACAGTGGCCGTTCTCGAGGCTTTGGCTTTGTGACCATGGCTGATGAAACTGGAATGAATGATGCCATTGCTGCTCTGGATGGACAGGTACAAAAACTTGAGTTTTCCTAATCACCTCATTGTCAAATTCAAATTGGTTTAACACTTCCTTCATGCCTCCAATAAGGAGAAAAGATTTACCAACTGCTCACAAAACATCTTGAAATTTGAAATGTGCAGAGTCTA

mRNA sequence

GCCATCTCTTTCTTCACTGCTCCTTATCCTCAATTCCTCACCCCTCACCTCTTTGGGTGTTAAAGCCTTGTCCTCTAAAACCCTTCTTCTTCTTCTTCCTCTTCTATCTCTTCTATCTCTTCTATCTCTTCCTTTCGATTCAGTAATGGCTTCTTCTTCAGCCACTTCCCTTTTCAAGCCTTTATCCAAGCCGGATTCTTGCTTTCTCTCTTTACCTTCTCTATTCACCGGCAGACCCCCACATACTTTCCTCTCTTTCCCTTCAAAATTCATCCCCTTTCATCTTTCCTCTTCGTCTTCCTATTCTTCAGGCTTTTCCCCTTCGAAGAAGAAACCCCATCTTCCCTCTGTAGCTCAAACTTCCGACTGGGCTCAAGAAGATGACACTATCACCATTGACCCAAAACTCGACAACGACGAAAATGGGGGAGAAGAAGGCGGCCCCCATTGGGAAAATGAAGAGCTCAGTGAAACTGAGTCTCGTATTTCTGATTGGGAAGGTGAAGGTGAAGATGGAGGAAGTGAGGCTGAAGTAGGAGGAGATGAAGAAGAAGACGAAGAAGGGGAACAAGGACCTTATGAAGAGCCAAACGAAGATGCTAAATTGTTTGTTGGGAATTTGCCTTATGATATTGACAGTGAAAAGTTAGCAATGCTCTTTGAGAAGGCTGGAACCGTGGAGATTGCTGAGGTTATTTACAACAGAGAAACAGATCGGAGTCGTGGTTTTGGGTTTGTGACAATGAGTACTGTTGAAGAAGCCGAGAAAGCTGTGGATACCTTCAACCGTTATGATTTATCCGGGAGGCTATTGACTGTTAATAAGGCTGCTCCAAGAGGTTCAAGGCAAGAACGCGAACCTCGACCATTCCAACCCACTTTCAGAATCTATGTAGGCAATCTTCCATGGGATGTAGACAATGGACGCTTGGAGCAACTCTTTAGTGAACATGGTAAAGTAGTAGACGCTCGGGTTCTTTATGACCGAGACAGTGGCCGTTCTCGAGGCTTTGGCTTTGTGACCATGGCTGATGAAACTGGAATGAATGATGCCATTGCTGCTCTGGATGGACAGGTACAAAAACTTGAGTTTTCCTAATCACCTCATTGTCAAATTCAAATTGGTTTAACACTTCCTTCATGCCTCCAATAAGGAGAAAAGATTTACCAACTGCTCACAAAACATCTTGAAATTTGAAATGTGCAGAGTCTA

Coding sequence (CDS)

ATGGCTTCTTCTTCAGCCACTTCCCTTTTCAAGCCTTTATCCAAGCCGGATTCTTGCTTTCTCTCTTTACCTTCTCTATTCACCGGCAGACCCCCACATACTTTCCTCTCTTTCCCTTCAAAATTCATCCCCTTTCATCTTTCCTCTTCGTCTTCCTATTCTTCAGGCTTTTCCCCTTCGAAGAAGAAACCCCATCTTCCCTCTGTAGCTCAAACTTCCGACTGGGCTCAAGAAGATGACACTATCACCATTGACCCAAAACTCGACAACGACGAAAATGGGGGAGAAGAAGGCGGCCCCCATTGGGAAAATGAAGAGCTCAGTGAAACTGAGTCTCGTATTTCTGATTGGGAAGGTGAAGGTGAAGATGGAGGAAGTGAGGCTGAAGTAGGAGGAGATGAAGAAGAAGACGAAGAAGGGGAACAAGGACCTTATGAAGAGCCAAACGAAGATGCTAAATTGTTTGTTGGGAATTTGCCTTATGATATTGACAGTGAAAAGTTAGCAATGCTCTTTGAGAAGGCTGGAACCGTGGAGATTGCTGAGGTTATTTACAACAGAGAAACAGATCGGAGTCGTGGTTTTGGGTTTGTGACAATGAGTACTGTTGAAGAAGCCGAGAAAGCTGTGGATACCTTCAACCGTTATGATTTATCCGGGAGGCTATTGACTGTTAATAAGGCTGCTCCAAGAGGTTCAAGGCAAGAACGCGAACCTCGACCATTCCAACCCACTTTCAGAATCTATGTAGGCAATCTTCCATGGGATGTAGACAATGGACGCTTGGAGCAACTCTTTAGTGAACATGGTAAAGTAGTAGACGCTCGGGTTCTTTATGACCGAGACAGTGGCCGTTCTCGAGGCTTTGGCTTTGTGACCATGGCTGATGAAACTGGAATGAATGATGCCATTGCTGCTCTGGATGGACAGGTACAAAAACTTGAGTTTTCCTAA

Protein sequence

MASSSATSLFKPLSKPDSCFLSLPSLFTGRPPHTFLSFPSKFIPFHLSSSSSYSSGFSPSKKKPHLPSVAQTSDWAQEDDTITIDPKLDNDENGGEEGGPHWENEELSETESRISDWEGEGEDGGSEAEVGGDEEEDEEGEQGPYEEPNEDAKLFVGNLPYDIDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVDTFNRYDLSGRLLTVNKAAPRGSRQEREPRPFQPTFRIYVGNLPWDVDNGRLEQLFSEHGKVVDARVLYDRDSGRSRGFGFVTMADETGMNDAIAALDGQVQKLEFS*

Homology

[Close]

BLAST of CsGy1G000930 vs. ExPASy Swiss-Prot
Match: Q04836 (31 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP31A PE=1 SV=1)

HSP 1 Score: 289.3 bits (739), Expect = 5.4e-77
Identity = 176/329 (53.50%), Postives = 219/329 (66.57%), Query Frame = 0


Query: 1   MASSSATSLFKPLSKPDSCFLSL-------------------PSLFTGRPPHTFLSFPSK 60
           MASS  TS  KPL+  DS   ++                    SL TGR     ++ P  
Sbjct: 1   MASSIVTSSLKPLAMADSSSSTIFSHPSISSTISSSRIRSSSVSLLTGR-----INLPLS 60

Query: 61  FIPFHLSSSSSYSSGFSPSKKKPHLPSVAQTSDWAQEDDTITIDPKLDNDENGGEEGGPH 120
           F    LS  +      +  KK P +  VAQTSDWA+E    ++   ++  EN        
Sbjct: 61  FSRVSLSLKTK-----THLKKSPFVSFVAQTSDWAEEGGEGSV--AVEETENS------- 120

Query: 121 WENEELSETESRISDWEGEGEDGGSEAEVGGDEEEDEEGEQGPYEEPNEDAKLFVGNLPY 180
            E++++SE +    D        G E+E  GD  E    E+  + EP+E+AKLFVGNL Y
Sbjct: 121 LESQDVSEGDESEGDASEGDVSEGDESE--GDVSEGAVSERAEFPEPSEEAKLFVGNLAY 180

Query: 181 DIDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVDTFNRYDLSGR 240
           D++S+ LAMLFE+AGTVEIAEVIYNRETD+SRGFGFVTMS+V+EAE AV+ FNRYDL+GR
Sbjct: 181 DVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEKFNRYDLNGR 240

Query: 241 LLTVNKAAPRGSRQEREPRPFQPTFRIYVGNLPWDVDNGRLEQLFSEHGKVVDARVLYDR 300
           LLTVNKAAPRGSR ER PR ++P FR+YVGNLPWDVDNGRLEQLFSEHGKVV+ARV+YDR
Sbjct: 241 LLTVNKAAPRGSRPERAPRVYEPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDR 300

Query: 301 DSGRSRGFGFVTMADETGMNDAIAALDGQ 311
           ++GRSRGFGFVTM+D   +N+AI+ALDGQ
Sbjct: 301 ETGRSRGFGFVTMSDVDELNEAISALDGQ 308

[Close]

BLAST of CsGy1G000930 vs. ExPASy Swiss-Prot
Match: P19683 (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=1 SV=1)

HSP 1 Score: 276.6 bits (706), Expect = 3.6e-73
Identity = 168/309 (54.37%), Postives = 204/309 (66.02%), Query Frame = 0


Query: 11  KPLSKP-----DSCFLSLPSLFTGRPPHTFLSFP---SKFIPFH-LSSSSSYSSGFSPSK 70
           KP+ KP     +SC +SLP LF         ++P   +   P   L  S +YS      K
Sbjct: 6   KPIIKPSSMATNSCLISLPPLFATTTKSKSFAYPYLSNTLKPIKLLHLSCTYSPCILSPK 65

Query: 71  KKPHLPSVAQTSDWAQEDDTITIDPKLDNDENGGEEGGPHWENEELSETESRISDWEGEG 130
           KK         S   +E++T+ +D +       G+E G  +  E   E        E  G
Sbjct: 66  KK------TSVSALQEEENTLILDGQ-------GQESGDLFNFEPSGEETEEEGFVEAVG 125

Query: 131 EDGGSEAEVGGDEEEDEEGEQGPYEEPNEDAKLFVGNLPYDIDSEKLAMLFEKAGTVEIA 190
            D G   EV  DEEE+E      ++EP EDAKLFVGNLPYD+DSE LA LFE+AG VEIA
Sbjct: 126 -DAGESDEVEADEEEEE------FQEPPEDAKLFVGNLPYDVDSEGLARLFEQAGVVEIA 185

Query: 191 EVIYNRETDRSRGFGFVTMSTVEEAEKAVDTFNRYDLSGRLLTVNKAAPRGSRQEREPRP 250
           EVIYNR+TD+SRGFGFVTMSTVEEAEKAV+ +NRYD++GRLLTVNKAA RG R ER PR 
Sbjct: 186 EVIYNRDTDQSRGFGFVTMSTVEEAEKAVEMYNRYDVNGRLLTVNKAARRGERPERPPRT 245

Query: 251 FQPTFRIYVGNLPWDVDNGRLEQLFSEHGKVVDARVLYDRDSGRSRGFGFVTMADETGMN 310
           F+ ++RIYVGN+PW +D+ RLEQLFSEHGKVV ARV+YDR++GRSRGFGFVTMA E  M+
Sbjct: 246 FEQSYRIYVGNIPWGIDDARLEQLFSEHGKVVSARVVYDRETGRSRGFGFVTMASEAEMS 294

[Close]

BLAST of CsGy1G000930 vs. ExPASy Swiss-Prot
Match: P19682 (28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=1 SV=1)

HSP 1 Score: 271.9 bits (694), Expect = 8.9e-72
Identity = 158/294 (53.74%), Postives = 196/294 (66.67%), Query Frame = 0


Query: 17  DSCFLSLPSLFTGRPPHTFLSFPSKFIPFHLSSSSSYSSGFSPSKKKPHLPSVAQTSDWA 76
           + C +SLP  FT     +   F S  +   +S SSS  +  S +K+    P+    S  +
Sbjct: 4   NGCLISLPPFFTTTKSISSYPFLSTQLK-PISLSSSLPTLLSLNKRTTQFPTF--VSVLS 63

Query: 77  QEDDTITIDPKLDNDENGGEEGGPHWENEELSETESRISDWEGEGEDGGSEAEVGGDEEE 136
           ++D+T+ +D                                  + E GG      G+  E
Sbjct: 64  EDDNTLVLD----------------------------------DQEQGGDFPSFVGEAGE 123

Query: 137 DEEGEQGPYEEPNEDAKLFVGNLPYDIDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFG 196
            EE     Y+EP+EDAKLFVGNLPYDIDSE LA LF++AG VEIAEVIYNRETDRSRGFG
Sbjct: 124 TEE-----YQEPSEDAKLFVGNLPYDIDSEGLAQLFQQAGVVEIAEVIYNRETDRSRGFG 183

Query: 197 FVTMSTVEEAEKAVDTFNRYDLSGRLLTVNKAAPRGSRQEREPRPFQPTFRIYVGNLPWD 256
           FVTMSTVEEA+KAV+ +++YDL+GRLLTVNKAAPRGSR ER PR FQPT+RIYVGN+PWD
Sbjct: 184 FVTMSTVEEADKAVELYSQYDLNGRLLTVNKAAPRGSRPERAPRTFQPTYRIYVGNIPWD 243

Query: 257 VDNGRLEQLFSEHGKVVDARVLYDRDSGRSRGFGFVTMADETGMNDAIAALDGQ 311
           +D+ RLEQ+FSEHGKVV ARV++DR+SGRSRGFGFVTM+ E  M++AIA LDGQ
Sbjct: 244 IDDARLEQVFSEHGKVVSARVVFDRESGRSRGFGFVTMSSEAEMSEAIANLDGQ 255

[Close]

BLAST of CsGy1G000930 vs. ExPASy Swiss-Prot
Match: P28644 (28 kDa ribonucleoprotein, chloroplastic OS=Spinacia oleracea OX=3562 PE=1 SV=1)

HSP 1 Score: 261.5 bits (667), Expect = 1.2e-68
Identity = 151/243 (62.14%), Postives = 174/243 (71.60%), Query Frame = 0


Query: 69  VAQTSDWAQEDDTITIDPKLDNDENGGEEGGPHWENEELSETESRISDWEGEGEDGGSEA 128
           VAQTS+W QE  T  +   L+ + +   EG   W                      GSE 
Sbjct: 2   VAQTSEWEQEGSTNAV---LEGESD--PEGAVSW----------------------GSET 61

Query: 129 EVGGDEEEDEEGEQGPYEEPNEDAKLFVGNLPYDIDSEKLAMLFEKAGTVEIAEVIYNRE 188
           +V   +E   EG QG + EP E+AKLFVGNLPYD+DSEKLA +F+ AG VEIAEVIYNRE
Sbjct: 62  QV--SDEGGVEGGQG-FSEPPEEAKLFVGNLPYDVDSEKLAGIFDAAGVVEIAEVIYNRE 121

Query: 189 TDRSRGFGFVTMSTVEEAEKAVDTFNRYDLSGRLLTVNKAAPRGSRQEREPR-PFQPTFR 248
           TDRSRGFGFVTMSTVEEAEKAV+  N YD+ GR LTVNKAAPRGS  ER PR  F+P+ R
Sbjct: 122 TDRSRGFGFVTMSTVEEAEKAVELLNGYDMDGRQLTVNKAAPRGS-PERAPRGDFEPSCR 181

Query: 249 IYVGNLPWDVDNGRLEQLFSEHGKVVDARVLYDRDSGRSRGFGFVTMADETGMNDAIAAL 308
           +YVGNLPWDVD  RLEQLFSEHGKVV ARV+ DR++GRSRGFGFVTM+ E+ +NDAIAAL
Sbjct: 182 VYVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDRETGRSRGFGFVTMSSESEVNDAIAAL 213

Query: 309 DGQ 311
           DGQ
Sbjct: 242 DGQ 213

[Close]

BLAST of CsGy1G000930 vs. ExPASy Swiss-Prot
Match: Q9FGS0 (RNA-binding protein CP31B, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP31B PE=1 SV=1)

HSP 1 Score: 261.2 bits (666), Expect = 1.6e-68
Identity = 151/270 (55.93%), Postives = 186/270 (68.89%), Query Frame = 0


Query: 45  FHLSSSSSYSSGFSPSKKKPHLPSVAQTSDWAQEDDTITIDPKLDNDENGGEEGGPHWEN 104
           F++SSS S+   FS S +  +L    ++         +T   +  N           W  
Sbjct: 30  FNISSSESHRFNFSLSSRPVNLTLSLKSKTLRNSSPVVTFVSQTSN-----------WAE 89

Query: 105 EELSETESRISDWEGEGEDGGSEAEVGGDE---EEDEEGEQG-PYEEPNEDAKLFVGNLP 164
           EE             EGEDG     +GG     +E  E E G  + EP E+AKLFVGNLP
Sbjct: 90  EE-------------EGEDG----SIGGTSVTVDESFESEDGVGFPEPPEEAKLFVGNLP 149

Query: 165 YDIDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVDTFNRYDLSG 224
           YD+DS+ LAMLFE+AGTVEI+EVIYNR+TD+SRGFGFVTMSTVEEAEKAV+ FN ++++G
Sbjct: 150 YDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEKFNSFEVNG 209

Query: 225 RLLTVNKAAPRGSRQEREPRPFQPTFRIYVGNLPWDVDNGRLEQLFSEHGKVVDARVLYD 284
           R LTVN+AAPRGSR ER+PR +   FRIYVGNLPWDVD+GRLE+LFSEHGKVVDARV+ D
Sbjct: 210 RRLTVNRAAPRGSRPERQPRVYDAAFRIYVGNLPWDVDSGRLERLFSEHGKVVDARVVSD 269

Query: 285 RDSGRSRGFGFVTMADETGMNDAIAALDGQ 311
           R++GRSRGFGFV M++E  +N AIAALDGQ
Sbjct: 270 RETGRSRGFGFVQMSNENEVNVAIAALDGQ 271

[Close]

BLAST of CsGy1G000930 vs. NCBI nr
Match: XP_004138078.1 (28 kDa ribonucleoprotein, chloroplastic [Cucumis sativus] >KAE8652388.1 hypothetical protein Csa_013384 [Cucumis sativus])

HSP 1 Score: 608 bits (1568), Expect = 8.62e-219
Identity = 310/310 (100.00%), Postives = 310/310 (100.00%), Query Frame = 0


Query: 1   MASSSATSLFKPLSKPDSCFLSLPSLFTGRPPHTFLSFPSKFIPFHLSSSSSYSSGFSPS 60
           MASSSATSLFKPLSKPDSCFLSLPSLFTGRPPHTFLSFPSKFIPFHLSSSSSYSSGFSPS
Sbjct: 1   MASSSATSLFKPLSKPDSCFLSLPSLFTGRPPHTFLSFPSKFIPFHLSSSSSYSSGFSPS 60

Query: 61  KKKPHLPSVAQTSDWAQEDDTITIDPKLDNDENGGEEGGPHWENEELSETESRISDWEGE 120
           KKKPHLPSVAQTSDWAQEDDTITIDPKLDNDENGGEEGGPHWENEELSETESRISDWEGE
Sbjct: 61  KKKPHLPSVAQTSDWAQEDDTITIDPKLDNDENGGEEGGPHWENEELSETESRISDWEGE 120

Query: 121 GEDGGSEAEVGGDEEEDEEGEQGPYEEPNEDAKLFVGNLPYDIDSEKLAMLFEKAGTVEI 180
           GEDGGSEAEVGGDEEEDEEGEQGPYEEPNEDAKLFVGNLPYDIDSEKLAMLFEKAGTVEI
Sbjct: 121 GEDGGSEAEVGGDEEEDEEGEQGPYEEPNEDAKLFVGNLPYDIDSEKLAMLFEKAGTVEI 180

Query: 181 AEVIYNRETDRSRGFGFVTMSTVEEAEKAVDTFNRYDLSGRLLTVNKAAPRGSRQEREPR 240
           AEVIYNRETDRSRGFGFVTMSTVEEAEKAVDTFNRYDLSGRLLTVNKAAPRGSRQEREPR
Sbjct: 181 AEVIYNRETDRSRGFGFVTMSTVEEAEKAVDTFNRYDLSGRLLTVNKAAPRGSRQEREPR 240

Query: 241 PFQPTFRIYVGNLPWDVDNGRLEQLFSEHGKVVDARVLYDRDSGRSRGFGFVTMADETGM 300
           PFQPTFRIYVGNLPWDVDNGRLEQLFSEHGKVVDARVLYDRDSGRSRGFGFVTMADETGM
Sbjct: 241 PFQPTFRIYVGNLPWDVDNGRLEQLFSEHGKVVDARVLYDRDSGRSRGFGFVTMADETGM 300

Query: 301 NDAIAALDGQ 310
           NDAIAALDGQ
Sbjct: 301 NDAIAALDGQ 310

[Close]

BLAST of CsGy1G000930 vs. NCBI nr
Match: TYJ98491.1 (28 kDa ribonucleoprotein [Cucumis melo var. makuwa])

HSP 1 Score: 580 bits (1495), Expect = 1.15e-207
Identity = 295/310 (95.16%), Postives = 304/310 (98.06%), Query Frame = 0


Query: 1   MASSSATSLFKPLSKPDSCFLSLPSLFTGRPPHTFLSFPSKFIPFHLSSSSSYSSGFSPS 60
           MAS+SATSLFKPLSKPDSCFLSLPSLFTGRPPHTFLSFPSKFIPFHLSSSSS+SS F PS
Sbjct: 1   MASTSATSLFKPLSKPDSCFLSLPSLFTGRPPHTFLSFPSKFIPFHLSSSSSHSSCFYPS 60

Query: 61  KKKPHLPSVAQTSDWAQEDDTITIDPKLDNDENGGEEGGPHWENEELSETESRISDWEGE 120
           KKKPHLPSVAQTSDWAQEDDT+TIDPKLDNDE+  EEGGPHWENEELSETESRISDWEGE
Sbjct: 61  KKKPHLPSVAQTSDWAQEDDTMTIDPKLDNDEDAEEEGGPHWENEELSETESRISDWEGE 120

Query: 121 GEDGGSEAEVGGDEEEDEEGEQGPYEEPNEDAKLFVGNLPYDIDSEKLAMLFEKAGTVEI 180
           GEDGGSEAEVGGDEEE+EEGEQGPYEEPNEDAKLFVGNLPYDIDSEKLAMLFEKAGTVEI
Sbjct: 121 GEDGGSEAEVGGDEEEEEEGEQGPYEEPNEDAKLFVGNLPYDIDSEKLAMLFEKAGTVEI 180

Query: 181 AEVIYNRETDRSRGFGFVTMSTVEEAEKAVDTFNRYDLSGRLLTVNKAAPRGSRQEREPR 240
           AEVIYNRETDRSRGFGFVTMSTVEEAEKAVDTFNRY+LSGRLLTVNKAAPRG+RQER+PR
Sbjct: 181 AEVIYNRETDRSRGFGFVTMSTVEEAEKAVDTFNRYELSGRLLTVNKAAPRGTRQERQPR 240

Query: 241 PFQPTFRIYVGNLPWDVDNGRLEQLFSEHGKVVDARVLYDRDSGRSRGFGFVTMADETGM 300
           PFQP FRIYVGNLPWDVDN RLEQ+FSEHGKVVDARVLYDRDSGRSRGFGFVTMADETGM
Sbjct: 241 PFQPAFRIYVGNLPWDVDNARLEQVFSEHGKVVDARVLYDRDSGRSRGFGFVTMADETGM 300

Query: 301 NDAIAALDGQ 310
           NDAIAALDGQ
Sbjct: 301 NDAIAALDGQ 310

[Close]

BLAST of CsGy1G000930 vs. NCBI nr
Match: KAA0057807.1 (Ribonucleoprotein [Cucumis melo var. makuwa])

HSP 1 Score: 567 bits (1461), Expect = 1.80e-202
Identity = 294/312 (94.23%), Postives = 302/312 (96.79%), Query Frame = 0


Query: 1   MASSSATSLFKPLSKPDSCFLSLPSLFTGRPPHTFLSFPSKFIPFHLSSSSSYSSGFSPS 60
           MAS+SATSLFK LSKPDSCFLSLPSLFTGRPPHTFLSFPSKFIPFHLSSSSS+SS F PS
Sbjct: 1   MASTSATSLFKTLSKPDSCFLSLPSLFTGRPPHTFLSFPSKFIPFHLSSSSSHSSCFYPS 60

Query: 61  KKKPHLPSVAQTSDWAQEDDTITIDPKLDNDENGGEEGGPHWENEELSETESRISDWEGE 120
           KKKPHLPSVAQTSDWAQEDDT+TIDPKLDNDE+  EEGGPHWENEELSETESRISDWEGE
Sbjct: 61  KKKPHLPSVAQTSDWAQEDDTMTIDPKLDNDEDAEEEGGPHWENEELSETESRISDWEGE 120

Query: 121 GE--DGGSEAEVGGDEEEDEEGEQGPYEEPNEDAKLFVGNLPYDIDSEKLAMLFEKAGTV 180
           GE  DGGSEAEVGGDEEE EEGEQGPYEEPNEDAKLFVGNLPYDIDSEKLAMLFEKAGTV
Sbjct: 121 GEGEDGGSEAEVGGDEEE-EEGEQGPYEEPNEDAKLFVGNLPYDIDSEKLAMLFEKAGTV 180

Query: 181 EIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVDTFNRYDLSGRLLTVNKAAPRGSRQERE 240
           EIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVDTFNRY+LSGRLLTVNKAAPRG+RQER+
Sbjct: 181 EIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVDTFNRYELSGRLLTVNKAAPRGTRQERQ 240

Query: 241 PRPFQPTFRIYVGNLPWDVDNGRLEQLFSEHGKVVDARVLYDRDSGRSRGFGFVTMADET 300
           PRPFQP FRIYVGNLPWDVDN RLEQ+FSEHGKVVDARVLYDRDSGRSRGFGFVTMADET
Sbjct: 241 PRPFQPAFRIYVGNLPWDVDNARLEQVFSEHGKVVDARVLYDRDSGRSRGFGFVTMADET 300

Query: 301 GMNDAIAALDGQ 310
           GMNDAIAALDGQ
Sbjct: 301 GMNDAIAALDGQ 311

[Close]

BLAST of CsGy1G000930 vs. NCBI nr
Match: XP_038878997.1 (28 kDa ribonucleoprotein, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 507 bits (1306), Expect = 5.09e-179
Identity = 271/313 (86.58%), Postives = 285/313 (91.05%), Query Frame = 0


Query: 1   MASSSATSLFKPLSKPDSCFLSLPSLFTGRPPHTFLSFPSKFIPFHLSSSSSYSSGFSPS 60
           MAS+SATS+ KPLSKPDSCFLSLPSLFTGRPPHTFLSFPSKFIPF+LSSS  ++S FS S
Sbjct: 1   MASTSATSILKPLSKPDSCFLSLPSLFTGRPPHTFLSFPSKFIPFNLSSS--HTSLFSSS 60

Query: 61  KKKPHLPSVAQTSDWAQEDDTITIDPKLDNDENGGEEGGPHWENEELSETESRISDWEGE 120
           KKK HLPSVAQTSDWAQEDDTITIDPKL +DE    E GPHWEN+ELSETESRISDWEGE
Sbjct: 61  KKKTHLPSVAQTSDWAQEDDTITIDPKLGDDE--AAEEGPHWENQELSETESRISDWEGE 120

Query: 121 GE---DGGSEAEVGGDEEEDEEGEQGPYEEPNEDAKLFVGNLPYDIDSEKLAMLFEKAGT 180
            E   DGGSEAE  GDEEE      GPYEEPNEDAKLFVGNLPYD+DS+KLAMLFEKAGT
Sbjct: 121 AEGEDDGGSEAE--GDEEE------GPYEEPNEDAKLFVGNLPYDVDSQKLAMLFEKAGT 180

Query: 181 VEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVDTFNRYDLSGRLLTVNKAAPRGSRQER 240
           VEIAEVIYNRETD+SRGFGFVTMSTVEEAEKAVDTFNRY+LSGRLLTVNKAAPRGSR ER
Sbjct: 181 VEIAEVIYNRETDQSRGFGFVTMSTVEEAEKAVDTFNRYELSGRLLTVNKAAPRGSRPER 240

Query: 241 EPRPFQPTFRIYVGNLPWDVDNGRLEQLFSEHGKVVDARVLYDRDSGRSRGFGFVTMADE 300
           +PR FQP FRIYVGNLPWDVDN RLEQ+FSEHGKVV+ARVLYDRDSGRSRGFGFVTMADE
Sbjct: 241 QPRTFQPAFRIYVGNLPWDVDNARLEQVFSEHGKVVEARVLYDRDSGRSRGFGFVTMADE 300

Query: 301 TGMNDAIAALDGQ 310
           TGMNDAIAALDGQ
Sbjct: 301 TGMNDAIAALDGQ 301

[Close]

BLAST of CsGy1G000930 vs. NCBI nr
Match: XP_022134798.1 (28 kDa ribonucleoprotein, chloroplastic-like [Momordica charantia])

HSP 1 Score: 483 bits (1243), Expect = 3.41e-169
Identity = 261/318 (82.08%), Postives = 280/318 (88.05%), Query Frame = 0


Query: 1   MASSSATSLFKPLSKPDSCFLSLPSLFTGRPPHTFLSFPSKFIPFHLSSSSSYSSGFSPS 60
           MAS+SATS+ KPLSK DSC LSLPS+FT RPPH+FLSFPSK I FHLSSSS +SS FS S
Sbjct: 1   MASTSATSILKPLSKADSCLLSLPSVFTCRPPHSFLSFPSKLIRFHLSSSS-HSSPFSLS 60

Query: 61  KKKPHLPS----VAQTSDWAQEDDTITIDPKLDNDENGGEEGGPHWENEELSETESRISD 120
           KKKPH  S    VAQTSDWAQEDDTITIDPKL  DE   +E GPHWEN+ELSETESRISD
Sbjct: 61  KKKPHPSSLVSFVAQTSDWAQEDDTITIDPKLGGDEEEEDEQGPHWENQELSETESRISD 120

Query: 121 WEGEGEDGGSEAEVGGDEE----EDEEGEQGPYEEPNEDAKLFVGNLPYDIDSEKLAMLF 180
           WEGE EDGGSEAE G D E    E+EE E+G YEEPNEDAKLFVGNLPYD+DS+KLAM+F
Sbjct: 121 WEGEAEDGGSEAE-GEDGEGGLLEEEEEEEGSYEEPNEDAKLFVGNLPYDVDSQKLAMIF 180

Query: 181 EKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVDTFNRYDLSGRLLTVNKAAPRG 240
            KAGTVEIAEVIYNRETD+SRGFGFVTMSTVEEAEKAVDTFNRY+L GRLLTVNKAAPRG
Sbjct: 181 GKAGTVEIAEVIYNRETDQSRGFGFVTMSTVEEAEKAVDTFNRYELEGRLLTVNKAAPRG 240

Query: 241 SRQEREPRPFQPTFRIYVGNLPWDVDNGRLEQLFSEHGKVVDARVLYDRDSGRSRGFGFV 300
           +R ER PR FQ +FRIYVGNLPWDVDN RLEQ+FSEHGKVV+ARVLYDRD+GRSRGFGFV
Sbjct: 241 ARPERTPRTFQSSFRIYVGNLPWDVDNARLEQVFSEHGKVVEARVLYDRDTGRSRGFGFV 300

Query: 301 TMADETGMNDAIAALDGQ 310
           TMADETGMNDAIAALDGQ
Sbjct: 301 TMADETGMNDAIAALDGQ 316

[Close]

BLAST of CsGy1G000930 vs. ExPASy TrEMBL
Match: A0A0A0LNS8 (Ribonucleoprotein OS=Cucumis sativus OX=3659 GN=Csa_1G002890 PE=4 SV=1)

HSP 1 Score: 608 bits (1568), Expect = 6.16e-218
Identity = 310/310 (100.00%), Postives = 310/310 (100.00%), Query Frame = 0


Query: 1   MASSSATSLFKPLSKPDSCFLSLPSLFTGRPPHTFLSFPSKFIPFHLSSSSSYSSGFSPS 60
           MASSSATSLFKPLSKPDSCFLSLPSLFTGRPPHTFLSFPSKFIPFHLSSSSSYSSGFSPS
Sbjct: 74  MASSSATSLFKPLSKPDSCFLSLPSLFTGRPPHTFLSFPSKFIPFHLSSSSSYSSGFSPS 133

Query: 61  KKKPHLPSVAQTSDWAQEDDTITIDPKLDNDENGGEEGGPHWENEELSETESRISDWEGE 120
           KKKPHLPSVAQTSDWAQEDDTITIDPKLDNDENGGEEGGPHWENEELSETESRISDWEGE
Sbjct: 134 KKKPHLPSVAQTSDWAQEDDTITIDPKLDNDENGGEEGGPHWENEELSETESRISDWEGE 193

Query: 121 GEDGGSEAEVGGDEEEDEEGEQGPYEEPNEDAKLFVGNLPYDIDSEKLAMLFEKAGTVEI 180
           GEDGGSEAEVGGDEEEDEEGEQGPYEEPNEDAKLFVGNLPYDIDSEKLAMLFEKAGTVEI
Sbjct: 194 GEDGGSEAEVGGDEEEDEEGEQGPYEEPNEDAKLFVGNLPYDIDSEKLAMLFEKAGTVEI 253

Query: 181 AEVIYNRETDRSRGFGFVTMSTVEEAEKAVDTFNRYDLSGRLLTVNKAAPRGSRQEREPR 240
           AEVIYNRETDRSRGFGFVTMSTVEEAEKAVDTFNRYDLSGRLLTVNKAAPRGSRQEREPR
Sbjct: 254 AEVIYNRETDRSRGFGFVTMSTVEEAEKAVDTFNRYDLSGRLLTVNKAAPRGSRQEREPR 313

Query: 241 PFQPTFRIYVGNLPWDVDNGRLEQLFSEHGKVVDARVLYDRDSGRSRGFGFVTMADETGM 300
           PFQPTFRIYVGNLPWDVDNGRLEQLFSEHGKVVDARVLYDRDSGRSRGFGFVTMADETGM
Sbjct: 314 PFQPTFRIYVGNLPWDVDNGRLEQLFSEHGKVVDARVLYDRDSGRSRGFGFVTMADETGM 373

Query: 301 NDAIAALDGQ 310
           NDAIAALDGQ
Sbjct: 374 NDAIAALDGQ 383

[Close]

BLAST of CsGy1G000930 vs. ExPASy TrEMBL
Match: A0A5D3BIH5 (28 kDa ribonucleoprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold350G00930 PE=4 SV=1)

HSP 1 Score: 580 bits (1495), Expect = 5.56e-208
Identity = 295/310 (95.16%), Postives = 304/310 (98.06%), Query Frame = 0


Query: 1   MASSSATSLFKPLSKPDSCFLSLPSLFTGRPPHTFLSFPSKFIPFHLSSSSSYSSGFSPS 60
           MAS+SATSLFKPLSKPDSCFLSLPSLFTGRPPHTFLSFPSKFIPFHLSSSSS+SS F PS
Sbjct: 1   MASTSATSLFKPLSKPDSCFLSLPSLFTGRPPHTFLSFPSKFIPFHLSSSSSHSSCFYPS 60

Query: 61  KKKPHLPSVAQTSDWAQEDDTITIDPKLDNDENGGEEGGPHWENEELSETESRISDWEGE 120
           KKKPHLPSVAQTSDWAQEDDT+TIDPKLDNDE+  EEGGPHWENEELSETESRISDWEGE
Sbjct: 61  KKKPHLPSVAQTSDWAQEDDTMTIDPKLDNDEDAEEEGGPHWENEELSETESRISDWEGE 120

Query: 121 GEDGGSEAEVGGDEEEDEEGEQGPYEEPNEDAKLFVGNLPYDIDSEKLAMLFEKAGTVEI 180
           GEDGGSEAEVGGDEEE+EEGEQGPYEEPNEDAKLFVGNLPYDIDSEKLAMLFEKAGTVEI
Sbjct: 121 GEDGGSEAEVGGDEEEEEEGEQGPYEEPNEDAKLFVGNLPYDIDSEKLAMLFEKAGTVEI 180

Query: 181 AEVIYNRETDRSRGFGFVTMSTVEEAEKAVDTFNRYDLSGRLLTVNKAAPRGSRQEREPR 240
           AEVIYNRETDRSRGFGFVTMSTVEEAEKAVDTFNRY+LSGRLLTVNKAAPRG+RQER+PR
Sbjct: 181 AEVIYNRETDRSRGFGFVTMSTVEEAEKAVDTFNRYELSGRLLTVNKAAPRGTRQERQPR 240

Query: 241 PFQPTFRIYVGNLPWDVDNGRLEQLFSEHGKVVDARVLYDRDSGRSRGFGFVTMADETGM 300
           PFQP FRIYVGNLPWDVDN RLEQ+FSEHGKVVDARVLYDRDSGRSRGFGFVTMADETGM
Sbjct: 241 PFQPAFRIYVGNLPWDVDNARLEQVFSEHGKVVDARVLYDRDSGRSRGFGFVTMADETGM 300

Query: 301 NDAIAALDGQ 310
           NDAIAALDGQ
Sbjct: 301 NDAIAALDGQ 310

[Close]

BLAST of CsGy1G000930 vs. ExPASy TrEMBL
Match: A0A5A7USX4 (Ribonucleoprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G00900 PE=4 SV=1)

HSP 1 Score: 567 bits (1461), Expect = 8.74e-203
Identity = 294/312 (94.23%), Postives = 302/312 (96.79%), Query Frame = 0


Query: 1   MASSSATSLFKPLSKPDSCFLSLPSLFTGRPPHTFLSFPSKFIPFHLSSSSSYSSGFSPS 60
           MAS+SATSLFK LSKPDSCFLSLPSLFTGRPPHTFLSFPSKFIPFHLSSSSS+SS F PS
Sbjct: 1   MASTSATSLFKTLSKPDSCFLSLPSLFTGRPPHTFLSFPSKFIPFHLSSSSSHSSCFYPS 60

Query: 61  KKKPHLPSVAQTSDWAQEDDTITIDPKLDNDENGGEEGGPHWENEELSETESRISDWEGE 120
           KKKPHLPSVAQTSDWAQEDDT+TIDPKLDNDE+  EEGGPHWENEELSETESRISDWEGE
Sbjct: 61  KKKPHLPSVAQTSDWAQEDDTMTIDPKLDNDEDAEEEGGPHWENEELSETESRISDWEGE 120

Query: 121 GE--DGGSEAEVGGDEEEDEEGEQGPYEEPNEDAKLFVGNLPYDIDSEKLAMLFEKAGTV 180
           GE  DGGSEAEVGGDEEE EEGEQGPYEEPNEDAKLFVGNLPYDIDSEKLAMLFEKAGTV
Sbjct: 121 GEGEDGGSEAEVGGDEEE-EEGEQGPYEEPNEDAKLFVGNLPYDIDSEKLAMLFEKAGTV 180

Query: 181 EIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVDTFNRYDLSGRLLTVNKAAPRGSRQERE 240
           EIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVDTFNRY+LSGRLLTVNKAAPRG+RQER+
Sbjct: 181 EIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVDTFNRYELSGRLLTVNKAAPRGTRQERQ 240

Query: 241 PRPFQPTFRIYVGNLPWDVDNGRLEQLFSEHGKVVDARVLYDRDSGRSRGFGFVTMADET 300
           PRPFQP FRIYVGNLPWDVDN RLEQ+FSEHGKVVDARVLYDRDSGRSRGFGFVTMADET
Sbjct: 241 PRPFQPAFRIYVGNLPWDVDNARLEQVFSEHGKVVDARVLYDRDSGRSRGFGFVTMADET 300

Query: 301 GMNDAIAALDGQ 310
           GMNDAIAALDGQ
Sbjct: 301 GMNDAIAALDGQ 311

[Close]

BLAST of CsGy1G000930 vs. ExPASy TrEMBL
Match: A0A6J1C316 (28 kDa ribonucleoprotein, chloroplastic-like OS=Momordica charantia OX=3673 GN=LOC111006981 PE=4 SV=1)

HSP 1 Score: 483 bits (1243), Expect = 1.65e-169
Identity = 261/318 (82.08%), Postives = 280/318 (88.05%), Query Frame = 0


Query: 1   MASSSATSLFKPLSKPDSCFLSLPSLFTGRPPHTFLSFPSKFIPFHLSSSSSYSSGFSPS 60
           MAS+SATS+ KPLSK DSC LSLPS+FT RPPH+FLSFPSK I FHLSSSS +SS FS S
Sbjct: 1   MASTSATSILKPLSKADSCLLSLPSVFTCRPPHSFLSFPSKLIRFHLSSSS-HSSPFSLS 60

Query: 61  KKKPHLPS----VAQTSDWAQEDDTITIDPKLDNDENGGEEGGPHWENEELSETESRISD 120
           KKKPH  S    VAQTSDWAQEDDTITIDPKL  DE   +E GPHWEN+ELSETESRISD
Sbjct: 61  KKKPHPSSLVSFVAQTSDWAQEDDTITIDPKLGGDEEEEDEQGPHWENQELSETESRISD 120

Query: 121 WEGEGEDGGSEAEVGGDEE----EDEEGEQGPYEEPNEDAKLFVGNLPYDIDSEKLAMLF 180
           WEGE EDGGSEAE G D E    E+EE E+G YEEPNEDAKLFVGNLPYD+DS+KLAM+F
Sbjct: 121 WEGEAEDGGSEAE-GEDGEGGLLEEEEEEEGSYEEPNEDAKLFVGNLPYDVDSQKLAMIF 180

Query: 181 EKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVDTFNRYDLSGRLLTVNKAAPRG 240
            KAGTVEIAEVIYNRETD+SRGFGFVTMSTVEEAEKAVDTFNRY+L GRLLTVNKAAPRG
Sbjct: 181 GKAGTVEIAEVIYNRETDQSRGFGFVTMSTVEEAEKAVDTFNRYELEGRLLTVNKAAPRG 240

Query: 241 SRQEREPRPFQPTFRIYVGNLPWDVDNGRLEQLFSEHGKVVDARVLYDRDSGRSRGFGFV 300
           +R ER PR FQ +FRIYVGNLPWDVDN RLEQ+FSEHGKVV+ARVLYDRD+GRSRGFGFV
Sbjct: 241 ARPERTPRTFQSSFRIYVGNLPWDVDNARLEQVFSEHGKVVEARVLYDRDTGRSRGFGFV 300

Query: 301 TMADETGMNDAIAALDGQ 310
           TMADETGMNDAIAALDGQ
Sbjct: 301 TMADETGMNDAIAALDGQ 316

[Close]

BLAST of CsGy1G000930 vs. ExPASy TrEMBL
Match: A0A6J1JFY1 (28 kDa ribonucleoprotein, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111484771 PE=4 SV=1)

HSP 1 Score: 455 bits (1170), Expect = 2.04e-158
Identity = 252/319 (79.00%), Postives = 272/319 (85.27%), Query Frame = 0


Query: 1   MASSSATSLFKPLSKPDSCFLSLPSLFTGRPPHTFLSFPSKFI--PFHLSSSSSYSSGFS 60
           MASSSATS+ KPLSK DSC LSLPSLFT RPPH+FLSFPSKF   PFHLSSS   SS FS
Sbjct: 1   MASSSATSILKPLSKADSCLLSLPSLFTCRPPHSFLSFPSKFTTAPFHLSSSHC-SSLFS 60

Query: 61  PSKKKPHL----PSVAQTSDWAQEDDTITIDPKLDNDENGGEEGGPHWENEELSETESRI 120
            SKKK HL     SVAQ+S+W QEDDTITIDPKL  DE+G E  GPHWEN+ELSE ESRI
Sbjct: 61  SSKKKTHLLSLVASVAQSSEWGQEDDTITIDPKLSGDEDGEE--GPHWENQELSENESRI 120

Query: 121 SDWEGEGE---DGGSEAEVGGDEEEDEEGEQGPYEEPNEDAKLFVGNLPYDIDSEKLAML 180
           SDWEGEGE   DGGSE E GG  E  +E E+GP EEPNEDAKL+VGNL YD+DS+KLAML
Sbjct: 121 SDWEGEGEGEDDGGSEGEGGGVLELGDE-EEGPLEEPNEDAKLYVGNLSYDVDSQKLAML 180

Query: 181 FEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVDTFNRYDLSGRLLTVNKAAPR 240
           FEKAGTVEIAEVIY+R++DRSRGFGFVTMS+VEEAEKAVDTFNRY+  GR L VNKAA R
Sbjct: 181 FEKAGTVEIAEVIYDRQSDRSRGFGFVTMSSVEEAEKAVDTFNRYEFLGRTLVVNKAAAR 240

Query: 241 GSRQEREPRPFQPTFRIYVGNLPWDVDNGRLEQLFSEHGKVVDARVLYDRDSGRSRGFGF 300
           GSR ER+PR FQP FRIYVGNL W+VD+ RLEQ+FSEHGKVVDARVLYDRDSGRSRGFGF
Sbjct: 241 GSRPERQPRTFQPAFRIYVGNLAWEVDSARLEQVFSEHGKVVDARVLYDRDSGRSRGFGF 300

Query: 301 VTMADETGMNDAIAALDGQ 310
           VTMADETGMNDAIAALDGQ
Sbjct: 301 VTMADETGMNDAIAALDGQ 315

[Close]

BLAST of CsGy1G000930 vs. TAIR 10
Match: AT4G24770.1 (31-kDa RNA binding protein )

HSP 1 Score: 289.3 bits (739), Expect = 3.8e-78
Identity = 176/329 (53.50%), Postives = 219/329 (66.57%), Query Frame = 0


Query: 1   MASSSATSLFKPLSKPDSCFLSL-------------------PSLFTGRPPHTFLSFPSK 60
           MASS  TS  KPL+  DS   ++                    SL TGR     ++ P  
Sbjct: 1   MASSIVTSSLKPLAMADSSSSTIFSHPSISSTISSSRIRSSSVSLLTGR-----INLPLS 60

Query: 61  FIPFHLSSSSSYSSGFSPSKKKPHLPSVAQTSDWAQEDDTITIDPKLDNDENGGEEGGPH 120
           F    LS  +      +  KK P +  VAQTSDWA+E    ++   ++  EN        
Sbjct: 61  FSRVSLSLKTK-----THLKKSPFVSFVAQTSDWAEEGGEGSV--AVEETENS------- 120

Query: 121 WENEELSETESRISDWEGEGEDGGSEAEVGGDEEEDEEGEQGPYEEPNEDAKLFVGNLPY 180
            E++++SE +    D        G E+E  GD  E    E+  + EP+E+AKLFVGNL Y
Sbjct: 121 LESQDVSEGDESEGDASEGDVSEGDESE--GDVSEGAVSERAEFPEPSEEAKLFVGNLAY 180

Query: 181 DIDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVDTFNRYDLSGR 240
           D++S+ LAMLFE+AGTVEIAEVIYNRETD+SRGFGFVTMS+V+EAE AV+ FNRYDL+GR
Sbjct: 181 DVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEKFNRYDLNGR 240

Query: 241 LLTVNKAAPRGSRQEREPRPFQPTFRIYVGNLPWDVDNGRLEQLFSEHGKVVDARVLYDR 300
           LLTVNKAAPRGSR ER PR ++P FR+YVGNLPWDVDNGRLEQLFSEHGKVV+ARV+YDR
Sbjct: 241 LLTVNKAAPRGSRPERAPRVYEPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDR 300

Query: 301 DSGRSRGFGFVTMADETGMNDAIAALDGQ 311
           ++GRSRGFGFVTM+D   +N+AI+ALDGQ
Sbjct: 301 ETGRSRGFGFVTMSDVDELNEAISALDGQ 308

[Close]

BLAST of CsGy1G000930 vs. TAIR 10
Match: AT5G50250.1 (chloroplast RNA-binding protein 31B )

HSP 1 Score: 261.2 bits (666), Expect = 1.1e-69
Identity = 151/270 (55.93%), Postives = 186/270 (68.89%), Query Frame = 0


Query: 45  FHLSSSSSYSSGFSPSKKKPHLPSVAQTSDWAQEDDTITIDPKLDNDENGGEEGGPHWEN 104
           F++SSS S+   FS S +  +L    ++         +T   +  N           W  
Sbjct: 30  FNISSSESHRFNFSLSSRPVNLTLSLKSKTLRNSSPVVTFVSQTSN-----------WAE 89

Query: 105 EELSETESRISDWEGEGEDGGSEAEVGGDE---EEDEEGEQG-PYEEPNEDAKLFVGNLP 164
           EE             EGEDG     +GG     +E  E E G  + EP E+AKLFVGNLP
Sbjct: 90  EE-------------EGEDG----SIGGTSVTVDESFESEDGVGFPEPPEEAKLFVGNLP 149

Query: 165 YDIDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVDTFNRYDLSG 224
           YD+DS+ LAMLFE+AGTVEI+EVIYNR+TD+SRGFGFVTMSTVEEAEKAV+ FN ++++G
Sbjct: 150 YDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEKFNSFEVNG 209

Query: 225 RLLTVNKAAPRGSRQEREPRPFQPTFRIYVGNLPWDVDNGRLEQLFSEHGKVVDARVLYD 284
           R LTVN+AAPRGSR ER+PR +   FRIYVGNLPWDVD+GRLE+LFSEHGKVVDARV+ D
Sbjct: 210 RRLTVNRAAPRGSRPERQPRVYDAAFRIYVGNLPWDVDSGRLERLFSEHGKVVDARVVSD 269

Query: 285 RDSGRSRGFGFVTMADETGMNDAIAALDGQ 311
           R++GRSRGFGFV M++E  +N AIAALDGQ
Sbjct: 270 RETGRSRGFGFVQMSNENEVNVAIAALDGQ 271

[Close]

BLAST of CsGy1G000930 vs. TAIR 10
Match: AT2G37220.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 174.9 bits (442), Expect = 1.1e-43
Identity = 103/205 (50.24%), Postives = 127/205 (61.95%), Query Frame = 0


Query: 126 SEAEVGGDEEEDEEGEQGPYEEP--NEDAKLFVGNLPYDIDSEKLAMLFEKAGTVEIAEV 185
           SE EV    EED   +  P +E   + D KLFVGNLP+++DS +LA LFE AG VE+ EV
Sbjct: 67  SEFEV----EEDGFADVAPPKEQSFSADLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEV 126

Query: 186 IYNRETDRSRGFGFVTMSTVEEAEKAVDTFNRYDLSGRLLTVNKAAPRGSRQEREPRPFQ 245
           IY++ T RSRGFGFVTMS+V E E A   FN Y+L GR L VN   P   R++   R  +
Sbjct: 127 IYDKITGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRPLRVNAGPPPPKREDGFSRGPR 186

Query: 246 PTF-------------------RIYVGNLPWDVDNGRLEQLFSEHGKVVDARVLYDRDSG 305
            +F                   R+YVGNL W VD+  LE LFSE GKVV+ARV+YDRDSG
Sbjct: 187 SSFGSSGSGYGGGGGSGAGSGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSG 246

Query: 306 RSRGFGFVTMADETGMNDAIAALDG 310
           RS+GFGFVT      + +AI +LDG
Sbjct: 247 RSKGFGFVTYDSSQEVQNAIKSLDG 267

[Close]

BLAST of CsGy1G000930 vs. TAIR 10
Match: AT3G53460.1 (chloroplast RNA-binding protein 29 )

HSP 1 Score: 146.4 bits (368), Expect = 4.0e-35
Identity = 98/250 (39.20%), Postives = 123/250 (49.20%), Query Frame = 0


Query: 126 SEAEVGGDEEEDEEGEQGPYEEP--NEDAKLFVGNLPYDIDSEKLAMLFEKAGTVEIAEV 185
           S+ EV  D+   +  +  P E    + D KLFVGNL +++DS +LA LFE AG VE+ EV
Sbjct: 71  SDFEVEEDDMFADGDDSAPVERNSFSPDLKLFVGNLSFNVDSAQLAQLFESAGNVEMVEV 130

Query: 186 IYNRETDRSRGFGFVTMSTVEEAEKAVDTFNRYDLSGRLLTVNKAAPRGSRQE---REPR 245
           IY++ T RSRGFGFVTMST  E E A   FN Y+  GR L VN   P   R+E   R PR
Sbjct: 131 IYDKVTGRSRGFGFVTMSTAAEVEAAAQQFNGYEFEGRPLRVNAGPPPPKREESFSRGPR 190

Query: 246 P----------------------------------------------------------- 305
                                                                       
Sbjct: 191 SGGYGSERGGGYGSERGGGYGSERGGGYGSERGGGYGSQRSGGGYGGSQRSSYGSGSGSG 250

Query: 306 --FQPTFRIYVGNLPWDVDNGRLEQLFSEHGKVVDARVLYDRDSGRSRGFGFVTMADETG 310
                  R+YVGNL W VD+  LE LF+E GKVV+ARV+YDRDSGRS+GFGFVT++    
Sbjct: 251 SGSGSGNRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQE 310

[Close]

BLAST of CsGy1G000930 vs. TAIR 10
Match: AT3G53460.2 (chloroplast RNA-binding protein 29 )

HSP 1 Score: 146.4 bits (368), Expect = 4.0e-35
Identity = 98/250 (39.20%), Postives = 123/250 (49.20%), Query Frame = 0


Query: 126 SEAEVGGDEEEDEEGEQGPYEEP--NEDAKLFVGNLPYDIDSEKLAMLFEKAGTVEIAEV 185
           S+ EV  D+   +  +  P E    + D KLFVGNL +++DS +LA LFE AG VE+ EV
Sbjct: 71  SDFEVEEDDMFADGDDSAPVERNSFSPDLKLFVGNLSFNVDSAQLAQLFESAGNVEMVEV 130

Query: 186 IYNRETDRSRGFGFVTMSTVEEAEKAVDTFNRYDLSGRLLTVNKAAPRGSRQE---REPR 245
           IY++ T RSRGFGFVTMST  E E A   FN Y+  GR L VN   P   R+E   R PR
Sbjct: 131 IYDKVTGRSRGFGFVTMSTAAEVEAAAQQFNGYEFEGRPLRVNAGPPPPKREESFSRGPR 190

Query: 246 P----------------------------------------------------------- 305
                                                                       
Sbjct: 191 SGGYGSERGGGYGSERGGGYGSERGGGYGSERGGGYGSQRSGGGYGGSQRSSYGSGSGSG 250

Query: 306 --FQPTFRIYVGNLPWDVDNGRLEQLFSEHGKVVDARVLYDRDSGRSRGFGFVTMADETG 310
                  R+YVGNL W VD+  LE LF+E GKVV+ARV+YDRDSGRS+GFGFVT++    
Sbjct: 251 SGSGSGNRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQE 310

The following BLAST results are available for this feature:

BLAST of CsGy1G000930 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q04836	5.4e-77	53.50	31 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP31A...	[more]
P19683	3.6e-73	54.37	31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=1 SV=...	[more]
P19682	8.9e-72	53.74	28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=1 SV=...	[more]
P28644	1.2e-68	62.14	28 kDa ribonucleoprotein, chloroplastic OS=Spinacia oleracea OX=3562 PE=1 SV=1	[more]
Q9FGS0	1.6e-68	55.93	RNA-binding protein CP31B, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP31...	[more]

BLAST of CsGy1G000930 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004138078.1	8.62e-219	100.00	28 kDa ribonucleoprotein, chloroplastic [Cucumis sativus] >KAE8652388.1 hypothet...	[more]
TYJ98491.1	1.15e-207	95.16	28 kDa ribonucleoprotein [Cucumis melo var. makuwa]	[more]
KAA0057807.1	1.80e-202	94.23	Ribonucleoprotein [Cucumis melo var. makuwa]	[more]
XP_038878997.1	5.09e-179	86.58	28 kDa ribonucleoprotein, chloroplastic-like [Benincasa hispida]	[more]
XP_022134798.1	3.41e-169	82.08	28 kDa ribonucleoprotein, chloroplastic-like [Momordica charantia]	[more]

BLAST of CsGy1G000930 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LNS8	6.16e-218	100.00	Ribonucleoprotein OS=Cucumis sativus OX=3659 GN=Csa_1G002890 PE=4 SV=1	[more]
A0A5D3BIH5	5.56e-208	95.16	28 kDa ribonucleoprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A5A7USX4	8.74e-203	94.23	Ribonucleoprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G00...	[more]
A0A6J1C316	1.65e-169	82.08	28 kDa ribonucleoprotein, chloroplastic-like OS=Momordica charantia OX=3673 GN=L...	[more]
A0A6J1JFY1	2.04e-158	79.00	28 kDa ribonucleoprotein, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC1...	[more]

BLAST of CsGy1G000930 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G24770.1	3.8e-78	53.50	31-kDa RNA binding protein	[more]
AT5G50250.1	1.1e-69	55.93	chloroplast RNA-binding protein 31B	[more]
AT2G37220.1	1.1e-43	50.24	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G53460.1	4.0e-35	39.20	chloroplast RNA-binding protein 29	[more]
AT3G53460.2	4.0e-35	39.20	chloroplast RNA-binding protein 29	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 153..226 e-value: 1.4E-25 score: 101.0 coord: 247..317 e-value: 1.5E-20 score: 84.3
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 154..223 e-value: 3.7E-20 score: 71.5 coord: 248..310 e-value: 2.1E-18 score: 65.9
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 152..230 score: 18.54678
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 246..317 score: 16.977684
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 85..235 e-value: 4.8E-29 score: 103.3
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 236..313 e-value: 5.1E-23 score: 83.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 49..79
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 49..152
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 80..120
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 121..145
None	No IPR available	PANTHER	PTHR48025	OS02G0815200 PROTEIN	coord: 1..311
None	No IPR available	PANTHER	PTHR48025:SF8	RIBONUCLEOPROTEIN	coord: 1..311
None	No IPR available	CDD	cd12399	RRM_HP0827_like	coord: 153..230 e-value: 1.21514E-35 score: 121.952
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 148..310

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy1G000930.2	CsGy1G000930.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:1901259	chloroplast rRNA processing
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003676	nucleic acid binding