CsGy1G000885 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy1G000885
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	Transducin/WD40 repeat-like superfamily protein
Location	Gy14Chr1: 515865 .. 516200 (+)
RNA-Seq Expression	CsGy1G000885
Synteny	CsGy1G000885

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTTTCGGGGAGCAGTGATCGTTCGATAATGGTGTGGAAGAAAGAAGATGGTGGGAAGAAGATTTCGTTTGTGGAGGATTTATGGGGTCATCAAGGCGCTGTATTGTGCTTGTATACTTTTCGAGACTTATTAGTTAGTGGGTCGGAAGATAGGACACTCAGGATTTGGAGAGGTGATGTTACAAATGGTTACCGATGTACGACTGTGGTCGATGGACACAGGTCGCCGGTGAAGTCGTTGGTTTTGGTTTCCGTCGAAGATGGTGAACGGAGTTTGATGATCTGTAGTGCTAGCTTGGATGGAGAAATACGAGTTTGGAGTTCCAAGCTTTGA

mRNA sequence

ATGTTTTCGGGGAGCAGTGATCGTTCGATAATGGTGTGGAAGAAAGAAGATGGTGGGAAGAAGATTTCGTTTGTGGAGGATTTATGGGGTCATCAAGGCGCTGTATTGTGCTTGTATACTTTTCGAGACTTATTAGTTAGTGGGTCGGAAGATAGGACACTCAGGATTTGGAGAGGTGATGTTACAAATGGTTACCGATGTACGACTGTGGTCGATGGACACAGGTCGCCGGTGAAGTCGTTGGTTTTGGTTTCCGTCGAAGATGGTGAACGGAGTTTGATGATCTGTAGTGCTAGCTTGGATGGAGAAATACGAGTTTGGAGTTCCAAGCTTTGA

Coding sequence (CDS)

ATGTTTTCGGGGAGCAGTGATCGTTCGATAATGGTGTGGAAGAAAGAAGATGGTGGGAAGAAGATTTCGTTTGTGGAGGATTTATGGGGTCATCAAGGCGCTGTATTGTGCTTGTATACTTTTCGAGACTTATTAGTTAGTGGGTCGGAAGATAGGACACTCAGGATTTGGAGAGGTGATGTTACAAATGGTTACCGATGTACGACTGTGGTCGATGGACACAGGTCGCCGGTGAAGTCGTTGGTTTTGGTTTCCGTCGAAGATGGTGAACGGAGTTTGATGATCTGTAGTGCTAGCTTGGATGGAGAAATACGAGTTTGGAGTTCCAAGCTTTGA

Protein sequence

MFSGSSDRSIMVWKKEDGGKKISFVEDLWGHQGAVLCLYTFRDLLVSGSEDRTLRIWRGDVTNGYRCTTVVDGHRSPVKSLVLVSVEDGERSLMICSASLDGEIRVWSSKL*

Homology

[Close]

BLAST of CsGy1G000885 vs. ExPASy Swiss-Prot
Match: O48716 (Protein JINGUBANG OS=Arabidopsis thaliana OX=3702 GN=JGB PE=1 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 3.7e-12
Identity = 39/111 (35.14%), Postives = 65/111 (58.56%), Query Frame = 0


Query: 1   MFSGSSDRSIMVWKKEDGGKKISFVEDLWGHQGAVLCLYTFRDLLVSGSEDRTLRIWRGD 60
           ++ GSSD  +  W++E   K++++   L GH+ AVLCL     L+ SGS D+T+ +W+ D
Sbjct: 310 VYFGSSDGLVNFWERE---KQLNYGGILKGHKLAVLCLEVAGSLVFSGSADKTICVWKRD 369

Query: 61  VTNGYRCTTVVDGHRSPVKSLVL----VSVEDGERSLMICSASLDGEIRVW 108
             N + C +V+ GH  PVK L +     + E  ++  ++ S SLD  ++VW
Sbjct: 370 -GNIHTCLSVLTGHTGPVKCLAVEADREASERRDKKWIVYSGSLDKSVKVW 416

[Close]

BLAST of CsGy1G000885 vs. ExPASy Swiss-Prot
Match: Q61FW2 (F-box/WD repeat-containing protein sel-10 OS=Caenorhabditis briggsae OX=6238 GN=sel-10 PE=3 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 1.5e-10
Identity = 42/107 (39.25%), Postives = 60/107 (56.07%), Query Frame = 0


Query: 1   MFSGSSDRSIMVWKKEDGGKKISFVEDLWGHQGAVLCLYTFRDLLVSGSEDRTLRIWRGD 60
           + +GS D ++ VW  E G      V  L GHQ AV C+    +++VSG  D T++IW  D
Sbjct: 353 LVTGSRDCTLRVWDIETG----LHVRTLQGHQAAVRCVQFDGNIVVSGGYDFTVKIW--D 412

Query: 61  VTNGYRCTTVVDGHRSPVKSLVLVSVEDGERSLMICSASLDGEIRVW 108
             +G +C   + GH + V SL+     + ERS+ +CS SLD  IRVW
Sbjct: 413 AFSG-KCLRTLIGHSNRVYSLLY----ESERSI-VCSGSLDTSIRVW 447

[Close]

BLAST of CsGy1G000885 vs. ExPASy Swiss-Prot
Match: Q93794 (F-box/WD repeat-containing protein sel-10 OS=Caenorhabditis elegans OX=6239 GN=sel-10 PE=1 SV=3)

HSP 1 Score: 67.0 bits (162), Expect = 1.5e-10
Identity = 46/142 (32.39%), Postives = 62/142 (43.66%), Query Frame = 0


Query: 3   SGSSDRSIMVWKKEDGGKKISFVEDLWGHQGAVLCLYTFRDLLVSGSEDRTLRIWRGD-- 62
           SGS+DR++ VW   DG    S +  L GH   V C+     +LV+GS D TLR+W  +  
Sbjct: 313 SGSTDRTVKVWSTVDG----SLLHTLQGHTSTVRCMAMAGSILVTGSRDTTLRVWDVESG 372

Query: 63  -----------------------VTNGY------------RCTTVVDGHRSPVKSLVLVS 108
                                  V+ GY            RC   + GH + V SL+   
Sbjct: 373 RHLATLHGHHAAVRCVQFDGTTVVSGGYDFTVKIWNAHTGRCIRTLTGHNNRVYSLLF-- 432

[Close]

BLAST of CsGy1G000885 vs. ExPASy Swiss-Prot
Match: F1MNN4 (F-box/WD repeat-containing protein 7 OS=Bos taurus OX=9913 GN=FBXW7 PE=1 SV=3)

HSP 1 Score: 65.1 bits (157), Expect = 5.8e-10
Identity = 37/107 (34.58%), Postives = 57/107 (53.27%), Query Frame = 0


Query: 1   MFSGSSDRSIMVWKKEDGGKKISFVEDLWGHQGAVLCLYTFRDLLVSGSEDRTLRIWRGD 60
           + SGS+DR++ VW  E G      +  L+GH   V C++     +VSGS D TLR+W  D
Sbjct: 433 IISGSTDRTLKVWNAETG----ECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVW--D 492

Query: 61  VTNGYRCTTVVDGHRSPVKSLVLVSVEDGERSLMICSASLDGEIRVW 108
           +  G +C  V+ GH + V+ +      DG R   + S + D  ++VW
Sbjct: 493 IETG-QCLHVLMGHVAAVRCVQY----DGRR---VVSGAYDFMVKVW 525

[Close]

BLAST of CsGy1G000885 vs. ExPASy Swiss-Prot
Match: Q969H0 (F-box/WD repeat-containing protein 7 OS=Homo sapiens OX=9606 GN=FBXW7 PE=1 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 5.8e-10
Identity = 37/107 (34.58%), Postives = 57/107 (53.27%), Query Frame = 0


Query: 1   MFSGSSDRSIMVWKKEDGGKKISFVEDLWGHQGAVLCLYTFRDLLVSGSEDRTLRIWRGD 60
           + SGS+DR++ VW  E G      +  L+GH   V C++     +VSGS D TLR+W  D
Sbjct: 434 IISGSTDRTLKVWNAETG----ECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVW--D 493

Query: 61  VTNGYRCTTVVDGHRSPVKSLVLVSVEDGERSLMICSASLDGEIRVW 108
           +  G +C  V+ GH + V+ +      DG R   + S + D  ++VW
Sbjct: 494 IETG-QCLHVLMGHVAAVRCVQY----DGRR---VVSGAYDFMVKVW 526

[Close]

BLAST of CsGy1G000885 vs. NCBI nr
Match: XP_004138262.2 (protein JINGUBANG [Cucumis sativus] >KAE8652387.1 hypothetical protein Csa_013987 [Cucumis sativus])

HSP 1 Score: 229 bits (584), Expect = 2.13e-72
Identity = 111/111 (100.00%), Postives = 111/111 (100.00%), Query Frame = 0


Query: 1   MFSGSSDRSIMVWKKEDGGKKISFVEDLWGHQGAVLCLYTFRDLLVSGSEDRTLRIWRGD 60
           MFSGSSDRSIMVWKKEDGGKKISFVEDLWGHQGAVLCLYTFRDLLVSGSEDRTLRIWRGD
Sbjct: 247 MFSGSSDRSIMVWKKEDGGKKISFVEDLWGHQGAVLCLYTFRDLLVSGSEDRTLRIWRGD 306

Query: 61  VTNGYRCTTVVDGHRSPVKSLVLVSVEDGERSLMICSASLDGEIRVWSSKL 111
           VTNGYRCTTVVDGHRSPVKSLVLVSVEDGERSLMICSASLDGEIRVWSSKL
Sbjct: 307 VTNGYRCTTVVDGHRSPVKSLVLVSVEDGERSLMICSASLDGEIRVWSSKL 357

[Close]

BLAST of CsGy1G000885 vs. NCBI nr
Match: TYJ98486.1 (vegetative incompatibility protein HET-E-1-like [Cucumis melo var. makuwa])

HSP 1 Score: 220 bits (561), Expect = 2.31e-69
Identity = 106/111 (95.50%), Postives = 109/111 (98.20%), Query Frame = 0


Query: 1   MFSGSSDRSIMVWKKEDGGKKISFVEDLWGHQGAVLCLYTFRDLLVSGSEDRTLRIWRGD 60
           MFSGSSDRSIMVWKKEDGGKKISFVEDLWGHQGAVLCLYTFRDLLVSGSEDRTLRIWRG+
Sbjct: 212 MFSGSSDRSIMVWKKEDGGKKISFVEDLWGHQGAVLCLYTFRDLLVSGSEDRTLRIWRGE 271

Query: 61  VTNGYRCTTVVDGHRSPVKSLVLVSVEDGERSLMICSASLDGEIRVWSSKL 111
           VTNGY CT+V+DGHRSPVKSLVLVSVEDGERS MICSASLDGEIRVWSSKL
Sbjct: 272 VTNGYVCTSVMDGHRSPVKSLVLVSVEDGERSFMICSASLDGEIRVWSSKL 322

[Close]

BLAST of CsGy1G000885 vs. NCBI nr
Match: XP_008464566.1 (PREDICTED: vegetative incompatibility protein HET-E-1-like [Cucumis melo])

HSP 1 Score: 220 bits (561), Expect = 4.77e-69
Identity = 106/111 (95.50%), Postives = 109/111 (98.20%), Query Frame = 0


Query: 1   MFSGSSDRSIMVWKKEDGGKKISFVEDLWGHQGAVLCLYTFRDLLVSGSEDRTLRIWRGD 60
           MFSGSSDRSIMVWKKEDGGKKISFVEDLWGHQGAVLCLYTFRDLLVSGSEDRTLRIWRG+
Sbjct: 237 MFSGSSDRSIMVWKKEDGGKKISFVEDLWGHQGAVLCLYTFRDLLVSGSEDRTLRIWRGE 296

Query: 61  VTNGYRCTTVVDGHRSPVKSLVLVSVEDGERSLMICSASLDGEIRVWSSKL 111
           VTNGY CT+V+DGHRSPVKSLVLVSVEDGERS MICSASLDGEIRVWSSKL
Sbjct: 297 VTNGYVCTSVMDGHRSPVKSLVLVSVEDGERSFMICSASLDGEIRVWSSKL 347

[Close]

BLAST of CsGy1G000885 vs. NCBI nr
Match: KAA0057802.1 (vegetative incompatibility protein HET-E-1-like [Cucumis melo var. makuwa])

HSP 1 Score: 219 bits (557), Expect = 9.31e-69
Identity = 105/111 (94.59%), Postives = 109/111 (98.20%), Query Frame = 0


Query: 1   MFSGSSDRSIMVWKKEDGGKKISFVEDLWGHQGAVLCLYTFRDLLVSGSEDRTLRIWRGD 60
           MFSGSSDRSIMVWKKEDGGKKISFVEDLWGHQGAVLCLYTFRDLLVSGSEDRTLRIWRG+
Sbjct: 212 MFSGSSDRSIMVWKKEDGGKKISFVEDLWGHQGAVLCLYTFRDLLVSGSEDRTLRIWRGE 271

Query: 61  VTNGYRCTTVVDGHRSPVKSLVLVSVEDGERSLMICSASLDGEIRVWSSKL 111
           VTNG+ CT+V+DGHRSPVKSLVLVSVEDGERS MICSASLDGEIRVWSSKL
Sbjct: 272 VTNGFVCTSVMDGHRSPVKSLVLVSVEDGERSFMICSASLDGEIRVWSSKL 322

[Close]

BLAST of CsGy1G000885 vs. NCBI nr
Match: XP_022921824.1 (protein JINGUBANG-like [Cucurbita moschata])

HSP 1 Score: 186 bits (473), Expect = 7.14e-56
Identity = 89/111 (80.18%), Postives = 100/111 (90.09%), Query Frame = 0


Query: 1   MFSGSSDRSIMVWKKEDGGKKISFVEDLWGHQGAVLCLYTFRDLLVSGSEDRTLRIWRGD 60
           MFSGSSDRSIMVWKK++ GK+I FVE LWGH+GAVLCLY+ RDLLVSGSEDRT+RIWRGD
Sbjct: 231 MFSGSSDRSIMVWKKDEAGKQIGFVEALWGHEGAVLCLYSVRDLLVSGSEDRTVRIWRGD 290

Query: 61  VTNGYRCTTVVDGHRSPVKSLVLVSVEDGERSLMICSASLDGEIRVWSSKL 111
           VTNGY+CT V++GHRSPVKSLV+V    GER LMICSASLDGEIRVWS +L
Sbjct: 291 VTNGYQCTAVMEGHRSPVKSLVVVGA--GERCLMICSASLDGEIRVWSLRL 339

[Close]

BLAST of CsGy1G000885 vs. ExPASy TrEMBL
Match: A0A0A0LNS4 (WD_REPEATS_REGION domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G002840 PE=4 SV=1)

HSP 1 Score: 229 bits (584), Expect = 6.87e-73
Identity = 111/111 (100.00%), Postives = 111/111 (100.00%), Query Frame = 0


Query: 1   MFSGSSDRSIMVWKKEDGGKKISFVEDLWGHQGAVLCLYTFRDLLVSGSEDRTLRIWRGD 60
           MFSGSSDRSIMVWKKEDGGKKISFVEDLWGHQGAVLCLYTFRDLLVSGSEDRTLRIWRGD
Sbjct: 233 MFSGSSDRSIMVWKKEDGGKKISFVEDLWGHQGAVLCLYTFRDLLVSGSEDRTLRIWRGD 292

Query: 61  VTNGYRCTTVVDGHRSPVKSLVLVSVEDGERSLMICSASLDGEIRVWSSKL 111
           VTNGYRCTTVVDGHRSPVKSLVLVSVEDGERSLMICSASLDGEIRVWSSKL
Sbjct: 293 VTNGYRCTTVVDGHRSPVKSLVLVSVEDGERSLMICSASLDGEIRVWSSKL 343

[Close]

BLAST of CsGy1G000885 vs. ExPASy TrEMBL
Match: A0A5D3BHF9 (Vegetative incompatibility protein HET-E-1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold350G00880 PE=4 SV=1)

HSP 1 Score: 220 bits (561), Expect = 1.12e-69
Identity = 106/111 (95.50%), Postives = 109/111 (98.20%), Query Frame = 0


Query: 1   MFSGSSDRSIMVWKKEDGGKKISFVEDLWGHQGAVLCLYTFRDLLVSGSEDRTLRIWRGD 60
           MFSGSSDRSIMVWKKEDGGKKISFVEDLWGHQGAVLCLYTFRDLLVSGSEDRTLRIWRG+
Sbjct: 212 MFSGSSDRSIMVWKKEDGGKKISFVEDLWGHQGAVLCLYTFRDLLVSGSEDRTLRIWRGE 271

Query: 61  VTNGYRCTTVVDGHRSPVKSLVLVSVEDGERSLMICSASLDGEIRVWSSKL 111
           VTNGY CT+V+DGHRSPVKSLVLVSVEDGERS MICSASLDGEIRVWSSKL
Sbjct: 272 VTNGYVCTSVMDGHRSPVKSLVLVSVEDGERSFMICSASLDGEIRVWSSKL 322

[Close]

BLAST of CsGy1G000885 vs. ExPASy TrEMBL
Match: A0A1S3CNB8 (vegetative incompatibility protein HET-E-1-like OS=Cucumis melo OX=3656 GN=LOC103502407 PE=4 SV=1)

HSP 1 Score: 220 bits (561), Expect = 2.31e-69
Identity = 106/111 (95.50%), Postives = 109/111 (98.20%), Query Frame = 0


Query: 1   MFSGSSDRSIMVWKKEDGGKKISFVEDLWGHQGAVLCLYTFRDLLVSGSEDRTLRIWRGD 60
           MFSGSSDRSIMVWKKEDGGKKISFVEDLWGHQGAVLCLYTFRDLLVSGSEDRTLRIWRG+
Sbjct: 237 MFSGSSDRSIMVWKKEDGGKKISFVEDLWGHQGAVLCLYTFRDLLVSGSEDRTLRIWRGE 296

Query: 61  VTNGYRCTTVVDGHRSPVKSLVLVSVEDGERSLMICSASLDGEIRVWSSKL 111
           VTNGY CT+V+DGHRSPVKSLVLVSVEDGERS MICSASLDGEIRVWSSKL
Sbjct: 297 VTNGYVCTSVMDGHRSPVKSLVLVSVEDGERSFMICSASLDGEIRVWSSKL 347

[Close]

BLAST of CsGy1G000885 vs. ExPASy TrEMBL
Match: A0A5A7UPL5 (Vegetative incompatibility protein HET-E-1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G00850 PE=4 SV=1)

HSP 1 Score: 219 bits (557), Expect = 4.51e-69
Identity = 105/111 (94.59%), Postives = 109/111 (98.20%), Query Frame = 0


Query: 1   MFSGSSDRSIMVWKKEDGGKKISFVEDLWGHQGAVLCLYTFRDLLVSGSEDRTLRIWRGD 60
           MFSGSSDRSIMVWKKEDGGKKISFVEDLWGHQGAVLCLYTFRDLLVSGSEDRTLRIWRG+
Sbjct: 212 MFSGSSDRSIMVWKKEDGGKKISFVEDLWGHQGAVLCLYTFRDLLVSGSEDRTLRIWRGE 271

Query: 61  VTNGYRCTTVVDGHRSPVKSLVLVSVEDGERSLMICSASLDGEIRVWSSKL 111
           VTNG+ CT+V+DGHRSPVKSLVLVSVEDGERS MICSASLDGEIRVWSSKL
Sbjct: 272 VTNGFVCTSVMDGHRSPVKSLVLVSVEDGERSFMICSASLDGEIRVWSSKL 322

[Close]

BLAST of CsGy1G000885 vs. ExPASy TrEMBL
Match: A0A6J1E1M7 (protein JINGUBANG-like OS=Cucurbita moschata OX=3662 GN=LOC111429962 PE=4 SV=1)

HSP 1 Score: 186 bits (473), Expect = 3.46e-56
Identity = 89/111 (80.18%), Postives = 100/111 (90.09%), Query Frame = 0


Query: 1   MFSGSSDRSIMVWKKEDGGKKISFVEDLWGHQGAVLCLYTFRDLLVSGSEDRTLRIWRGD 60
           MFSGSSDRSIMVWKK++ GK+I FVE LWGH+GAVLCLY+ RDLLVSGSEDRT+RIWRGD
Sbjct: 231 MFSGSSDRSIMVWKKDEAGKQIGFVEALWGHEGAVLCLYSVRDLLVSGSEDRTVRIWRGD 290

Query: 61  VTNGYRCTTVVDGHRSPVKSLVLVSVEDGERSLMICSASLDGEIRVWSSKL 111
           VTNGY+CT V++GHRSPVKSLV+V    GER LMICSASLDGEIRVWS +L
Sbjct: 291 VTNGYQCTAVMEGHRSPVKSLVVVGA--GERCLMICSASLDGEIRVWSLRL 339

[Close]

BLAST of CsGy1G000885 vs. TAIR 10
Match: AT1G24530.1 (Transducin/WD40 repeat-like superfamily protein )

HSP 1 Score: 106.3 bits (264), Expect = 1.6e-23
Identity = 50/107 (46.73%), Postives = 68/107 (63.55%), Query Frame = 0


Query: 1   MFSGSSDRSIMVWKKEDGGKKISFVEDLWGHQGAVLCLYTFRDLLVSGSEDRTLRIWRGD 60
           +FSGS DRSI+VW++ED    ++    L GH  A+L L+   DLL+SGS DRT+RIWR  
Sbjct: 295 LFSGSCDRSILVWEREDTSNYMAVRGALRGHDKAILSLFNVSDLLLSGSADRTVRIWRRG 354

Query: 61  VTNGYRCTTVVDGHRSPVKSLVLVSVEDGERSLMICSASLDGEIRVW 108
             + Y C  V+ GH  PVKSL  V  ++ +  + I S SLDGE++ W
Sbjct: 355 PDSSYSCLEVLSGHTKPVKSLAAVREKELDDVVSIISGSLDGEVKCW 401

[Close]

BLAST of CsGy1G000885 vs. TAIR 10
Match: AT1G24130.1 (Transducin/WD40 repeat-like superfamily protein )

HSP 1 Score: 94.0 bits (232), Expect = 8.3e-20
Identity = 50/121 (41.32%), Postives = 76/121 (62.81%), Query Frame = 0


Query: 1   MFSGSSDRSIMVWKK----EDGGKKISFVEDLWGHQGAVLCLYTFRDLLVSGSEDRTLRI 60
           ++SG+ DRSI+VW++    +D    +S V  L GH+ A++CL    DL++SGS D++LR+
Sbjct: 293 LYSGACDRSILVWERLINGDDEELHMSVVGALRGHRKAIMCLAVASDLVLSGSADKSLRV 352

Query: 61  WRGDV--TNGYRCTTVVDGHRSPVKSLVLVSVEDGER----SLMICSASLDGEIRVWSSK 112
           WR  +    GY C  V++GH  PVKSL  VSV D +     S M+ S SLD  ++VW+ +
Sbjct: 353 WRRGLMEKEGYSCLAVLEGHTKPVKSLA-VSVSDSDSNSDYSCMVYSGSLDLSLKVWNLR 412

[Close]

BLAST of CsGy1G000885 vs. TAIR 10
Match: AT5G50120.1 (Transducin/WD40 repeat-like superfamily protein )

HSP 1 Score: 85.9 bits (211), Expect = 2.3e-17
Identity = 46/110 (41.82%), Postives = 65/110 (59.09%), Query Frame = 0


Query: 1   MFSGSSDRSIMVWKKEDGGKKISFVEDLWGHQGAVLCLYTFRDLLVSGSEDRTLRIWRGD 60
           + SG SD SI+VW+++DGG  I  V  L GH  +VLCL    D+L SGS D+T+R+W+  
Sbjct: 275 LHSGGSDGSILVWERDDGG-DIVVVGMLRGHTESVLCLAVVSDILCSGSADKTVRLWKCS 334

Query: 61  VTNGYRCTTVVDGHRSPVKSLVLV---SVEDGERSLMICSASLDGEIRVW 108
             + Y C  +++GH  PVK L      S +  E S  I S  LD +++VW
Sbjct: 335 AKD-YSCLAMLEGHLGPVKCLTGAFRDSRKADEASYHIYSGGLDSQVKVW 382

[Close]

BLAST of CsGy1G000885 vs. TAIR 10
Match: AT4G34380.1 (Transducin/WD40 repeat-like superfamily protein )

HSP 1 Score: 76.6 bits (187), Expect = 1.4e-14
Identity = 44/120 (36.67%), Postives = 67/120 (55.83%), Query Frame = 0


Query: 1   MFSGSSDRSIMVWKKEDGGKKISFVED-LWGHQGAVLCLYTFRDLLVSGSEDRTLRIWRG 60
           ++ GSSD  +  W++     K SF    L GH+ AVLCL    +LL+SGS D+ + +WR 
Sbjct: 339 VYCGSSDGLVNYWER----SKRSFTGGILKGHKSAVLCLGIAGNLLLSGSADKNICVWRR 398

Query: 61  DVTN-GYRCTTVVDGHRSPVKSLVL-----------VSVEDGERSLMICSASLDGEIRVW 108
           D ++  ++C +V+ GH  PVK L +            SV +G+R  +I S SLD  ++VW
Sbjct: 399 DPSDKSHQCLSVLTGHMGPVKCLAVEEERACHQGAKASVAEGDRKWIIYSGSLDKSVKVW 454

[Close]

BLAST of CsGy1G000885 vs. TAIR 10
Match: AT3G50390.1 (Transducin/WD40 repeat-like superfamily protein )

HSP 1 Score: 73.9 bits (180), Expect = 8.9e-14
Identity = 39/111 (35.14%), Postives = 64/111 (57.66%), Query Frame = 0


Query: 1   MFSGSSDRSIMVWKKEDGGKKISFVEDLWGHQGAVLCLYTFRDLLVSGSEDRTLRIWRGD 60
           ++ GSSD ++  W++E+  K    ++   GH+ AVLCL    +L+ SGS D  +R+WR  
Sbjct: 315 VYCGSSDGTVNFWERENNMKNGGVLK---GHKLAVLCLVAAGNLMFSGSADLGIRVWRRP 374

Query: 61  VTNG-YRCTTVVDGHRSPVKSLVLVSVED---GERSLMICSASLDGEIRVW 108
              G + C +V+ GH  PVK L +   ++   GER  ++ S SLD  +++W
Sbjct: 375 EGGGEHVCLSVLTGHAGPVKCLAVERDQESVSGERRWIVYSGSLDRSVKMW 422

The following BLAST results are available for this feature:

BLAST of CsGy1G000885 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O48716	3.7e-12	35.14	Protein JINGUBANG OS=Arabidopsis thaliana OX=3702 GN=JGB PE=1 SV=1	[more]
Q61FW2	1.5e-10	39.25	F-box/WD repeat-containing protein sel-10 OS=Caenorhabditis briggsae OX=6238 GN=...	[more]
Q93794	1.5e-10	32.39	F-box/WD repeat-containing protein sel-10 OS=Caenorhabditis elegans OX=6239 GN=s...	[more]
F1MNN4	5.8e-10	34.58	F-box/WD repeat-containing protein 7 OS=Bos taurus OX=9913 GN=FBXW7 PE=1 SV=3	[more]
Q969H0	5.8e-10	34.58	F-box/WD repeat-containing protein 7 OS=Homo sapiens OX=9606 GN=FBXW7 PE=1 SV=1	[more]

BLAST of CsGy1G000885 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004138262.2	2.13e-72	100.00	protein JINGUBANG [Cucumis sativus] >KAE8652387.1 hypothetical protein Csa_01398...	[more]
TYJ98486.1	2.31e-69	95.50	vegetative incompatibility protein HET-E-1-like [Cucumis melo var. makuwa]	[more]
XP_008464566.1	4.77e-69	95.50	PREDICTED: vegetative incompatibility protein HET-E-1-like [Cucumis melo]	[more]
KAA0057802.1	9.31e-69	94.59	vegetative incompatibility protein HET-E-1-like [Cucumis melo var. makuwa]	[more]
XP_022921824.1	7.14e-56	80.18	protein JINGUBANG-like [Cucurbita moschata]	[more]

BLAST of CsGy1G000885 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LNS4	6.87e-73	100.00	WD_REPEATS_REGION domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G...	[more]
A0A5D3BHF9	1.12e-69	95.50	Vegetative incompatibility protein HET-E-1-like OS=Cucumis melo var. makuwa OX=1...	[more]
A0A1S3CNB8	2.31e-69	95.50	vegetative incompatibility protein HET-E-1-like OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A5A7UPL5	4.51e-69	94.59	Vegetative incompatibility protein HET-E-1-like OS=Cucumis melo var. makuwa OX=1...	[more]
A0A6J1E1M7	3.46e-56	80.18	protein JINGUBANG-like OS=Cucurbita moschata OX=3662 GN=LOC111429962 PE=4 SV=1	[more]

BLAST of CsGy1G000885 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G24530.1	1.6e-23	46.73	Transducin/WD40 repeat-like superfamily protein	[more]
AT1G24130.1	8.3e-20	41.32	Transducin/WD40 repeat-like superfamily protein	[more]
AT5G50120.1	2.3e-17	41.82	Transducin/WD40 repeat-like superfamily protein	[more]
AT4G34380.1	1.4e-14	36.67	Transducin/WD40 repeat-like superfamily protein	[more]
AT3G50390.1	8.9e-14	35.14	Transducin/WD40 repeat-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR020472	G-protein beta WD-40 repeat	PRINTS	PR00320	GPROTEINBRPT	coord: 95..109 score: 31.38 coord: 1..13 score: 32.19 coord: 45..59 score: 37.79
IPR001680	WD40 repeat	SMART	SM00320	WD40_4	coord: 64..108 e-value: 0.3 score: 20.2 coord: 21..58 e-value: 5.8E-4 score: 29.2
IPR001680	WD40 repeat	PFAM	PF00400	WD40	coord: 30..57 e-value: 2.7E-4 score: 21.6 coord: 66..108 e-value: 0.008 score: 17.0
IPR001680	WD40 repeat	PROSITE	PS50082	WD_REPEATS_2	coord: 71..111 score: 8.536777
IPR001680	WD40 repeat	PROSITE	PS50082	WD_REPEATS_2	coord: 28..57 score: 10.374778
IPR001680	WD40 repeat	PROSITE	PS50082	WD_REPEATS_2	coord: 1..14 score: 8.870959
IPR015943	WD40/YVTN repeat-like-containing domain superfamily	GENE3D	2.130.10.10		coord: 1..111 e-value: 2.0E-20 score: 75.0
None	No IPR available	PANTHER	PTHR22844:SF324	TRANSDUCIN/WD40 REPEAT PROTEIN	coord: 1..108
None	No IPR available	PANTHER	PTHR22844	F-BOX AND WD40 DOMAIN PROTEIN	coord: 1..108
None	No IPR available	PROSITE	PS50294	WD_REPEATS_REGION	coord: 28..57 score: 8.729241
None	No IPR available	PROSITE	PS50294	WD_REPEATS_REGION	coord: 71..111 score: 8.597424
IPR036322	WD40-repeat-containing domain superfamily	SUPERFAMILY	50978	WD40 repeat-like	coord: 2..108

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy1G000885.1	CsGy1G000885.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0016491	oxidoreductase activity
molecular_function	GO:0005515	protein binding