CsGy1G000540 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy1G000540
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	protein indeterminate-domain 16
Location	Gy14Chr1: 291790 .. 292542 (-)
RNA-Seq Expression	CsGy1G000540
Synteny	CsGy1G000540

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGTACTCAAAGAAAAAAGAGAAAAGAAAAAAGAAAAAAAGAGAGAAAAAAAAAGGAAAACCAATCTCCCTTTTTATTTGTATCTTCAGAAATGGAAGATGAAGATCAGAAAGAGTTACAGCTTCTTCCAACACCACACTCCATAGCATCTTCGTCGACGTCCCACATATCGTCTCGTCCATCTGACTCCTCCTCGTTACGGTTCCGTTCCGATCCATTATTCGAAGCAGGATCAGGAGGATCGGTGGACCTACAGCTATCAATAAGTCTAAGGCCAATCCGGCCAGTAACGGCAGGGGGGGCGGAGTGCTTGTTCAAGTATGAGGAGGTGATGAAGCCTGAGGCAGCGAGCTGTGTGGACGCGCTCAAGTGGCAAGCGGCGGAGCAAATTCGGCTGGCGGCGATGGAAAAGGCGTATGCTGAGAGAGTTAGAGAACTGACAAAGAGGGAAATAGAACTGGCTCAAACGGAATTTGCTAGGGCAAGGCAGATGTGGGAAAGAGCAAGAGAAGAAGTTGAGAAAGCTGAAAGAATGAAAGAAAGAGCTACTCGTCAAATGGATTCTACGTGCATGGAGATCACTTGCCAATCTTGCAGGCAGAGGTTTCGGCCTTCTTAATTATTATCTTTAATCATAATTTTACCTCATTAATTACCCCTTTCCATTTCCCTTAATTATCCAGAGTTTCTTTTAGTTAAATCTCTGCTTGGGTCTGTTTTCTTTTTTCTTTTTAATTAATCATTTAAATCAAGT

mRNA sequence

TGTACTCAAAGAAAAAAGAGAAAAGAAAAAAGAAAAAAAGAGAGAAAAAAAAAGGAAAACCAATCTCCCTTTTTATTTGTATCTTCAGAAATGGAAGATGAAGATCAGAAAGAGTTACAGCTTCTTCCAACACCACACTCCATAGCATCTTCGTCGACGTCCCACATATCGTCTCGTCCATCTGACTCCTCCTCGTTACGGTTCCGTTCCGATCCATTATTCGAAGCAGGATCAGGAGGATCGGTGGACCTACAGCTATCAATAAGTCTAAGGCCAATCCGGCCAGTAACGGCAGGGGGGGCGGAGTGCTTGTTCAAGTATGAGGAGGTGATGAAGCCTGAGGCAGCGAGCTGTGTGGACGCGCTCAAGTGGCAAGCGGCGGAGCAAATTCGGCTGGCGGCGATGGAAAAGGCGTATGCTGAGAGAGTTAGAGAACTGACAAAGAGGGAAATAGAACTGGCTCAAACGGAATTTGCTAGGGCAAGGCAGATGTGGGAAAGAGCAAGAGAAGAAGTTGAGAAAGCTGAAAGAATGAAAGAAAGAGCTACTCGTCAAATGGATTCTACGTGCATGGAGATCACTTGCCAATCTTGCAGGCAGAGGTTTCGGCCTTCTTAATTATTATCTTTAATCATAATTTTACCTCATTAATTACCCCTTTCCATTTCCCTTAATTATCCAGAGTTTCTTTTAGTTAAATCTCTGCTTGGGTCTGTTTTCTTTTTTCTTTTTAATTAATCATTTAAATCAAGT

Coding sequence (CDS)

ATGGAAGATGAAGATCAGAAAGAGTTACAGCTTCTTCCAACACCACACTCCATAGCATCTTCGTCGACGTCCCACATATCGTCTCGTCCATCTGACTCCTCCTCGTTACGGTTCCGTTCCGATCCATTATTCGAAGCAGGATCAGGAGGATCGGTGGACCTACAGCTATCAATAAGTCTAAGGCCAATCCGGCCAGTAACGGCAGGGGGGGCGGAGTGCTTGTTCAAGTATGAGGAGGTGATGAAGCCTGAGGCAGCGAGCTGTGTGGACGCGCTCAAGTGGCAAGCGGCGGAGCAAATTCGGCTGGCGGCGATGGAAAAGGCGTATGCTGAGAGAGTTAGAGAACTGACAAAGAGGGAAATAGAACTGGCTCAAACGGAATTTGCTAGGGCAAGGCAGATGTGGGAAAGAGCAAGAGAAGAAGTTGAGAAAGCTGAAAGAATGAAAGAAAGAGCTACTCGTCAAATGGATTCTACGTGCATGGAGATCACTTGCCAATCTTGCAGGCAGAGGTTTCGGCCTTCTTAA

Protein sequence

MEDEDQKELQLLPTPHSIASSSTSHISSRPSDSSSLRFRSDPLFEAGSGGSVDLQLSISLRPIRPVTAGGAECLFKYEEVMKPEAASCVDALKWQAAEQIRLAAMEKAYAERVRELTKREIELAQTEFARARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFRPS*

Homology

[Close]

BLAST of CsGy1G000540 vs. ExPASy Swiss-Prot
Match: F4IPE3 (Zinc finger protein SHOOT GRAVITROPISM 5 OS=Arabidopsis thaliana OX=3702 GN=SGR5 PE=1 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 7.8e-09
Identity = 33/79 (41.77%), Postives = 61/79 (77.22%), Query Frame = 0


Query: 96  AAEQI-RLAAMEKAYAERVRELTKREIELAQTEFARARQMWERAREEVEKAERMKERATR 155
           A+EQI ++A  EKAYAE  +   KR+ E+A+ EFA A+++ ++A+ E+E+A+ +KE++ +
Sbjct: 335 ASEQIMKIAMKEKAYAEEAKREAKRQREIAENEFANAKKIRQKAQAELERAKFLKEQSMK 394

Query: 156 QMDSTCMEITCQSCRQRFR 174
           ++ ST M++TCQ+C+ +F+
Sbjct: 395 KISSTIMQVTCQTCKGQFQ 413

[Close]

BLAST of CsGy1G000540 vs. ExPASy Swiss-Prot
Match: Q9C9X7 (Protein indeterminate-domain 14 OS=Arabidopsis thaliana OX=3702 GN=IDD14 PE=1 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 9.5e-07
Identity = 28/63 (44.44%), Postives = 45/63 (71.43%), Query Frame = 0


Query: 111 ERVRELTKREIELAQTEFARARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQ 170
           E  R  TKR+IE+A+ EFA A+++ + AR E+ KA   +E A+R++ +T M+ITC +C+Q
Sbjct: 315 EEARRETKRQIEIAELEFAEAKRIRQHARAELHKAHLFREEASRRISATMMQITCHNCKQ 374

Query: 171 RFR 174
            F+
Sbjct: 375 HFQ 377

[Close]

BLAST of CsGy1G000540 vs. ExPASy Swiss-Prot
Match: Q9FRH4 (Protein indeterminate-domain 16 OS=Arabidopsis thaliana OX=3702 GN=IDD16 PE=2 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 9.5e-07
Identity = 29/68 (42.65%), Postives = 49/68 (72.06%), Query Frame = 0


Query: 106 EKAYAERVRELTKREIELAQTEFARARQMWERAREEVEKAERMKERATRQMDSTCMEITC 165
           E   AE  R+  KR+IE+A+ +F +A+++ E A+ E+EKA  ++E A +++++T MEITC
Sbjct: 268 EARKAEETRQEAKRQIEMAEKDFEKAKRIREEAKTELEKAHVVREEAIKRINATMMEITC 327

Query: 166 QSCRQRFR 174
            SC+Q F+
Sbjct: 328 HSCKQLFQ 335

[Close]

BLAST of CsGy1G000540 vs. NCBI nr
Match: XP_004138047.1 (protein indeterminate-domain 16 [Cucumis sativus])

HSP 1 Score: 326 bits (835), Expect = 5.39e-112
Identity = 175/175 (100.00%), Postives = 175/175 (100.00%), Query Frame = 0


Query: 1   MEDEDQKELQLLPTPHSIASSSTSHISSRPSDSSSLRFRSDPLFEAGSGGSVDLQLSISL 60
           MEDEDQKELQLLPTPHSIASSSTSHISSRPSDSSSLRFRSDPLFEAGSGGSVDLQLSISL
Sbjct: 1   MEDEDQKELQLLPTPHSIASSSTSHISSRPSDSSSLRFRSDPLFEAGSGGSVDLQLSISL 60

Query: 61  RPIRPVTAGGAECLFKYEEVMKPEAASCVDALKWQAAEQIRLAAMEKAYAERVRELTKRE 120
           RPIRPVTAGGAECLFKYEEVMKPEAASCVDALKWQAAEQIRLAAMEKAYAERVRELTKRE
Sbjct: 61  RPIRPVTAGGAECLFKYEEVMKPEAASCVDALKWQAAEQIRLAAMEKAYAERVRELTKRE 120

Query: 121 IELAQTEFARARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFRPS 175
           IELAQTEFARARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFRPS
Sbjct: 121 IELAQTEFARARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFRPS 175

[Close]

BLAST of CsGy1G000540 vs. NCBI nr
Match: KAE8652381.1 (hypothetical protein Csa_014379 [Cucumis sativus])

HSP 1 Score: 315 bits (808), Expect = 2.07e-107
Identity = 170/170 (100.00%), Postives = 170/170 (100.00%), Query Frame = 0


Query: 1   MEDEDQKELQLLPTPHSIASSSTSHISSRPSDSSSLRFRSDPLFEAGSGGSVDLQLSISL 60
           MEDEDQKELQLLPTPHSIASSSTSHISSRPSDSSSLRFRSDPLFEAGSGGSVDLQLSISL
Sbjct: 1   MEDEDQKELQLLPTPHSIASSSTSHISSRPSDSSSLRFRSDPLFEAGSGGSVDLQLSISL 60

Query: 61  RPIRPVTAGGAECLFKYEEVMKPEAASCVDALKWQAAEQIRLAAMEKAYAERVRELTKRE 120
           RPIRPVTAGGAECLFKYEEVMKPEAASCVDALKWQAAEQIRLAAMEKAYAERVRELTKRE
Sbjct: 61  RPIRPVTAGGAECLFKYEEVMKPEAASCVDALKWQAAEQIRLAAMEKAYAERVRELTKRE 120

Query: 121 IELAQTEFARARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQ 170
           IELAQTEFARARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQ
Sbjct: 121 IELAQTEFARARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQ 170

[Close]

BLAST of CsGy1G000540 vs. NCBI nr
Match: XP_008464429.1 (PREDICTED: protein indeterminate-domain 16 [Cucumis melo] >TYJ98452.1 protein indeterminate-domain 16 [Cucumis melo var. makuwa])

HSP 1 Score: 298 bits (764), Expect = 3.12e-101
Identity = 169/175 (96.57%), Postives = 171/175 (97.71%), Query Frame = 0


Query: 1   MEDEDQKELQLLPTPHSIASSSTSHISSRPSDSSSLRFRSDPLFEAGSGGSVDLQLSISL 60
           MEDEDQKELQLLPTPHSIASSS SH+SSRPSDSS LRFRSDP FEAGSGGSVDLQLSISL
Sbjct: 1   MEDEDQKELQLLPTPHSIASSS-SHMSSRPSDSS-LRFRSDP-FEAGSGGSVDLQLSISL 60

Query: 61  RPIRPVTAGGAECLFKYEEVMKPEAASCVDALKWQAAEQIRLAAMEKAYAERVRELTKRE 120
           RPIRPVTAGG ECLFKYEEVMKPEAASCV+ALKWQAAEQIRLAAMEKAYAERVRELTKRE
Sbjct: 61  RPIRPVTAGG-ECLFKYEEVMKPEAASCVEALKWQAAEQIRLAAMEKAYAERVRELTKRE 120

Query: 121 IELAQTEFARARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFRPS 175
           IELAQTEFARARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFRPS
Sbjct: 121 IELAQTEFARARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFRPS 171

[Close]

BLAST of CsGy1G000540 vs. NCBI nr
Match: KAA0057771.1 (protein indeterminate-domain 16 [Cucumis melo var. makuwa])

HSP 1 Score: 297 bits (760), Expect = 1.27e-100
Identity = 168/175 (96.00%), Postives = 171/175 (97.71%), Query Frame = 0


Query: 1   MEDEDQKELQLLPTPHSIASSSTSHISSRPSDSSSLRFRSDPLFEAGSGGSVDLQLSISL 60
           MEDEDQKELQLLPTPHSIASSS SH+SSRPSDSS LRFRSDP FEAGSGGSVDLQLSISL
Sbjct: 1   MEDEDQKELQLLPTPHSIASSS-SHMSSRPSDSS-LRFRSDP-FEAGSGGSVDLQLSISL 60

Query: 61  RPIRPVTAGGAECLFKYEEVMKPEAASCVDALKWQAAEQIRLAAMEKAYAERVRELTKRE 120
           RPIRPVTAGG ECLFKYEEVMKPEAASCV+ALKWQAAEQIRLAA+EKAYAERVRELTKRE
Sbjct: 61  RPIRPVTAGG-ECLFKYEEVMKPEAASCVEALKWQAAEQIRLAAIEKAYAERVRELTKRE 120

Query: 121 IELAQTEFARARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFRPS 175
           IELAQTEFARARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFRPS
Sbjct: 121 IELAQTEFARARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFRPS 171

[Close]

BLAST of CsGy1G000540 vs. NCBI nr
Match: XP_038878928.1 (protein indeterminate-domain 16 [Benincasa hispida])

HSP 1 Score: 279 bits (714), Expect = 1.17e-93
Identity = 161/175 (92.00%), Postives = 163/175 (93.14%), Query Frame = 0


Query: 1   MEDEDQKELQLLPTPHSIASSSTSHISSRPSDSSSLRFRSDPLFEAGSGGSVDLQLSISL 60
           MEDEDQKELQLLPTPHSIASSS SH+SSRPSDSS LRFRSD  FEA   GSVDLQLSISL
Sbjct: 1   MEDEDQKELQLLPTPHSIASSS-SHMSSRPSDSS-LRFRSDA-FEAAGPGSVDLQLSISL 60

Query: 61  RPIRPVTAGGAECLFKYEEVMKPEAASCVDALKWQAAEQIRLAAMEKAYAERVRELTKRE 120
           RPIRP     AECLFKYEEVMKPEAASCV+ALKWQAAEQIRLAAMEKAYAERVRELTKRE
Sbjct: 61  RPIRPA----AECLFKYEEVMKPEAASCVEALKWQAAEQIRLAAMEKAYAERVRELTKRE 120

Query: 121 IELAQTEFARARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFRPS 175
           IELAQTEFARARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFRPS
Sbjct: 121 IELAQTEFARARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFRPS 168

[Close]

BLAST of CsGy1G000540 vs. ExPASy TrEMBL
Match: A0A0A0LRS8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G001530 PE=4 SV=1)

HSP 1 Score: 326 bits (835), Expect = 2.61e-112
Identity = 175/175 (100.00%), Postives = 175/175 (100.00%), Query Frame = 0


Query: 1   MEDEDQKELQLLPTPHSIASSSTSHISSRPSDSSSLRFRSDPLFEAGSGGSVDLQLSISL 60
           MEDEDQKELQLLPTPHSIASSSTSHISSRPSDSSSLRFRSDPLFEAGSGGSVDLQLSISL
Sbjct: 1   MEDEDQKELQLLPTPHSIASSSTSHISSRPSDSSSLRFRSDPLFEAGSGGSVDLQLSISL 60

Query: 61  RPIRPVTAGGAECLFKYEEVMKPEAASCVDALKWQAAEQIRLAAMEKAYAERVRELTKRE 120
           RPIRPVTAGGAECLFKYEEVMKPEAASCVDALKWQAAEQIRLAAMEKAYAERVRELTKRE
Sbjct: 61  RPIRPVTAGGAECLFKYEEVMKPEAASCVDALKWQAAEQIRLAAMEKAYAERVRELTKRE 120

Query: 121 IELAQTEFARARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFRPS 175
           IELAQTEFARARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFRPS
Sbjct: 121 IELAQTEFARARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFRPS 175

[Close]

BLAST of CsGy1G000540 vs. ExPASy TrEMBL
Match: A0A5D3BFD1 (Protein indeterminate-domain 16 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold350G00530 PE=4 SV=1)

HSP 1 Score: 298 bits (764), Expect = 1.51e-101
Identity = 169/175 (96.57%), Postives = 171/175 (97.71%), Query Frame = 0


Query: 1   MEDEDQKELQLLPTPHSIASSSTSHISSRPSDSSSLRFRSDPLFEAGSGGSVDLQLSISL 60
           MEDEDQKELQLLPTPHSIASSS SH+SSRPSDSS LRFRSDP FEAGSGGSVDLQLSISL
Sbjct: 1   MEDEDQKELQLLPTPHSIASSS-SHMSSRPSDSS-LRFRSDP-FEAGSGGSVDLQLSISL 60

Query: 61  RPIRPVTAGGAECLFKYEEVMKPEAASCVDALKWQAAEQIRLAAMEKAYAERVRELTKRE 120
           RPIRPVTAGG ECLFKYEEVMKPEAASCV+ALKWQAAEQIRLAAMEKAYAERVRELTKRE
Sbjct: 61  RPIRPVTAGG-ECLFKYEEVMKPEAASCVEALKWQAAEQIRLAAMEKAYAERVRELTKRE 120

Query: 121 IELAQTEFARARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFRPS 175
           IELAQTEFARARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFRPS
Sbjct: 121 IELAQTEFARARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFRPS 171

[Close]

BLAST of CsGy1G000540 vs. ExPASy TrEMBL
Match: A0A1S3CN02 (protein indeterminate-domain 16 OS=Cucumis melo OX=3656 GN=LOC103502321 PE=4 SV=1)

HSP 1 Score: 298 bits (764), Expect = 1.51e-101
Identity = 169/175 (96.57%), Postives = 171/175 (97.71%), Query Frame = 0


Query: 1   MEDEDQKELQLLPTPHSIASSSTSHISSRPSDSSSLRFRSDPLFEAGSGGSVDLQLSISL 60
           MEDEDQKELQLLPTPHSIASSS SH+SSRPSDSS LRFRSDP FEAGSGGSVDLQLSISL
Sbjct: 1   MEDEDQKELQLLPTPHSIASSS-SHMSSRPSDSS-LRFRSDP-FEAGSGGSVDLQLSISL 60

Query: 61  RPIRPVTAGGAECLFKYEEVMKPEAASCVDALKWQAAEQIRLAAMEKAYAERVRELTKRE 120
           RPIRPVTAGG ECLFKYEEVMKPEAASCV+ALKWQAAEQIRLAAMEKAYAERVRELTKRE
Sbjct: 61  RPIRPVTAGG-ECLFKYEEVMKPEAASCVEALKWQAAEQIRLAAMEKAYAERVRELTKRE 120

Query: 121 IELAQTEFARARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFRPS 175
           IELAQTEFARARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFRPS
Sbjct: 121 IELAQTEFARARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFRPS 171

[Close]

BLAST of CsGy1G000540 vs. ExPASy TrEMBL
Match: A0A5A7UWD1 (Protein indeterminate-domain 16 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G00540 PE=4 SV=1)

HSP 1 Score: 297 bits (760), Expect = 6.16e-101
Identity = 168/175 (96.00%), Postives = 171/175 (97.71%), Query Frame = 0


Query: 1   MEDEDQKELQLLPTPHSIASSSTSHISSRPSDSSSLRFRSDPLFEAGSGGSVDLQLSISL 60
           MEDEDQKELQLLPTPHSIASSS SH+SSRPSDSS LRFRSDP FEAGSGGSVDLQLSISL
Sbjct: 1   MEDEDQKELQLLPTPHSIASSS-SHMSSRPSDSS-LRFRSDP-FEAGSGGSVDLQLSISL 60

Query: 61  RPIRPVTAGGAECLFKYEEVMKPEAASCVDALKWQAAEQIRLAAMEKAYAERVRELTKRE 120
           RPIRPVTAGG ECLFKYEEVMKPEAASCV+ALKWQAAEQIRLAA+EKAYAERVRELTKRE
Sbjct: 61  RPIRPVTAGG-ECLFKYEEVMKPEAASCVEALKWQAAEQIRLAAIEKAYAERVRELTKRE 120

Query: 121 IELAQTEFARARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFRPS 175
           IELAQTEFARARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFRPS
Sbjct: 121 IELAQTEFARARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFRPS 171

[Close]

BLAST of CsGy1G000540 vs. ExPASy TrEMBL
Match: A0A6J1E4S8 (protein indeterminate-domain 16-like OS=Cucurbita moschata OX=3662 GN=LOC111429927 PE=4 SV=1)

HSP 1 Score: 267 bits (683), Expect = 3.11e-89
Identity = 154/176 (87.50%), Postives = 164/176 (93.18%), Query Frame = 0


Query: 1   MEDEDQKELQLLPTPHSIASSSTS-HISSRPSDSSSLRFRSDPLFEAGSGGSVDLQLSIS 60
           MEDEDQKELQLLPTPH+IASSS+S H+SSRPS +SS+RFRSDP +EAG G S+DLQLSIS
Sbjct: 1   MEDEDQKELQLLPTPHTIASSSSSSHMSSRPS-ASSMRFRSDP-YEAGPG-SLDLQLSIS 60

Query: 61  LRPIRPVTAGGAECLFKYEEVMKPEAASCVDALKWQAAEQIRLAAMEKAYAERVRELTKR 120
           +RPIRP     AEC+FKYEEVMKPEAASCV+ALKWQAAEQIRLAAMEKAYAERVRELTKR
Sbjct: 61  VRPIRPT----AECVFKYEEVMKPEAASCVEALKWQAAEQIRLAAMEKAYAERVRELTKR 120

Query: 121 EIELAQTEFARARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFRPS 175
           EIELAQTEF RARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFR S
Sbjct: 121 EIELAQTEFGRARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFRAS 169

[Close]

BLAST of CsGy1G000540 vs. TAIR 10
Match: AT3G48550.1 (BEST Arabidopsis thaliana protein match is: C2H2-like zinc finger protein (TAIR:AT2G01940.3); Has 78 Blast hits to 78 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 78; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 139.4 bits (350), Expect = 2.7e-33
Identity = 93/177 (52.54%), Postives = 117/177 (66.10%), Query Frame = 0


Query: 2   EDEDQKELQLLPTPHSIASSSTSHISSRP----SDSSSLRFRSDPLFEAGSGGSVDLQLS 61
           + +  KELQLLP+P S  S    H   RP    +D  +   RS  +        +DL+LS
Sbjct: 4   QQDHHKELQLLPSPPSTESPVRKH---RPTVITTDHHNNHHRSSSMIH----HDLDLKLS 63

Query: 62  ISLRPIRPVTAGGAECLFKYEEVMKPEAASCVDALKWQAAEQIRLAAMEKAYAERVRELT 121
           ISL  I              EE+  P     V+ALKWQAAEQIRLAA+EKAYAERVRELT
Sbjct: 64  ISLSSISTA-----------EEL--PNGG--VEALKWQAAEQIRLAAIEKAYAERVRELT 123

Query: 122 KREIELAQTEFARARQMWERAREEVEKAERMKERATRQMDSTCMEITCQSCRQRFRP 175
           +RE+E+AQ+EFARAR MW++AREEVE+AER+KER+  ++D+ C+EITC SCRQRFRP
Sbjct: 124 RREMEMAQSEFARARVMWQKAREEVERAERLKERSMTKIDTACLEITCHSCRQRFRP 158

[Close]

BLAST of CsGy1G000540 vs. TAIR 10
Match: AT2G01940.1 (C2H2-like zinc finger protein )

HSP 1 Score: 62.0 bits (149), Expect = 5.5e-10
Identity = 33/79 (41.77%), Postives = 61/79 (77.22%), Query Frame = 0


Query: 96  AAEQI-RLAAMEKAYAERVRELTKREIELAQTEFARARQMWERAREEVEKAERMKERATR 155
           A+EQI ++A  EKAYAE  +   KR+ E+A+ EFA A+++ ++A+ E+E+A+ +KE++ +
Sbjct: 335 ASEQIMKIAMKEKAYAEEAKREAKRQREIAENEFANAKKIRQKAQAELERAKFLKEQSMK 394

Query: 156 QMDSTCMEITCQSCRQRFR 174
           ++ ST M++TCQ+C+ +F+
Sbjct: 395 KISSTIMQVTCQTCKGQFQ 413

[Close]

BLAST of CsGy1G000540 vs. TAIR 10
Match: AT2G01940.2 (C2H2-like zinc finger protein )

HSP 1 Score: 62.0 bits (149), Expect = 5.5e-10
Identity = 33/79 (41.77%), Postives = 61/79 (77.22%), Query Frame = 0


Query: 96  AAEQI-RLAAMEKAYAERVRELTKREIELAQTEFARARQMWERAREEVEKAERMKERATR 155
           A+EQI ++A  EKAYAE  +   KR+ E+A+ EFA A+++ ++A+ E+E+A+ +KE++ +
Sbjct: 246 ASEQIMKIAMKEKAYAEEAKREAKRQREIAENEFANAKKIRQKAQAELERAKFLKEQSMK 305

Query: 156 QMDSTCMEITCQSCRQRFR 174
           ++ ST M++TCQ+C+ +F+
Sbjct: 306 KISSTIMQVTCQTCKGQFQ 324

[Close]

BLAST of CsGy1G000540 vs. TAIR 10
Match: AT2G01940.3 (C2H2-like zinc finger protein )

HSP 1 Score: 62.0 bits (149), Expect = 5.5e-10
Identity = 33/79 (41.77%), Postives = 61/79 (77.22%), Query Frame = 0


Query: 96  AAEQI-RLAAMEKAYAERVRELTKREIELAQTEFARARQMWERAREEVEKAERMKERATR 155
           A+EQI ++A  EKAYAE  +   KR+ E+A+ EFA A+++ ++A+ E+E+A+ +KE++ +
Sbjct: 336 ASEQIMKIAMKEKAYAEEAKREAKRQREIAENEFANAKKIRQKAQAELERAKFLKEQSMK 395

Query: 156 QMDSTCMEITCQSCRQRFR 174
           ++ ST M++TCQ+C+ +F+
Sbjct: 396 KISSTIMQVTCQTCKGQFQ 414

[Close]

BLAST of CsGy1G000540 vs. TAIR 10
Match: AT1G25250.1 (indeterminate(ID)-domain 16 )

HSP 1 Score: 55.1 bits (131), Expect = 6.7e-08
Identity = 29/68 (42.65%), Postives = 49/68 (72.06%), Query Frame = 0


Query: 106 EKAYAERVRELTKREIELAQTEFARARQMWERAREEVEKAERMKERATRQMDSTCMEITC 165
           E   AE  R+  KR+IE+A+ +F +A+++ E A+ E+EKA  ++E A +++++T MEITC
Sbjct: 268 EARKAEETRQEAKRQIEMAEKDFEKAKRIREEAKTELEKAHVVREEAIKRINATMMEITC 327

Query: 166 QSCRQRFR 174
            SC+Q F+
Sbjct: 328 HSCKQLFQ 335

The following BLAST results are available for this feature:

BLAST of CsGy1G000540 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
F4IPE3	7.8e-09	41.77	Zinc finger protein SHOOT GRAVITROPISM 5 OS=Arabidopsis thaliana OX=3702 GN=SGR5...	[more]
Q9C9X7	9.5e-07	44.44	Protein indeterminate-domain 14 OS=Arabidopsis thaliana OX=3702 GN=IDD14 PE=1 SV...	[more]
Q9FRH4	9.5e-07	42.65	Protein indeterminate-domain 16 OS=Arabidopsis thaliana OX=3702 GN=IDD16 PE=2 SV...	[more]

BLAST of CsGy1G000540 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004138047.1	5.39e-112	100.00	protein indeterminate-domain 16 [Cucumis sativus]	[more]
KAE8652381.1	2.07e-107	100.00	hypothetical protein Csa_014379 [Cucumis sativus]	[more]
XP_008464429.1	3.12e-101	96.57	PREDICTED: protein indeterminate-domain 16 [Cucumis melo] >TYJ98452.1 protein in...	[more]
KAA0057771.1	1.27e-100	96.00	protein indeterminate-domain 16 [Cucumis melo var. makuwa]	[more]
XP_038878928.1	1.17e-93	92.00	protein indeterminate-domain 16 [Benincasa hispida]	[more]

BLAST of CsGy1G000540 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LRS8	2.61e-112	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G001530 PE=4 SV=1	[more]
A0A5D3BFD1	1.51e-101	96.57	Protein indeterminate-domain 16 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A1S3CN02	1.51e-101	96.57	protein indeterminate-domain 16 OS=Cucumis melo OX=3656 GN=LOC103502321 PE=4 SV=...	[more]
A0A5A7UWD1	6.16e-101	96.00	Protein indeterminate-domain 16 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_...	[more]
A0A6J1E4S8	3.11e-89	87.50	protein indeterminate-domain 16-like OS=Cucurbita moschata OX=3662 GN=LOC1114299...	[more]

BLAST of CsGy1G000540 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G48550.1	2.7e-33	52.54	BEST Arabidopsis thaliana protein match is: C2H2-like zinc finger protein (TAIR:...	[more]
AT2G01940.1	5.5e-10	41.77	C2H2-like zinc finger protein	[more]
AT2G01940.2	5.5e-10	41.77	C2H2-like zinc finger protein	[more]
AT2G01940.3	5.5e-10	41.77	C2H2-like zinc finger protein	[more]
AT1G25250.1	6.7e-08	42.65	indeterminate(ID)-domain 16	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 114..162
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 13..37
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..37
None	No IPR available	PANTHER	PTHR34946:SF2	OS03G0310200 PROTEIN	coord: 1..174
IPR039288	Zinc finger protein SHOOT GRAVITROPISM 5-like	PANTHER	PTHR34946	OS03G0310200 PROTEIN	coord: 1..174

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy1G000540.1	CsGy1G000540.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009630	gravitropism
cellular_component	GO:0005634	nucleus