CsGy1G000487 (gene) Cucumber (Gy14) v2.1

Overview
NameCsGy1G000487
Typegene
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Descriptionmediator of RNA polymerase II transcription subunit 30
LocationGy14Chr1: 256720 .. 261018 (-)
RNA-Seq ExpressionCsGy1G000487
SyntenyCsGy1G000487
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ACAGACTTGAAATCTGTTGGGCTTCGCCCGCGCAGGTTCGAACCCTGCTGTCGACGTTTTTTTTTTTTCTGGGGTTTCTCGATTACTAATGAGAGAGTTAGGGTTTCGTGAACATCACAAACTCAAGTGTAATTGAAAGTTGGAATTGGGAATTTTGAAGATTCAGAACTCTCTCTCTTTACAAATTCGGTGCATTTTCGAATACATTATGGAAGAGAAATCGACTAATGTTTTGGCTCTTCCCCAGACAACTCAAGAGCTTGCAATGGAGGGCATCAAGCATCTTGAAGAAACCATAGAATCCGCTTTCCAGATTCTCTACTCCATGAACGACGAGCTCTGTAATCCCACATTATGGTCCACCACTTCTTCAACGGCAACCACGGCTACTTCTGGTTTAACAATTGCCAGCCCAAGTGGTCCATCTTCGCATTCTGCTAATGGAGTTGTAAATGGTGATGCTAGTTCCGAAAGCACTAGCCATCACACCGATTCCAGCGGCGGCGGAGGCAGTGGTAGTGGGGGAGCCCTTGAGGAGGCACGAGTTCGCTACAAGAACTCAGTTCTTGCACTTCGTGCTATTCTTGCTGCAATCCCCAATTCTCAGAAGGTGAAATTACTGACTGATCTTCCATTTATCCATCTAGCTCAATAGCCAATGTTTATCATTTCGAATTTGATTTTTATCTGGGAAAATTGAGATCGATTTGGAGATGTTGGGTTCTCCCCTATGGTACGAAATGCTATAAGTGTCGGAACATCGAATCTTGGTATCCATTTCTGACGAATTCCTTAAATTCTTCCTGAATTTGATAGATTGCAGATGCTACATTTGATCTGGTTTTCATTTTCACTGTTGCTAATTGATGCATGTACTTACTCCATGTACTTGTAATTTGATAGATTGCTAACTGCATATACTTGTTCTAAACCTATGCTGATTCAATGATTTTAAGTAGAGCTTCGTGTTTATTGATAGGCAAAAGCATACGAATCGGGTACGAGTGGTCATGCATCGCCTGCAGACCAATCTGAAATTGATAAGTTGGAACAACACCTCTCTAATCTCAGAAAGGTATTTTTGTTCTCTTTAGCTTGTGAATTCATGTCAGTAATTTATTTTTTCTTCAATACTTTTTGGATGTGGCGTGAACACTTCAATGGTTTCTGGAAATTATTTACTTATTAAGATTTTGGAGTCTACTTAGCTTCAACAACGCAGTACTGTCATTTTTCGATATATCTGTGTAGAATTTACTTAAAAGTTAAAGTATATACAATGAAACTGAGAAGGTAACGTCTCTACAAATTTCAAGATAACAGTTCCGTTTTCTTCTTATTTGTGGTATAGTATATCCAAGGAAAGATTTTGAAACTAAACGGACAATAGAGATAATCAAATATTGAAACTTTATAATATTTTAGAGGATACGTGATAGGTATTATCGATAGTATGCTTTTTCTTTAGCCTTTAAGGTCCTAGAAATGACATTTTTTTCCCTTCAACTACTATCTTATAAGGGTCCTATCTTCGGTTTCTTTGCAGGAACTTGTGGTTAAAAATTTGCATATCAAGCTTCTGATAGATCAACTACGAGATCTTGTTGCTGATGTATCTACATGGCAAAGTCCTTGTTCTGTGTGAAAAAACGTGCTAGCTTTGACTTTAGAGTCTCCTCGCTAATTGAGCTGTTGAAGTTTATAATTGCGATGTTCTGTTTCTTGAAAAGATGAGTTGTTATTAGAACGTTTCTTTGCATCTCTTCATTGAAAGTGGTGGCTATACAAATTTGCCATTGCCTATAAATTGTCAATATAGAGTAAGGCTCTGATAAATTAAGTGCCAGAGGAATTAAAGGTTCAATTACGTGAGTTTTTTCATACGTCACAATCTACAAAAACCCTCTAGACACTCTTAACACACACTTGGATGCACACAAAAACAACCATATAGCTTCTGCGTATGAAACATAGTTACACTTGCTTTCAACTTCTAAAATCTAGCTTGTAAGGAATGAGAATTTATGTGGCCGTATTAGGTTTTATACTCTCGAAGAACACAATCAGTTGTGGATTGATGATCTTGTAGTAAGGGAAGATCTCATATCCACAATGGCTGATTCATCTGCACCCAACTTGATAGCCTCTTTGCTTGCTCTGATGAACCTTGAAACAGCTCCTCTAGTGTAATCGTGTGCTTCTTTAACGGTCATCTTCTCACTTATTTCATTAGGGAAACTACTCAGGAAATGATCACCATTTAGAACAGCAGCTAACTGTACTACCTCGCTCTGAAACTCGGATAATCCACTGTTTTCGTTTGCTTCTGTTTTCCTCAAAGGCGTCACTTCAGGCAAGGTTACTGCAACAAGTGTTTGTGTAATTAACAACAAAACATAATTTCAATTGGGAAAACGTCGATGAGTCTCAAACCGGTATAGATTGATGATACGATACCTGGACAGTCGGTTCGTGGCGAGGTTAACTGGTCAACGATGTCCTCAAATGTCCCAGCCCAAGCATCTCTGTGAGTCAGGAAGTTAGAGTGGATATTGAAAATTTTCTTTATGGTAGCAGGGATTGAGGAATGCTCAAACTCAGAGTTTGGAGTTGGACCCTTTGGACTGCTTATTACTGCAAAACAAAACAGGAGTTTAGAGCTATGAACACACCCAAGAAAAGGAAATAGCCAAACATTTATGGACAGTATTTTTCTTATGTTGTAAAAGGCTATTGATTCAGAAGAGAAGAACTTGACTTACCAGTTCCTTTCTTAATCCAAGGCGAGACCATAATTGTAGGCACGCGAACTCCAAGCCGATCGAACTTGAAGAAATAGGGAGCAGGGCCTGTGTTTCCATCAGGATTAGGGACATTAACGAAAGGAGTTTTGACATGGTCATAAAATCCACCATGTTCATCGTAAGTGATTATCAAAAGGGTTTCATTCCAATGGGGGCTAGCCCTAAGAGTCTCGTAAACCTCTTTCACCAGCTTTTGCCCATTTGCAACATCATGAGATGGATGATCATCATTTGCAGGCATTCCCACAAGATCAAAGTACCTTGGCTCAATCACAGTTAAGCTAGGAAGTTTACCATTTCTAGCATCCTTTTTGAACTTCAAATCATACTGATGAAACTTGAAAATGTACTTCAATTTCCTCAGGTTTCTATAAAACAGAGTAGTGGGTATGTTCTGGAAGTAAATTCCAAAGTTGATACCATTCTCATGAAGTGAATCAAAAATAGTTTTTTGAGGATACCCCATTGCTAATTGCTTCTTCACGTGGCTAGTTGAACCATGAGAAGTTGCTGAATAAACAAAAAGCCTATTGGGCTGAGTTGGGCCAGGAATTGATGAGAACCATCTATCAAACACTGCAAATTCACGAACTAAAGCTCCATAAATGGGTACAGCTTCAGGTTTAAAGCCTTTCATGACAGTTTCAGAGAGATTTGGTGACATTGAAAGAGCTTGTTCCACAAAGCCAGACATGGAAGGAATGGAATTAGAACCAAATACCTGCTGCAAAACGTCTTCAAATGAATGCCCCGGATCCGGATCTACAAACTCGGCATCATCAGTGAAACAAATCGTTTCAGGGTTGGGATTCTTGGTTGAAACAGGGTTGCATTCATCTCCAGTGACGCCATTGATTTGTGGGTTGATGTATTTCTTCATCCACCCAATCATGTGATCGAAGGAACGATTCTCCATTACCAAAACCACGACGGTTTTGATGGGTTGCTGCTGGAAACTGCGTTGTGGAAGCCATGAGAGAGTGAGAAGAAGGAAGAAAATGGAAGGCAAATGAAATTGGAATTTGCTTTGCCGTCCTCTCATTGTGTTATCACTGCGAACAGAGACAAGGAAAATAGAAGAAGAAGAAGAAGAAGAAGAAGATAAGTCTGCCAAATTTAGTGTGAGATTCCAAAAGAGAACTTAAAAATGAGGAAATTGGATTGTGGATGAGAATGTTACAGGCAAATCCCACTTTAAAAAATGCAAAATCCTCTGGTTGTGACTAAGAGAGAGAGAGGGAAGCTTAGAATGGAGTGAAACGGAGAGAGAGAAGAGGAAGAAGCTTCCGGTCTTGAGCGTTTCAGATAACAGTGCAATTAAAGTAAAGAATCAACAATAAGGGAAGGTGAAGCGCAAAAATTGAAAATTCACTCTCTTTTTTTCTTTATTATTGGAAACAACTGCCGTTTCTTTTTTTCTCAATAATCCTTTCATTCGTATCACATTTGCAGTTACAATTTTTATGGAATTTAATTCTTCCTTCCCATTTTTCAG

mRNA sequence

ACAGACTTGAAATCTGTTGGGCTTCGCCCGCGCAGGTTCGAACCCTGCTGTCGACGTTTTTTTTTTTTCTGGGGTTTCTCGATTACTAATGAGAGAGTTAGGGTTTCGTGAACATCACAAACTCAAGTGTAATTGAAAGTTGGAATTGGGAATTTTGAAGATTCAGAACTCTCTCTCTTTACAAATTCGGTGCATTTTCGAATACATTATGGAAGAGAAATCGACTAATGTTTTGGCTCTTCCCCAGACAACTCAAGAGCTTGCAATGGAGGGCATCAAGCATCTTGAAGAAACCATAGAATCCGCTTTCCAGATTCTCTACTCCATGAACGACGAGCTCTGTAATCCCACATTATGGTCCACCACTTCTTCAACGGCAACCACGGCTACTTCTGGTTTAACAATTGCCAGCCCAAGTGGTCCATCTTCGCATTCTGCTAATGGAGTTGTAAATGGTGATGCTAGTTCCGAAAGCACTAGCCATCACACCGATTCCAGCGGCGGCGGAGGCAGTGGTAGTGGGGGAGCCCTTGAGGAGGCACGAGTTCGCTACAAGAACTCAGTTCTTGCACTTCGTGCTATTCTTGCTGCAATCCCCAATTCTCAGAAGGCAAAAGCATACGAATCGGGTACGAGTGGTCATGCATCGCCTGCAGACCAATCTGAAATTGATAAGTTGGAACAACACCTCTCTAATCTCAGAAAGGAACTTGTGGTTAAAAATTTGCATATCAAGCTTCTGATAGATCAACTACGAGATCTTGTTGCTGATGTATCTACATGGCAAAGTCCTTGTTCTGTGTGAAAAAACGTGCTAGCTTTGACTTTAGAGTCTCCTCGCTAATTGAGCTGTTGAAGTTTATAATTGCGATGTTCTGTTTCTTGAAAAGATGAGTTGTTATTAGAACGTTTCTTTGCATCTCTTCATTGAAAGTGGTGGCTATACAAATTTGCCATTGCCTATAAATTGTCAATATAGAGTAAGGCTCTGATAAATTAAGTGCCAGAGGAATTAAAGGTTCAATTACGTGAGTTTTTTCATACGTCACAATCTACAAAAACCCTCTAGACACTCTTAACACACACTTGGATGCACACAAAAACAACCATATAGCTTCTGCGTATGAAACATAGTTACACTTGCTTTCAACTTCTAAAATCTAGCTTGTAAGGAATGAGAATTTATGTGGCCGTATTAGGTTTTATACTCTCGAAGAACACAATCAGTTGTGGATTGATGATCTTGTAGTAAGGGAAGATCTCATATCCACAATGGCTGATTCATCTGCACCCAACTTGATAGCCTCTTTGCTTGCTCTGATGAACCTTGAAACAGCTCCTCTAGTGTAATCGTGTGCTTCTTTAACGGTCATCTTCTCACTTATTTCATTAGGGAAACTACTCAGGAAATGATCACCATTTAGAACAGCAGCTAACTGTACTACCTCGCTCTGAAACTCGGATAATCCACTGTTTTCGTTTGCTTCTGTTTTCCTCAAAGGCGTCACTTCAGGCAAGGTTACTGCAACAAGTGTTTGTGTAATTAACAACAAAACATAATTTCAATTGGGAAAACGTCGATGAGTCTCAAACCGGTATAGATTGATGATACGATACCTGGACAGTCGGTTCGTGGCGAGGTTAACTGGTCAACGATGTCCTCAAATGTCCCAGCCCAAGCATCTCTGTGAGTCAGGAAGTTAGAGTGGATATTGAAAATTTTCTTTATGGTAGCAGGGATTGAGGAATGCTCAAACTCAGAGTTTGGAGTTGGACCCTTTGGACTGCTTATTACTGCAAAACAAAACAGGAGTTTAGAGCTATGAACACACCCAAGAAAAGGAAATAGCCAAACATTTATGGACAGTATTTTTCTTATGTTGTAAAAGGCTATTGATTCAGAAGAGAAGAACTTGACTTACCAGTTCCTTTCTTAATCCAAGGCGAGACCATAATTGTAGGCACGCGAACTCCAAGCCGATCGAACTTGAAGAAATAGGGAGCAGGGCCTGTGTTTCCATCAGGATTAGGGACATTAACGAAAGGAGTTTTGACATGGTCATAAAATCCACCATGTTCATCGTAAGTGATTATCAAAAGGGTTTCATTCCAATGGGGGCTAGCCCTAAGAGTCTCGTAAACCTCTTTCACCAGCTTTTGCCCATTTGCAACATCATGAGATGGATGATCATCATTTGCAGGCATTCCCACAAGATCAAAGTACCTTGGCTCAATCACAGTTAAGCTAGGAAGTTTACCATTTCTAGCATCCTTTTTGAACTTCAAATCATACTGATGAAACTTGAAAATGTACTTCAATTTCCTCAGGTTTCTATAAAACAGAGTAGTGGGTATGTTCTGGAAGTAAATTCCAAAGTTGATACCATTCTCATGAAGTGAATCAAAAATAGTTTTTTGAGGATACCCCATTGCTAATTGCTTCTTCACGTGGCTAGTTGAACCATGAGAAGTTGCTGAATAAACAAAAAGCCTATTGGGCTGAGTTGGGCCAGGAATTGATGAGAACCATCTATCAAACACTGCAAATTCACGAACTAAAGCTCCATAAATGGGTACAGCTTCAGGTTTAAAGCCTTTCATGACAGTTTCAGAGAGATTTGGTGACATTGAAAGAGCTTGTTCCACAAAGCCAGACATGGAAGGAATGGAATTAGAACCAAATACCTGCTGCAAAACGTCTTCAAATGAATGCCCCGGATCCGGATCTACAAACTCGGCATCATCAGTGAAACAAATCGTTTCAGGGTTGGGATTCTTGGTTGAAACAGGGTTGCATTCATCTCCAGTGACGCCATTGATTTGTGGGTTGATGTATTTCTTCATCCACCCAATCATGTGATCGAAGGAACGATTCTCCATTACCAAAACCACGACGGTTTTGATGGGTTGCTGCTGGAAACTGCGTTGTGGAAGCCATGAGAGAGTGAGAAGAAGGAAGAAAATGGAAGGCAAATGAAATTGGAATTTGCTTTGCCGTCCTCTCATTGTGTTATCACTGCGAACAGAGACAAGGAAAATAGAAGAAGAAGAAGAAGAAGAAGAAGATAAGTCTGCCAAATTTAGTGTGAGATTCCAAAAGAGAACTTAAAAATGAGGAAATTGGATTGTGGATGAGAATGTTACAGGCAAATCCCACTTTAAAAAATGCAAAATCCTCTGGTTGTGACTAAGAGAGAGAGAGGGAAGCTTAGAATGGAGTGAAACGGAGAGAGAGAAGAGGAAGAAGCTTCCGGTCTTGAGCGTTTCAGATAACAGTGCAATTAAAGTAAAGAATCAACAATAAGGGAAGGTGAAGCGCAAAAATTGAAAATTCACTCTCTTTTTTTCTTTATTATTGGAAACAACTGCCGTTTCTTTTTTTCTCAATAATCCTTTCATTCGTATCACATTTGCAGTTACAATTTTTATGGAATTTAATTCTTCCTTCCCATTTTTCAG

Coding sequence (CDS)

ATGGAAGAGAAATCGACTAATGTTTTGGCTCTTCCCCAGACAACTCAAGAGCTTGCAATGGAGGGCATCAAGCATCTTGAAGAAACCATAGAATCCGCTTTCCAGATTCTCTACTCCATGAACGACGAGCTCTGTAATCCCACATTATGGTCCACCACTTCTTCAACGGCAACCACGGCTACTTCTGGTTTAACAATTGCCAGCCCAAGTGGTCCATCTTCGCATTCTGCTAATGGAGTTGTAAATGGTGATGCTAGTTCCGAAAGCACTAGCCATCACACCGATTCCAGCGGCGGCGGAGGCAGTGGTAGTGGGGGAGCCCTTGAGGAGGCACGAGTTCGCTACAAGAACTCAGTTCTTGCACTTCGTGCTATTCTTGCTGCAATCCCCAATTCTCAGAAGGCAAAAGCATACGAATCGGGTACGAGTGGTCATGCATCGCCTGCAGACCAATCTGAAATTGATAAGTTGGAACAACACCTCTCTAATCTCAGAAAGGAACTTGTGGTTAAAAATTTGCATATCAAGCTTCTGATAGATCAACTACGAGATCTTGTTGCTGATGTATCTACATGGCAAAGTCCTTGTTCTGTGTGA

Protein sequence

MEEKSTNVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTATSGLTIASPSGPSSHSANGVVNGDASSESTSHHTDSSGGGGSGSGGALEEARVRYKNSVLALRAILAAIPNSQKAKAYESGTSGHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV*
Homology
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BLAST of CsGy1G000487 vs. ExPASy Swiss-Prot
Match: Q9FMV4 (Mediator of RNA polymerase II transcription subunit 30 OS=Arabidopsis thaliana OX=3702 GN=MED30 PE=1 SV=1)

HSP 1 Score: 183.0 bits (463), Expect = 3.4e-45
Identity = 105/188 (55.85%), Postives = 142/188 (75.53%), Query Frame = 0 

Query: 14  TTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTATSGLTIASPSGPS 73
           TTQELAMEG K LEETIE+AFQI+ +MNDELCNP+LWST+++ ++ AT+          +
Sbjct: 13  TTQELAMEGEKQLEETIEAAFQIISAMNDELCNPSLWSTSATPSSAATT----------T 72

Query: 74  SHSANGVVNGDASS-ESTSHHTDSSGGGGSGSGG--ALEEARVRYKNSVLALRAILAAIP 133
             + + +V+ DA++ + TSHH++S+GGGG G  G   L+EA +RYKNSV +LRA+LAAIP
Sbjct: 73  GSNGSALVSADAAAIDGTSHHSESAGGGGGGGSGNSVLDEASLRYKNSVTSLRAVLAAIP 132

Query: 134 NSQKAKAYESGTSGHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLIDQLRDLVADVS 193
           NSQKAKA E   +G  SP  + EI+KLE+   +LR E+  KN+H+K LID+LR+L+AD+S
Sbjct: 133 NSQKAKASEM-QNGLGSPESEDEIEKLEEQALSLRMEIAKKNVHVKELIDKLRELIADIS 189

Query: 194 TWQSPCSV 199
           TWQSPCSV
Sbjct: 193 TWQSPCSV 189

[Close]
BLAST of CsGy1G000487 vs. NCBI nr
Match: XP_004138044.1 (mediator of RNA polymerase II transcription subunit 30 [Cucumis sativus] >KGN63478.1 hypothetical protein Csa_013518 [Cucumis sativus])

HSP 1 Score: 368 bits (945), Expect = 5.23e-128
Identity = 198/198 (100.00%), Postives = 198/198 (100.00%), Query Frame = 0 

Query: 1   MEEKSTNVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTA 60
           MEEKSTNVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTA
Sbjct: 1   MEEKSTNVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTA 60

Query: 61  TSGLTIASPSGPSSHSANGVVNGDASSESTSHHTDSSGGGGSGSGGALEEARVRYKNSVL 120
           TSGLTIASPSGPSSHSANGVVNGDASSESTSHHTDSSGGGGSGSGGALEEARVRYKNSVL
Sbjct: 61  TSGLTIASPSGPSSHSANGVVNGDASSESTSHHTDSSGGGGSGSGGALEEARVRYKNSVL 120

Query: 121 ALRAILAAIPNSQKAKAYESGTSGHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLID 180
           ALRAILAAIPNSQKAKAYESGTSGHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLID
Sbjct: 121 ALRAILAAIPNSQKAKAYESGTSGHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLID 180

Query: 181 QLRDLVADVSTWQSPCSV 198
           QLRDLVADVSTWQSPCSV
Sbjct: 181 QLRDLVADVSTWQSPCSV 198

[Close]
BLAST of CsGy1G000487 vs. NCBI nr
Match: XP_008464424.1 (PREDICTED: mediator of RNA polymerase II transcription subunit 30 [Cucumis melo] >KAA0057767.1 mediator of RNA polymerase II transcription subunit 30 [Cucumis melo var. makuwa] >TYJ98448.1 mediator of RNA polymerase II transcription subunit 30 [Cucumis melo var. makuwa])

HSP 1 Score: 360 bits (924), Expect = 8.31e-125
Identity = 194/198 (97.98%), Postives = 195/198 (98.48%), Query Frame = 0 

Query: 1   MEEKSTNVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTA 60
           MEEKST VLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTA
Sbjct: 1   MEEKSTTVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTA 60

Query: 61  TSGLTIASPSGPSSHSANGVVNGDASSESTSHHTDSSGGGGSGSGGALEEARVRYKNSVL 120
           TSGLTIASP+GPSSHSANGVVNGDASSESTSHHTDSS GGGSGSGGALEEARVRYKNSVL
Sbjct: 61  TSGLTIASPNGPSSHSANGVVNGDASSESTSHHTDSSSGGGSGSGGALEEARVRYKNSVL 120

Query: 121 ALRAILAAIPNSQKAKAYESGTSGHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLID 180
           ALRAILAAIPNSQKAKAYESGTS HASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLID
Sbjct: 121 ALRAILAAIPNSQKAKAYESGTSAHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLID 180

Query: 181 QLRDLVADVSTWQSPCSV 198
           QLRDLVADVSTWQSPCSV
Sbjct: 181 QLRDLVADVSTWQSPCSV 198

[Close]
BLAST of CsGy1G000487 vs. NCBI nr
Match: XP_022921424.1 (mediator of RNA polymerase II transcription subunit 30 [Cucurbita moschata] >XP_022987135.1 mediator of RNA polymerase II transcription subunit 30 [Cucurbita maxima] >XP_023515464.1 mediator of RNA polymerase II transcription subunit 30 [Cucurbita pepo subsp. pepo] >KAG6589379.1 Mediator of RNA polymerase II transcription subunit 30, partial [Cucurbita argyrosperma subsp. sororia] >KAG7023058.1 Mediator of RNA polymerase II transcription subunit 30 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 349 bits (896), Expect = 1.54e-120
Identity = 186/198 (93.94%), Postives = 193/198 (97.47%), Query Frame = 0 

Query: 1   MEEKSTNVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTA 60
           MEEK TNVL+LPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATT 
Sbjct: 1   MEEKPTNVLSLPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTT 60

Query: 61  TSGLTIASPSGPSSHSANGVVNGDASSESTSHHTDSSGGGGSGSGGALEEARVRYKNSVL 120
           TSGLTIASP+ PSSHS NGVVNGDASSEST+HHTD+S GGGSGSGGALEEARVRYKNSVL
Sbjct: 61  TSGLTIASPNAPSSHSTNGVVNGDASSESTNHHTDTSSGGGSGSGGALEEARVRYKNSVL 120

Query: 121 ALRAILAAIPNSQKAKAYESGTSGHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLID 180
           ALRAILAAIPNSQKAKA+ESGTSGHASPADQSEIDKLEQHLSNLRKEL+VKNLHIKLLID
Sbjct: 121 ALRAILAAIPNSQKAKAHESGTSGHASPADQSEIDKLEQHLSNLRKELMVKNLHIKLLID 180

Query: 181 QLRDLVADVSTWQSPCSV 198
           QLR+LVADVSTWQSPCSV
Sbjct: 181 QLRELVADVSTWQSPCSV 198

[Close]
BLAST of CsGy1G000487 vs. NCBI nr
Match: XP_038879540.1 (mediator of RNA polymerase II transcription subunit 30 [Benincasa hispida])

HSP 1 Score: 344 bits (882), Expect = 2.02e-118
Identity = 188/198 (94.95%), Postives = 190/198 (95.96%), Query Frame = 0 

Query: 1   MEEKSTNVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTA 60
           MEEK TNVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSST TTA
Sbjct: 2   MEEKPTNVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTVTTA 61

Query: 61  TSGLTIASPSGPSSHSANGVVNGDASSESTSHHTDSSGGGGSGSGGALEEARVRYKNSVL 120
           TSGL IASP+GPSSHS NGVVNGDASSESTSHHTDSS GGGSGSGGALEEARVRYKNSVL
Sbjct: 62  TSGLAIASPNGPSSHSVNGVVNGDASSESTSHHTDSSSGGGSGSGGALEEARVRYKNSVL 121

Query: 121 ALRAILAAIPNSQKAKAYESGTSGHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLID 180
           ALRAILAAIPNSQKA AYESGTSG  SPADQSEIDKLEQHLS+LRKELVVKNLHIKLLID
Sbjct: 122 ALRAILAAIPNSQKATAYESGTSG--SPADQSEIDKLEQHLSSLRKELVVKNLHIKLLID 181

Query: 181 QLRDLVADVSTWQSPCSV 198
           QLRDLVADVSTWQSPCSV
Sbjct: 182 QLRDLVADVSTWQSPCSV 197

[Close]
BLAST of CsGy1G000487 vs. NCBI nr
Match: XP_022134927.1 (mediator of RNA polymerase II transcription subunit 30 [Momordica charantia])

HSP 1 Score: 324 bits (831), Expect = 1.11e-110
Identity = 173/198 (87.37%), Postives = 186/198 (93.94%), Query Frame = 0 

Query: 1   MEEKSTNVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTA 60
           ME+K T++LALPQTTQELA+EGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTAT+A
Sbjct: 1   MEDKPTSILALPQTTQELAIEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATSA 60

Query: 61  TSGLTIASPSGPSSHSANGVVNGDASSESTSHHTDSSGGGGSGSGGALEEARVRYKNSVL 120
              L+IASP+GPS HS NGVVNGDASSEST+HH D+S GGG+GSGGALEEARVRY NSVL
Sbjct: 61  ---LSIASPNGPSPHSTNGVVNGDASSESTNHHADTSSGGGTGSGGALEEARVRYNNSVL 120

Query: 121 ALRAILAAIPNSQKAKAYESGTSGHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLID 180
           ALRAILAAIP+SQ AKAYESGTSGHASPADQSEIDKLEQHL NLRKELV KNLH+KLLID
Sbjct: 121 ALRAILAAIPSSQNAKAYESGTSGHASPADQSEIDKLEQHLCNLRKELVNKNLHLKLLID 180

Query: 181 QLRDLVADVSTWQSPCSV 198
           QLRDLVAD+STWQSPCSV
Sbjct: 181 QLRDLVADISTWQSPCSV 195

[Close]
BLAST of CsGy1G000487 vs. ExPASy TrEMBL
Match: A0A0A0LNW4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G001500 PE=4 SV=1)

HSP 1 Score: 368 bits (945), Expect = 2.53e-128
Identity = 198/198 (100.00%), Postives = 198/198 (100.00%), Query Frame = 0 

Query: 1   MEEKSTNVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTA 60
           MEEKSTNVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTA
Sbjct: 1   MEEKSTNVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTA 60

Query: 61  TSGLTIASPSGPSSHSANGVVNGDASSESTSHHTDSSGGGGSGSGGALEEARVRYKNSVL 120
           TSGLTIASPSGPSSHSANGVVNGDASSESTSHHTDSSGGGGSGSGGALEEARVRYKNSVL
Sbjct: 61  TSGLTIASPSGPSSHSANGVVNGDASSESTSHHTDSSGGGGSGSGGALEEARVRYKNSVL 120

Query: 121 ALRAILAAIPNSQKAKAYESGTSGHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLID 180
           ALRAILAAIPNSQKAKAYESGTSGHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLID
Sbjct: 121 ALRAILAAIPNSQKAKAYESGTSGHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLID 180

Query: 181 QLRDLVADVSTWQSPCSV 198
           QLRDLVADVSTWQSPCSV
Sbjct: 181 QLRDLVADVSTWQSPCSV 198

[Close]
BLAST of CsGy1G000487 vs. ExPASy TrEMBL
Match: A0A5A7USU3 (Mediator of RNA polymerase II transcription subunit 30 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold350G00490 PE=4 SV=1)

HSP 1 Score: 360 bits (924), Expect = 4.02e-125
Identity = 194/198 (97.98%), Postives = 195/198 (98.48%), Query Frame = 0 

Query: 1   MEEKSTNVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTA 60
           MEEKST VLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTA
Sbjct: 1   MEEKSTTVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTA 60

Query: 61  TSGLTIASPSGPSSHSANGVVNGDASSESTSHHTDSSGGGGSGSGGALEEARVRYKNSVL 120
           TSGLTIASP+GPSSHSANGVVNGDASSESTSHHTDSS GGGSGSGGALEEARVRYKNSVL
Sbjct: 61  TSGLTIASPNGPSSHSANGVVNGDASSESTSHHTDSSSGGGSGSGGALEEARVRYKNSVL 120

Query: 121 ALRAILAAIPNSQKAKAYESGTSGHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLID 180
           ALRAILAAIPNSQKAKAYESGTS HASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLID
Sbjct: 121 ALRAILAAIPNSQKAKAYESGTSAHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLID 180

Query: 181 QLRDLVADVSTWQSPCSV 198
           QLRDLVADVSTWQSPCSV
Sbjct: 181 QLRDLVADVSTWQSPCSV 198

[Close]
BLAST of CsGy1G000487 vs. ExPASy TrEMBL
Match: A0A1S3CMZ7 (mediator of RNA polymerase II transcription subunit 30 OS=Cucumis melo OX=3656 GN=LOC103502315 PE=4 SV=1)

HSP 1 Score: 360 bits (924), Expect = 4.02e-125
Identity = 194/198 (97.98%), Postives = 195/198 (98.48%), Query Frame = 0 

Query: 1   MEEKSTNVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTA 60
           MEEKST VLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTA
Sbjct: 1   MEEKSTTVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTA 60

Query: 61  TSGLTIASPSGPSSHSANGVVNGDASSESTSHHTDSSGGGGSGSGGALEEARVRYKNSVL 120
           TSGLTIASP+GPSSHSANGVVNGDASSESTSHHTDSS GGGSGSGGALEEARVRYKNSVL
Sbjct: 61  TSGLTIASPNGPSSHSANGVVNGDASSESTSHHTDSSSGGGSGSGGALEEARVRYKNSVL 120

Query: 121 ALRAILAAIPNSQKAKAYESGTSGHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLID 180
           ALRAILAAIPNSQKAKAYESGTS HASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLID
Sbjct: 121 ALRAILAAIPNSQKAKAYESGTSAHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLID 180

Query: 181 QLRDLVADVSTWQSPCSV 198
           QLRDLVADVSTWQSPCSV
Sbjct: 181 QLRDLVADVSTWQSPCSV 198

[Close]
BLAST of CsGy1G000487 vs. ExPASy TrEMBL
Match: A0A6J1JFZ2 (mediator of RNA polymerase II transcription subunit 30 OS=Cucurbita maxima OX=3661 GN=LOC111484777 PE=4 SV=1)

HSP 1 Score: 349 bits (896), Expect = 7.45e-121
Identity = 186/198 (93.94%), Postives = 193/198 (97.47%), Query Frame = 0 

Query: 1   MEEKSTNVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTA 60
           MEEK TNVL+LPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATT 
Sbjct: 1   MEEKPTNVLSLPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTT 60

Query: 61  TSGLTIASPSGPSSHSANGVVNGDASSESTSHHTDSSGGGGSGSGGALEEARVRYKNSVL 120
           TSGLTIASP+ PSSHS NGVVNGDASSEST+HHTD+S GGGSGSGGALEEARVRYKNSVL
Sbjct: 61  TSGLTIASPNAPSSHSTNGVVNGDASSESTNHHTDTSSGGGSGSGGALEEARVRYKNSVL 120

Query: 121 ALRAILAAIPNSQKAKAYESGTSGHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLID 180
           ALRAILAAIPNSQKAKA+ESGTSGHASPADQSEIDKLEQHLSNLRKEL+VKNLHIKLLID
Sbjct: 121 ALRAILAAIPNSQKAKAHESGTSGHASPADQSEIDKLEQHLSNLRKELMVKNLHIKLLID 180

Query: 181 QLRDLVADVSTWQSPCSV 198
           QLR+LVADVSTWQSPCSV
Sbjct: 181 QLRELVADVSTWQSPCSV 198

[Close]
BLAST of CsGy1G000487 vs. ExPASy TrEMBL
Match: A0A6J1E0F5 (mediator of RNA polymerase II transcription subunit 30 OS=Cucurbita moschata OX=3662 GN=LOC111429707 PE=4 SV=1)

HSP 1 Score: 349 bits (896), Expect = 7.45e-121
Identity = 186/198 (93.94%), Postives = 193/198 (97.47%), Query Frame = 0 

Query: 1   MEEKSTNVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTA 60
           MEEK TNVL+LPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATT 
Sbjct: 1   MEEKPTNVLSLPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTT 60

Query: 61  TSGLTIASPSGPSSHSANGVVNGDASSESTSHHTDSSGGGGSGSGGALEEARVRYKNSVL 120
           TSGLTIASP+ PSSHS NGVVNGDASSEST+HHTD+S GGGSGSGGALEEARVRYKNSVL
Sbjct: 61  TSGLTIASPNAPSSHSTNGVVNGDASSESTNHHTDTSSGGGSGSGGALEEARVRYKNSVL 120

Query: 121 ALRAILAAIPNSQKAKAYESGTSGHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLID 180
           ALRAILAAIPNSQKAKA+ESGTSGHASPADQSEIDKLEQHLSNLRKEL+VKNLHIKLLID
Sbjct: 121 ALRAILAAIPNSQKAKAHESGTSGHASPADQSEIDKLEQHLSNLRKELMVKNLHIKLLID 180

Query: 181 QLRDLVADVSTWQSPCSV 198
           QLR+LVADVSTWQSPCSV
Sbjct: 181 QLRELVADVSTWQSPCSV 198

[Close]
BLAST of CsGy1G000487 vs. TAIR 10
Match: AT5G63480.1 (unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 183.0 bits (463), Expect = 2.4e-46
Identity = 105/188 (55.85%), Postives = 142/188 (75.53%), Query Frame = 0 

Query: 14  TTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTATSGLTIASPSGPS 73
           TTQELAMEG K LEETIE+AFQI+ +MNDELCNP+LWST+++ ++ AT+          +
Sbjct: 13  TTQELAMEGEKQLEETIEAAFQIISAMNDELCNPSLWSTSATPSSAATT----------T 72

Query: 74  SHSANGVVNGDASS-ESTSHHTDSSGGGGSGSGG--ALEEARVRYKNSVLALRAILAAIP 133
             + + +V+ DA++ + TSHH++S+GGGG G  G   L+EA +RYKNSV +LRA+LAAIP
Sbjct: 73  GSNGSALVSADAAAIDGTSHHSESAGGGGGGGSGNSVLDEASLRYKNSVTSLRAVLAAIP 132

Query: 134 NSQKAKAYESGTSGHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLIDQLRDLVADVS 193
           NSQKAKA E   +G  SP  + EI+KLE+   +LR E+  KN+H+K LID+LR+L+AD+S
Sbjct: 133 NSQKAKASEM-QNGLGSPESEDEIEKLEEQALSLRMEIAKKNVHVKELIDKLRELIADIS 189

Query: 194 TWQSPCSV 199
           TWQSPCSV
Sbjct: 193 TWQSPCSV 189

The following BLAST results are available for this feature:
BLAST of CsGy1G000487 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9FMV43.4e-4555.85Mediator of RNA polymerase II transcription subunit 30 OS=Arabidopsis thaliana O... [more]
BLAST of CsGy1G000487 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004138044.15.23e-128100.00mediator of RNA polymerase II transcription subunit 30 [Cucumis sativus] >KGN634... [more]
XP_008464424.18.31e-12597.98PREDICTED: mediator of RNA polymerase II transcription subunit 30 [Cucumis melo]... [more]
XP_022921424.11.54e-12093.94mediator of RNA polymerase II transcription subunit 30 [Cucurbita moschata] >XP_... [more]
XP_038879540.12.02e-11894.95mediator of RNA polymerase II transcription subunit 30 [Benincasa hispida][more]
XP_022134927.11.11e-11087.37mediator of RNA polymerase II transcription subunit 30 [Momordica charantia][more]
BLAST of CsGy1G000487 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LNW42.53e-128100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G001500 PE=4 SV=1[more]
A0A5A7USU34.02e-12597.98Mediator of RNA polymerase II transcription subunit 30 OS=Cucumis melo var. maku... [more]
A0A1S3CMZ74.02e-12597.98mediator of RNA polymerase II transcription subunit 30 OS=Cucumis melo OX=3656 G... [more]
A0A6J1JFZ27.45e-12193.94mediator of RNA polymerase II transcription subunit 30 OS=Cucurbita maxima OX=36... [more]
A0A6J1E0F57.45e-12193.94mediator of RNA polymerase II transcription subunit 30 OS=Cucurbita moschata OX=... [more]
BLAST of CsGy1G000487 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G63480.12.4e-4655.85unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae -... [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 154..174
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 62..107
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 62..101
NoneNo IPR availablePANTHERPTHR36406:SF2MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 30coord: 7..198
IPR034568Mediator of RNA polymerase II transcription subunit 30PANTHERPTHR36406MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 30coord: 7..198

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy1G000487.1CsGy1G000487.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016592 mediator complex