Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTCCCCTTCTCTCAACAAGAAAAAGACGCTGAACTCATCTCCACCCTCAACCGCCATGCCACTCCATCCTCCTCCTGGAAAATCAGAACCAACAAATTGGCTTACGAAGAGATTCGTACAGAACGAAGGGCCGCCATTGCTAGCGGTAACTTGAAGGCTCGAAGGCTCTCTTACGATGATGCCATCGACATGTCTCTTCACCTAAATACCAACTTCTTACTGCATGGGGATTACTTGGATGAGTTCCCTCAGGATGATGATCAGATGATTCCTTCATCCGATCCTGGGGAAGAAAAAGCAGAGCAAGTTTGTTTAAATGCTCTGTCTTATTCCTGTGCTTCCTCTTCTTCTTCTTCAGGAAAATTTGTTCCTCTGCAAATGAAAGAACAAATGGCAGCCAAGGCAGAGGTAGAAGAAAATGTGAGGGCGGTTGTTGGTGAGATCAAGATGGAAACTAGGAATGGGTGCAAAATAGGGAATTGGAAAGTGGGTTTGGCTTGCCTTGCTATTGCTTCGGTTCCTATGGTTATATTTTCACTACGTTGTTTAGGGCTACATGATGAGGAAGAACAATTCCCATTTCTTTTAGTTCCAACTTGA
mRNA sequence
ATGCTCCCCTTCTCTCAACAAGAAAAAGACGCTGAACTCATCTCCACCCTCAACCGCCATGCCACTCCATCCTCCTCCTGGAAAATCAGAACCAACAAATTGGCTTACGAAGAGATTCGTACAGAACGAAGGGCCGCCATTGCTAGCGGTAACTTGAAGGCTCGAAGGCTCTCTTACGATGATGCCATCGACATGTCTCTTCACCTAAATACCAACTTCTTACTGCATGGGGATTACTTGGATGAGTTCCCTCAGGATGATGATCAGATGATTCCTTCATCCGATCCTGGGGAAGAAAAAGCAGAGCAAGTTTGTTTAAATGCTCTGTCTTATTCCTGTGCTTCCTCTTCTTCTTCTTCAGGAAAATTTGTTCCTCTGCAAATGAAAGAACAAATGGCAGCCAAGGCAGAGGTAGAAGAAAATGTGAGGGCGGTTGTTGGTGAGATCAAGATGGAAACTAGGAATGGGTGCAAAATAGGGAATTGGAAAGTGGGTTTGGCTTGCCTTGCTATTGCTTCGGTTCCTATGGTTATATTTTCACTACGTTGTTTAGGGCTACATGATGAGGAAGAACAATTCCCATTTCTTTTAGTTCCAACTTGA
Coding sequence (CDS)
ATGCTCCCCTTCTCTCAACAAGAAAAAGACGCTGAACTCATCTCCACCCTCAACCGCCATGCCACTCCATCCTCCTCCTGGAAAATCAGAACCAACAAATTGGCTTACGAAGAGATTCGTACAGAACGAAGGGCCGCCATTGCTAGCGGTAACTTGAAGGCTCGAAGGCTCTCTTACGATGATGCCATCGACATGTCTCTTCACCTAAATACCAACTTCTTACTGCATGGGGATTACTTGGATGAGTTCCCTCAGGATGATGATCAGATGATTCCTTCATCCGATCCTGGGGAAGAAAAAGCAGAGCAAGTTTGTTTAAATGCTCTGTCTTATTCCTGTGCTTCCTCTTCTTCTTCTTCAGGAAAATTTGTTCCTCTGCAAATGAAAGAACAAATGGCAGCCAAGGCAGAGGTAGAAGAAAATGTGAGGGCGGTTGTTGGTGAGATCAAGATGGAAACTAGGAATGGGTGCAAAATAGGGAATTGGAAAGTGGGTTTGGCTTGCCTTGCTATTGCTTCGGTTCCTATGGTTATATTTTCACTACGTTGTTTAGGGCTACATGATGAGGAAGAACAATTCCCATTTCTTTTAGTTCCAACTTGA
Protein sequence
MLPFSQQEKDAELISTLNRHATPSSSWKIRTNKLAYEEIRTERRAAIASGNLKARRLSYDDAIDMSLHLNTNFLLHGDYLDEFPQDDDQMIPSSDPGEEKAEQVCLNALSYSCASSSSSSGKFVPLQMKEQMAAKAEVEENVRAVVGEIKMETRNGCKIGNWKVGLACLAIASVPMVIFSLRCLGLHDEEEQFPFLLVPT*
Homology
BLAST of CsGy1G000440 vs. NCBI nr
Match:
KGN63472.1 (hypothetical protein Csa_014116 [Cucumis sativus])
HSP 1 Score: 390 bits (1001), Expect = 1.76e-136
Identity = 197/200 (98.50%), Postives = 199/200 (99.50%), Query Frame = 0
Query: 1 MLPFSQQEKDAELISTLNRHATPSSSWKIRTNKLAYEEIRTERRAAIASGNLKARRLSYD 60
MLPFSQQE+DAELISTLNRHATPSSSWKIRTN+LAYEEIRTERRAAIASGNLKARRLSYD
Sbjct: 1 MLPFSQQEEDAELISTLNRHATPSSSWKIRTNQLAYEEIRTERRAAIASGNLKARRLSYD 60
Query: 61 DAIDMSLHLNTNFLLHGDYLDEFPQDDDQMIPSSDPGEEKAEQVCLNALSYSCASSSSSS 120
DAIDMSLHLNTNFLLHGDYLDE PQDDDQMIPSSDPGEEKAEQVCLNALSYSCASSSSSS
Sbjct: 61 DAIDMSLHLNTNFLLHGDYLDESPQDDDQMIPSSDPGEEKAEQVCLNALSYSCASSSSSS 120
Query: 121 GKFVPLQMKEQMAAKAEVEENVRAVVGEIKMETRNGCKIGNWKVGLACLAIASVPMVIFS 180
GKFVPLQMKEQMAAKAEVEENVRAVVGEIKMETRNGCKIGNWKVGLACLAIASVPMVIFS
Sbjct: 121 GKFVPLQMKEQMAAKAEVEENVRAVVGEIKMETRNGCKIGNWKVGLACLAIASVPMVIFS 180
Query: 181 LRCLGLHDEEEQFPFLLVPT 200
LRCLGLHDEEEQFPFLLVPT
Sbjct: 181 LRCLGLHDEEEQFPFLLVPT 200
BLAST of CsGy1G000440 vs. NCBI nr
Match:
KAA0057761.1 (hypothetical protein E6C27_scaffold274G00440 [Cucumis melo var. makuwa])
HSP 1 Score: 305 bits (780), Expect = 9.69e-103
Identity = 162/205 (79.02%), Postives = 177/205 (86.34%), Query Frame = 0
Query: 1 MLPFSQQEKDAELISTLNRHATPSSSWKIRTNKLAYEEIRTERRAAIASGNLKARRLSYD 60
MLPFSQQE+D ELIS+LNRH TP S+WKIRTN+LAY++IR ERRAAIASGNLK RRLSYD
Sbjct: 1 MLPFSQQEED-ELISSLNRHGTPPSNWKIRTNQLAYDDIRRERRAAIASGNLKGRRLSYD 60
Query: 61 DAIDMSLHLNTNFLLHGDYLDEFPQDDDQMIPSS-DPGEEKAEQV--CLNALSYSCASSS 120
DA+DMSLHL LHGDYLDEFPQDD +I SS D GEEKAEQV CLNALSYSCASSS
Sbjct: 61 DAVDMSLHLKNTDFLHGDYLDEFPQDDQIIIQSSSDSGEEKAEQVPVCLNALSYSCASSS 120
Query: 121 SSS--GKFVPLQMKEQMAAKAEVEENVRAVVGEIKMETRNGCKIGNWKVGLACLAIASVP 180
SSS G+ VP Q KE+MAAKA+VEENV A+VGE KMET NGCKIG WKVGLA LA+ASVP
Sbjct: 121 SSSSSGQLVPPQTKEEMAAKAKVEENVTAIVGEKKMETWNGCKIGKWKVGLAWLAVASVP 180
Query: 181 MVIFSLRCLGLHDEEEQFPFLLVPT 200
MV+FSLRCLG HDE+EQFPFLLVPT
Sbjct: 181 MVVFSLRCLGFHDEDEQFPFLLVPT 204
BLAST of CsGy1G000440 vs. NCBI nr
Match:
TYJ98442.1 (hypothetical protein E5676_scaffold350G00430 [Cucumis melo var. makuwa])
HSP 1 Score: 302 bits (773), Expect = 1.21e-101
Identity = 161/207 (77.78%), Postives = 176/207 (85.02%), Query Frame = 0
Query: 1 MLPFSQQEKDAELISTLNRHATPSSSWKIRTNKLAYEEIRTERRAAIASGNLKARRLSYD 60
MLPFSQQE+D ELIS+LNRH TP S+WKIRTN+LAY++IR ERRAAIASGNLK RRLSYD
Sbjct: 1 MLPFSQQEED-ELISSLNRHGTPPSNWKIRTNQLAYDDIRRERRAAIASGNLKGRRLSYD 60
Query: 61 DAIDMSLHLNTNFLLHGDYLDEFPQDDDQMI--PSSDPGEEKAEQV--CLNALSYSCASS 120
DA+DMSLHL LHGDYLDEFP DDQ+I SSD GEEKAEQV CLNALSYSCASS
Sbjct: 61 DAVDMSLHLKNTDFLHGDYLDEFPDQDDQIIIQSSSDSGEEKAEQVPVCLNALSYSCASS 120
Query: 121 SSSS---GKFVPLQMKEQMAAKAEVEENVRAVVGEIKMETRNGCKIGNWKVGLACLAIAS 180
SSSS G+ VP Q KE+MAAKA+VEENV A+VGE KMET NGCKIG WKVGLA LA+AS
Sbjct: 121 SSSSSSSGQLVPPQTKEEMAAKAKVEENVTAIVGEKKMETWNGCKIGKWKVGLAWLAVAS 180
Query: 181 VPMVIFSLRCLGLHDEEEQFPFLLVPT 200
VPMV+FSLRCL HDE+EQFPFLLVPT
Sbjct: 181 VPMVVFSLRCLWFHDEDEQFPFLLVPT 206
BLAST of CsGy1G000440 vs. NCBI nr
Match:
KAG6589372.1 (hypothetical protein SDJN03_14795, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 164 bits (416), Expect = 2.27e-47
Identity = 117/220 (53.18%), Postives = 138/220 (62.73%), Query Frame = 0
Query: 2 LPFSQQEKDAELISTLNRHATP----SSSWKIRTNKLAYEEIRTERRAAIASGNLKARRL 61
LP +D +LIS+L+RH T SS+WKIRTN+LA +EI ERRAA+ G RRL
Sbjct: 4 LPDDSPPED-DLISSLHRHGTATFSASSTWKIRTNELAQDEILRERRAAMGVGKFMGRRL 63
Query: 62 SYDDAIDMSLHLNTNFLLHGDYLDEFPQDD--DQMIPSSDP---------GEEKAEQ--- 121
S+DD +DM LNT LLHG+Y + F QD + SSD G+E+ E+
Sbjct: 64 SFDD-VDMGHALNTE-LLHGNYWNGFVQDQIVAPSVQSSDSSQDNRNRETGKEEEEEEVP 123
Query: 122 VCLNALSYSCASSSSSS--GKFVPLQMKEQMAAKAEVEENVRAVVGEIKMETRNGCKIGN 181
VCLN LSYS ASSSSSS G F P Q+KE EENVRA VG K E N C+IG
Sbjct: 124 VCLNGLSYSSASSSSSSSSGSFAPPQVKE--------EENVRASVGG-KREIGNRCRIGT 183
Query: 182 WKVGLACLAIASVPMVIFSLRCLGLHD-EEEQFPFLLVPT 200
W+VGLACLAIASV M+IFS RCL EEE+ PFLLVPT
Sbjct: 184 WEVGLACLAIASVVMLIFSARCLEFGAYEEERLPFLLVPT 211
BLAST of CsGy1G000440 vs. NCBI nr
Match:
XP_022134742.1 (uncharacterized protein LOC111006938 [Momordica charantia])
HSP 1 Score: 66.6 bits (161), Expect = 4.59e-10
Identity = 51/120 (42.50%), Postives = 63/120 (52.50%), Query Frame = 0
Query: 5 SQQEKDAELISTLNRHATP----SSSWKIRTNKLAYEEIRTERRAAIASGNLKARRLSYD 64
S E + ELIS L R + SS+WKIRTN+LA E R ERRAA A+ + AR+LSY+
Sbjct: 7 SGPEDEEELISYLQRRGSATLSGSSTWKIRTNELAQHEFRRERRAAAAA--IAARKLSYE 66
Query: 65 DAIDMSLHLNTNFLLHGDYLDEFPQDDDQMIPSSDPGEEKAEQVCLNALSYSCASSSSSS 120
D + SS+ G ++ VCLNALSYS ASSSSSS
Sbjct: 67 DLL-----------------------------SSEDGNQQQFPVCLNALSYSSASSSSSS 95
BLAST of CsGy1G000440 vs. ExPASy TrEMBL
Match:
A0A0A0LRR5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G001440 PE=4 SV=1)
HSP 1 Score: 390 bits (1001), Expect = 8.54e-137
Identity = 197/200 (98.50%), Postives = 199/200 (99.50%), Query Frame = 0
Query: 1 MLPFSQQEKDAELISTLNRHATPSSSWKIRTNKLAYEEIRTERRAAIASGNLKARRLSYD 60
MLPFSQQE+DAELISTLNRHATPSSSWKIRTN+LAYEEIRTERRAAIASGNLKARRLSYD
Sbjct: 1 MLPFSQQEEDAELISTLNRHATPSSSWKIRTNQLAYEEIRTERRAAIASGNLKARRLSYD 60
Query: 61 DAIDMSLHLNTNFLLHGDYLDEFPQDDDQMIPSSDPGEEKAEQVCLNALSYSCASSSSSS 120
DAIDMSLHLNTNFLLHGDYLDE PQDDDQMIPSSDPGEEKAEQVCLNALSYSCASSSSSS
Sbjct: 61 DAIDMSLHLNTNFLLHGDYLDESPQDDDQMIPSSDPGEEKAEQVCLNALSYSCASSSSSS 120
Query: 121 GKFVPLQMKEQMAAKAEVEENVRAVVGEIKMETRNGCKIGNWKVGLACLAIASVPMVIFS 180
GKFVPLQMKEQMAAKAEVEENVRAVVGEIKMETRNGCKIGNWKVGLACLAIASVPMVIFS
Sbjct: 121 GKFVPLQMKEQMAAKAEVEENVRAVVGEIKMETRNGCKIGNWKVGLACLAIASVPMVIFS 180
Query: 181 LRCLGLHDEEEQFPFLLVPT 200
LRCLGLHDEEEQFPFLLVPT
Sbjct: 181 LRCLGLHDEEEQFPFLLVPT 200
BLAST of CsGy1G000440 vs. ExPASy TrEMBL
Match:
A0A5A7UWC4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G00440 PE=4 SV=1)
HSP 1 Score: 305 bits (780), Expect = 4.69e-103
Identity = 162/205 (79.02%), Postives = 177/205 (86.34%), Query Frame = 0
Query: 1 MLPFSQQEKDAELISTLNRHATPSSSWKIRTNKLAYEEIRTERRAAIASGNLKARRLSYD 60
MLPFSQQE+D ELIS+LNRH TP S+WKIRTN+LAY++IR ERRAAIASGNLK RRLSYD
Sbjct: 1 MLPFSQQEED-ELISSLNRHGTPPSNWKIRTNQLAYDDIRRERRAAIASGNLKGRRLSYD 60
Query: 61 DAIDMSLHLNTNFLLHGDYLDEFPQDDDQMIPSS-DPGEEKAEQV--CLNALSYSCASSS 120
DA+DMSLHL LHGDYLDEFPQDD +I SS D GEEKAEQV CLNALSYSCASSS
Sbjct: 61 DAVDMSLHLKNTDFLHGDYLDEFPQDDQIIIQSSSDSGEEKAEQVPVCLNALSYSCASSS 120
Query: 121 SSS--GKFVPLQMKEQMAAKAEVEENVRAVVGEIKMETRNGCKIGNWKVGLACLAIASVP 180
SSS G+ VP Q KE+MAAKA+VEENV A+VGE KMET NGCKIG WKVGLA LA+ASVP
Sbjct: 121 SSSSSGQLVPPQTKEEMAAKAKVEENVTAIVGEKKMETWNGCKIGKWKVGLAWLAVASVP 180
Query: 181 MVIFSLRCLGLHDEEEQFPFLLVPT 200
MV+FSLRCLG HDE+EQFPFLLVPT
Sbjct: 181 MVVFSLRCLGFHDEDEQFPFLLVPT 204
BLAST of CsGy1G000440 vs. ExPASy TrEMBL
Match:
A0A5D3BFC1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold350G00430 PE=4 SV=1)
HSP 1 Score: 302 bits (773), Expect = 5.85e-102
Identity = 161/207 (77.78%), Postives = 176/207 (85.02%), Query Frame = 0
Query: 1 MLPFSQQEKDAELISTLNRHATPSSSWKIRTNKLAYEEIRTERRAAIASGNLKARRLSYD 60
MLPFSQQE+D ELIS+LNRH TP S+WKIRTN+LAY++IR ERRAAIASGNLK RRLSYD
Sbjct: 1 MLPFSQQEED-ELISSLNRHGTPPSNWKIRTNQLAYDDIRRERRAAIASGNLKGRRLSYD 60
Query: 61 DAIDMSLHLNTNFLLHGDYLDEFPQDDDQMI--PSSDPGEEKAEQV--CLNALSYSCASS 120
DA+DMSLHL LHGDYLDEFP DDQ+I SSD GEEKAEQV CLNALSYSCASS
Sbjct: 61 DAVDMSLHLKNTDFLHGDYLDEFPDQDDQIIIQSSSDSGEEKAEQVPVCLNALSYSCASS 120
Query: 121 SSSS---GKFVPLQMKEQMAAKAEVEENVRAVVGEIKMETRNGCKIGNWKVGLACLAIAS 180
SSSS G+ VP Q KE+MAAKA+VEENV A+VGE KMET NGCKIG WKVGLA LA+AS
Sbjct: 121 SSSSSSSGQLVPPQTKEEMAAKAKVEENVTAIVGEKKMETWNGCKIGKWKVGLAWLAVAS 180
Query: 181 VPMVIFSLRCLGLHDEEEQFPFLLVPT 200
VPMV+FSLRCL HDE+EQFPFLLVPT
Sbjct: 181 VPMVVFSLRCLWFHDEDEQFPFLLVPT 206
BLAST of CsGy1G000440 vs. ExPASy TrEMBL
Match:
A0A6J1C0G4 (uncharacterized protein LOC111006938 OS=Momordica charantia OX=3673 GN=LOC111006938 PE=4 SV=1)
HSP 1 Score: 66.6 bits (161), Expect = 2.22e-10
Identity = 51/120 (42.50%), Postives = 63/120 (52.50%), Query Frame = 0
Query: 5 SQQEKDAELISTLNRHATP----SSSWKIRTNKLAYEEIRTERRAAIASGNLKARRLSYD 64
S E + ELIS L R + SS+WKIRTN+LA E R ERRAA A+ + AR+LSY+
Sbjct: 7 SGPEDEEELISYLQRRGSATLSGSSTWKIRTNELAQHEFRRERRAAAAA--IAARKLSYE 66
Query: 65 DAIDMSLHLNTNFLLHGDYLDEFPQDDDQMIPSSDPGEEKAEQVCLNALSYSCASSSSSS 120
D + SS+ G ++ VCLNALSYS ASSSSSS
Sbjct: 67 DLL-----------------------------SSEDGNQQQFPVCLNALSYSSASSSSSS 95
BLAST of CsGy1G000440 vs. ExPASy TrEMBL
Match:
A0A7N2MM31 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1)
HSP 1 Score: 68.6 bits (166), Expect = 2.82e-10
Identity = 61/202 (30.20%), Postives = 88/202 (43.56%), Query Frame = 0
Query: 13 LISTLNRHATP-SSSWKIRTNKLAYEEIRTERRAAIASGNLKARRLSYDDAIDMSLHLNT 72
L+S+L + +P +WK+RTN LA EEIR ER+A I SG LK RRL D + +
Sbjct: 71 LMSSLQKRLSPPEGAWKVRTNDLAMEEIRRERKAVIESGRLKGRRLFEADESETEMGFGW 130
Query: 73 NFLLHGDYLDEFPQDDDQMIPSSDPGEEKAE--------QVCLNALSYSCASSSSSSGKF 132
+ E S D E VC C SSSSS
Sbjct: 131 KEKICNGLAQESEVRSVSFCDSDDDHHENETGGMISNVLPVCFQC----CCSSSSSLSSL 190
Query: 133 VPLQMKEQMAAKAEVEENVRAVVGEIKMETRNGCKIGN---WKVGLACLAIASV--PMVI 192
++++ V E+ + VV ++M + GN W V + LAIAS+ + I
Sbjct: 191 SSFSLRDEYVKGEVVVEDEKKVVASVEMRRDSYGGSGNGRRWMVVMGWLAIASIVYAICI 250
Query: 193 FSLRCLGLHDEEEQFPFLLVPT 200
+R G + +E + +LVPT
Sbjct: 251 VPMRSFGGYRDEHEM--ILVPT 266
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| KGN63472.1 | 1.76e-136 | 98.50 | hypothetical protein Csa_014116 [Cucumis sativus] | [more] |
| KAA0057761.1 | 9.69e-103 | 79.02 | hypothetical protein E6C27_scaffold274G00440 [Cucumis melo var. makuwa] | [more] |
| TYJ98442.1 | 1.21e-101 | 77.78 | hypothetical protein E5676_scaffold350G00430 [Cucumis melo var. makuwa] | [more] |
| KAG6589372.1 | 2.27e-47 | 53.18 | hypothetical protein SDJN03_14795, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
| XP_022134742.1 | 4.59e-10 | 42.50 | uncharacterized protein LOC111006938 [Momordica charantia] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| A0A0A0LRR5 | 8.54e-137 | 98.50 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G001440 PE=4 SV=1 | [more] |
| A0A5A7UWC4 | 4.69e-103 | 79.02 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
| A0A5D3BFC1 | 5.85e-102 | 77.78 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
| A0A6J1C0G4 | 2.22e-10 | 42.50 | uncharacterized protein LOC111006938 OS=Momordica charantia OX=3673 GN=LOC111006... | [more] |
| A0A7N2MM31 | 2.82e-10 | 30.20 | Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1 | [more] |
| Match Name | E-value | Identity | Description | |
|---|
