Cp4.1LG20g08500 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG20g08500
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	dof zinc finger protein DOF3.6-like
Location	Cp4.1LG20: 7378828 .. 7380372 (-)
RNA-Seq Expression	Cp4.1LG20g08500
Synteny	Cp4.1LG20g08500

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTAAATGCATGAGATGAGAGGCACTTTATTCCCCTTCTCCCTTTATGAGTGCATAGGTGAAAGCTTATAAGCTAAGTAAGCTAAGTAAGCTCCTTCCACTAAAACCCTAAAAATACAATAAAACAAAAAGATAAAGAAGAGAATGAAGGGAATAAGAGACCAAACTTCATCAAAAGCTTCCTCTCCATACCTTTAATTCTCTTCTTCCTTTTCTCTTTTANACCCTAAAAATACAATAAAACAAAAAGATAAAGAAGAGAATGAAGGGAATAAGAGACCAAACTTCATCAAAAGCTTCCTCTCCATACCTTTAATTCTCTTCTTCCTTTTCTCTTTTACCTTCGTCTCTGCTTACGATTCTCCGAACGCATCGAATTCCGCTTTATAAAAGGATAAAAGATCAGTCCTTCCATGGATTTCTCCTCTCTTCCACTCTTTTTAGATCCTCCTCCCAATTGCCTTCAGGTTAGGGTTTTGTGTTCTTTTCCTTCTTCTTCTTGAATATCCCAAATATCTCAACTTTTTCTTTATTGGGTTTTTTTGCAGCCATCAAATCATGTTGGTGGCGGTGGAGTTAGCTCGATTCGACGCGGTTCCATGGCCGACCGAGCTCGGTTGGCTAACGTACCTCTACCGGAGATGGCCCTCAAGTGTCCTAGATGTGATTCAACCAACACCAAATTTTGTTACTTCAATAACTATAGTCTCTCTCAACCGCGCCATTTCTGTAAGGCTTGTCGCCGATATTGGACTCGTGGTGGTGCTCTTCGGAACGTCCCGGTTGGAGGCGGTTGTCGTCGGAATAAGAAGATTAAAACTCGACGCTCGAAGTCTCCGGTAGCTCGGAATGAAACTCAGCTGAATGTTATTGGTGATTTACAGCCTCAAAATCCTCCCCTTTCATTCATGGCTTCATTCAACAATTTTCCTCAGTATGGAACAATGAATTTAGGGTTGAATTTCAATGATATTGGAAACGATGCTCTTCAGAATCATCAATGGCGCAGTGTCATGAACTTTCCTGTCTCAGGTGGCTTAGAAACCCCATCGGGATGGTACCCAACAAATTCAAGCCTAATACCAAATTCAAGAGCGACCCAGTTGCCTTTAGGGAAGATTGAAGATAACCCAAGTGCTGAATTTGGTGAAATCCTCAAATTTGGGTATCAATAATTGTGATAAGCAATGGAAATGGGTGCACAGATCTTTCAGCTGCTATCAGTTCTTCTTCAAGTGGCGCCTCCCACGGCTTTGCAGTAAGTTTCATTGATATATATATCAACTTACCAAGATTTAAATGGTCAAGTGAGTTGACGAATGATTAAAAGAAAAAAAGACATCACTTGATCAGTTAAATCTTTTATTAAGCTACTTAGGCTTTATAGATGTTAATCATAACAAAATATTGTTTTTTTTTTTTCATTTCAATTTCTTTTGAGAATATGTGTGATTATGATCAGCATATGTTTATGTTTGTTAAGGTACTGAAATCGATCGAGTTGAATCTACATGGAAGAATGTTTTTTTGTTTGTGTATAAAATGGA

mRNA sequence

TTAAATGCATGAGATGAGAGGCACTTTATTCCCCTTCTCCCTTTATGAGTGCATAGGTGAAAGCTTATAAGCTAAGTAAGCTAAGTAAGCTCCTTCCACTAAAACCCTAAAAATACAATAAAACAAAAAGATAAAGAAGAGAATGAAGGGAATAAGAGACCAAACTTCATCAAAAGCTTCCTCTCCATACCTTTAATTCTCTTCTTCCTTTTCTCTTTTANACCCTAAAAATACAATAAAACAAAAAGATAAAGAAGAGAATGAAGGGAATAAGAGACCAAACTTCATCAAAAGCTTCCTCTCCATACCTTTAATTCTCTTCTTCCTTTTCTCTTTTACCTTCGTCTCTGCTTACGATTCTCCGAACGCATCGAATTCCGCTTTATAAAAGGATAAAAGATCAGTCCTTCCATGGATTTCTCCTCTCTTCCACTCTTTTTAGATCCTCCTCCCAATTGCCTTCAGCCATCAAATCATGTTGGTGGCGGTGGAGTTAGCTCGATTCGACGCGGTTCCATGGCCGACCGAGCTCGGTTGGCTAACGTACCTCTACCGGAGATGGCCCTCAAGTGTCCTAGATGTGATTCAACCAACACCAAATTTTGTTACTTCAATAACTATAGTCTCTCTCAACCGCGCCATTTCTGTAAGGCTTGTCGCCGATATTGGACTCGTGGTGGTGCTCTTCGGAACGTCCCGGTTGGAGGCGGTTGTCGTCGGAATAAGAAGATTAAAACTCGACGCTCGAAGTCTCCGGTAGCTCGGAATGAAACTCAGCTGAATGTTATTGGTGATTTACAGCCTCAAAATCCTCCCCTTTCATTCATGGCTTCATTCAACAATTTTCCTCAGTATGGAACAATGAATTTAGGGTTGAATTTCAATGATATTGGAAACGATGCTCTTCAGAATCATCAATGGCGCAGTGTCATGAACTTTCCTGTCTCAGGTGGCTTAGAAACCCCATCGGGATGGTACCCAACAAATTCAAGCCTAATACCAAATTCAAGAGCGACCCAGTTGCCTTTAGGGAAGATTGAAGATAACCCAAGTGCTGAATTTGGTGAAATCCTCAAATTTGGGTATCAATAATTGTGATAAGCAATGGAAATGGGTGCACAGATCTTTCAGCTGCTATCAGTTCTTCTTCAAGTGGCGCCTCCCACGGCTTTGCAGTAAGTTTCATTGATATATATATCAACTTACCAAGATTTAAATGGTCAAGTGAGTTGACGAATGATTAAAAGAAAAAAAGACATCACTTGATCAGTTAAATCTTTTATTAAGCTACTTAGGCTTTATAGATGTTAATCATAACAAAATATTGTTTTTTTTTTTTCATTTCAATTTCTTTTGAGAATATGTGTGATTATGATCAGCATATGTTTATGTTTGTTAAGGTACTGAAATCGATCGAGTTGAATCTACATGGAAGAATGTTTTTTTGTTTGTGTATAAAATGGA

Coding sequence (CDS)

ATGGATTTCTCCTCTCTTCCACTCTTTTTAGATCCTCCTCCCAATTGCCTTCAGCCATCAAATCATGTTGGTGGCGGTGGAGTTAGCTCGATTCGACGCGGTTCCATGGCCGACCGAGCTCGGTTGGCTAACGTACCTCTACCGGAGATGGCCCTCAAGTGTCCTAGATGTGATTCAACCAACACCAAATTTTGTTACTTCAATAACTATAGTCTCTCTCAACCGCGCCATTTCTGTAAGGCTTGTCGCCGATATTGGACTCGTGGTGGTGCTCTTCGGAACGTCCCGGTTGGAGGCGGTTGTCGTCGGAATAAGAAGATTAAAACTCGACGCTCGAAGTCTCCGGTAGCTCGGAATGAAACTCAGCTGAATGTTATTGGTGATTTACAGCCTCAAAATCCTCCCCTTTCATTCATGGCTTCATTCAACAATTTTCCTCAGTATGGAACAATGAATTTAGGGTTGAATTTCAATGATATTGGAAACGATGCTCTTCAGAATCATCAATGGCGCAGTGTCATGAACTTTCCTGTCTCAGGTGGCTTAGAAACCCCATCGGGATGGTACCCAACAAATTCAAGCCTAATACCAAATTCAAGAGCGACCCAGTTGCCTTTAGGGAAGATTGAAGATAACCCAAGTGCTGAATTTGGTGAAATCCTCAAATTTGGGTATCAATAA

Protein sequence

MDFSSLPLFLDPPPNCLQPSNHVGGGGVSSIRRGSMADRARLANVPLPEMALKCPRCDSTNTKFCYFNNYSLSQPRHFCKACRRYWTRGGALRNVPVGGGCRRNKKIKTRRSKSPVARNETQLNVIGDLQPQNPPLSFMASFNNFPQYGTMNLGLNFNDIGNDALQNHQWRSVMNFPVSGGLETPSGWYPTNSSLIPNSRATQLPLGKIEDNPSAEFGEILKFGYQ

Homology

[Close]

BLAST of Cp4.1LG20g08500 vs. ExPASy Swiss-Prot
Match: O80928 (Dof zinc finger protein DOF2.4 OS=Arabidopsis thaliana OX=3702 GN=DOF2.4 PE=2 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 2.1e-38
Identity = 76/103 (73.79%), Postives = 83/103 (80.58%), Query Frame = 0


Query: 12  PPPNCLQPSNHVGGGGVSSIRRGSMADRARLANVPLPEMALKCPRCDSTNTKFCYFNNYS 71
           P PN    S   GGGG  SIR GSM DRAR ANV LPE ALKCPRC+STNTKFCYFNNYS
Sbjct: 52  PHPN---GSGGGGGGGGGSIRAGSMVDRARQANVALPEAALKCPRCESTNTKFCYFNNYS 111

Query: 72  LSQPRHFCKACRRYWTRGGALRNVPVGGGCRRNKKIKTRRSKS 115
           L+QPRHFCK CRRYWTRGGALRNVPVGGGCRRN++ K+  + +
Sbjct: 112 LTQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNRRTKSNSNNN 151

[Close]

BLAST of Cp4.1LG20g08500 vs. ExPASy Swiss-Prot
Match: Q9LZ56 (Dof zinc finger protein DOF5.1 OS=Arabidopsis thaliana OX=3702 GN=DOF5.1 PE=2 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 2.1e-38
Identity = 73/86 (84.88%), Postives = 78/86 (90.70%), Query Frame = 0


Query: 23  VGGGGVSSIRRGSMADRARLANVPLPEMALKCPRCDSTNTKFCYFNNYSLSQPRHFCKAC 82
           V GG    IR GSMA+RARLAN+PLPE ALKCPRCDSTNTKFCYFNNYSL+QPRHFCKAC
Sbjct: 66  VPGGPGGLIRPGSMAERARLANIPLPETALKCPRCDSTNTKFCYFNNYSLTQPRHFCKAC 125

Query: 83  RRYWTRGGALRNVPVGGGCRRNKKIK 109
           RRYWTRGGALR+VPVGGGCRRNK+ K
Sbjct: 126 RRYWTRGGALRSVPVGGGCRRNKRTK 151

[Close]

BLAST of Cp4.1LG20g08500 vs. ExPASy Swiss-Prot
Match: Q9M2U1 (Dof zinc finger protein DOF3.6 OS=Arabidopsis thaliana OX=3702 GN=DOF3.6 PE=1 SV=2)

HSP 1 Score: 152.5 bits (384), Expect = 5.6e-36
Identity = 78/156 (50.00%), Postives = 95/156 (60.90%), Query Frame = 0


Query: 19  PSNHVGGGGVSSIRRGSMADRARLANVPLPEMALKCPRCDSTNTKFCYFNNYSLSQPRHF 78
           P++ V G   S  R  SM +RAR+A VPLPE AL CPRCDSTNTKFCYFNNYSL+QPRHF
Sbjct: 45  PTSQVAGS--SQARVNSMVERARIAKVPLPEAALNCPRCDSTNTKFCYFNNYSLTQPRHF 104

Query: 79  CKACRRYWTRGGALRNVPVGGGCRRNKKIKTRRSKS-----------------PVARNET 138
           CK CRRYWTRGG+LRNVPVGGG RRNK+ K+R   +                 P   N +
Sbjct: 105 CKTCRRYWTRGGSLRNVPVGGGFRRNKRSKSRSKSTVVVSTDNTTSTSSLTSRPSYSNPS 164

Query: 139 QLNVIGDLQPQNPPLSFMASFNNFPQYGTMNLGLNF 158
           + +  G +   N  L  +    +   Y + N GL+F
Sbjct: 165 KFHSYGQIPEFNSNLPILPPLQSLGDYNSSNTGLDF 198

[Close]

BLAST of Cp4.1LG20g08500 vs. ExPASy Swiss-Prot
Match: Q9ZV33 (Dof zinc finger protein DOF2.2 OS=Arabidopsis thaliana OX=3702 GN=DOF2.2 PE=2 SV=2)

HSP 1 Score: 146.4 bits (368), Expect = 4.0e-34
Identity = 80/143 (55.94%), Postives = 94/143 (65.73%), Query Frame = 0


Query: 34  GSMADRARLA-NVPLPEMALKCPRCDSTNTKFCYFNNYSLSQPRHFCKACRRYWTRGGAL 93
           G  A+RARLA N   PE ALKCPRCDS NTKFCYFNNY+L+QPRHFCKACRRYWTRGGAL
Sbjct: 75  GQAAERARLAKNSQPPEGALKCPRCDSANTKFCYFNNYNLTQPRHFCKACRRYWTRGGAL 134

Query: 94  RNVPVGGGCRRNKKIKTRRSK-SPVARNETQLNVIGDLQP---------QNPPLSFMASF 153
           RNVPVGGGCRRNKK K+  SK S  ++N+   +++    P          N    F+ + 
Sbjct: 135 RNVPVGGGCRRNKKGKSGNSKSSSSSQNKQSTSMVNATSPTNTSNVQLQTNSQFPFLPTL 194

Query: 154 NNFPQYGTMNLGL---NFNDIGN 163
            N  Q G + L L   N N+ GN
Sbjct: 195 QNLTQLGGIGLNLAAINGNNGGN 217

[Close]

BLAST of Cp4.1LG20g08500 vs. ExPASy Swiss-Prot
Match: Q8L9V6 (Dof zinc finger protein DOF1.1 OS=Arabidopsis thaliana OX=3702 GN=DOF1.1 PE=1 SV=2)

HSP 1 Score: 142.9 bits (359), Expect = 4.4e-33
Identity = 81/167 (48.50%), Postives = 99/167 (59.28%), Query Frame = 0


Query: 7   PLFLDPPPNCLQPSNHVG-GGGVSSIRRGSMADRARLANVPLPEMALKCPRCDSTNTKFC 66
           PL  +P PN     +HV    G+ S   GSMA+RAR AN+P     LKCPRCDS+NTKFC
Sbjct: 35  PLQANPNPN----HHHVATSAGLPSRMGGSMAERARQANIPPLAGPLKCPRCDSSNTKFC 94

Query: 67  YFNNYSLSQPRHFCKACRRYWTRGGALRNVPVGGGCRRNKKIKTR---RSKSPVARNETQ 126
           Y+NNY+L+QPRHFCK CRRYWT+GGALRNVPVGGGCRRN K       +S S  ++  + 
Sbjct: 95  YYNNYNLTQPRHFCKGCRRYWTQGGALRNVPVGGGCRRNNKKGKNGNLKSSSSSSKQSSS 154

Query: 127 LNVIGDLQPQ---NPPLSFMASFNNFPQYGTMNLGLNFNDIGNDALQ 167
           +N       Q   N    F  +  N  Q G + L L   +  N A Q
Sbjct: 155 VNAQSPSSGQLRTNHQFPFSPTLYNLTQLGGIGLNLAATNGNNQAHQ 197

[Close]

BLAST of Cp4.1LG20g08500 vs. NCBI nr
Match: KAG6583435.1 (Dof zinc finger protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 465 bits (1197), Expect = 1.62e-165
Identity = 220/226 (97.35%), Postives = 222/226 (98.23%), Query Frame = 0


Query: 1   MDFSSLPLFLDPPPNCLQPSNHVGGGGVSSIRRGSMADRARLANVPLPEMALKCPRCDST 60
           MDFSSLPLFLDPPPNCLQPSNHVGGGGVSSIRRGSMADRARLANVPLPEMALKCPRCDST
Sbjct: 1   MDFSSLPLFLDPPPNCLQPSNHVGGGGVSSIRRGSMADRARLANVPLPEMALKCPRCDST 60

Query: 61  NTKFCYFNNYSLSQPRHFCKACRRYWTRGGALRNVPVGGGCRRNKKIKTRRSKSPVARNE 120
           NTKFCYFNNYSLSQPRHFCKACRRYWTRGGALRNVPVGGGCRRNKKIKTRRSKSPVARNE
Sbjct: 61  NTKFCYFNNYSLSQPRHFCKACRRYWTRGGALRNVPVGGGCRRNKKIKTRRSKSPVARNE 120

Query: 121 TQLNVIGDLQPQNPPLSFMASFNNFPQYGTMNLGLNFNDIGNDALQNHQWRSVMNFPVSG 180
           TQLNVIGDLQPQNPPLSFMASFNNFPQYGTMNLGLNFNDIGNDALQNHQWRSVMN P+SG
Sbjct: 121 TQLNVIGDLQPQNPPLSFMASFNNFPQYGTMNLGLNFNDIGNDALQNHQWRSVMNCPISG 180

Query: 181 GLETPSGWYPTNSSLIPNSRATQLPLGKIEDNPSAEFGEILKFGYQ 226
           GLETP+GWYPTNS   PNSRATQLPLGKIEDNPSAEFGEILKFGYQ
Sbjct: 181 GLETPTGWYPTNSIPTPNSRATQLPLGKIEDNPSAEFGEILKFGYQ 226

[Close]

BLAST of Cp4.1LG20g08500 vs. NCBI nr
Match: XP_022964970.1 (dof zinc finger protein DOF3.6-like [Cucurbita moschata])

HSP 1 Score: 465 bits (1196), Expect = 2.30e-165
Identity = 219/226 (96.90%), Postives = 222/226 (98.23%), Query Frame = 0


Query: 1   MDFSSLPLFLDPPPNCLQPSNHVGGGGVSSIRRGSMADRARLANVPLPEMALKCPRCDST 60
           MDFSSLPLFLDPPPNCLQPSNHVGGGGVSSIRRGSMADRARLANVPLPEMALKCPRCDST
Sbjct: 1   MDFSSLPLFLDPPPNCLQPSNHVGGGGVSSIRRGSMADRARLANVPLPEMALKCPRCDST 60

Query: 61  NTKFCYFNNYSLSQPRHFCKACRRYWTRGGALRNVPVGGGCRRNKKIKTRRSKSPVARNE 120
           NTKFCYFNNYSLSQPRHFCKACRRYWTRGGALRNVPVGGGCRRNKKIKTRRSKSP+ARNE
Sbjct: 61  NTKFCYFNNYSLSQPRHFCKACRRYWTRGGALRNVPVGGGCRRNKKIKTRRSKSPIARNE 120

Query: 121 TQLNVIGDLQPQNPPLSFMASFNNFPQYGTMNLGLNFNDIGNDALQNHQWRSVMNFPVSG 180
           TQLNVIGDLQPQNPPLSFMASFNNFPQYGTMNLGLNFNDIGNDALQNHQWRSVMN P+SG
Sbjct: 121 TQLNVIGDLQPQNPPLSFMASFNNFPQYGTMNLGLNFNDIGNDALQNHQWRSVMNCPISG 180

Query: 181 GLETPSGWYPTNSSLIPNSRATQLPLGKIEDNPSAEFGEILKFGYQ 226
           GLETP+GWYPTNS   PNSRATQLPLGKIEDNPSAEFGEILKFGYQ
Sbjct: 181 GLETPTGWYPTNSIPTPNSRATQLPLGKIEDNPSAEFGEILKFGYQ 226

[Close]

BLAST of Cp4.1LG20g08500 vs. NCBI nr
Match: KAG7019198.1 (Dof zinc finger protein DOF5.1 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 463 bits (1191), Expect = 1.33e-164
Identity = 219/226 (96.90%), Postives = 221/226 (97.79%), Query Frame = 0


Query: 1   MDFSSLPLFLDPPPNCLQPSNHVGGGGVSSIRRGSMADRARLANVPLPEMALKCPRCDST 60
           MDFSSLPLFLDPPPNCLQPSNHVGGGGVSSIRRGSMADRARLANVPLPEMALKCPRCDST
Sbjct: 1   MDFSSLPLFLDPPPNCLQPSNHVGGGGVSSIRRGSMADRARLANVPLPEMALKCPRCDST 60

Query: 61  NTKFCYFNNYSLSQPRHFCKACRRYWTRGGALRNVPVGGGCRRNKKIKTRRSKSPVARNE 120
           NTKFCYFNNYSLSQPRHFCKACRRYWTRGGALRNVPVGGGCRRNKKIKTRRSKSPVARNE
Sbjct: 61  NTKFCYFNNYSLSQPRHFCKACRRYWTRGGALRNVPVGGGCRRNKKIKTRRSKSPVARNE 120

Query: 121 TQLNVIGDLQPQNPPLSFMASFNNFPQYGTMNLGLNFNDIGNDALQNHQWRSVMNFPVSG 180
           TQLNVIGDLQPQNPPLSFMASFNN PQYGTMNLGLNFNDIGNDALQNHQWRSVMN P+SG
Sbjct: 121 TQLNVIGDLQPQNPPLSFMASFNNIPQYGTMNLGLNFNDIGNDALQNHQWRSVMNCPISG 180

Query: 181 GLETPSGWYPTNSSLIPNSRATQLPLGKIEDNPSAEFGEILKFGYQ 226
           GLETP+GWYPTNS   PNSRATQLPLGKIEDNPSAEFGEILKFGYQ
Sbjct: 181 GLETPTGWYPTNSIPTPNSRATQLPLGKIEDNPSAEFGEILKFGYQ 226

[Close]

BLAST of Cp4.1LG20g08500 vs. NCBI nr
Match: XP_022970568.1 (dof zinc finger protein DOF3.6-like [Cucurbita maxima])

HSP 1 Score: 455 bits (1171), Expect = 1.49e-161
Identity = 216/226 (95.58%), Postives = 218/226 (96.46%), Query Frame = 0


Query: 1   MDFSSLPLFLDPPPNCLQPSNHVGGGGVSSIRRGSMADRARLANVPLPEMALKCPRCDST 60
           MDFSSLPLFLDPPPNCLQPSNHVGGGGVSSIRRGSMADRARLANVPLPEMALKCPRCDST
Sbjct: 1   MDFSSLPLFLDPPPNCLQPSNHVGGGGVSSIRRGSMADRARLANVPLPEMALKCPRCDST 60

Query: 61  NTKFCYFNNYSLSQPRHFCKACRRYWTRGGALRNVPVGGGCRRNKKIKTRRSKSPVARNE 120
           NTKFCYFNNYSLSQPRHFCKACRRYWTRGGALRNVPVGGGCRRNKKIKTRRSKSPVARNE
Sbjct: 61  NTKFCYFNNYSLSQPRHFCKACRRYWTRGGALRNVPVGGGCRRNKKIKTRRSKSPVARNE 120

Query: 121 TQLNVIGDLQPQNPPLSFMASFNNFPQYGTMNLGLNFNDIGNDALQNHQWRSVMNFPVSG 180
           TQLNVIGDLQPQNPPLSFMAS NNFPQYGTMNLGLNFNDIGNDALQNHQWRS MN P+SG
Sbjct: 121 TQLNVIGDLQPQNPPLSFMASLNNFPQYGTMNLGLNFNDIGNDALQNHQWRSFMNCPISG 180

Query: 181 GLETPSGWYPTNSSLIPNSRATQLPLGKIEDNPSAEFGEILKFGYQ 226
           GLETP+GWYPTNS   PNSRATQLPLGKIED PSAEF EILKFGYQ
Sbjct: 181 GLETPTGWYPTNSIPTPNSRATQLPLGKIEDTPSAEFVEILKFGYQ 226

[Close]

BLAST of Cp4.1LG20g08500 vs. NCBI nr
Match: KAG6607235.1 (Dof zinc finger protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 304 bits (779), Expect = 2.05e-100
Identity = 164/273 (60.07%), Postives = 178/273 (65.20%), Query Frame = 0


Query: 1   MDFSSLPLFLDPPPNCLQPSNH--------------------------VGGGGVSSIRRG 60
           MDFSS+PL+LDPPPN  Q SNH                          VG  GV SIRRG
Sbjct: 1   MDFSSVPLYLDPPPNWHQQSNHHHHHLQIPNNGSPHHLQPSSTALPSHVGATGVGSIRRG 60

Query: 61  SMADRARLANVPLPEMALKCPRCDSTNTKFCYFNNYSLSQPRHFCKACRRYWTRGGALRN 120
           SM DRARLAN+PLPE ALKCPRCDS+NTKFCYFNNYSLSQPRHFCK CRRYWTRGGALRN
Sbjct: 61  SMVDRARLANIPLPETALKCPRCDSSNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRN 120

Query: 121 VPVGGGCRRNKKIKTRRSKSPVARNETQLN-------------------VIGDLQPQNPP 180
           VPVGGGCRRNKK K+RRSKSP  RNET  N                   +IG LQPQNP 
Sbjct: 121 VPVGGGCRRNKKNKSRRSKSPATRNETSNNNNSNSPTNTIPLHSSNAENIIGQLQPQNPH 180

Query: 181 LSFMASFNNFPQYGTMNLGLNFN-------DIGNDALQNHQWRSVMNFPVSGGLETPSGW 211
           LSFMA+ NNF +YGT NLGL+FN       DIGN AL NH WR+  +FP+S  LETP+  
Sbjct: 181 LSFMATLNNFSRYGTANLGLSFNEIQTQPGDIGNSALLNHHWRNSQSFPLSADLETPTAL 240

[Close]

BLAST of Cp4.1LG20g08500 vs. ExPASy TrEMBL
Match: A0A6J1HMD4 (dof zinc finger protein DOF3.6-like OS=Cucurbita moschata OX=3662 GN=LOC111464919 PE=4 SV=1)

HSP 1 Score: 465 bits (1196), Expect = 1.11e-165
Identity = 219/226 (96.90%), Postives = 222/226 (98.23%), Query Frame = 0


Query: 1   MDFSSLPLFLDPPPNCLQPSNHVGGGGVSSIRRGSMADRARLANVPLPEMALKCPRCDST 60
           MDFSSLPLFLDPPPNCLQPSNHVGGGGVSSIRRGSMADRARLANVPLPEMALKCPRCDST
Sbjct: 1   MDFSSLPLFLDPPPNCLQPSNHVGGGGVSSIRRGSMADRARLANVPLPEMALKCPRCDST 60

Query: 61  NTKFCYFNNYSLSQPRHFCKACRRYWTRGGALRNVPVGGGCRRNKKIKTRRSKSPVARNE 120
           NTKFCYFNNYSLSQPRHFCKACRRYWTRGGALRNVPVGGGCRRNKKIKTRRSKSP+ARNE
Sbjct: 61  NTKFCYFNNYSLSQPRHFCKACRRYWTRGGALRNVPVGGGCRRNKKIKTRRSKSPIARNE 120

Query: 121 TQLNVIGDLQPQNPPLSFMASFNNFPQYGTMNLGLNFNDIGNDALQNHQWRSVMNFPVSG 180
           TQLNVIGDLQPQNPPLSFMASFNNFPQYGTMNLGLNFNDIGNDALQNHQWRSVMN P+SG
Sbjct: 121 TQLNVIGDLQPQNPPLSFMASFNNFPQYGTMNLGLNFNDIGNDALQNHQWRSVMNCPISG 180

Query: 181 GLETPSGWYPTNSSLIPNSRATQLPLGKIEDNPSAEFGEILKFGYQ 226
           GLETP+GWYPTNS   PNSRATQLPLGKIEDNPSAEFGEILKFGYQ
Sbjct: 181 GLETPTGWYPTNSIPTPNSRATQLPLGKIEDNPSAEFGEILKFGYQ 226

[Close]

BLAST of Cp4.1LG20g08500 vs. ExPASy TrEMBL
Match: A0A6J1I4A1 (dof zinc finger protein DOF3.6-like OS=Cucurbita maxima OX=3661 GN=LOC111469505 PE=4 SV=1)

HSP 1 Score: 455 bits (1171), Expect = 7.22e-162
Identity = 216/226 (95.58%), Postives = 218/226 (96.46%), Query Frame = 0


Query: 1   MDFSSLPLFLDPPPNCLQPSNHVGGGGVSSIRRGSMADRARLANVPLPEMALKCPRCDST 60
           MDFSSLPLFLDPPPNCLQPSNHVGGGGVSSIRRGSMADRARLANVPLPEMALKCPRCDST
Sbjct: 1   MDFSSLPLFLDPPPNCLQPSNHVGGGGVSSIRRGSMADRARLANVPLPEMALKCPRCDST 60

Query: 61  NTKFCYFNNYSLSQPRHFCKACRRYWTRGGALRNVPVGGGCRRNKKIKTRRSKSPVARNE 120
           NTKFCYFNNYSLSQPRHFCKACRRYWTRGGALRNVPVGGGCRRNKKIKTRRSKSPVARNE
Sbjct: 61  NTKFCYFNNYSLSQPRHFCKACRRYWTRGGALRNVPVGGGCRRNKKIKTRRSKSPVARNE 120

Query: 121 TQLNVIGDLQPQNPPLSFMASFNNFPQYGTMNLGLNFNDIGNDALQNHQWRSVMNFPVSG 180
           TQLNVIGDLQPQNPPLSFMAS NNFPQYGTMNLGLNFNDIGNDALQNHQWRS MN P+SG
Sbjct: 121 TQLNVIGDLQPQNPPLSFMASLNNFPQYGTMNLGLNFNDIGNDALQNHQWRSFMNCPISG 180

Query: 181 GLETPSGWYPTNSSLIPNSRATQLPLGKIEDNPSAEFGEILKFGYQ 226
           GLETP+GWYPTNS   PNSRATQLPLGKIED PSAEF EILKFGYQ
Sbjct: 181 GLETPTGWYPTNSIPTPNSRATQLPLGKIEDTPSAEFVEILKFGYQ 226

[Close]

BLAST of Cp4.1LG20g08500 vs. ExPASy TrEMBL
Match: A0A6J1K6H5 (dof zinc finger protein DOF3.6-like OS=Cucurbita maxima OX=3661 GN=LOC111492744 PE=4 SV=1)

HSP 1 Score: 302 bits (773), Expect = 7.82e-100
Identity = 162/273 (59.34%), Postives = 177/273 (64.84%), Query Frame = 0


Query: 1   MDFSSLPLFLDPPPNCLQPSNH--------------------------VGGGGVSSIRRG 60
           MDFSS+PL+LDPPPN  Q SNH                          VG  G+ SIRRG
Sbjct: 1   MDFSSVPLYLDPPPNWHQQSNHHHHHLQIPNNGSPHHLQPSSTALPSHVGATGIGSIRRG 60

Query: 61  SMADRARLANVPLPEMALKCPRCDSTNTKFCYFNNYSLSQPRHFCKACRRYWTRGGALRN 120
           SM DRARLAN+PLPE ALKCPRCDS+NTKFCYFNNYSLSQPRHFCK CRRYWTRGGALRN
Sbjct: 61  SMVDRARLANIPLPETALKCPRCDSSNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRN 120

Query: 121 VPVGGGCRRNKKIKTRRSKSPVARNETQLN-------------------VIGDLQPQNPP 180
           VPVGGGCRRNKK K+RRSKSP   NET  N                   +IG LQPQNP 
Sbjct: 121 VPVGGGCRRNKKNKSRRSKSPATGNETSNNNNSNSPTNTIPLHSSNAENIIGQLQPQNPH 180

Query: 181 LSFMASFNNFPQYGTMNLGLNFN-------DIGNDALQNHQWRSVMNFPVSGGLETPSGW 211
           LSFMA+ NNF +YGT NLGL+FN       DIGN  L NH WR+  +FP+S  LETP+G 
Sbjct: 181 LSFMATLNNFSRYGTANLGLSFNEIQTQAGDIGNSTLLNHHWRNSQSFPLSADLETPTGL 240

[Close]

BLAST of Cp4.1LG20g08500 vs. ExPASy TrEMBL
Match: A0A6J1G9K4 (dof zinc finger protein DOF3.6-like OS=Cucurbita moschata OX=3662 GN=LOC111452186 PE=4 SV=1)

HSP 1 Score: 302 bits (773), Expect = 7.82e-100
Identity = 163/272 (59.93%), Postives = 177/272 (65.07%), Query Frame = 0


Query: 1   MDFSSLPLFLDPPPNCLQPSNH-------------------------VGGGGVSSIRRGS 60
           MDFSS+PL+LDPPPN  Q SNH                         VG  GV SIRRGS
Sbjct: 1   MDFSSVPLYLDPPPNWHQQSNHHHHLHIPNNGSPHHLQPSSTALPSHVGATGVGSIRRGS 60

Query: 61  MADRARLANVPLPEMALKCPRCDSTNTKFCYFNNYSLSQPRHFCKACRRYWTRGGALRNV 120
           M DRARLAN+PLPE ALKCPRCDS+NTKFCYFNNYSLSQPRHFCK CRRYWTRGGALRNV
Sbjct: 61  MVDRARLANIPLPETALKCPRCDSSNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNV 120

Query: 121 PVGGGCRRNKKIKTRRSKSPVARNETQLN-------------------VIGDLQPQNPPL 180
           PVGGGCRRNKK K+RRSKSP   NET  N                   +IG LQPQNP L
Sbjct: 121 PVGGGCRRNKKNKSRRSKSPATGNETSNNNNSNSPTNTIPLHSSNAENIIGQLQPQNPHL 180

Query: 181 SFMASFNNFPQYGTMNLGLNFN-------DIGNDALQNHQWRSVMNFPVSGGLETPSGWY 211
           SFMA+ NNF +YGT NLGL+FN       DIGN AL NH WR+  +FP+S  LETP+  Y
Sbjct: 181 SFMATLNNFSRYGTANLGLSFNEIQTQPGDIGNSALLNHHWRNSQSFPLSADLETPTALY 240

[Close]

BLAST of Cp4.1LG20g08500 vs. ExPASy TrEMBL
Match: A0A5D3DEG4 (Dof zinc finger protein DOF3.6 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold710G00070 PE=4 SV=1)

HSP 1 Score: 295 bits (756), Expect = 3.85e-97
Identity = 167/280 (59.64%), Postives = 183/280 (65.36%), Query Frame = 0


Query: 1   MDFSSLPLFLDPPPN-------------------------CLQPSNHVGGG-GVSSIRRG 60
           MDFSS+P++LDPPPN                            PS+HVG G GV SIRRG
Sbjct: 1   MDFSSVPIYLDPPPNWHHQISNSDGSPQHQHLLSLPTQQLSSAPSSHVGVGVGVGSIRRG 60

Query: 61  SMADRARLANVPLPEMALKCPRCDSTNTKFCYFNNYSLSQPRHFCKACRRYWTRGGALRN 120
           SMADRAR+ANVPLPE ALKCPRCDSTNTKFCYFNNYSLSQPRHFCK+CRRYWTRGGALRN
Sbjct: 61  SMADRARMANVPLPETALKCPRCDSTNTKFCYFNNYSLSQPRHFCKSCRRYWTRGGALRN 120

Query: 121 VPVGGGCRRNKKIKTRRSKSPVAR------NETQL--------------------NVIGD 180
           VPVGGGCRRNKK KTRRSKSP A       NE+Q+                    N+IG 
Sbjct: 121 VPVGGGCRRNKKNKTRRSKSPTAAATMAGGNESQVMNNNSNSPTTATIPLHSSAENLIGH 180

Query: 181 LQPQNPPLSFMASFNNFPQYGTMNLGLNFNDI-------GNDALQNHQ-WRSVMNFPVSG 211
           LQPQ+P LSFMAS NNF ++GT +LGLNFN+I       GN AL NH  WRS  NFP+SG
Sbjct: 181 LQPQHPHLSFMASLNNFSRFGTSSLGLNFNEIQTQTNNIGNGALLNHHPWRSSQNFPLSG 240

[Close]

BLAST of Cp4.1LG20g08500 vs. TAIR 10
Match: AT2G37590.1 (DNA binding with one finger 2.4 )

HSP 1 Score: 160.6 bits (405), Expect = 1.5e-39
Identity = 76/103 (73.79%), Postives = 83/103 (80.58%), Query Frame = 0


Query: 12  PPPNCLQPSNHVGGGGVSSIRRGSMADRARLANVPLPEMALKCPRCDSTNTKFCYFNNYS 71
           P PN    S   GGGG  SIR GSM DRAR ANV LPE ALKCPRC+STNTKFCYFNNYS
Sbjct: 52  PHPN---GSGGGGGGGGGSIRAGSMVDRARQANVALPEAALKCPRCESTNTKFCYFNNYS 111

Query: 72  LSQPRHFCKACRRYWTRGGALRNVPVGGGCRRNKKIKTRRSKS 115
           L+QPRHFCK CRRYWTRGGALRNVPVGGGCRRN++ K+  + +
Sbjct: 112 LTQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNRRTKSNSNNN 151

[Close]

BLAST of Cp4.1LG20g08500 vs. TAIR 10
Match: AT5G02460.1 (Dof-type zinc finger DNA-binding family protein )

HSP 1 Score: 160.6 bits (405), Expect = 1.5e-39
Identity = 73/86 (84.88%), Postives = 78/86 (90.70%), Query Frame = 0


Query: 23  VGGGGVSSIRRGSMADRARLANVPLPEMALKCPRCDSTNTKFCYFNNYSLSQPRHFCKAC 82
           V GG    IR GSMA+RARLAN+PLPE ALKCPRCDSTNTKFCYFNNYSL+QPRHFCKAC
Sbjct: 66  VPGGPGGLIRPGSMAERARLANIPLPETALKCPRCDSTNTKFCYFNNYSLTQPRHFCKAC 125

Query: 83  RRYWTRGGALRNVPVGGGCRRNKKIK 109
           RRYWTRGGALR+VPVGGGCRRNK+ K
Sbjct: 126 RRYWTRGGALRSVPVGGGCRRNKRTK 151

[Close]

BLAST of Cp4.1LG20g08500 vs. TAIR 10
Match: AT3G55370.1 (OBF-binding protein 3 )

HSP 1 Score: 152.5 bits (384), Expect = 4.0e-37
Identity = 78/156 (50.00%), Postives = 95/156 (60.90%), Query Frame = 0


Query: 19  PSNHVGGGGVSSIRRGSMADRARLANVPLPEMALKCPRCDSTNTKFCYFNNYSLSQPRHF 78
           P++ V G   S  R  SM +RAR+A VPLPE AL CPRCDSTNTKFCYFNNYSL+QPRHF
Sbjct: 45  PTSQVAGS--SQARVNSMVERARIAKVPLPEAALNCPRCDSTNTKFCYFNNYSLTQPRHF 104

Query: 79  CKACRRYWTRGGALRNVPVGGGCRRNKKIKTRRSKS-----------------PVARNET 138
           CK CRRYWTRGG+LRNVPVGGG RRNK+ K+R   +                 P   N +
Sbjct: 105 CKTCRRYWTRGGSLRNVPVGGGFRRNKRSKSRSKSTVVVSTDNTTSTSSLTSRPSYSNPS 164

Query: 139 QLNVIGDLQPQNPPLSFMASFNNFPQYGTMNLGLNF 158
           + +  G +   N  L  +    +   Y + N GL+F
Sbjct: 165 KFHSYGQIPEFNSNLPILPPLQSLGDYNSSNTGLDF 198

[Close]

BLAST of Cp4.1LG20g08500 vs. TAIR 10
Match: AT3G55370.2 (OBF-binding protein 3 )

HSP 1 Score: 152.5 bits (384), Expect = 4.0e-37
Identity = 78/156 (50.00%), Postives = 95/156 (60.90%), Query Frame = 0


Query: 19  PSNHVGGGGVSSIRRGSMADRARLANVPLPEMALKCPRCDSTNTKFCYFNNYSLSQPRHF 78
           P++ V G   S  R  SM +RAR+A VPLPE AL CPRCDSTNTKFCYFNNYSL+QPRHF
Sbjct: 45  PTSQVAGS--SQARVNSMVERARIAKVPLPEAALNCPRCDSTNTKFCYFNNYSLTQPRHF 104

Query: 79  CKACRRYWTRGGALRNVPVGGGCRRNKKIKTRRSKS-----------------PVARNET 138
           CK CRRYWTRGG+LRNVPVGGG RRNK+ K+R   +                 P   N +
Sbjct: 105 CKTCRRYWTRGGSLRNVPVGGGFRRNKRSKSRSKSTVVVSTDNTTSTSSLTSRPSYSNPS 164

Query: 139 QLNVIGDLQPQNPPLSFMASFNNFPQYGTMNLGLNF 158
           + +  G +   N  L  +    +   Y + N GL+F
Sbjct: 165 KFHSYGQIPEFNSNLPILPPLQSLGDYNSSNTGLDF 198

[Close]

BLAST of Cp4.1LG20g08500 vs. TAIR 10
Match: AT3G55370.3 (OBF-binding protein 3 )

HSP 1 Score: 152.5 bits (384), Expect = 4.0e-37
Identity = 78/156 (50.00%), Postives = 95/156 (60.90%), Query Frame = 0


Query: 19  PSNHVGGGGVSSIRRGSMADRARLANVPLPEMALKCPRCDSTNTKFCYFNNYSLSQPRHF 78
           P++ V G   S  R  SM +RAR+A VPLPE AL CPRCDSTNTKFCYFNNYSL+QPRHF
Sbjct: 90  PTSQVAGS--SQARVNSMVERARIAKVPLPEAALNCPRCDSTNTKFCYFNNYSLTQPRHF 149

Query: 79  CKACRRYWTRGGALRNVPVGGGCRRNKKIKTRRSKS-----------------PVARNET 138
           CK CRRYWTRGG+LRNVPVGGG RRNK+ K+R   +                 P   N +
Sbjct: 150 CKTCRRYWTRGGSLRNVPVGGGFRRNKRSKSRSKSTVVVSTDNTTSTSSLTSRPSYSNPS 209

Query: 139 QLNVIGDLQPQNPPLSFMASFNNFPQYGTMNLGLNF 158
           + +  G +   N  L  +    +   Y + N GL+F
Sbjct: 210 KFHSYGQIPEFNSNLPILPPLQSLGDYNSSNTGLDF 243

The following BLAST results are available for this feature:

BLAST of Cp4.1LG20g08500 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O80928	2.1e-38	73.79	Dof zinc finger protein DOF2.4 OS=Arabidopsis thaliana OX=3702 GN=DOF2.4 PE=2 SV...	[more]
Q9LZ56	2.1e-38	84.88	Dof zinc finger protein DOF5.1 OS=Arabidopsis thaliana OX=3702 GN=DOF5.1 PE=2 SV...	[more]
Q9M2U1	5.6e-36	50.00	Dof zinc finger protein DOF3.6 OS=Arabidopsis thaliana OX=3702 GN=DOF3.6 PE=1 SV...	[more]
Q9ZV33	4.0e-34	55.94	Dof zinc finger protein DOF2.2 OS=Arabidopsis thaliana OX=3702 GN=DOF2.2 PE=2 SV...	[more]
Q8L9V6	4.4e-33	48.50	Dof zinc finger protein DOF1.1 OS=Arabidopsis thaliana OX=3702 GN=DOF1.1 PE=1 SV...	[more]

BLAST of Cp4.1LG20g08500 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6583435.1	1.62e-165	97.35	Dof zinc finger protein, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022964970.1	2.30e-165	96.90	dof zinc finger protein DOF3.6-like [Cucurbita moschata]	[more]
KAG7019198.1	1.33e-164	96.90	Dof zinc finger protein DOF5.1 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022970568.1	1.49e-161	95.58	dof zinc finger protein DOF3.6-like [Cucurbita maxima]	[more]
KAG6607235.1	2.05e-100	60.07	Dof zinc finger protein, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of Cp4.1LG20g08500 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HMD4	1.11e-165	96.90	dof zinc finger protein DOF3.6-like OS=Cucurbita moschata OX=3662 GN=LOC11146491...	[more]
A0A6J1I4A1	7.22e-162	95.58	dof zinc finger protein DOF3.6-like OS=Cucurbita maxima OX=3661 GN=LOC111469505 ...	[more]
A0A6J1K6H5	7.82e-100	59.34	dof zinc finger protein DOF3.6-like OS=Cucurbita maxima OX=3661 GN=LOC111492744 ...	[more]
A0A6J1G9K4	7.82e-100	59.93	dof zinc finger protein DOF3.6-like OS=Cucurbita moschata OX=3662 GN=LOC11145218...	[more]
A0A5D3DEG4	3.85e-97	59.64	Dof zinc finger protein DOF3.6 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]

BLAST of Cp4.1LG20g08500 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G37590.1	1.5e-39	73.79	DNA binding with one finger 2.4	[more]
AT5G02460.1	1.5e-39	84.88	Dof-type zinc finger DNA-binding family protein	[more]
AT3G55370.1	4.0e-37	50.00	OBF-binding protein 3	[more]
AT3G55370.2	4.0e-37	50.00	OBF-binding protein 3	[more]
AT3G55370.3	4.0e-37	50.00	OBF-binding protein 3	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003851	Zinc finger, Dof-type	PFAM	PF02701	zf-Dof	coord: 51..106 e-value: 2.7E-33 score: 113.9
IPR003851	Zinc finger, Dof-type	PROSITE	PS01361	ZF_DOF_1	coord: 54..90
IPR003851	Zinc finger, Dof-type	PROSITE	PS50884	ZF_DOF_2	coord: 52..106 score: 29.701937
None	No IPR available	PANTHER	PTHR31992	DOF ZINC FINGER PROTEIN DOF1.4-RELATED	coord: 21..185
None	No IPR available	PANTHER	PTHR31992:SF129	DOF DOMAIN ZINC FINGER PROTEIN	coord: 21..185

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG20g08500.1	Cp4.1LG20g08500.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding