Cp4.1LG20g08270 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG20g08270
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Copper transporter
Location	Cp4.1LG20: 7591456 .. 7593200 (-)
RNA-Seq Expression	Cp4.1LG20g08270
Synteny	Cp4.1LG20g08270

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ACTGCGTTCTTATCAGTTATCAGAAACGAAGCGACCTCCCAAATACCTCACACAAATTTCCCGGCACCGGAGCCGCCATGGACGCCGCCAACAACGCACACCACCACCATGTGTACAGAATGACGCCGCCGATTGATTCCTCCACCGCATCGCCGGAGATGACGCACGGCACGATGATGCTGCACATGACCTTCTTTTGGGGAGCCAACGCCGAGATTCTGTTCAATCGCTGGCCTGGCGAACGCGGCGGCATGTACGCCTTGGCCTTGATCTTCGTTTTCGTGCTTGCTTTCATCGTCGAGTGGCTTTCGCATAGCCGATTGATTAAGGAAGATTCGAGCGCCGCGGCGGCAGGATTGATCCGGACTCTTTTGCATACGGTTAGGGTTGGATTGGTGAATTTAGTGATGCTAGCCGTCATGTCGTTCAATGTTGGAGTGTTTTTGGTCGCCATCGGTGGCCATTGCCTCGGATTCTTGCTGTTTGGGAGTAGATTGTTCAAGAAATCGGCCGTGGCTTCTGGTAAATCCTCTGTTCTTCCTTCTCTTAGTTGTTGAAATTGTTGGATGATGGAAGTCCCACATCGACTAATTTAGGGAATGATCATAAGCAAAGCCATGAGAGCTTATGCTCAAAGTGGACAATAGAAATCACGATGAAGGAATATCAAAATTTTCAATCGAATTGGTTTAGGTTTCGATTCAATTGGTAATGTTAAAATAGGAGAAATTATATTTATTAGGCACAAAATTATATAATTTTAAAATTTATCGGAATTTAATAAAATAATTTAAAATAAAGAGATAATTAAGAATTTTTAAAATTGTTTTACATACTATCTAGTTTCCATTTTTATATTTTAAAATTTAAATTGTCAATTTTAGTCATATAAATATTGAATATATATTATATATATGCATAGGAAATAAAATAGAATTTCATTATAAAAGGAAACTTATACAAATTTATGTTAGAAAAGTACATTTTTAAATTTAGAAATAATAATTGGTTTTGCAATTTAGATTAATGTGTTGAAAAATATGAAGAGGGAAAAAAAGAAAATATGTGGAGGACGTTTTTTTTTTTTTTTTTNATATATATGCATAGGAAATAAAATAGAATTTCATTATAAAAGGAAACTTATACAAATTTATGTTAGAAAAGTACATTTTTAAATTTAGAAATAATAATTGGTTTTGCAATTTAGATTAATGTGTTGAAAAATATGAAGAGGGAAAAAAAGAAAATATGTGGAGGACTTTTTTTTTTTTTTTTTTTGGTTTAAAATCCCGGAAATAATTTAGAAATTTTGAATGTAGGGTCAGCCTCAAGAACAGAGCAGCCAGTTACATCGTGACACGTGGATAAGGATTCAAGAAACCTAAGGCGGCGGAGACGAGACACGTTGCTAACTAATATCCTAAACCTTCGAAGTCTAAAAAAAATATCATTAAAAAATATCTGCGCACTTTTCTAACATTTTAAAAAATTAAATGCTAGATTTAAAAAATATATGAAATTTTAAAAATAGGATTAAAATGTTTTAGTTTAATTTTTTTTTTTTACAATTAATATATAAACTAAAATTGTTTATACTTTTTAATGTTACTTTTCAAAGTGAGTATTTTTTAAAGTTATATAAATAGTATGTGTATATATGTACGATAATCCAAAGGAGTGTATGAGAATATAAATTGGGTAACAACATTATGAGAATAATTATTTTCATTTTTACGACAACGGAA

mRNA sequence

ACTGCGTTCTTATCAGTTATCAGAAACGAAGCGACCTCCCAAATACCTCACACAAATTTCCCGGCACCGGAGCCGCCATGGACGCCGCCAACAACGCACACCACCACCATGTGTACAGAATGACGCCGCCGATTGATTCCTCCACCGCATCGCCGGAGATGACGCACGGCACGATGATGCTGCACATGACCTTCTTTTGGGGAGCCAACGCCGAGATTCTGTTCAATCGCTGGCCTGGCGAACGCGGCGGCATGTACGCCTTGGCCTTGATCTTCGTTTTCGTGCTTGCTTTCATCGTCGAGTGGCTTTCGCATAGCCGATTGATTAAGGAAGATTCGAGCGCCGCGGCGGCAGGATTGATCCGGACTCTTTTGCATACGGTTAGGGTTGGATTGGTGAATTTAGTGATGCTAGCCGTCATGTCGTTCAATGTTGGAGTGTTTTTGGTCGCCATCGGTGGCCATTGCCTCGGATTCTTGCTGTTTGGGAGGTCAGCCTCAAGAACAGAGCAGCCAGTTACATCGTGACACGTGGATAAGGATTCAAGAAACCTAAGGCGGCGGAGACGAGACACGTTGCTAACTAATATCCTAAACCTTCGAAGTCTAAAAAAAATATCATTAAAAAATATCTGCGCACTTTTCTAACATTTTAAAAAATTAAATGCTAGATTTAAAAAATATATGAAATTTTAAAAATAGGATTAAAATGTTTTAGTTTAATTTTTTTTTTTTACAATTAATATATAAACTAAAATTGTTTATACTTTTTAATGTTACTTTTCAAAGTGAGTATTTTTTAAAGTTATATAAATAGTATGTGTATATATGTACGATAATCCAAAGGAGTGTATGAGAATATAAATTGGGTAACAACATTATGAGAATAATTATTTTCATTTTTACGACAACGGAA

Coding sequence (CDS)

ATGGACGCCGCCAACAACGCACACCACCACCATGTGTACAGAATGACGCCGCCGATTGATTCCTCCACCGCATCGCCGGAGATGACGCACGGCACGATGATGCTGCACATGACCTTCTTTTGGGGAGCCAACGCCGAGATTCTGTTCAATCGCTGGCCTGGCGAACGCGGCGGCATGTACGCCTTGGCCTTGATCTTCGTTTTCGTGCTTGCTTTCATCGTCGAGTGGCTTTCGCATAGCCGATTGATTAAGGAAGATTCGAGCGCCGCGGCGGCAGGATTGATCCGGACTCTTTTGCATACGGTTAGGGTTGGATTGGTGAATTTAGTGATGCTAGCCGTCATGTCGTTCAATGTTGGAGTGTTTTTGGTCGCCATCGGTGGCCATTGCCTCGGATTCTTGCTGTTTGGGAGGTCAGCCTCAAGAACAGAGCAGCCAGTTACATCGTGA

Protein sequence

MDAANNAHHHHVYRMTPPIDSSTASPEMTHGTMMLHMTFFWGANAEILFNRWPGERGGMYALALIFVFVLAFIVEWLSHSRLIKEDSSAAAAGLIRTLLHTVRVGLVNLVMLAVMSFNVGVFLVAIGGHCLGFLLFGRSASRTEQPVTS

Homology

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BLAST of Cp4.1LG20g08270 vs. ExPASy Swiss-Prot
Match: Q39065 (Copper transporter 1 OS=Arabidopsis thaliana OX=3702 GN=COPT1 PE=2 SV=2)

HSP 1 Score: 149.4 bits (376), Expect = 3.1e-35
Identity = 79/150 (52.67%), Postives = 99/150 (66.00%), Query Frame = 0


Query: 9   HHHVYRMTPPIDSSTASPEMT-------------HGTMMLHMTFFWGANAEILFNRWPGE 68
           H H++ M  P  SS++SP                H  MM+HMTFFWG N E+LF+ WPG 
Sbjct: 3   HDHMHGMPRPSSSSSSSPSSMMNNGSMNEGGGHHHMKMMMHMTFFWGKNTEVLFSGWPGT 62

Query: 69  RGGMYALALIFVFVLAFIVEWLSHSRLIK---EDSSAAAAGLIRTLLHTVRVGLVNLVML 128
             GMYAL LIFVF LA + EWL+HS L++    DS+  AAGLI+T ++T+R+GL  LVML
Sbjct: 63  SSGMYALCLIFVFFLAVLTEWLAHSSLLRGSTGDSANRAAGLIQTAVYTLRIGLAYLVML 122

Query: 129 AVMSFNVGVFLVAIGGHCLGFLLFGRSASR 143
           AVMSFN GVFLVA+ GH +GF+LFG    R
Sbjct: 123 AVMSFNAGVFLVALAGHAVGFMLFGSQTFR 152

[Close]

BLAST of Cp4.1LG20g08270 vs. ExPASy Swiss-Prot
Match: Q9STG2 (Copper transporter 2 OS=Arabidopsis thaliana OX=3702 GN=COPT2 PE=2 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 9.4e-32
Identity = 72/131 (54.96%), Postives = 94/131 (71.76%), Query Frame = 0


Query: 9   HHHVYRMTPPIDSSTA-SPEMTHGTMMLHMTFFWGANAEILFNRWPGERGGMYALALIFV 68
           H H++ M PP  SS++ S   T   MM+HMTFFWG N E+LF+ WPG   GMYAL LI +
Sbjct: 3   HDHMHDMPPPSPSSSSMSNHTTPHMMMMHMTFFWGKNTEVLFSGWPGTSSGMYALCLIVI 62

Query: 69  FVLAFIVEWLSHSRLIK-EDSSAAAAGLIRTLLHTVRVGLVNLVMLAVMSFNVGVFLVAI 128
           F+LA I EWL+HS +++   S+  AAGL +T ++T++ GL  LVMLAVMSFN GVF+VAI
Sbjct: 63  FLLAVIAEWLAHSPILRVSGSTNRAAGLAQTAVYTLKTGLSYLVMLAVMSFNAGVFIVAI 122

Query: 129 GGHCLGFLLFG 138
            G+ +GF LFG
Sbjct: 123 AGYGVGFFLFG 133

[Close]

BLAST of Cp4.1LG20g08270 vs. ExPASy Swiss-Prot
Match: Q8GWP3 (Copper transporter 6 OS=Arabidopsis thaliana OX=3702 GN=COPT6 PE=2 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 6.8e-30
Identity = 67/125 (53.60%), Postives = 88/125 (70.40%), Query Frame = 0


Query: 17  PPIDSSTASPEMTHGTMMLHMTFFWGANAEILFNRWPGERGGMYALALIFVFVLAFIVEW 76
           PP   S+         +M+HMTFFWG N EILF+ WPG   GMY L LI VF+LA IVEW
Sbjct: 7   PPSSPSSMVNHTNSNMIMMHMTFFWGKNTEILFSGWPGTSLGMYVLCLIVVFLLAVIVEW 66

Query: 77  LSHSRLIK-EDSSAAAAGLIRTLLHTVRVGLVNLVMLAVMSFNVGVFLVAIGGHCLGFLL 136
           L+HS +++   S++ A GL++T ++T++ GL  LVMLAVMSFN GVF+VAI G  +GF+L
Sbjct: 67  LAHSSILRGRGSTSRAKGLVQTAVYTLKTGLAYLVMLAVMSFNGGVFIVAIAGFAVGFML 126

Query: 137 FGRSA 141
           FG +A
Sbjct: 127 FGSTA 131

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BLAST of Cp4.1LG20g08270 vs. ExPASy Swiss-Prot
Match: Q94EE4 (Copper transporter 1 OS=Oryza sativa subsp. japonica OX=39947 GN=COPT1 PE=2 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 1.4e-27
Identity = 72/134 (53.73%), Postives = 84/134 (62.69%), Query Frame = 0


Query: 10  HHVYRMTPPIDSSTASPEMTHGTMM--LHMTFFWGANAEILFNRWPGERGGMYALALIFV 69
           H +  M+PP   + A   M     M   HMTFFWG N+E+LF  WPG RGGMYALALIFV
Sbjct: 6   HDMGGMSPPAAGAAAQGGMGAMKSMRYTHMTFFWGKNSEVLFTMWPGTRGGMYALALIFV 65

Query: 70  FVLAFIVEWLSHSR-----LIKEDSSAAAAGLIRTLLHTVRVGLVNLVMLAVMSFNVGVF 129
           F LA IVE+L   R           + AA GL R  +HTVRVG+  L+MLA+MSFN GVF
Sbjct: 66  FALAVIVEFLGSRRADACLAALARRAPAAGGLARAAVHTVRVGVAYLLMLALMSFNGGVF 125

Query: 130 LVAIGGHCLGFLLF 137
           LVA+ GH  GFL F
Sbjct: 126 LVAVAGHAAGFLAF 139

[Close]

BLAST of Cp4.1LG20g08270 vs. ExPASy Swiss-Prot
Match: Q8SAA5 (Copper transporter 4 OS=Arabidopsis thaliana OX=3702 GN=COPT4 PE=2 SV=2)

HSP 1 Score: 114.4 bits (285), Expect = 1.1e-24
Identity = 62/125 (49.60%), Postives = 80/125 (64.00%), Query Frame = 0


Query: 21  SSTASPEMTHGTMMLHMTFFWGANAEILFNRWPGERGGMYALALIFVFVLAFIVEWL--- 80
           ++T   +  H   +LH TF+WG N ++LF+ WPG   GMYALALIFVF LAF+ EWL   
Sbjct: 16  TTTTQTQTPHRPSLLHPTFYWGYNCQVLFSGWPGSDRGMYALALIFVFFLAFLAEWLARC 75

Query: 81  SHSRLIKEDSSAAAAGLIRTLLHTVRVGLVNLVMLAVMSFNVGVFLVAIGGHCLGFLLFG 140
           S +  IK+ +   A    RT ++TV+ G   LV+LAV+SFN GVFL AI GH LGF +F 
Sbjct: 76  SDASSIKQGADKLAKVAFRTAMYTVKSGFSYLVILAVVSFNGGVFLAAIFGHALGFAVFR 135

Query: 141 RSASR 143
             A R
Sbjct: 136 GRAFR 140

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BLAST of Cp4.1LG20g08270 vs. NCBI nr
Match: XP_023519281.1 (copper transporter 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 288 bits (737), Expect = 9.33e-98
Identity = 148/160 (92.50%), Postives = 148/160 (92.50%), Query Frame = 0


Query: 1   MDAANNAHHHHVYRMTPPIDSSTASPEMTHGTMMLHMTFFWGANAEILFNRWPGERGGMY 60
           MDAANNAHHHHVYRMTPPIDSSTASPEMTHGTMMLHMTFFWGANAEILFNRWPGERGGMY
Sbjct: 1   MDAANNAHHHHVYRMTPPIDSSTASPEMTHGTMMLHMTFFWGANAEILFNRWPGERGGMY 60

Query: 61  ALALIFVFVLAFIVEWLSHSRLIKEDSSAAAAGLIRTLLHTVRVGLVNLVMLAVMSFNVG 120
           ALALIFVFVLAFIVEWLSHSRLIKEDSSAAAAGLIRTLLHTVRVGLVNLVMLAVMSFNVG
Sbjct: 61  ALALIFVFVLAFIVEWLSHSRLIKEDSSAAAAGLIRTLLHTVRVGLVNLVMLAVMSFNVG 120

Query: 121 VFLVAIGGHCLGFLLFGR-----------SASRTEQPVTS 149
           VFLVAIGGHCLGFLLFG            SASRTEQPVTS
Sbjct: 121 VFLVAIGGHCLGFLLFGSRLFKKSAVASGSASRTEQPVTS 160

[Close]

BLAST of Cp4.1LG20g08270 vs. NCBI nr
Match: XP_023521056.1 (copper transporter 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 275 bits (702), Expect = 2.03e-92
Identity = 141/160 (88.12%), Postives = 145/160 (90.62%), Query Frame = 0


Query: 1   MDAANNAHHHHVYRMTPPIDSSTASPEMTHGTMMLHMTFFWGANAEILFNRWPGERGGMY 60
           MDAA+NAHHHH++ M PP+DSSTA PEMTHGTMMLHMTFFWGANAEILFNRWPGERGGMY
Sbjct: 1   MDAADNAHHHHMHGMAPPMDSSTAWPEMTHGTMMLHMTFFWGANAEILFNRWPGERGGMY 60

Query: 61  ALALIFVFVLAFIVEWLSHSRLIKEDSSAAAAGLIRTLLHTVRVGLVNLVMLAVMSFNVG 120
           ALALIFVFVLAFIVEWLSHSRLIKEDSSAAAAGLIRTLLHTVRVGLVNLVMLAVMSFNVG
Sbjct: 61  ALALIFVFVLAFIVEWLSHSRLIKEDSSAAAAGLIRTLLHTVRVGLVNLVMLAVMSFNVG 120

Query: 121 VFLVAIGGHCLGFLLFGR-----------SASRTEQPVTS 149
           VFLVAIGGHCLGFLLFG            SASRTEQPVTS
Sbjct: 121 VFLVAIGGHCLGFLLFGSRLFKKSAVASGSASRTEQPVTS 160

[Close]

BLAST of Cp4.1LG20g08270 vs. NCBI nr
Match: XP_022964896.1 (copper transporter 6-like [Cucurbita moschata])

HSP 1 Score: 248 bits (634), Expect = 6.36e-82
Identity = 130/158 (82.28%), Postives = 135/158 (85.44%), Query Frame = 0


Query: 1   MDAANNAHHHHVYRMTPPIDSSTASPEMTHGTMMLHMTFFWGANAEILFNRWPGERGGMY 60
           MDAA+NA+HHH++ M PP DSSTASPEMTHGTMMLHMTFFWG NAEILFNRWPGERGGMY
Sbjct: 1   MDAADNAYHHHMHGMAPPKDSSTASPEMTHGTMMLHMTFFWGDNAEILFNRWPGERGGMY 60

Query: 61  ALALIFVFVLAFIVEWLSHSRLIKEDSSAAAAGLIRTLLHTVRVGLVNLVMLAVMSFNVG 120
           ALALIFVFVLA IVEWLSHSRLIKEDSSAAAA LIRTLLH VRVGLV LVMLAVMSFNVG
Sbjct: 61  ALALIFVFVLALIVEWLSHSRLIKEDSSAAAARLIRTLLHRVRVGLVYLVMLAVMSFNVG 120

Query: 121 VFLVAIGGHCLGFLLFG-----------RSASRTEQPV 147
           VFLVAIGGHCLGFLLFG            SASRT   +
Sbjct: 121 VFLVAIGGHCLGFLLFGSRLFKKSAVASESASRTGSQL 158

[Close]

BLAST of Cp4.1LG20g08270 vs. NCBI nr
Match: KAG6583399.1 (Copper transporter 6, partial [Cucurbita argyrosperma subsp. sororia] >KAG7019163.1 Copper transporter 6, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 247 bits (630), Expect = 1.85e-81
Identity = 125/137 (91.24%), Postives = 129/137 (94.16%), Query Frame = 0


Query: 1   MDAANNAHHHHVYRMTPPIDSSTASPEMTHGTMMLHMTFFWGANAEILFNRWPGERGGMY 60
           MDAA+NA+HHH++ M PP DSSTASPEMTHGTMMLHMTFFWG NAEILFNRWPGERGGMY
Sbjct: 1   MDAADNAYHHHMHGMAPPKDSSTASPEMTHGTMMLHMTFFWGDNAEILFNRWPGERGGMY 60

Query: 61  ALALIFVFVLAFIVEWLSHSRLIKEDSSAAAAGLIRTLLHTVRVGLVNLVMLAVMSFNVG 120
           ALALIFVFVLA IVEWLSHSRLIKEDSSAAAA LIRTLLH VRVGLV LVMLAVMSFNVG
Sbjct: 61  ALALIFVFVLALIVEWLSHSRLIKEDSSAAAARLIRTLLHRVRVGLVYLVMLAVMSFNVG 120

Query: 121 VFLVAIGGHCLGFLLFG 137
           VFLVAIGGHCLGFLLFG
Sbjct: 121 VFLVAIGGHCLGFLLFG 137

[Close]

BLAST of Cp4.1LG20g08270 vs. NCBI nr
Match: XP_004145275.1 (copper transporter 1 [Cucumis sativus] >XP_031741185.1 copper transporter 1-like [Cucumis sativus])

HSP 1 Score: 233 bits (593), Expect = 6.56e-76
Identity = 114/149 (76.51%), Postives = 127/149 (85.23%), Query Frame = 0


Query: 1   MDAANNAHHHHVYRMTPPIDSSTASPEMTHGTMMLHMTFFWGANAEILFNRWPGERGGMY 60
           MDAA  AH+HH++ MTPP DSSTASPEM H  MM+HMTFFWG NAEILF+RWPGER GMY
Sbjct: 1   MDAATEAHNHHMHGMTPPPDSSTASPEMMHHKMMMHMTFFWGTNAEILFHRWPGERSGMY 60

Query: 61  ALALIFVFVLAFIVEWLSHSRLIKEDSSAAAAGLIRTLLHTVRVGLVNLVMLAVMSFNVG 120
           ALALIF+FVLAF+VEWL+H RLIKEDSS AAAGLIRTL+HTVRVGL  LVMLAVMSFNVG
Sbjct: 61  ALALIFIFVLAFLVEWLTHCRLIKEDSSRAAAGLIRTLMHTVRVGLAYLVMLAVMSFNVG 120

Query: 121 VFLVAIGGHCLGFLLFGRSASRTEQPVTS 149
           V LVAIGGHCLGF LFG    +  + V++
Sbjct: 121 VLLVAIGGHCLGFFLFGSKFFKRSEAVSA 149

[Close]

BLAST of Cp4.1LG20g08270 vs. ExPASy TrEMBL
Match: A0A6J1HK81 (Copper transporter OS=Cucurbita moschata OX=3662 GN=LOC111464864 PE=3 SV=1)

HSP 1 Score: 248 bits (634), Expect = 3.08e-82
Identity = 130/158 (82.28%), Postives = 135/158 (85.44%), Query Frame = 0


Query: 1   MDAANNAHHHHVYRMTPPIDSSTASPEMTHGTMMLHMTFFWGANAEILFNRWPGERGGMY 60
           MDAA+NA+HHH++ M PP DSSTASPEMTHGTMMLHMTFFWG NAEILFNRWPGERGGMY
Sbjct: 1   MDAADNAYHHHMHGMAPPKDSSTASPEMTHGTMMLHMTFFWGDNAEILFNRWPGERGGMY 60

Query: 61  ALALIFVFVLAFIVEWLSHSRLIKEDSSAAAAGLIRTLLHTVRVGLVNLVMLAVMSFNVG 120
           ALALIFVFVLA IVEWLSHSRLIKEDSSAAAA LIRTLLH VRVGLV LVMLAVMSFNVG
Sbjct: 61  ALALIFVFVLALIVEWLSHSRLIKEDSSAAAARLIRTLLHRVRVGLVYLVMLAVMSFNVG 120

Query: 121 VFLVAIGGHCLGFLLFG-----------RSASRTEQPV 147
           VFLVAIGGHCLGFLLFG            SASRT   +
Sbjct: 121 VFLVAIGGHCLGFLLFGSRLFKKSAVASESASRTGSQL 158

[Close]

BLAST of Cp4.1LG20g08270 vs. ExPASy TrEMBL
Match: A0A0A0LVF3 (Copper transporter OS=Cucumis sativus OX=3659 GN=Csa_1G526830 PE=3 SV=1)

HSP 1 Score: 233 bits (593), Expect = 3.18e-76
Identity = 114/149 (76.51%), Postives = 127/149 (85.23%), Query Frame = 0


Query: 1   MDAANNAHHHHVYRMTPPIDSSTASPEMTHGTMMLHMTFFWGANAEILFNRWPGERGGMY 60
           MDAA  AH+HH++ MTPP DSSTASPEM H  MM+HMTFFWG NAEILF+RWPGER GMY
Sbjct: 1   MDAATEAHNHHMHGMTPPPDSSTASPEMMHHKMMMHMTFFWGTNAEILFHRWPGERSGMY 60

Query: 61  ALALIFVFVLAFIVEWLSHSRLIKEDSSAAAAGLIRTLLHTVRVGLVNLVMLAVMSFNVG 120
           ALALIF+FVLAF+VEWL+H RLIKEDSS AAAGLIRTL+HTVRVGL  LVMLAVMSFNVG
Sbjct: 61  ALALIFIFVLAFLVEWLTHCRLIKEDSSRAAAGLIRTLMHTVRVGLAYLVMLAVMSFNVG 120

Query: 121 VFLVAIGGHCLGFLLFGRSASRTEQPVTS 149
           V LVAIGGHCLGF LFG    +  + V++
Sbjct: 121 VLLVAIGGHCLGFFLFGSKFFKRSEAVSA 149

[Close]

BLAST of Cp4.1LG20g08270 vs. ExPASy TrEMBL
Match: A0A1S3C5M2 (Copper transporter OS=Cucumis melo OX=3656 GN=LOC103497118 PE=3 SV=1)

HSP 1 Score: 229 bits (584), Expect = 7.47e-75
Identity = 113/149 (75.84%), Postives = 126/149 (84.56%), Query Frame = 0


Query: 1   MDAANNAHHHHVYRMTPPIDSSTASPEMTHGTMMLHMTFFWGANAEILFNRWPGERGGMY 60
           MDAA  AH+HH++ MTPP DSSTASPEM H  MM+HMTFFWG NAEILF+RWPGER GMY
Sbjct: 1   MDAAAEAHNHHMHGMTPPPDSSTASPEMMHHKMMMHMTFFWGTNAEILFHRWPGERSGMY 60

Query: 61  ALALIFVFVLAFIVEWLSHSRLIKEDSSAAAAGLIRTLLHTVRVGLVNLVMLAVMSFNVG 120
           ALALI +FVLAF+VEWL+H RLIKEDSS AAAGLIRTL+HTVRVGL  LVMLAVMSFNVG
Sbjct: 61  ALALILIFVLAFLVEWLTHCRLIKEDSSQAAAGLIRTLMHTVRVGLAYLVMLAVMSFNVG 120

Query: 121 VFLVAIGGHCLGFLLFGRSASRTEQPVTS 149
           V LVAIGGHCLGF LFG    +  + V++
Sbjct: 121 VLLVAIGGHCLGFFLFGSRFFKRSEAVSA 149

[Close]

BLAST of Cp4.1LG20g08270 vs. ExPASy TrEMBL
Match: A0A5A7SLZ1 (Copper transporter OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold194G001730 PE=3 SV=1)

HSP 1 Score: 229 bits (583), Expect = 1.30e-74
Identity = 113/148 (76.35%), Postives = 125/148 (84.46%), Query Frame = 0


Query: 1   MDAANNAHHHHVYRMTPPIDSSTASPEMTHGTMMLHMTFFWGANAEILFNRWPGERGGMY 60
           MDAA  AH+HH++ MTPP DSSTASPEM H  MM+HMTFFWG NAEILF+RWPGER GMY
Sbjct: 1   MDAAAEAHNHHMHGMTPPPDSSTASPEMMHHKMMMHMTFFWGTNAEILFHRWPGERSGMY 60

Query: 61  ALALIFVFVLAFIVEWLSHSRLIKEDSSAAAAGLIRTLLHTVRVGLVNLVMLAVMSFNVG 120
           ALALI +FVLAF+VEWL+H RLIKEDSS AAAGLIRTL+HTVRVGL  LVMLAVMSFNVG
Sbjct: 61  ALALILIFVLAFLVEWLTHCRLIKEDSSQAAAGLIRTLMHTVRVGLAYLVMLAVMSFNVG 120

Query: 121 VFLVAIGGHCLGFLLFGRSASRTEQPVT 148
           V LVAIGGHCLGF LFG    +  + V+
Sbjct: 121 VLLVAIGGHCLGFFLFGSRFFKRSEAVS 148

[Close]

BLAST of Cp4.1LG20g08270 vs. ExPASy TrEMBL
Match: A0A6J1KFM2 (Copper transporter OS=Cucurbita maxima OX=3661 GN=LOC111493432 PE=3 SV=1)

HSP 1 Score: 214 bits (546), Expect = 4.59e-69
Identity = 107/149 (71.81%), Postives = 118/149 (79.19%), Query Frame = 0


Query: 1   MDAANNAHHHHVYRMTPPIDSSTASPEMTHGTMMLHMTFFWGANAEILFNRWPGERGGMY 60
           M+A +  HHHH++ M PP  SS ASP MT    M+HMTFFWG NAEILF  WPG+R GMY
Sbjct: 1   MNATDETHHHHMHGMAPPPASSAASPGMTMHHRMMHMTFFWGTNAEILFRNWPGDRSGMY 60

Query: 61  ALALIFVFVLAFIVEWLSHSRLIKEDSSAAAAGLIRTLLHTVRVGLVNLVMLAVMSFNVG 120
           ALALI +FVLAFIVEWLSHSRLIKEDSSAAAAGLIRTL+HTVRVGL  LVMLAVMSFNVG
Sbjct: 61  ALALILIFVLAFIVEWLSHSRLIKEDSSAAAAGLIRTLMHTVRVGLAYLVMLAVMSFNVG 120

Query: 121 VFLVAIGGHCLGFLLFGRSASRTEQPVTS 149
           VFLVAIGGHCLGF  FG    +     ++
Sbjct: 121 VFLVAIGGHCLGFFFFGSRFFKNSGAASA 149

[Close]

BLAST of Cp4.1LG20g08270 vs. TAIR 10
Match: AT5G59030.1 (copper transporter 1 )

HSP 1 Score: 149.4 bits (376), Expect = 2.2e-36
Identity = 79/150 (52.67%), Postives = 99/150 (66.00%), Query Frame = 0


Query: 9   HHHVYRMTPPIDSSTASPEMT-------------HGTMMLHMTFFWGANAEILFNRWPGE 68
           H H++ M  P  SS++SP                H  MM+HMTFFWG N E+LF+ WPG 
Sbjct: 3   HDHMHGMPRPSSSSSSSPSSMMNNGSMNEGGGHHHMKMMMHMTFFWGKNTEVLFSGWPGT 62

Query: 69  RGGMYALALIFVFVLAFIVEWLSHSRLIK---EDSSAAAAGLIRTLLHTVRVGLVNLVML 128
             GMYAL LIFVF LA + EWL+HS L++    DS+  AAGLI+T ++T+R+GL  LVML
Sbjct: 63  SSGMYALCLIFVFFLAVLTEWLAHSSLLRGSTGDSANRAAGLIQTAVYTLRIGLAYLVML 122

Query: 129 AVMSFNVGVFLVAIGGHCLGFLLFGRSASR 143
           AVMSFN GVFLVA+ GH +GF+LFG    R
Sbjct: 123 AVMSFNAGVFLVALAGHAVGFMLFGSQTFR 152

[Close]

BLAST of Cp4.1LG20g08270 vs. TAIR 10
Match: AT3G46900.1 (copper transporter 2 )

HSP 1 Score: 137.9 bits (346), Expect = 6.7e-33
Identity = 72/131 (54.96%), Postives = 94/131 (71.76%), Query Frame = 0


Query: 9   HHHVYRMTPPIDSSTA-SPEMTHGTMMLHMTFFWGANAEILFNRWPGERGGMYALALIFV 68
           H H++ M PP  SS++ S   T   MM+HMTFFWG N E+LF+ WPG   GMYAL LI +
Sbjct: 3   HDHMHDMPPPSPSSSSMSNHTTPHMMMMHMTFFWGKNTEVLFSGWPGTSSGMYALCLIVI 62

Query: 69  FVLAFIVEWLSHSRLIK-EDSSAAAAGLIRTLLHTVRVGLVNLVMLAVMSFNVGVFLVAI 128
           F+LA I EWL+HS +++   S+  AAGL +T ++T++ GL  LVMLAVMSFN GVF+VAI
Sbjct: 63  FLLAVIAEWLAHSPILRVSGSTNRAAGLAQTAVYTLKTGLSYLVMLAVMSFNAGVFIVAI 122

Query: 129 GGHCLGFLLFG 138
            G+ +GF LFG
Sbjct: 123 AGYGVGFFLFG 133

[Close]

BLAST of Cp4.1LG20g08270 vs. TAIR 10
Match: AT2G26975.1 (Ctr copper transporter family )

HSP 1 Score: 131.7 bits (330), Expect = 4.8e-31
Identity = 67/125 (53.60%), Postives = 88/125 (70.40%), Query Frame = 0


Query: 17  PPIDSSTASPEMTHGTMMLHMTFFWGANAEILFNRWPGERGGMYALALIFVFVLAFIVEW 76
           PP   S+         +M+HMTFFWG N EILF+ WPG   GMY L LI VF+LA IVEW
Sbjct: 7   PPSSPSSMVNHTNSNMIMMHMTFFWGKNTEILFSGWPGTSLGMYVLCLIVVFLLAVIVEW 66

Query: 77  LSHSRLIK-EDSSAAAAGLIRTLLHTVRVGLVNLVMLAVMSFNVGVFLVAIGGHCLGFLL 136
           L+HS +++   S++ A GL++T ++T++ GL  LVMLAVMSFN GVF+VAI G  +GF+L
Sbjct: 67  LAHSSILRGRGSTSRAKGLVQTAVYTLKTGLAYLVMLAVMSFNGGVFIVAIAGFAVGFML 126

Query: 137 FGRSA 141
           FG +A
Sbjct: 127 FGSTA 131

[Close]

BLAST of Cp4.1LG20g08270 vs. TAIR 10
Match: AT2G37925.1 (copper transporter 4 )

HSP 1 Score: 114.4 bits (285), Expect = 7.9e-26
Identity = 62/125 (49.60%), Postives = 80/125 (64.00%), Query Frame = 0


Query: 21  SSTASPEMTHGTMMLHMTFFWGANAEILFNRWPGERGGMYALALIFVFVLAFIVEWL--- 80
           ++T   +  H   +LH TF+WG N ++LF+ WPG   GMYALALIFVF LAF+ EWL   
Sbjct: 16  TTTTQTQTPHRPSLLHPTFYWGYNCQVLFSGWPGSDRGMYALALIFVFFLAFLAEWLARC 75

Query: 81  SHSRLIKEDSSAAAAGLIRTLLHTVRVGLVNLVMLAVMSFNVGVFLVAIGGHCLGFLLFG 140
           S +  IK+ +   A    RT ++TV+ G   LV+LAV+SFN GVFL AI GH LGF +F 
Sbjct: 76  SDASSIKQGADKLAKVAFRTAMYTVKSGFSYLVILAVVSFNGGVFLAAIFGHALGFAVFR 135

Query: 141 RSASR 143
             A R
Sbjct: 136 GRAFR 140

[Close]

BLAST of Cp4.1LG20g08270 vs. TAIR 10
Match: AT5G59040.1 (copper transporter 3 )

HSP 1 Score: 102.8 bits (255), Expect = 2.4e-22
Identity = 58/125 (46.40%), Postives = 75/125 (60.00%), Query Frame = 0


Query: 18  PIDSSTASPEMTHGTMMLHMTFFWGANAEILFNRWPGERGGMYALALIFVFVLAFIVEWL 77
           P  SS       HG MM HMTFFWG   E+LF+ WPG    MY + L  +FV++   E L
Sbjct: 14  PSPSSFFQHRHRHGGMM-HMTFFWGKTTEVLFDGWPGTSLKMYWVCLAVIFVISAFSECL 73

Query: 78  SHSRLIKEDSSAAAAGLIRTLLHTVRVGLVNLVMLAVMSFNVGVFLVAIGGHCLGFLLFG 137
           S    +K   ++   GL++T ++TVR  L  LVMLAVMSFN GVF+ A+ G  LGF++FG
Sbjct: 74  SRCGFMKSGPASLGGGLLQTAVYTVRAALSYLVMLAVMSFNGGVFVAAMAGFGLGFMIFG 133

Query: 138 RSASR 143
             A R
Sbjct: 134 SRAFR 137

The following BLAST results are available for this feature:

BLAST of Cp4.1LG20g08270 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q39065	3.1e-35	52.67	Copper transporter 1 OS=Arabidopsis thaliana OX=3702 GN=COPT1 PE=2 SV=2	[more]
Q9STG2	9.4e-32	54.96	Copper transporter 2 OS=Arabidopsis thaliana OX=3702 GN=COPT2 PE=2 SV=1	[more]
Q8GWP3	6.8e-30	53.60	Copper transporter 6 OS=Arabidopsis thaliana OX=3702 GN=COPT6 PE=2 SV=1	[more]
Q94EE4	1.4e-27	53.73	Copper transporter 1 OS=Oryza sativa subsp. japonica OX=39947 GN=COPT1 PE=2 SV=1	[more]
Q8SAA5	1.1e-24	49.60	Copper transporter 4 OS=Arabidopsis thaliana OX=3702 GN=COPT4 PE=2 SV=2	[more]

BLAST of Cp4.1LG20g08270 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023519281.1	9.33e-98	92.50	copper transporter 1-like [Cucurbita pepo subsp. pepo]	[more]
XP_023521056.1	2.03e-92	88.13	copper transporter 1-like [Cucurbita pepo subsp. pepo]	[more]
XP_022964896.1	6.36e-82	82.28	copper transporter 6-like [Cucurbita moschata]	[more]
KAG6583399.1	1.85e-81	91.24	Copper transporter 6, partial [Cucurbita argyrosperma subsp. sororia] >KAG701916...	[more]
XP_004145275.1	6.56e-76	76.51	copper transporter 1 [Cucumis sativus] >XP_031741185.1 copper transporter 1-like...	[more]

BLAST of Cp4.1LG20g08270 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HK81	3.08e-82	82.28	Copper transporter OS=Cucurbita moschata OX=3662 GN=LOC111464864 PE=3 SV=1	[more]
A0A0A0LVF3	3.18e-76	76.51	Copper transporter OS=Cucumis sativus OX=3659 GN=Csa_1G526830 PE=3 SV=1	[more]
A0A1S3C5M2	7.47e-75	75.84	Copper transporter OS=Cucumis melo OX=3656 GN=LOC103497118 PE=3 SV=1	[more]
A0A5A7SLZ1	1.30e-74	76.35	Copper transporter OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold194G0...	[more]
A0A6J1KFM2	4.59e-69	71.81	Copper transporter OS=Cucurbita maxima OX=3661 GN=LOC111493432 PE=3 SV=1	[more]

BLAST of Cp4.1LG20g08270 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G59030.1	2.2e-36	52.67	copper transporter 1	[more]
AT3G46900.1	6.7e-33	54.96	copper transporter 2	[more]
AT2G26975.1	4.8e-31	53.60	Ctr copper transporter family	[more]
AT2G37925.1	7.9e-26	49.60	copper transporter 4	[more]
AT5G59040.1	2.4e-22	46.40	copper transporter 3	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007274	Ctr copper transporter	PFAM	PF04145	Ctr	coord: 37..81 e-value: 7.5E-8 score: 33.1 coord: 94..136 e-value: 1.6E-8 score: 35.3
IPR007274	Ctr copper transporter	PANTHER	PTHR12483	SOLUTE CARRIER FAMILY 31 COPPER TRANSPORTERS	coord: 15..141
None	No IPR available	PANTHER	PTHR12483:SF80	COPPER TRANSPORTER 6-LIKE	coord: 15..141

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG20g08270.1	Cp4.1LG20g08270.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030242	autophagy of peroxisome
biological_process	GO:0006878	cellular copper ion homeostasis
biological_process	GO:0035434	copper ion transmembrane transport
biological_process	GO:0045324	late endosome to vacuole transport
biological_process	GO:0016236	macroautophagy
biological_process	GO:0006468	protein phosphorylation
biological_process	GO:0006623	protein targeting to vacuole
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005770	late endosome
cellular_component	GO:0071561	nucleus-vacuole junction
cellular_component	GO:0034271	phosphatidylinositol 3-kinase complex, class III, type I
cellular_component	GO:0034272	phosphatidylinositol 3-kinase complex, class III, type II
cellular_component	GO:0005886	plasma membrane
molecular_function	GO:0005375	copper ion transmembrane transporter activity
molecular_function	GO:0004674	protein serine/threonine kinase activity