Cp4.1LG20g06890 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG20g06890
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Splicing factor YJU2
Location	Cp4.1LG20: 5267317 .. 5271810 (-)
RNA-Seq Expression	Cp4.1LG20g06890
Synteny	Cp4.1LG20g06890

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTAGAGTAAAAGACTTATGTTAAAAAGTTCGTATATAGTATAGGTATTGATAGTGAGGGGCGGTAGAAGAAATGTGGGAAAATAGGCTTTAATCGTGGGAAGATACTTAGATGTGTTGTCTACTGAGAGAGAGAACAAATGCTTGAAGCGAAGAGTAGACAGAATAAGAAAAGATATAGTTGAACTCTATTCTTTTGTTTTTTACTGTTGTGCAATGGTCCATTTTGCGCGATCTTGGATATGGGGAATTTGTCGAAGATCTTAGGTTGTTCGTTTGAAAAATTCTTTTTTTGAATAATTTCCATGCTCAAGTGCATTCCTTTGGTAAAACGGGAGAGAGTTATAAGGTGCTTAACAAATACTACATGGTTGTTGGGATTAAATGGGACAAGTGCATGCATTCCTCTAAAATATGGCATATAAATCTACATGGTTTTTGGGATGTGCTAGATATTGACTGGTACACCATTCTGTTGTTTTCTACTACAGTGAGATAAAATGGGAGAGAGGAAGGTGCTTAACAAATACTACCCACCGGATTTTGATCCATCAAAGCTACCAAGGGTTCGTAGGCCCAAAAACCAGCAAATCAAGGTCCGTATGATGCTTCCGATGAGCATCCGATGCAATACTTGTGGTAATTACATATACAAGGGTACCAAGTTCAATTCTCGCAAGGAGGACGTCGTTGGTGAGGCAAGAGAATGGCTTTGATATTTTTTCCTTTTGACGTAAAACATAACTTCAAATATGTTTGTTCTTATTACAATTAATTTTTTCATGGTTTTTTTGCCTATCTCAGACATATTTGGGAATTCAACTGTTTAGATTCTACTTCAAGTGTACTAGATGTTCTGCTGAACTCACCATCAAGACAGACCCCCAAAACTCAGATTATATTGTAGAGTCGGGAGCCACACGTAATTTTGAACCGTGGCGTGAGGAGGATGAAGTTTCAGAGAAAGAGAAACACAAAAGGAATGCTGAAGAGATGGGGGATGCAATGAAATCTTTGGAGAATAGAACCTTGGATTCTAAACGCGAGATGGACATCCTTGCTGCTTTGGATGAGATGAAGTCTATGAAGGTTTTCTTTTTTTTACATTGTTTTGTCATTGAGATTCTTGGTTTGTGCTTTGTTTCTTGGAGCTGTGGCTTTGATTGAGATTCTTCTATTATTAAGTTCAGTTTATTGTTTTAAACAACTTGTTGGGTGTTTGTTTTGCAGTCCAGACACGCAACTGTGAGTATTGATTCAATGCTTTTGGCTTTGCAACAAACTGCAGCAGAAAAGGTATGTATAGCACTGCCTCCAGGAAATCATTTGGACATGAAATATATGAGACGTAGTATTGAAAACAAAAACCTAGGTTCTCCTTTTTCTTGTAGGGCGTCAATTTCACCATTTTGACTAATTTTAAAATGTTTACTTTGCAGGAAAAGAAGTTAGAAGAAGAGGATGAAGCGTTGATAAAATCAATAGTCTTCAACGTGAGTTTATAGTTTCAAAGTGTTTCTCTTCTTCCATTTATAGTTATTTCTTTTTGTTTATTCCTATGAGGAATTATGAATTTTCACATACATTTGTCAATATTCCGATGCGCAGAACTCAAACAATTATGTTAAAAGAATTTCAGATGATCAGTTTGATGATAGCAGTCCTTCTGAACAACCTTCAACCAACAATGACAAAACATCCAACATTAATGCTAAGGTAATAAAATAGCAAGCAAAGCTCCTTTTATTCCATATAAGTAGATTAATAGTGAACATTAATAGTGTGAGGTTTACATTTATAACTGGATTGACTAATCAGGTCCAGTCTCTGTGAATCTCAACTGTTTAGCTTCTTCTTAACTTCATGACATAAGAAGCTAGCTGTGCAGTTTTTATTATTCTTTGTAAAATTTGGTTGTGCAGTTTTTGAGAGTCTGAGATGTTTGGCTAATCAAGGGTGAATATGGTGATTAGAAAGAATTTGTTGAAAGCAATTTAGTAAGAATGAGAATAGACTTTAAAGTCTTGAGATCTTATGGCAAGGAAGAAGAGCTTTTTAGAAGAAATCTTGAATGTTCAGAACCTCAAAGGTTCAATTCACCAAATTACCCCCACAAAATACTACAGATACCTCATACAAGCTTCTGACTGATAAGCACAGTTCACCTTCGACCTTTTTCCATTGGGCATCTTGTGGTCGGTTCGAGTGTTCATGGCAAGCTCCAACAAAGTTTATCTTCCACCACACTTCAAAATTTCTTCTATTTGTATTATTTTTATGCACAAAGATGCTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCTAATTAACCCTATTTGTAGCATTCAAATTTGTATAAACGTTTCTCATTATCATTTCTATCTAATTGATTGCAGAAGCAAAAGCTCTCTGAAGAATCTCCACATGATGATCCTACTACAACGACAAAAGATGTTATTCTTCATAGCACGGGTGAAGGTAGCTCCACTTTTCATTTTTAGTCCATCTATTTTAATAAAGAATGAATCTTGGGTGAATGAAATGGATGATATGACTACGATACTAAACCTTTAATTGATTTGCTCCCTTCTTTCCATATATCAAGCAAGCATATGATACGACTATGATACTAAACCTTTAATTAACTTCCTTTTCTTTCCATATATCAAGATAGCGAATGATTTGCAACTATTGAACTTTTTGCCACACCTTTTTTAAGATACTTTGGCATGTGGATTTTACTGCATATTATCTTTTTTTTAGAAATATATATAAAACAATGTTTAAGAGCATAAAAAAAAAAGAGGCTAAACACTTACAGCAGAAAAGGCTAGATAATAGACGACCATAAGGGCACGTTAAATCTAGCTACCTCCCAATACTTTCTCTATAATTTCTTGACTCTCAAGAAAGATACCTACTTTTATAGGTTTATATGTTGTTGCATTCTTTGTCAGATGAGGAGAAAGACCTTGTCTATAGAGTTGTGACTTAGCTATGACTGTTTGGAATTTTTTTTTTTTTTTTTTTTTTCTTTAAGGTGCTTGGATGTCGTTTGCTAGTCACAAAGGTCTGTGGGAAATGATTGAGGTGTTTCCCATCTATCGTTGTGGCAGGAGGTTTTTGTGGCAGGAGGTTTTTGTGGCCAGCTAGGATTAGAGGGGTGAGAGGAACAATAGAGGAGAGGACCTTTAGAGGGCTTGAGAAACCCTAGTGACATGTAACCTTGTTAGATTCCCTGATTTTCTATGGGTGTTGGTGTAAGAGGCGGAGCGTCCTCTGTGAACTTTCCTTTTTGGGCTTCCCTTCAAGGTTTTTAAAACGTGTATGTTAGGAAGAGGTTTCCACACTCTTATAAAGAATGCTTTGTTCTCCTCTCCAACCGATGTGGGATCTCACAGGTGAACACGCTATTATTTGTAATTATTTCCAAGATCTTGGAGCCTCTTTCTTTATTGGAGTTCCTTTTCATCAACTTTGTTTTTTTGCATGCCTGTGTATTCTCTCACTTTTTCTCAATGAAAGTTGGGTTGTTTCTAAAAAATGGAGAAAGAAAAAGGTTAGAAGGGTTTCGTTGCCTACGGCCCTTAGAAGCAAATCTACCTTTAGTCTCCATATTTCTTAATCAATTGATAGCTGGTTACTGCTGCTCGGCAATTATGAAAATAAGTTGGAGGCTTGTAGCTTCTTTTAGATACTTAGTGTTGGTAAGTTTATTGACAAATTGAGTGCTCAAATTTTGATGCATTTGCTCTTTTTTGTTGCTTGACAGGAGGCGATGGCAATGGCGCCACATCCAGTGATGCTAAGTTGATTTCTAAATCCTTGTCAATTAAGGTTTCCATTGTTAAGAAACCAGAATTGAGTCCTCGGGTGGAGACCAAACAGAAGTTGGAGGTTCAAATCGGCGACACGAACAATGGACTAGACTCATTGTGCCAAAACTATGGTAGTGATGAGGATTGATATATTTATTTTTATATCGGTTTAGGTCACATTTTAATCTTTACCAACTTTATCTTGTATTCTACCTATTTTTAGGAAGTAATATTTTTCAATCCACCATTTCAATTGGCGATGTTTGTACAAACGAAAAGAAGAAAAGAACCCATGAAAAAGCCTTTGTTGGGTACGACGTTAAGTCTCGTCTTAAAATAAGTAAATTTCTCAAGTAAAATAATGTTTCGAAAGTCGTCGAGTTTTGTAAATTAAATTGGAAGGATTCCCCTGCCCCGGTTGGAAGGAGTAGTAGATTTGTAGCAATGGTAATGTAAAGCAAATGCTAGAAATTGTGAGGCCGGCAACTCAACTGGCTACCTCTTAAACATATTTTAAGATGCTTTTGTTCAAAGCTTTGCTGCTGCTTCAAATGGGGATGATTATGATAGTGATGTCTCCAACTTTGCATCCCCGTCAGAGGTTTGATTAAATGTCTCGATGCAATCTACCACAATGAATG

mRNA sequence

ATGATTAGAACATATTTGGGAATTCAACTGTTTAGATTCTACTTCAAGTGTACTAGATGTTCTGCTGAACTCACCATCAAGACAGACCCCCAAAACTCAGATTATATTGTAGAGTCGGGAGCCACACGTAATTTTGAACCGTGGCGTGAGGAGGATGAAGTTTCAGAGAAAGAGAAACACAAAAGGAATGCTGAAGAGATGGGGGATGCAATGAAATCTTTGGAGAATAGAACCTTGGATTCTAAACGCGAGATGGACATCCTTGCTGCTTTGGATGAGATGAAGTCTATGAAGTCCAGACACGCAACTGTGAGTATTGATTCAATGCTTTTGGCTTTGCAACAAACTGCAGCAGAAAAGGAAAAGAAGTTAGAAGAAGAGGATGAAGCGTTGATAAAATCAATAGTCTTCAACAACTCAAACAATTATGTTAAAAGAATTTCAGATGATCAGTTTGATGATAGCAGTCCTTCTGAACAACCTTCAACCAACAATGACAAAACATCCAACATTAATGCTAAGAAGCAAAAGCTCTCTGAAGAATCTCCACATGATGATCCTACTACAACGACAAAAGATGTTATTCTTCATAGCACGGGTGAAGGAGGCGATGGCAATGGCGCCACATCCAGTGATGCTAAGTTGATTTCTAAATCCTTGTCAATTAAGGTTTCCATTGTTAAGAAACCAGAATTGAGTCCTCGGGTGGAGACCAAACAGAAGTTGGAGGTTCAAATCGGCGACACGAACAATGGACTAGACTCATTGTGCCAAAACTATGGTAGTGATGAGGATTGATATATTTATTTTTATATCGGTTTAGGTCACATTTTAATCTTTACCAACTTTATCTTGTATTCTACCTATTTTTAGGAAGTAATATTTTTCAATCCACCATTTCAATTGGCGATGTTTGTACAAACGAAAAGAAGAAAAGAACCCATGAAAAAGCCTTTGTTGGGTACGACGTTAAGTCTCGTCTTAAAATAAGTAAATTTCTCAAGTAAAATAATGTTTCGAAAGTCGTCGAGTTTTGTAAATTAAATTGGAAGGATTCCCCTGCCCCGGTTGGAAGGAGTAGTAGATTTGTAGCAATGGTAATGTAAAGCAAATGCTAGAAATTGTGAGGCCGGCAACTCAACTGGCTACCTCTTAAACATATTTTAAGATGCTTTTGTTCAAAGCTTTGCTGCTGCTTCAAATGGGGATGATTATGATAGTGATGTCTCCAACTTTGCATCCCCGTCAGAGGTTTGATTAAATGTCTCGATGCAATCTACCACAATGAATG

Coding sequence (CDS)

ATGATTAGAACATATTTGGGAATTCAACTGTTTAGATTCTACTTCAAGTGTACTAGATGTTCTGCTGAACTCACCATCAAGACAGACCCCCAAAACTCAGATTATATTGTAGAGTCGGGAGCCACACGTAATTTTGAACCGTGGCGTGAGGAGGATGAAGTTTCAGAGAAAGAGAAACACAAAAGGAATGCTGAAGAGATGGGGGATGCAATGAAATCTTTGGAGAATAGAACCTTGGATTCTAAACGCGAGATGGACATCCTTGCTGCTTTGGATGAGATGAAGTCTATGAAGTCCAGACACGCAACTGTGAGTATTGATTCAATGCTTTTGGCTTTGCAACAAACTGCAGCAGAAAAGGAAAAGAAGTTAGAAGAAGAGGATGAAGCGTTGATAAAATCAATAGTCTTCAACAACTCAAACAATTATGTTAAAAGAATTTCAGATGATCAGTTTGATGATAGCAGTCCTTCTGAACAACCTTCAACCAACAATGACAAAACATCCAACATTAATGCTAAGAAGCAAAAGCTCTCTGAAGAATCTCCACATGATGATCCTACTACAACGACAAAAGATGTTATTCTTCATAGCACGGGTGAAGGAGGCGATGGCAATGGCGCCACATCCAGTGATGCTAAGTTGATTTCTAAATCCTTGTCAATTAAGGTTTCCATTGTTAAGAAACCAGAATTGAGTCCTCGGGTGGAGACCAAACAGAAGTTGGAGGTTCAAATCGGCGACACGAACAATGGACTAGACTCATTGTGCCAAAACTATGGTAGTGATGAGGATTGA

Protein sequence

MIRTYLGIQLFRFYFKCTRCSAELTIKTDPQNSDYIVESGATRNFEPWREEDEVSEKEKHKRNAEEMGDAMKSLENRTLDSKREMDILAALDEMKSMKSRHATVSIDSMLLALQQTAAEKEKKLEEEDEALIKSIVFNNSNNYVKRISDDQFDDSSPSEQPSTNNDKTSNINAKKQKLSEESPHDDPTTTTKDVILHSTGEGGDGNGATSSDAKLISKSLSIKVSIVKKPELSPRVETKQKLEVQIGDTNNGLDSLCQNYGSDED

Homology

[Close]

BLAST of Cp4.1LG20g06890 vs. ExPASy Swiss-Prot
Match: Q54WR5 (Splicing factor YJU2 OS=Dictyostelium discoideum OX=44689 GN=yju2 PE=3 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 1.1e-30
Identity = 90/220 (40.91%), Postives = 129/220 (58.64%), Query Frame = 0


Query: 5   YLGIQLFRFYFKCTRCSAELTIKTDPQNSDYIVESGATRNFEPWREEDEVSEKEKHKRNA 64
           YLGI+++RF+ +C +C+AELTIKTDP+NS+Y+ ESGATRN+EPW+E DE       K   
Sbjct: 68  YLGIKIYRFFLRCKKCAAELTIKTDPKNSEYVCESGATRNYEPWKETDEEKSNRMTKEQE 127

Query: 65  EEMGDAMKSLENRTLDSKREMDILAALDEMKSMKSRHATVSIDSMLLALQQTAAEKEKKL 124
           EE  DAM +LENRTL+SKREM++L AL+E+KS+ SR++ +  + +L    Q    +EK  
Sbjct: 128 EEQ-DAMIALENRTLESKREMEMLDALEEIKSLNSRNSEIDTEQLLEYNLQKQELEEKLQ 187

Query: 125 EEEDEALIKSIVFNNSN-------------------NYVKRISDDQ---------FDDSS 184
           +EED+ L+KSI FNN N                   N +KRI +D          F +++
Sbjct: 188 DEEDDLLVKSI-FNNKNKLELNQINDNNSINNNIDSNKIKRIENDDDDGDKFNSLFSNNN 247

Query: 185 PSEQPSTNNDKTSNINAKKQKLSEESPHDDPTTTTKDVIL 197
            + +   NN+  +N N     +S  +    PTT  K  IL
Sbjct: 248 KNNKNIINNNNNNNNNINTTSIS-NTIETTPTTNQKTSIL 284

[Close]

BLAST of Cp4.1LG20g06890 vs. ExPASy Swiss-Prot
Match: Q9D6J3 (Splicing factor YJU2 OS=Mus musculus OX=10090 GN=Yju2 PE=1 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 1.5e-24
Identity = 63/157 (40.13%), Postives = 100/157 (63.69%), Query Frame = 0


Query: 5   YLGIQLFRFYFKCTRCSAELTIKTDPQNSDYIVESGATRNFEPWREEDEVSEKEKHKRNA 64
           YLG+ +FRFY KCTRC AE+T KTDP+N+DY +E GATRNF+  +  +E  ++ + +R  
Sbjct: 68  YLGLPIFRFYIKCTRCLAEITFKTDPENTDYTMEHGATRNFQAEKLLEEEEKRVQKERED 127

Query: 65  EEMGDAMKSLENRTLDSKREMDILAALDEMKSMKSRHATVSIDSMLLALQQTAAEKEKKL 124
           EE+ + MK LENRT DSK EM++L  L E+K +  R A V  ++ML   + +  + +++ 
Sbjct: 128 EELNNPMKVLENRTKDSKLEMEVLENLQELKDLNQRQAHVDFEAMLRQHRMSQEQWQQQQ 187

Query: 125 EEEDEALIKSIVFNNSNNYVKRISDDQFDDSSPSEQP 162
           EEEDE    +++      + + + D + +D +P  +P
Sbjct: 188 EEEDERETAALL--EEARHRRLLEDSESEDEAPPSRP 222

[Close]

BLAST of Cp4.1LG20g06890 vs. ExPASy Swiss-Prot
Match: A8WHR3 (Splicing factor YJU2 OS=Danio rerio OX=7955 GN=yju2 PE=1 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 3.4e-24
Identity = 72/187 (38.50%), Postives = 107/187 (57.22%), Query Frame = 0


Query: 5   YLGIQLFRFYFKCTRCSAELTIKTDPQNSDYIVESGATRNFEPWREEDEVSEKEKHKRNA 64
           YLG+ +FRFY KCTRC AE+T KTDP+N+DY +E GATRNF+  +  +E  +K + +R  
Sbjct: 68  YLGLPIFRFYIKCTRCLAEITFKTDPENTDYAMEHGATRNFQAEKLIEEEEKKIQQERED 127

Query: 65  EEMGDAMKSLENRTLDSKREMDILAALDEMKSMKSRHATVSIDSMLLALQQTAAEKEKKL 124
           EE+ + MK LENRT DSK EM++L  L E+K +  R A V  + ML   ++    ++++ 
Sbjct: 128 EELNNPMKVLENRTRDSKLEMEVLENLQELKELNQRQAQVDFEGMLGQYKELEQRQKQRE 187

Query: 125 EEEDEALIKSIVFNNSNNYVKRISDDQFDDSSPSEQPSTNNDKTSNINAKKQKLSEESPH 184
           +EEDE   K ++       VKR+ D            S + ++  N   + +K   + P 
Sbjct: 188 QEEDEQETKEML---ERALVKRLRD------------SDSEEEAENAKERSKKHIADKPT 239

Query: 185 DDPTTTT 192
           D  TT T
Sbjct: 248 DILTTDT 239

[Close]

BLAST of Cp4.1LG20g06890 vs. ExPASy Swiss-Prot
Match: Q9BW85 (Splicing factor YJU2 OS=Homo sapiens OX=9606 GN=YJU2 PE=1 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 2.9e-23
Identity = 71/179 (39.66%), Postives = 111/179 (62.01%), Query Frame = 0


Query: 5   YLGIQLFRFYFKCTRCSAELTIKTDPQNSDYIVESGATRNFEPWREEDEVSEKEKHKRNA 64
           YLG+ +FRFY KCTRC AE+T KTDP+N+DY +E GATRNF+  +  +E  ++ + +R  
Sbjct: 68  YLGLPIFRFYIKCTRCLAEITFKTDPENTDYTMEHGATRNFQAEKLLEEEEKRVQKERED 127

Query: 65  EEMGDAMKSLENRTLDSKREMDILAALDEMKSMKSRHATVSIDSMLLALQQTAAEKEKKL 124
           EE+ + MK LENRT DSK EM++L  L E+K +  R A V  ++ML   + +  E+ ++ 
Sbjct: 128 EELNNPMKVLENRTKDSKLEMEVLENLQELKDLNQRQAHVDFEAMLRQHRLSEEERRRQQ 187

Query: 125 EEEDEALIKSIVFNNSNNYVKRISDDQFDDSSPSE-QPSTNNDKTSNIN-AKKQKLSEE 182
           +EEDE    +++       +   SD + D+++PS  QP+   + T+ ++ A K K   E
Sbjct: 188 QEEDEQETAALLEEARKRRLLEDSDSE-DEAAPSPLQPALRPNPTAILDEAPKPKRKVE 245

[Close]

BLAST of Cp4.1LG20g06890 vs. ExPASy Swiss-Prot
Match: Q9P7C5 (Splicing factor YJU2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=cwf16 PE=1 SV=2)

HSP 1 Score: 106.3 bits (264), Expect = 5.4e-22
Identity = 61/154 (39.61%), Postives = 93/154 (60.39%), Query Frame = 0


Query: 5   YLGIQLFRFYFKCTRCSAELTIKTDPQNSDYIVESGATRNFEPWREE--DEVSEKEKHKR 64
           Y  I + RFY +CTRC+AE+T  TDP+++DY  ESGA+RN+EPW E+   E  E E  +R
Sbjct: 72  YFSIDILRFYIRCTRCAAEITFITDPKHADYAAESGASRNYEPWHEKRLQEYEENELAER 131

Query: 65  NAEEMGDAMKSLENRTLDSKREMDILAALDEMKSMKSRHATVSIDSMLLALQQTA----- 124
           N     D M+ LE +TLD+KR+M I  ALDE++   +R + V+ID  +  L++ A     
Sbjct: 132 NDIPEEDEMEKLEQKTLDTKRQMQISDALDELREKSARRSRVNIDDAIALLKEDAYGSIE 191

Query: 125 ---AEKEKKLEEEDEALIKSIVFNNSNNYVKRIS 149
              ++K K  EEE +   KS+  +     ++R++
Sbjct: 192 EEESKKRKFEEEEIDREAKSLFSSQDGEIIRRLN 225

[Close]

BLAST of Cp4.1LG20g06890 vs. NCBI nr
Match: XP_023519851.1 (coiled-coil domain-containing protein 94 homolog [Cucurbita pepo subsp. pepo])

HSP 1 Score: 491 bits (1263), Expect = 2.80e-173
Identity = 262/262 (100.00%), Postives = 262/262 (100.00%), Query Frame = 0


Query: 4   TYLGIQLFRFYFKCTRCSAELTIKTDPQNSDYIVESGATRNFEPWREEDEVSEKEKHKRN 63
           TYLGIQLFRFYFKCTRCSAELTIKTDPQNSDYIVESGATRNFEPWREEDEVSEKEKHKRN
Sbjct: 67  TYLGIQLFRFYFKCTRCSAELTIKTDPQNSDYIVESGATRNFEPWREEDEVSEKEKHKRN 126

Query: 64  AEEMGDAMKSLENRTLDSKREMDILAALDEMKSMKSRHATVSIDSMLLALQQTAAEKEKK 123
           AEEMGDAMKSLENRTLDSKREMDILAALDEMKSMKSRHATVSIDSMLLALQQTAAEKEKK
Sbjct: 127 AEEMGDAMKSLENRTLDSKREMDILAALDEMKSMKSRHATVSIDSMLLALQQTAAEKEKK 186

Query: 124 LEEEDEALIKSIVFNNSNNYVKRISDDQFDDSSPSEQPSTNNDKTSNINAKKQKLSEESP 183
           LEEEDEALIKSIVFNNSNNYVKRISDDQFDDSSPSEQPSTNNDKTSNINAKKQKLSEESP
Sbjct: 187 LEEEDEALIKSIVFNNSNNYVKRISDDQFDDSSPSEQPSTNNDKTSNINAKKQKLSEESP 246

Query: 184 HDDPTTTTKDVILHSTGEGGDGNGATSSDAKLISKSLSIKVSIVKKPELSPRVETKQKLE 243
           HDDPTTTTKDVILHSTGEGGDGNGATSSDAKLISKSLSIKVSIVKKPELSPRVETKQKLE
Sbjct: 247 HDDPTTTTKDVILHSTGEGGDGNGATSSDAKLISKSLSIKVSIVKKPELSPRVETKQKLE 306

Query: 244 VQIGDTNNGLDSLCQNYGSDED 265
           VQIGDTNNGLDSLCQNYGSDED
Sbjct: 307 VQIGDTNNGLDSLCQNYGSDED 328

[Close]

BLAST of Cp4.1LG20g06890 vs. NCBI nr
Match: XP_022932207.1 (coiled-coil domain-containing protein 94 homolog isoform X1 [Cucurbita moschata])

HSP 1 Score: 478 bits (1230), Expect = 3.08e-168
Identity = 256/263 (97.34%), Postives = 260/263 (98.86%), Query Frame = 0


Query: 4   TYLGIQLFRFYFKCTRCSAELTIKTDPQNSDYIVESGATRNFEPWREEDEVSEKEKHKRN 63
           TYLGIQLFRFYFKCTRCSAELTIKTDPQNSDYIVESGATRNFEPWREEDEVSEKEKHKR+
Sbjct: 67  TYLGIQLFRFYFKCTRCSAELTIKTDPQNSDYIVESGATRNFEPWREEDEVSEKEKHKRS 126

Query: 64  AEEMGDAMKSLENRTLDSKREMDILAALDEMKSMKSRHATVSIDSMLLALQQTAAEKEKK 123
           AEEMGDAMKSLENRTLDSKREMDILAALDEMKSMKSRHATVSIDSMLLALQQTAAEKEKK
Sbjct: 127 AEEMGDAMKSLENRTLDSKREMDILAALDEMKSMKSRHATVSIDSMLLALQQTAAEKEKK 186

Query: 124 LEEEDEALIKSIVFNNSNNYVKRISDDQFDDSSPSEQPSTNNDKTSNINAKKQKLSEESP 183
           LEEEDEALIKSIVFNNSNNYVKRISDDQFDDSSPSEQPSTNNDKTSNINAKKQKLSEESP
Sbjct: 187 LEEEDEALIKSIVFNNSNNYVKRISDDQFDDSSPSEQPSTNNDKTSNINAKKQKLSEESP 246

Query: 184 HDDPTTTTKDVILHS-TGEGGDGNGATSSDAKLISKSLSIKVSIVKKPELSPRVETKQKL 243
           HDDPTTTTKD ILHS TGEGGDGNGATS DAKLISKSLSIKVSI+KKPEL+PRVETKQKL
Sbjct: 247 HDDPTTTTKDAILHSLTGEGGDGNGATSGDAKLISKSLSIKVSIIKKPELTPRVETKQKL 306

Query: 244 EVQIGDTNNGLDSLCQNYGSDED 265
           EVQIGDTNNGL+SLCQNYGSDED
Sbjct: 307 EVQIGDTNNGLESLCQNYGSDED 329

[Close]

BLAST of Cp4.1LG20g06890 vs. NCBI nr
Match: XP_022970327.1 (coiled-coil domain-containing protein 94 homolog [Cucurbita maxima])

HSP 1 Score: 474 bits (1219), Expect = 1.46e-166
Identity = 254/263 (96.58%), Postives = 259/263 (98.48%), Query Frame = 0


Query: 4   TYLGIQLFRFYFKCTRCSAELTIKTDPQNSDYIVESGATRNFEPWREEDEVSEKEKHKRN 63
           TYLGIQLFRFYFKCTRCSAELTIKTDPQNSDYIVESGATRNFEPWREEDEVSEKEKHKRN
Sbjct: 67  TYLGIQLFRFYFKCTRCSAELTIKTDPQNSDYIVESGATRNFEPWREEDEVSEKEKHKRN 126

Query: 64  AEEMGDAMKSLENRTLDSKREMDILAALDEMKSMKSRHATVSIDSMLLALQQTAAEKEKK 123
           AEEMGDAMKSLENRTLDSKREMDILAALDEMKSMKSRHATVSIDSMLLALQQTAAEKEKK
Sbjct: 127 AEEMGDAMKSLENRTLDSKREMDILAALDEMKSMKSRHATVSIDSMLLALQQTAAEKEKK 186

Query: 124 LEEEDEALIKSIVFNNSNNYVKRISDDQFDDSSPSEQPSTNNDKTSNINAKKQKLSEESP 183
           LEEEDEALIKSIVFNNSNNYV+RISDDQFD SSPSEQPSTNNDKTSNINAKKQKLSEESP
Sbjct: 187 LEEEDEALIKSIVFNNSNNYVRRISDDQFDGSSPSEQPSTNNDKTSNINAKKQKLSEESP 246

Query: 184 HDDPTTTTKDVILHS-TGEGGDGNGATSSDAKLISKSLSIKVSIVKKPELSPRVETKQKL 243
           HDDPTTT KDVILHS TGEGGDGNGATSSDAK ISKSLSIKVSI+KKPEL+PRVETKQKL
Sbjct: 247 HDDPTTTPKDVILHSLTGEGGDGNGATSSDAKFISKSLSIKVSIIKKPELTPRVETKQKL 306

Query: 244 EVQIGDTNNGLDSLCQNYGSDED 265
           EVQIGDTNNGL+SLCQNYGS+ED
Sbjct: 307 EVQIGDTNNGLESLCQNYGSEED 329

[Close]

BLAST of Cp4.1LG20g06890 vs. NCBI nr
Match: KAG7011084.1 (Coiled-coil domain-containing protein 94-like protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 448 bits (1152), Expect = 1.40e-156
Identity = 245/263 (93.16%), Postives = 248/263 (94.30%), Query Frame = 0


Query: 4   TYLGIQLFRFYFKCTRCSAELTIKTDPQNSDYIVESGATRNFEPWREEDEVSEKEKHKRN 63
           TYLGIQLFRFYFKCTRCSAELTIKTDPQNSDYIVESGATRNFEPWREEDEVSEKEKHKRN
Sbjct: 64  TYLGIQLFRFYFKCTRCSAELTIKTDPQNSDYIVESGATRNFEPWREEDEVSEKEKHKRN 123

Query: 64  AEEMGDAMKSLENRTLDSKREMDILAALDEMKSMKSRHATVSIDSMLLALQQTAAEKEKK 123
           AEEMGDAMKSLENRTLDSKREMDILAALDEMKSMKSRHATVSIDSMLLALQQTAAEKEKK
Sbjct: 124 AEEMGDAMKSLENRTLDSKREMDILAALDEMKSMKSRHATVSIDSMLLALQQTAAEKEKK 183

Query: 124 LEEEDEALIKSIVFNNSNNYVKRISDDQFDDSSPSEQPSTNNDKTSNINAKKQKLSEESP 183
           LEEEDEALIKSIVFNNSNNYVKRISDDQFDDSSPSEQPSTN DKTSNINAKKQKLSEESP
Sbjct: 184 LEEEDEALIKSIVFNNSNNYVKRISDDQFDDSSPSEQPSTNKDKTSNINAKKQKLSEESP 243

Query: 184 HDDPTTTTKDVILHS-TGEGGDGNGATSSDAKLISKSLSIKVSIVKKPELSPRVETKQKL 243
           HDDPTTTTKD ILHS TGEGGDGNGATSSDAKLISKSLSIKVSI+KKPEL+PRVE     
Sbjct: 244 HDDPTTTTKDAILHSLTGEGGDGNGATSSDAKLISKSLSIKVSIIKKPELAPRVEM---- 303

Query: 244 EVQIGDTNNGLDSLCQNYGSDED 265
                  NNGL+SLCQNYGSDED
Sbjct: 304 -------NNGLESLCQNYGSDED 315

[Close]

BLAST of Cp4.1LG20g06890 vs. NCBI nr
Match: KAG6583657.1 (Splicing factor YJU2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 448 bits (1152), Expect = 1.56e-156
Identity = 245/263 (93.16%), Postives = 248/263 (94.30%), Query Frame = 0


Query: 4   TYLGIQLFRFYFKCTRCSAELTIKTDPQNSDYIVESGATRNFEPWREEDEVSEKEKHKRN 63
           TYLGIQLFRFYFKCTRCSAELTIKTDPQNSDYIVESGATRNFEPWREEDEVSEKEKHKRN
Sbjct: 67  TYLGIQLFRFYFKCTRCSAELTIKTDPQNSDYIVESGATRNFEPWREEDEVSEKEKHKRN 126

Query: 64  AEEMGDAMKSLENRTLDSKREMDILAALDEMKSMKSRHATVSIDSMLLALQQTAAEKEKK 123
           AEEMGDAMKSLENRTLDSKREMDILAALDEMKSMKSRHATVSIDSMLLALQQTAAEKEKK
Sbjct: 127 AEEMGDAMKSLENRTLDSKREMDILAALDEMKSMKSRHATVSIDSMLLALQQTAAEKEKK 186

Query: 124 LEEEDEALIKSIVFNNSNNYVKRISDDQFDDSSPSEQPSTNNDKTSNINAKKQKLSEESP 183
           LEEEDEALIKSIVFNNSNNYVKRISDDQFDDSSPSEQPSTN DKTSNINAKKQKLSEESP
Sbjct: 187 LEEEDEALIKSIVFNNSNNYVKRISDDQFDDSSPSEQPSTNKDKTSNINAKKQKLSEESP 246

Query: 184 HDDPTTTTKDVILHS-TGEGGDGNGATSSDAKLISKSLSIKVSIVKKPELSPRVETKQKL 243
           HDDPTTTTKD ILHS TGEGGDGNGATSSDAKLISKSLSIKVSI+KKPEL+PRVE     
Sbjct: 247 HDDPTTTTKDAILHSLTGEGGDGNGATSSDAKLISKSLSIKVSIIKKPELAPRVEM---- 306

Query: 244 EVQIGDTNNGLDSLCQNYGSDED 265
                  NNGL+SLCQNYGSDED
Sbjct: 307 -------NNGLESLCQNYGSDED 318

[Close]

BLAST of Cp4.1LG20g06890 vs. ExPASy TrEMBL
Match: A0A6J1EW00 (Splicing factor YJU2 OS=Cucurbita moschata OX=3662 GN=LOC111438528 PE=3 SV=1)

HSP 1 Score: 478 bits (1230), Expect = 1.49e-168
Identity = 256/263 (97.34%), Postives = 260/263 (98.86%), Query Frame = 0


Query: 4   TYLGIQLFRFYFKCTRCSAELTIKTDPQNSDYIVESGATRNFEPWREEDEVSEKEKHKRN 63
           TYLGIQLFRFYFKCTRCSAELTIKTDPQNSDYIVESGATRNFEPWREEDEVSEKEKHKR+
Sbjct: 67  TYLGIQLFRFYFKCTRCSAELTIKTDPQNSDYIVESGATRNFEPWREEDEVSEKEKHKRS 126

Query: 64  AEEMGDAMKSLENRTLDSKREMDILAALDEMKSMKSRHATVSIDSMLLALQQTAAEKEKK 123
           AEEMGDAMKSLENRTLDSKREMDILAALDEMKSMKSRHATVSIDSMLLALQQTAAEKEKK
Sbjct: 127 AEEMGDAMKSLENRTLDSKREMDILAALDEMKSMKSRHATVSIDSMLLALQQTAAEKEKK 186

Query: 124 LEEEDEALIKSIVFNNSNNYVKRISDDQFDDSSPSEQPSTNNDKTSNINAKKQKLSEESP 183
           LEEEDEALIKSIVFNNSNNYVKRISDDQFDDSSPSEQPSTNNDKTSNINAKKQKLSEESP
Sbjct: 187 LEEEDEALIKSIVFNNSNNYVKRISDDQFDDSSPSEQPSTNNDKTSNINAKKQKLSEESP 246

Query: 184 HDDPTTTTKDVILHS-TGEGGDGNGATSSDAKLISKSLSIKVSIVKKPELSPRVETKQKL 243
           HDDPTTTTKD ILHS TGEGGDGNGATS DAKLISKSLSIKVSI+KKPEL+PRVETKQKL
Sbjct: 247 HDDPTTTTKDAILHSLTGEGGDGNGATSGDAKLISKSLSIKVSIIKKPELTPRVETKQKL 306

Query: 244 EVQIGDTNNGLDSLCQNYGSDED 265
           EVQIGDTNNGL+SLCQNYGSDED
Sbjct: 307 EVQIGDTNNGLESLCQNYGSDED 329

[Close]

BLAST of Cp4.1LG20g06890 vs. ExPASy TrEMBL
Match: A0A6J1HYT1 (Splicing factor YJU2 OS=Cucurbita maxima OX=3661 GN=LOC111469322 PE=3 SV=1)

HSP 1 Score: 474 bits (1219), Expect = 7.05e-167
Identity = 254/263 (96.58%), Postives = 259/263 (98.48%), Query Frame = 0


Query: 4   TYLGIQLFRFYFKCTRCSAELTIKTDPQNSDYIVESGATRNFEPWREEDEVSEKEKHKRN 63
           TYLGIQLFRFYFKCTRCSAELTIKTDPQNSDYIVESGATRNFEPWREEDEVSEKEKHKRN
Sbjct: 67  TYLGIQLFRFYFKCTRCSAELTIKTDPQNSDYIVESGATRNFEPWREEDEVSEKEKHKRN 126

Query: 64  AEEMGDAMKSLENRTLDSKREMDILAALDEMKSMKSRHATVSIDSMLLALQQTAAEKEKK 123
           AEEMGDAMKSLENRTLDSKREMDILAALDEMKSMKSRHATVSIDSMLLALQQTAAEKEKK
Sbjct: 127 AEEMGDAMKSLENRTLDSKREMDILAALDEMKSMKSRHATVSIDSMLLALQQTAAEKEKK 186

Query: 124 LEEEDEALIKSIVFNNSNNYVKRISDDQFDDSSPSEQPSTNNDKTSNINAKKQKLSEESP 183
           LEEEDEALIKSIVFNNSNNYV+RISDDQFD SSPSEQPSTNNDKTSNINAKKQKLSEESP
Sbjct: 187 LEEEDEALIKSIVFNNSNNYVRRISDDQFDGSSPSEQPSTNNDKTSNINAKKQKLSEESP 246

Query: 184 HDDPTTTTKDVILHS-TGEGGDGNGATSSDAKLISKSLSIKVSIVKKPELSPRVETKQKL 243
           HDDPTTT KDVILHS TGEGGDGNGATSSDAK ISKSLSIKVSI+KKPEL+PRVETKQKL
Sbjct: 247 HDDPTTTPKDVILHSLTGEGGDGNGATSSDAKFISKSLSIKVSIIKKPELTPRVETKQKL 306

Query: 244 EVQIGDTNNGLDSLCQNYGSDED 265
           EVQIGDTNNGL+SLCQNYGS+ED
Sbjct: 307 EVQIGDTNNGLESLCQNYGSEED 329

[Close]

BLAST of Cp4.1LG20g06890 vs. ExPASy TrEMBL
Match: A0A6J1HNB0 (Splicing factor YJU2 OS=Cucurbita maxima OX=3661 GN=LOC111465203 PE=3 SV=1)

HSP 1 Score: 390 bits (1003), Expect = 5.22e-134
Identity = 211/263 (80.23%), Postives = 232/263 (88.21%), Query Frame = 0


Query: 4   TYLGIQLFRFYFKCTRCSAELTIKTDPQNSDYIVESGATRNFEPWREEDEVSEKEKHKRN 63
           TYLGIQLFRFYFKCTRCSAELTIKTDP+NSDY VESGATRNFEPWR+EDE SEKEKHKRN
Sbjct: 67  TYLGIQLFRFYFKCTRCSAELTIKTDPKNSDYTVESGATRNFEPWRDEDEASEKEKHKRN 126

Query: 64  AEEMGDAMKSLENRTLDSKREMDILAALDEMKSMKSRHATVSIDSMLLALQQTAAEKEKK 123
           AEEMGD MKSLENRTLDSKREMDILAALDEMKSMKSRHATVSIDSML+ALQQTAAEKEKK
Sbjct: 127 AEEMGDPMKSLENRTLDSKREMDILAALDEMKSMKSRHATVSIDSMLVALQQTAAEKEKK 186

Query: 124 LEEEDEALIKSIVFNNSNNYVKRISDDQFDDSSPSEQPSTNNDKTSNINAKKQKLSEESP 183
           LEEEDEALIKSIVFNNSNNYV+RISDD+FDD++   Q ST+ND+T +  AKKQK+SEE P
Sbjct: 187 LEEEDEALIKSIVFNNSNNYVRRISDDEFDDNNHFVQHSTSNDETFDFRAKKQKISEEFP 246

Query: 184 HDDPTTTTKDVILHST-GEGGDGNGATSSDAKLISKSLSIKVSIVKKPELSPRVETKQKL 243
           HD   T+TK  +LH+  GEG DGN  TSS +K +SKSL ++VSI+KKPEL+ RVE KQ L
Sbjct: 247 HDPTNTSTKAAVLHALKGEGSDGNVGTSSVSKFVSKSLPVRVSIIKKPELTARVENKQSL 306

Query: 244 EVQIGDTNNGLDSLCQNYGSDED 265
           EVQI DTN GL+SLCQ Y SDED
Sbjct: 307 EVQISDTNTGLESLCQYYASDED 329

[Close]

BLAST of Cp4.1LG20g06890 vs. ExPASy TrEMBL
Match: A0A6J1E6Q8 (Splicing factor YJU2 OS=Cucurbita moschata OX=3662 GN=LOC111431206 PE=3 SV=1)

HSP 1 Score: 387 bits (994), Expect = 1.22e-132
Identity = 210/263 (79.85%), Postives = 230/263 (87.45%), Query Frame = 0


Query: 4   TYLGIQLFRFYFKCTRCSAELTIKTDPQNSDYIVESGATRNFEPWREEDEVSEKEKHKRN 63
           TYLGIQLFRFYFKCTRCSAELTIKTDP+NSDY VESGATRNFEPWR+EDE SEKEKHKRN
Sbjct: 67  TYLGIQLFRFYFKCTRCSAELTIKTDPKNSDYTVESGATRNFEPWRDEDEASEKEKHKRN 126

Query: 64  AEEMGDAMKSLENRTLDSKREMDILAALDEMKSMKSRHATVSIDSMLLALQQTAAEKEKK 123
           AEEMGD MKSLENRTLDSKREMDILAALDEMKSMKSRHATVSIDSML ALQQTAAEKEKK
Sbjct: 127 AEEMGDPMKSLENRTLDSKREMDILAALDEMKSMKSRHATVSIDSMLTALQQTAAEKEKK 186

Query: 124 LEEEDEALIKSIVFNNSNNYVKRISDDQFDDSSPSEQPSTNNDKTSNINAKKQKLSEESP 183
           LEEEDEALIKSIVFN SNNYV+RISDD+FDD++   Q STNND+T +  AKKQK+SEE P
Sbjct: 187 LEEEDEALIKSIVFNKSNNYVRRISDDEFDDNNHFVQHSTNNDETFDFRAKKQKISEEFP 246

Query: 184 HDDPTTTTKDVILHS-TGEGGDGNGATSSDAKLISKSLSIKVSIVKKPELSPRVETKQKL 243
           HD   T+TK  +L++ TGEG DGN  TSS +K +SKSL ++VSI+KKPEL+ RVE KQ L
Sbjct: 247 HDPTNTSTKAAVLNALTGEGSDGNVGTSSVSKFVSKSLPVRVSIIKKPELTARVENKQSL 306

Query: 244 EVQIGDTNNGLDSLCQNYGSDED 265
           EVQ  DTN GL+SLCQ Y SDED
Sbjct: 307 EVQTSDTNTGLESLCQYYASDED 329

[Close]

BLAST of Cp4.1LG20g06890 vs. ExPASy TrEMBL
Match: A0A6J1EWD7 (Splicing factor YJU2 OS=Cucurbita moschata OX=3662 GN=LOC111438528 PE=3 SV=1)

HSP 1 Score: 367 bits (943), Expect = 1.10e-125
Identity = 198/201 (98.51%), Postives = 199/201 (99.00%), Query Frame = 0


Query: 4   TYLGIQLFRFYFKCTRCSAELTIKTDPQNSDYIVESGATRNFEPWREEDEVSEKEKHKRN 63
           TYLGIQLFRFYFKCTRCSAELTIKTDPQNSDYIVESGATRNFEPWREEDEVSEKEKHKR+
Sbjct: 67  TYLGIQLFRFYFKCTRCSAELTIKTDPQNSDYIVESGATRNFEPWREEDEVSEKEKHKRS 126

Query: 64  AEEMGDAMKSLENRTLDSKREMDILAALDEMKSMKSRHATVSIDSMLLALQQTAAEKEKK 123
           AEEMGDAMKSLENRTLDSKREMDILAALDEMKSMKSRHATVSIDSMLLALQQTAAEKEKK
Sbjct: 127 AEEMGDAMKSLENRTLDSKREMDILAALDEMKSMKSRHATVSIDSMLLALQQTAAEKEKK 186

Query: 124 LEEEDEALIKSIVFNNSNNYVKRISDDQFDDSSPSEQPSTNNDKTSNINAKKQKLSEESP 183
           LEEEDEALIKSIVFNNSNNYVKRISDDQFDDSSPSEQPSTNNDKTSNINAKKQKLSEESP
Sbjct: 187 LEEEDEALIKSIVFNNSNNYVKRISDDQFDDSSPSEQPSTNNDKTSNINAKKQKLSEESP 246

Query: 184 HDDPTTTTKDVILHS-TGEGG 203
           HDDPTTTTKD ILHS TGEGG
Sbjct: 247 HDDPTTTTKDAILHSLTGEGG 267

[Close]

BLAST of Cp4.1LG20g06890 vs. TAIR 10
Match: AT1G17130.2 (Family of unknown function (DUF572) )

HSP 1 Score: 245.7 bits (626), Expect = 4.1e-65
Identity = 156/273 (57.14%), Postives = 195/273 (71.43%), Query Frame = 0


Query: 2   IRTYLGIQLFRFYFKCTRCSAELTIKTDPQNSDYIVESGATRNFEPWREEDEVSEKEKHK 61
           ++TYLGIQ+FRFYFKCT+CSAELT+KTDPQNSDYIVESGA+RN+EPWR EDE  +K+K K
Sbjct: 72  VQTYLGIQIFRFYFKCTKCSAELTMKTDPQNSDYIVESGASRNYEPWRAEDEEVDKDKQK 131

Query: 62  RNAEEMGDAMKSLENRTLDSKREMDILAALDEMKSMKSRHATVSIDSMLLALQQTAAEKE 121
           R+AEEMGDAMKSLENRTLDSKREMDI+AALDEMKSMKSRHATVS+D+ML ALQ+T AEK 
Sbjct: 132 RDAEEMGDAMKSLENRTLDSKREMDIIAALDEMKSMKSRHATVSVDAMLEALQRTGAEKV 191

Query: 122 KKLEEEDEALIKSIVFNNSNNYVKRIS----DDQFDDSSPSEQPSTNNDK--TSNINAKK 181
           K++EEEDEA+IKSI F      ++RI+    DD +DD    + PS   +K  +S+  +KK
Sbjct: 192 KRIEEEDEAVIKSI-FGKQKEVIRRIADEEIDDDYDDDDIDDYPSLQKEKKGSSSDLSKK 251

Query: 182 QKLSEESPHDDPTTTTKDVILHSTGEGGDGNGATSSDAKLISKSLSIKVSIVKKPE---L 241
           +K +E SP  +PT    D++  S+ E         + +K   KS+ IKV I K+P+    
Sbjct: 252 RKATEVSP-SNPT----DILTSSSAE-NPKEPKKQAISKQPFKSVHIKV-IKKQPQPTSS 311

Query: 242 SPRVETKQKLEVQIGDTNNGLDSLCQNYGSDED 266
           S     K + +   G  N  L SL QNYGSDED
Sbjct: 312 STPAPAKPEEKKSDGAANTSLASLFQNYGSDED 336

[Close]

BLAST of Cp4.1LG20g06890 vs. TAIR 10
Match: AT1G17130.1 (Family of unknown function (DUF572) )

HSP 1 Score: 244.2 bits (622), Expect = 1.2e-64
Identity = 156/271 (57.56%), Postives = 193/271 (71.22%), Query Frame = 0


Query: 4   TYLGIQLFRFYFKCTRCSAELTIKTDPQNSDYIVESGATRNFEPWREEDEVSEKEKHKRN 63
           TYLGIQ+FRFYFKCT+CSAELT+KTDPQNSDYIVESGA+RN+EPWR EDE  +K+K KR+
Sbjct: 67  TYLGIQIFRFYFKCTKCSAELTMKTDPQNSDYIVESGASRNYEPWRAEDEEVDKDKQKRD 126

Query: 64  AEEMGDAMKSLENRTLDSKREMDILAALDEMKSMKSRHATVSIDSMLLALQQTAAEKEKK 123
           AEEMGDAMKSLENRTLDSKREMDI+AALDEMKSMKSRHATVS+D+ML ALQ+T AEK K+
Sbjct: 127 AEEMGDAMKSLENRTLDSKREMDIIAALDEMKSMKSRHATVSVDAMLEALQRTGAEKVKR 186

Query: 124 LEEEDEALIKSIVFNNSNNYVKRIS----DDQFDDSSPSEQPSTNNDK--TSNINAKKQK 183
           +EEEDEA+IKSI F      ++RI+    DD +DD    + PS   +K  +S+  +KK+K
Sbjct: 187 IEEEDEAVIKSI-FGKQKEVIRRIADEEIDDDYDDDDIDDYPSLQKEKKGSSSDLSKKRK 246

Query: 184 LSEESPHDDPTTTTKDVILHSTGEGGDGNGATSSDAKLISKSLSIKVSIVKKPE---LSP 243
            +E SP  +PT    D++  S+ E         + +K   KS+ IKV I K+P+    S 
Sbjct: 247 ATEVSP-SNPT----DILTSSSAE-NPKEPKKQAISKQPFKSVHIKV-IKKQPQPTSSST 306

Query: 244 RVETKQKLEVQIGDTNNGLDSLCQNYGSDED 266
               K + +   G  N  L SL QNYGSDED
Sbjct: 307 PAPAKPEEKKSDGAANTSLASLFQNYGSDED 329

[Close]

BLAST of Cp4.1LG20g06890 vs. TAIR 10
Match: AT2G32050.1 (Family of unknown function (DUF572) )

HSP 1 Score: 130.6 bits (327), Expect = 1.9e-30
Identity = 98/262 (37.40%), Postives = 133/262 (50.76%), Query Frame = 0


Query: 4   TYLGIQLFRFYFKCTRCSAELTIKTDPQNSDYIVESGATRNFEPWREEDEVSEKEKHKRN 63
           TYLGI++ RFYFKC++C  EL +KTDP+NS Y+ ESGAT  ++   EE++          
Sbjct: 67  TYLGIKIHRFYFKCSKCCTELILKTDPKNSSYVAESGATCVYDQHEEEEQ---------- 126

Query: 64  AEEMGDAMKSLENRTLDSKREMDILAALDEMKSMKSRHATVSIDSMLLALQQTAAEKEKK 123
           AE+ GD M SLE RTL SKRE+D++AALDEMKSMKSR  +VS+DSML  L +   E+E+ 
Sbjct: 127 AEDGGDRMSSLEKRTLVSKREVDVMAALDEMKSMKSRRVSVSVDSMLEDLSKRHKEEEEV 186

Query: 124 LEEEDEALIKSIVFNNSNNYVKRISDDQFDDSSPSEQPSTNNDKTSNINAKKQKLSEESP 183
            +EED ALIKS  F       +RI D++ D     E   T   +   ++ KK K      
Sbjct: 187 AKEEDAALIKSTKFGKQ----RRIVDEETD-----EMEKTKKVRMEAVDEKKPK------ 246

Query: 184 HDDPTTTTKDVILHSTGEGGDGNGATSSDAKLISKSLSIKVSIVKKPELSPRVETKQKLE 243
                                            +K L+  +++ KK              
Sbjct: 247 ---------------------------------TKKLACIITLKKKK------------- 253

Query: 244 VQIGDTNNGLDSLCQNYGSDED 266
                T+ GL SLC NYG+DE+
Sbjct: 307 ----TTSLGLASLCHNYGADEE 253

[Close]

BLAST of Cp4.1LG20g06890 vs. TAIR 10
Match: AT3G43250.1 (Family of unknown function (DUF572) )

HSP 1 Score: 114.0 bits (284), Expect = 1.8e-25
Identity = 77/181 (42.54%), Postives = 115/181 (63.54%), Query Frame = 0


Query: 4   TYLGIQLFRFYFKCTRCSAELTIKTDPQNSDYIVESGATRNFEPWREEDEVSEKEKHKRN 63
           TYLG+++ RFY KCT+C AELTIKTDP+N  Y VESGA+  +    E+ E  +K+KH+  
Sbjct: 67  TYLGLKIHRFYIKCTKCLAELTIKTDPKNHSYTVESGASCLYN-GHEDIEEEKKKKHE-- 126

Query: 64  AEEMGDAMKSLENRTLDSKREMDILAALDEMKSMKSRHATVSIDSMLLALQQTAAEKEKK 123
                +A++SLENRT+ SKRE++++A+LDE+KSMKSR A++S+D ML  L +   ++E+ 
Sbjct: 127 -----NALESLENRTVVSKREIEVMASLDELKSMKSRRASLSVDYMLEDLSRRKKQEEEN 186

Query: 124 LEEEDEALIKSIVFNN--SNNYVKRISDDQFDDSSPSEQPSTNNDKTSNINAKKQKLSEE 183
           +EE  E LIKSI F      +  K+ + + FD+    ++     D  +     K+K   E
Sbjct: 187 VEE--ELLIKSIKFGKRIRTDEEKKKNYEAFDEKKKKKKKPKKRDSGTVCIISKKKTGLE 237

[Close]

BLAST of Cp4.1LG20g06890 vs. TAIR 10
Match: AT2G29430.1 (Family of unknown function (DUF572) )

HSP 1 Score: 58.2 bits (139), Expect = 1.2e-08
Identity = 25/44 (56.82%), Postives = 34/44 (77.27%), Query Frame = 0


Query: 4  TYLGIQLFRFYFKCTRCSAELTIKTDPQNSDYIVESGATRNFEP 48
          TYLGI++FRF  +CT  S E+  +TDP+N+D+I+ESGATR   P
Sbjct: 40 TYLGIKIFRFQIQCTNGSHEMKFRTDPKNADFIIESGATRLLLP 83

The following BLAST results are available for this feature:

BLAST of Cp4.1LG20g06890 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q54WR5	1.1e-30	40.91	Splicing factor YJU2 OS=Dictyostelium discoideum OX=44689 GN=yju2 PE=3 SV=1	[more]
Q9D6J3	1.5e-24	40.13	Splicing factor YJU2 OS=Mus musculus OX=10090 GN=Yju2 PE=1 SV=1	[more]
A8WHR3	3.4e-24	38.50	Splicing factor YJU2 OS=Danio rerio OX=7955 GN=yju2 PE=1 SV=1	[more]
Q9BW85	2.9e-23	39.66	Splicing factor YJU2 OS=Homo sapiens OX=9606 GN=YJU2 PE=1 SV=1	[more]
Q9P7C5	5.4e-22	39.61	Splicing factor YJU2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=2...	[more]

BLAST of Cp4.1LG20g06890 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023519851.1	2.80e-173	100.00	coiled-coil domain-containing protein 94 homolog [Cucurbita pepo subsp. pepo]	[more]
XP_022932207.1	3.08e-168	97.34	coiled-coil domain-containing protein 94 homolog isoform X1 [Cucurbita moschata]	[more]
XP_022970327.1	1.46e-166	96.58	coiled-coil domain-containing protein 94 homolog [Cucurbita maxima]	[more]
KAG7011084.1	1.40e-156	93.16	Coiled-coil domain-containing protein 94-like protein, partial [Cucurbita argyro...	[more]
KAG6583657.1	1.56e-156	93.16	Splicing factor YJU2, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of Cp4.1LG20g06890 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EW00	1.49e-168	97.34	Splicing factor YJU2 OS=Cucurbita moschata OX=3662 GN=LOC111438528 PE=3 SV=1	[more]
A0A6J1HYT1	7.05e-167	96.58	Splicing factor YJU2 OS=Cucurbita maxima OX=3661 GN=LOC111469322 PE=3 SV=1	[more]
A0A6J1HNB0	5.22e-134	80.23	Splicing factor YJU2 OS=Cucurbita maxima OX=3661 GN=LOC111465203 PE=3 SV=1	[more]
A0A6J1E6Q8	1.22e-132	79.85	Splicing factor YJU2 OS=Cucurbita moschata OX=3662 GN=LOC111431206 PE=3 SV=1	[more]
A0A6J1EWD7	1.10e-125	98.51	Splicing factor YJU2 OS=Cucurbita moschata OX=3662 GN=LOC111438528 PE=3 SV=1	[more]

BLAST of Cp4.1LG20g06890 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G17130.2	4.1e-65	57.14	Family of unknown function (DUF572)	[more]
AT1G17130.1	1.2e-64	57.56	Family of unknown function (DUF572)	[more]
AT2G32050.1	1.9e-30	37.40	Family of unknown function (DUF572)	[more]
AT3G43250.1	1.8e-25	42.54	Family of unknown function (DUF572)	[more]
AT2G29430.1	1.2e-08	56.82	Family of unknown function (DUF572)	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 110..130
None	No IPR available	COILS	Coil	Coil	coord: 57..77
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 147..212
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 154..172
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 242..265
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 243..265
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 173..191
None	No IPR available	PANTHER	PTHR12111:SF7	BNAA02G14200D PROTEIN	coord: 3..265
IPR007590	Saf4/Yju2 protein	PFAM	PF04502	DUF572	coord: 4..240 e-value: 3.2E-52 score: 178.2
IPR007590	Saf4/Yju2 protein	PANTHER	PTHR12111	SPLICING FACTOR YJU2	coord: 3..265

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG20g06890.1	Cp4.1LG20g06890.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000349	generation of catalytic spliceosome for first transesterification step
cellular_component	GO:0071006	U2-type catalytic step 1 spliceosome
molecular_function	GO:0046872	metal ion binding