Cp4.1LG20g06700 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG20g06700
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Ras-related protein Rab-2A
Location	Cp4.1LG20: 4525464 .. 4529451 (+)
RNA-Seq Expression	Cp4.1LG20g06700
Synteny	Cp4.1LG20g06700

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAATGAAATGAAAGAGTTACGGAAGGGGTAATAGAGAGATCCGTTGGAGAAGCAGAGAGATGAGTGTAGAAGGGTCCGAAGATGTAAGGGGTGAACAAAGTTTGTATATTAATAGCAATTGGCGGCTCGATTTTCTCTCGCCGCCGATCTCGTTTTTCTTCTTCATTTCCAACCGGAATGTCATACGCCTACCTTTTCAAGTACATCATCATTGGTGATACTGGTACGTGTTGGTATTGATGCTTTTGTCGTTTTCGATCTGATTCCTCAATTGTGTCGCTTTGGTTATGGGTTGGTTTGTGCTTAATCTGTTTCTCTAATTTGATGATGTCAACGCTGCTCTGCTTGGTTTCCTTTTTGATTTGGGACTTGCTGTGTTTAGCTTTGAATTGGATGTTGTTTTCTGTTCGTCGTCTGATTGTGAGGTTTGAAGCTTAATTGTGCTGTATTCTCCAGGAGTTGGAAAATCATGTCTTCTTCTCCAGTTTACTGATAAGAGATTTCAGCCTGTTCATGACTTGACTATTGGTGTTGAGTTTGGTGCGAGGATGATCACCATCGACAGCAAACCAATTAAGTTGCAAATTTGGGATACGGTTAGTTATCTCTCTTTCTTTATTTCTTTCTTTTTTTGGGAGTTTCATGTTTCAAATCTTTAGATATTTAACTTTGCCACTTGTCTACTGAATTGAATGAGCTCTGTTCTGGTTTATGGATAGTATTTTGCCTTTTCTTGGATCCATTTCAAGGAAAATAATCTGCAATTATACTAGAGACAAGCGGGTGATCTGCTGCTATAAGCTTAATCTTAGTTCGAGTAAAAGGCGAAAACAATAACTTATAGAACCGGGAAGCCTCCGTTCATGCTTACTATATATAGTCTATACTATTCTATACTATTTAGTTTATCATTGTAACAGGACTTTGAATCTGAAAAGTTATCTATAAGTTATGCAACACTTACATATGCTCTTAGCTCAAGTGCTCTGCTTAAACTTAGAGAGCATACACATAACATCGTACACTTATTCTATTGCTTAATGATCGTTATTCAAAATTGCTATCTGCTCTGCGTGTAATAATGATGATCATTATTGAATCAATGTCATGTATTGTTCATTTCTATTATACATATATAACGTAAGAATGGTACAGATGTTCGTTCCTTGTACTCTTTCGATTTAGATTTGTCCTTTTGGTTCTTATTAATTTCATCGAGTTTTTCTGAGTCTGAAGTTTTCCAAAAAAAAATTGCAGGCTGGTCAAGAATCTTTCAGGTCTATTACAAGGTCCTACTATAGAGGGGCTGCTGGTGCCTTGCTTGTTTACGATATCACCAGGTCCTTTTACCTCTTGGTTCCCTTCTAACTTAATACTACTCTTTATTAGTATAGATATTCATTGTTTAGGTTGTATGCAATTCATTCCTGATTAAATAAAGTTCAATTCCCTGAGGCTACGAGCCTATACCAAGATTGGTACAATAGCTGTTAGAAGATTTCTAAGTCTTTTGGCATCGGAGTTGTTGCCTTGTGTAGCTGTTGGGTTGCAATAGTTGCTACGTTTAACCTAGCTGGTCCAGGTTGTTAAGCTTTAGCCACTGGAGTTAGCTGGTTAGTTAGGCTTCAATTTGCTGCTTTATTAGTATAAATATTCATTGTTTTAGGTGTATGAAATTCATTCCCCTCAGCTACACCAATTTTCTAGTGAATAAGTAAGGGAGGCTTTTGAAATTCAACCCCCAAATGGGTCAATTGTATGCGGAACTATTGTTTAAAAGATATTTTAGAAACTTGCAGAGGATACTCCTATTCCTTTTGCAATTCATTATTGTTCTTTTCCTGGGGACCTATTATTCAATCAATTAAACCAGTCATATTGAAGTTGAATTATAATTCATGCTGGGAGTGAGAATTTGTAAAACCCATGATAGGCAGCAAGTCACCCAAAAGTATAGTCATGTAGAAAAAGGGAAGAAGGGGGACTGAGTGATATAAGTACGTGAGGATTGGCAGGTGTGTGCGTTATGATTATGTGACCATATAGTATGGTTAGTTATACTTTTTGTGTATGTTGAAGGCTGCTTATGGCAAAGAGGAGGCTACCTTTTTGCATTTTGCTCAATTGTAGCTCCTTCGGGCATAGTGGAGAGGAGGGGAGCTCTTGAAACTCCCTTGGCATTGCCAAAACAGTTAATAGATAATTTGAGGCCTATTGATCCCTGAGTCACCAGGAAACCTCGTACTTCATGAAAGTAAACAAGACTTGGTCAGATAGGTTATTGGTTAGTGGGACTGACCATTGTGTTAGAAGGTTGTAGATGTAATCTAGTAGAATTTTGGGAGGACAGCATAAAGTTTAAATGTGAATGCTCGAATTTTCTTGGATTAGTTGTGGTTTATTTTTGTCTTGCATAGTTGTAGGTTTTGTGAGAAGGAAATAATTTGAGCAAGACCGTAGTTGTTAAAATAATGCGGTCAGCCAGGTCTGACAGCAGCTCTAAACTGTTCCAACTTCATGATGTTTGGCGTGATTCAGCCTTCTAGTTTAACTTGATTGACTGCATAAACTGAAATGGGGCCTCATCATCATGCCCCTAAATTTCCCGAGTCAATGAGGACATCGAACTTAAGCTTACGTGGCTATCATATTTTTCAGGAGGGAGACTTTTAATCACCTTGCTAGCTGGCTTGAAGATGCAAGACAACATGCTAATGCAAACATGACAATAATGCTTATTGGTAACAAGTGTGATCTTGCACACAGAAGGGCTGTCAGCACTGAGGAAGGGGAGCAGTTCGCAAAGGAACATGGTCTAATTTTTATGGAGGCCTCTGCTAAAACTGCTCAAAATGTTGAGGAGGTGATAGAATAGTCATAAATTGCCTTCCAAAAAGTTCAAAATTGGACACTGTTCATCTCTAAGCTAAGAACATGACATAAAGATACAATATTGATCTTTTGATATATATTGTAAACAGTTCTCCGTCTCACAATTTTCATGATGATCAATAATTTTTACAGGCATTCATACAAACTGCTGCAACAATATATATAAGAAGATCCAGGATGGAGTGTTTGATGTATCTAATGAGGTATGGAGCTTGCTTTTTAACTTGCTGCTAAATGTGTACGGAAATGTTTTAGTTTGACCATGGCATTTTCTCTTGCGTCATGGTGATCAAAGTGCATCTGATTAGATTGGGGGTCTTGAATTTACTTTTGACTGTGCTACTTGAAGTGGTGTTTCACCGTTAGTCAAAAGTTATTTAGCTGCTTGAATTGGACAGTGTTTGGCCAGTGTTTGGCCAGTGGCGTTTAGCGACTGCCATAAGTGACAGAATTTAGATTCGAGTCTCTTAGAATTTTGTTTTTACAACGGATGAATAGCGATGAGAATGAATGATGCAAGTGATGATATGTTCCATCTTATGTGCAGTCATATGGGATAAAGGTTGGATATGGTGGAATCCCAGGGCCATCAGGAAGCAGAGATGGTACTACAGCTCAATCTGGTGGTTGTTGCGGTTAAATCTTGCTGCTCAAAAACTAGTACAAATTTCCACGTTCTCTTTAAATTCCTTTGTTAATTATGAGTGTCAGAAAACGCCCCCTCCCCCTCAAAAAAGAACAAAAAAGGGCACCATAATAGGTTATCAGGTGTTCGTATAATGGCCCCAAGGGGTGGTGGCTCCGATGGCAAGGGCTTGGGGTCTCTGGCTGGCTATACCATCTTAGAGATCCAAAACTCAAACCTTCGGGTGAGTTTAATACCAAAAACCCTTGATGTCGCCCGGGTTCTGGCCTTGGGCGGGCATCGGTGCCCTTGGGTATAGAGGAACGAAGTTCTAACTCCCAGTTATCCATAAAGAAGTATTTGTGTAATCATTAGACGTGTTGTGTTTTTGTTAATTATGTCTTGATCATATTTGATTGTAAAGGTAAACTCACATATCAATGCATGTCATTTGTGGCAAAATTGCGTCCT

mRNA sequence

CAATGAAATGAAAGAGTTACGGAAGGGGTAATAGAGAGATCCGTTGGAGAAGCAGAGAGATGAGTGTAGAAGGGTCCGAAGATGTAAGGGGTGAACAAAGTTTGTATATTAATAGCAATTGGCGGCTCGATTTTCTCTCGCCGCCGATCTCGTTTTTCTTCTTCATTTCCAACCGGAATGTCATACGCCTACCTTTTCAAGTACATCATCATTGGTGATACTGGAGTTGGAAAATCATGTCTTCTTCTCCAGTTTACTGATAAGAGATTTCAGCCTGTTCATGACTTGACTATTGGTGTTGAGTTTGGTGCGAGGATGATCACCATCGACAGCAAACCAATTAAGTTGCAAATTTGGGATACGGCTGGTCAAGAATCTTTCAGGTCTATTACAAGGTCCTACTATAGAGGGGCTGCTGGTGCCTTGCTTGTTTACGATATCACCAGCTGTTGGGTTGCAATAGTTGCTACGTTTAACCTAGCTGGTCCAGGCTGCTTATGGCAAAGAGGAGGCTACCTTTTTGCATTTTGCTCAATTGTAGCTCCTTCGGGCATAGTGGAGAGGAGGGGAGCTCTTGAAACTCCCTTGGCATTGCCAAAACAGAGGGAGACTTTTAATCACCTTGCTAGCTGGCTTGAAGATGCAAGACAACATGCTAATGCAAACATGACAATAATGCTTATTGGTAACAAGTGTGATCTTGCACACAGAAGGGCTGTCAGCACTGAGGAAGGGGAGCAGTTCGCAAAGGAACATGGTCTAATTTTTATGGAGGCCTCTGCTAAAACTGCTCAAAATGTTGAGGAGGCATTCATACAAACTGCTGCAACAATATATATAAGAAGATCCAGGATGGAGTGTTTGATGTATCTAATGAGATTGGGGGTCTTGAATTTACTTTTGACTGTGCTACTTGAAGTGTCATATGGGATAAAGGTTGGATATGGTGGAATCCCAGGGCCATCAGGAAGCAGAGATGGTACTACAGCTCAATCTGGTGGTTGTTGCGGTTAAATCTTGCTGCTCAAAAACTAGTACAAATTTCCACGTTCTCTTTAAATTCCTTTGTTAATTATGAGTGTCAGAAAACGCCCCCTCCCCCTCAAAAAAGAACAAAAAAGGGCACCATAATAGGTTATCAGGTGTTCGTATAATGGCCCCAAGGGGTGGTGGCTCCGATGGCAAGGGCTTGGGGTCTCTGGCTGGCTATACCATCTTAGAGATCCAAAACTCAAACCTTCGGGTGAGTTTAATACCAAAAACCCTTGATGTCGCCCGGGTTCTGGCCTTGGGCGGGCATCGGTGCCCTTGGGTATAGAGGAACGAAGTTCTAACTCCCAGTTATCCATAAAGAAGTATTTGTGTAATCATTAGACGTGTTGTGTTTTTGTTAATTATGTCTTGATCATATTTGATTGTAAAGGTAAACTCACATATCAATGCATGTCATTTGTGGCAAAATTGCGTCCT

Coding sequence (CDS)

ATGTCATACGCCTACCTTTTCAAGTACATCATCATTGGTGATACTGGAGTTGGAAAATCATGTCTTCTTCTCCAGTTTACTGATAAGAGATTTCAGCCTGTTCATGACTTGACTATTGGTGTTGAGTTTGGTGCGAGGATGATCACCATCGACAGCAAACCAATTAAGTTGCAAATTTGGGATACGGCTGGTCAAGAATCTTTCAGGTCTATTACAAGGTCCTACTATAGAGGGGCTGCTGGTGCCTTGCTTGTTTACGATATCACCAGCTGTTGGGTTGCAATAGTTGCTACGTTTAACCTAGCTGGTCCAGGCTGCTTATGGCAAAGAGGAGGCTACCTTTTTGCATTTTGCTCAATTGTAGCTCCTTCGGGCATAGTGGAGAGGAGGGGAGCTCTTGAAACTCCCTTGGCATTGCCAAAACAGAGGGAGACTTTTAATCACCTTGCTAGCTGGCTTGAAGATGCAAGACAACATGCTAATGCAAACATGACAATAATGCTTATTGGTAACAAGTGTGATCTTGCACACAGAAGGGCTGTCAGCACTGAGGAAGGGGAGCAGTTCGCAAAGGAACATGGTCTAATTTTTATGGAGGCCTCTGCTAAAACTGCTCAAAATGTTGAGGAGGCATTCATACAAACTGCTGCAACAATATATATAAGAAGATCCAGGATGGAGTGTTTGATGTATCTAATGAGATTGGGGGTCTTGAATTTACTTTTGACTGTGCTACTTGAAGTGTCATATGGGATAAAGGTTGGATATGGTGGAATCCCAGGGCCATCAGGAAGCAGAGATGGTACTACAGCTCAATCTGGTGGTTGTTGCGGTTAA

Protein sequence

MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDSKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITSCWVAIVATFNLAGPGCLWQRGGYLFAFCSIVAPSGIVERRGALETPLALPKQRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIQTAATIYIRRSRMECLMYLMRLGVLNLLLTVLLEVSYGIKVGYGGIPGPSGSRDGTTAQSGGCCG

Homology

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BLAST of Cp4.1LG20g06700 vs. ExPASy Swiss-Prot
Match: P92963 (Ras-related protein RABB1c OS=Arabidopsis thaliana OX=3702 GN=RABB1C PE=1 SV=1)

HSP 1 Score: 353.2 bits (905), Expect = 2.7e-96
Identity = 193/278 (69.42%), Postives = 203/278 (73.02%), Query Frame = 0


Query: 1   MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDSKPIKLQIW 60
           MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITID+KPIKLQIW
Sbjct: 1   MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIW 60

Query: 61  DTAGQESFRSITRSYYRGAAGALLVYDITSCWVAIVATFNLAGPGCLWQRGGYLFAFCSI 120
           DTAGQESFRSITRSYYRGAAGALLVYDIT                               
Sbjct: 61  DTAGQESFRSITRSYYRGAAGALLVYDIT------------------------------- 120

Query: 121 VAPSGIVERRGALETPLALPKQRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRA 180
                                +RETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRA
Sbjct: 121 ---------------------RRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRA 180

Query: 181 VSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIQTAATIYIRRSRMECLMYLMRLGVLNL 240
           VSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFI+TAATIY +          ++ GV + 
Sbjct: 181 VSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKK----------IQDGVFD- 211

Query: 241 LLTVLLEVSYGIKVGYGGIPGPSGSRDGTTAQSGGCCG 279
               +   SYGIKVGYGGIPGPSG RDG+T+Q GGCCG
Sbjct: 241 ----VSNESYGIKVGYGGIPGPSGGRDGSTSQGGGCCG 211

[Close]

BLAST of Cp4.1LG20g06700 vs. ExPASy Swiss-Prot
Match: P49104 (Ras-related protein Rab-2-B OS=Zea mays OX=4577 GN=RAB2B PE=2 SV=1)

HSP 1 Score: 322.4 bits (825), Expect = 5.0e-87
Identity = 179/277 (64.62%), Postives = 193/277 (69.68%), Query Frame = 0


Query: 1   MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDSKPIKLQIW 60
           MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITID+KPIKLQIW
Sbjct: 1   MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIW 60

Query: 61  DTAGQESFRSITRSYYRGAAGALLVYDITSCWVAIVATFNLAGPGCLWQRGGYLFAFCSI 120
           DTAGQESFRSITRSYYRGAAGALLVYDIT                               
Sbjct: 61  DTAGQESFRSITRSYYRGAAGALLVYDIT------------------------------- 120

Query: 121 VAPSGIVERRGALETPLALPKQRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRA 180
                                +RETFNHLASWLEDARQHANANMTIML+GNKCDL+HRRA
Sbjct: 121 ---------------------RRETFNHLASWLEDARQHANANMTIMLVGNKCDLSHRRA 180

Query: 181 VSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIQTAATIYIRRSRMECLMYLMRLGVLNL 240
           VS EEGEQFAKEHGLIFMEASAKTAQNVEEAF++TA  IY +          ++ GV + 
Sbjct: 181 VSYEEGEQFAKEHGLIFMEASAKTAQNVEEAFVKTAGAIYKK----------IQDGVFD- 209

Query: 241 LLTVLLEVSYGIKVGYGGIPGPSGSRDGTTAQSGGCC 278
               +   SYGIKVGY  IPG SG    +++Q GGCC
Sbjct: 241 ----VSNESYGIKVGY-AIPGQSGGAGSSSSQGGGCC 209

[Close]

BLAST of Cp4.1LG20g06700 vs. ExPASy Swiss-Prot
Match: P49103 (Ras-related protein Rab-2-A OS=Zea mays OX=4577 GN=RAB2A PE=2 SV=2)

HSP 1 Score: 318.9 bits (816), Expect = 5.6e-86
Identity = 179/277 (64.62%), Postives = 194/277 (70.04%), Query Frame = 0


Query: 1   MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDSKPIKLQIW 60
           MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITID+KPIKLQIW
Sbjct: 1   MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIW 60

Query: 61  DTAGQESFRSITRSYYRGAAGALLVYDITSCWVAIVATFNLAGPGCLWQRGGYLFAFCSI 120
           DTAGQESFRSITRSYYRGAAGALLVYDIT                               
Sbjct: 61  DTAGQESFRSITRSYYRGAAGALLVYDIT------------------------------- 120

Query: 121 VAPSGIVERRGALETPLALPKQRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRA 180
                                +RETFNHLASWLEDARQHANANMTIML+GNKCDL+HRRA
Sbjct: 121 ---------------------RRETFNHLASWLEDARQHANANMTIMLVGNKCDLSHRRA 180

Query: 181 VSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIQTAATIYIRRSRMECLMYLMRLGVLNL 240
           VS EEGEQFAKEHGLIFMEASAKTAQNVEEAF++TA  IY +          ++ GV + 
Sbjct: 181 VSYEEGEQFAKEHGLIFMEASAKTAQNVEEAFVKTAGAIYKK----------IQDGVFD- 208

Query: 241 LLTVLLEVSYGIKVGYGGIPGPSGSRDGTTAQSGGCC 278
               +   SYGIKVGY  +PG SG   G+++Q GGCC
Sbjct: 241 ----VSNESYGIKVGY-VVPGQSGGA-GSSSQGGGCC 208

[Close]

BLAST of Cp4.1LG20g06700 vs. ExPASy Swiss-Prot
Match: Q38922 (Ras-related protein RABB1b OS=Arabidopsis thaliana OX=3702 GN=RABB1B PE=2 SV=1)

HSP 1 Score: 314.7 bits (805), Expect = 1.0e-84
Identity = 172/278 (61.87%), Postives = 191/278 (68.71%), Query Frame = 0


Query: 1   MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDSKPIKLQIW 60
           MSY YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARM+T+D +PIKLQIW
Sbjct: 1   MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTVDGRPIKLQIW 60

Query: 61  DTAGQESFRSITRSYYRGAAGALLVYDITSCWVAIVATFNLAGPGCLWQRGGYLFAFCSI 120
           DTAGQESFRSITRSYYRGAAGALLVYDIT                               
Sbjct: 61  DTAGQESFRSITRSYYRGAAGALLVYDIT------------------------------- 120

Query: 121 VAPSGIVERRGALETPLALPKQRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRA 180
                                +RETFNHLASWLEDARQHAN NM+IMLIGNKCDLAH+RA
Sbjct: 121 ---------------------RRETFNHLASWLEDARQHANPNMSIMLIGNKCDLAHKRA 180

Query: 181 VSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIQTAATIYIRRSRMECLMYLMRLGVLNL 240
           VS EEG+QFAKEHGL+F+EASA+TAQNVEEAFI+TAA I          +  ++ GV + 
Sbjct: 181 VSKEEGQQFAKEHGLLFLEASARTAQNVEEAFIETAAKI----------LQNIQDGVFD- 211

Query: 241 LLTVLLEVSYGIKVGYGGIPGPSGSRDGTTAQSGGCCG 279
               +   S GIK+GYG   G +G RDGT +Q GGCCG
Sbjct: 241 ----VSNESSGIKIGYGRTQGAAGGRDGTISQGGGCCG 211

[Close]

BLAST of Cp4.1LG20g06700 vs. ExPASy Swiss-Prot
Match: P36863 (GTP-binding protein yptV4 OS=Volvox carteri OX=3067 GN=YPTV4 PE=3 SV=1)

HSP 1 Score: 301.6 bits (771), Expect = 9.2e-81
Identity = 172/280 (61.43%), Postives = 185/280 (66.07%), Query Frame = 0


Query: 1   MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDSKPIKLQIW 60
           MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMI ID K IKLQIW
Sbjct: 1   MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMINIDGKQIKLQIW 60

Query: 61  DTAGQESFRSITRSYYRGAAGALLVYDITSCWVAIVATFNLAGPGCLWQRGGYLFAFCSI 120
           DTAGQESFRSITRSYYRGAAGALLVYDIT                               
Sbjct: 61  DTAGQESFRSITRSYYRGAAGALLVYDIT------------------------------- 120

Query: 121 VAPSGIVERRGALETPLALPKQRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRA 180
                                +RETFNHLASWLEDARQHAN NMTIMLIGNKCDL HRRA
Sbjct: 121 ---------------------RRETFNHLASWLEDARQHANPNMTIMLIGNKCDLTHRRA 180

Query: 181 VSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIQTAATIYIRRSRMECLMYLMRLGVLNL 240
           V+TEEGEQFAKEHGLIF+E SA+TA NVEEAFI TA  IY +          ++ GV + 
Sbjct: 181 VTTEEGEQFAKEHGLIFLETSARTAHNVEEAFINTAKEIYKK----------IQDGVFD- 213

Query: 241 LLTVLLEVSYGIKVGYG-GIPGPSGSR--DGTTAQSGGCC 278
               +   SYGIKVGYG G  GP  ++  +G   +S  CC
Sbjct: 241 ----VSNESYGIKVGYGAGNAGPQAAKPGEGDARKSSSCC 213

[Close]

BLAST of Cp4.1LG20g06700 vs. NCBI nr
Match: KAB5551451.1 (hypothetical protein DKX38_008762 [Salix brachista])

HSP 1 Score: 369 bits (948), Expect = 7.50e-126
Identity = 201/290 (69.31%), Postives = 217/290 (74.83%), Query Frame = 0


Query: 1   MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDSKPIKLQIW 60
           MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITID+KPIKLQIW
Sbjct: 9   MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIW 68

Query: 61  DTAGQESFRSITRSYYRGAAGALLVYDITSCWVAIVATFNLAGPGCLWQRGGYLFAFCSI 120
           DTAGQESFRSITRSYYRGAAGALLVYDIT  W          GP   W+          +
Sbjct: 69  DTAGQESFRSITRSYYRGAAGALLVYDITRFW----KLKECCGPDQYWEVSDTEPVLLFL 128

Query: 121 VAPSGIVERR-------------GALETPLALPKQRETFNHLASWLEDARQHANANMTIM 180
           +  + + ER               +L T   +  QRETFNHLASWLEDARQHANANMTIM
Sbjct: 129 IVHASLSERLCLQSSPPPSLKSWASLVTSSDVISQRETFNHLASWLEDARQHANANMTIM 188

Query: 181 LIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIQTAATIYIRRSRME 240
           LIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFI+TAATIY +     
Sbjct: 189 LIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKK----- 248

Query: 241 CLMYLMRLGVLNLLLTVLLEVSYGIKVGYGGIPGPSGSRDGTTAQSGGCC 277
                ++ GV ++        SYGIKVGYGGIPGPSG RDG +AQ+GGCC
Sbjct: 249 -----IQDGVFDVS-----NESYGIKVGYGGIPGPSGGRDGGSAQAGGCC 279

[Close]

BLAST of Cp4.1LG20g06700 vs. NCBI nr
Match: XP_023520190.1 (LOW QUALITY PROTEIN: ras-related protein RABB1c-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 361 bits (926), Expect = 1.47e-123
Identity = 199/278 (71.58%), Postives = 205/278 (73.74%), Query Frame = 0


Query: 1   MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDSKPIKLQIW 60
           MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDSKPIKLQIW
Sbjct: 1   MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDSKPIKLQIW 60

Query: 61  DTAGQESFRSITRSYYRGAAGALLVYDITSCWVAIVATFNLAGPGCLWQRGGYLFAFCSI 120
           DTAGQESFRSITRSYYRGAAGALLVYDIT                               
Sbjct: 61  DTAGQESFRSITRSYYRGAAGALLVYDIT------------------------------- 120

Query: 121 VAPSGIVERRGALETPLALPKQRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRA 180
                                +RETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRA
Sbjct: 121 ---------------------RRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRA 180

Query: 181 VSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIQTAATIYIRRSRMECLMYLMRLGVLNL 240
           VSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIQTAATIY +          ++ GV ++
Sbjct: 181 VSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIQTAATIYKK----------IQDGVFDV 211

Query: 241 LLTVLLEVSYGIKVGYGGIPGPSGSRDGTTAQSGGCCG 278
                   SYGIKVGYGGIPGPSGSRDGTTAQSGGCCG
Sbjct: 241 S-----NESYGIKVGYGGIPGPSGSRDGTTAQSGGCCG 211

[Close]

BLAST of Cp4.1LG20g06700 vs. NCBI nr
Match: KAG7019338.1 (Ras-related protein RABB1c, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 359 bits (922), Expect = 5.97e-123
Identity = 198/278 (71.22%), Postives = 204/278 (73.38%), Query Frame = 0


Query: 1   MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDSKPIKLQIW 60
           MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDSKPIKLQIW
Sbjct: 1   MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDSKPIKLQIW 60

Query: 61  DTAGQESFRSITRSYYRGAAGALLVYDITSCWVAIVATFNLAGPGCLWQRGGYLFAFCSI 120
           DTAGQESFRSITRSYYRGAAGALLVYDIT                               
Sbjct: 61  DTAGQESFRSITRSYYRGAAGALLVYDIT------------------------------- 120

Query: 121 VAPSGIVERRGALETPLALPKQRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRA 180
                                +RETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRA
Sbjct: 121 ---------------------RRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRA 180

Query: 181 VSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIQTAATIYIRRSRMECLMYLMRLGVLNL 240
           VSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIQTAATIY +          ++ GV ++
Sbjct: 181 VSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIQTAATIYKK----------IQDGVFDV 211

Query: 241 LLTVLLEVSYGIKVGYGGIPGPSGSRDGTTAQSGGCCG 278
                   SYGIKVGYGGIPGPSG RDGTTAQSGGCCG
Sbjct: 241 S-----NESYGIKVGYGGIPGPSGGRDGTTAQSGGCCG 211

[Close]

BLAST of Cp4.1LG20g06700 vs. NCBI nr
Match: XP_022927533.1 (ras-related protein RABB1c-like [Cucurbita moschata] >KAG6583677.1 Ras-related protein RABB1c, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 359 bits (922), Expect = 2.44e-122
Identity = 198/278 (71.22%), Postives = 204/278 (73.38%), Query Frame = 0


Query: 1   MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDSKPIKLQIW 60
           MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDSKPIKLQIW
Sbjct: 41  MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDSKPIKLQIW 100

Query: 61  DTAGQESFRSITRSYYRGAAGALLVYDITSCWVAIVATFNLAGPGCLWQRGGYLFAFCSI 120
           DTAGQESFRSITRSYYRGAAGALLVYDIT                               
Sbjct: 101 DTAGQESFRSITRSYYRGAAGALLVYDIT------------------------------- 160

Query: 121 VAPSGIVERRGALETPLALPKQRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRA 180
                                +RETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRA
Sbjct: 161 ---------------------RRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRA 220

Query: 181 VSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIQTAATIYIRRSRMECLMYLMRLGVLNL 240
           VSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIQTAATIY +          ++ GV ++
Sbjct: 221 VSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIQTAATIYKK----------IQDGVFDV 251

Query: 241 LLTVLLEVSYGIKVGYGGIPGPSGSRDGTTAQSGGCCG 278
                   SYGIKVGYGGIPGPSG RDGTTAQSGGCCG
Sbjct: 281 S-----NESYGIKVGYGGIPGPSGGRDGTTAQSGGCCG 251

[Close]

BLAST of Cp4.1LG20g06700 vs. NCBI nr
Match: XP_022973163.1 (ras-related protein RABB1c-like [Cucurbita maxima])

HSP 1 Score: 358 bits (919), Expect = 6.75e-122
Identity = 198/278 (71.22%), Postives = 204/278 (73.38%), Query Frame = 0


Query: 1   MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDSKPIKLQIW 60
           MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITI SKPIKLQIW
Sbjct: 40  MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIHSKPIKLQIW 99

Query: 61  DTAGQESFRSITRSYYRGAAGALLVYDITSCWVAIVATFNLAGPGCLWQRGGYLFAFCSI 120
           DTAGQESFRSITRSYYRGAAGALLVYDIT                               
Sbjct: 100 DTAGQESFRSITRSYYRGAAGALLVYDIT------------------------------- 159

Query: 121 VAPSGIVERRGALETPLALPKQRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRA 180
                                +RETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRA
Sbjct: 160 ---------------------RRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRA 219

Query: 181 VSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIQTAATIYIRRSRMECLMYLMRLGVLNL 240
           VSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIQTAATIY +          ++ GV ++
Sbjct: 220 VSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIQTAATIYKK----------IQDGVFDV 250

Query: 241 LLTVLLEVSYGIKVGYGGIPGPSGSRDGTTAQSGGCCG 278
                   SYGIKVGYGGIPGPSGSRDGTTAQSGGCCG
Sbjct: 280 S-----NESYGIKVGYGGIPGPSGSRDGTTAQSGGCCG 250

[Close]

BLAST of Cp4.1LG20g06700 vs. ExPASy TrEMBL
Match: A0A5N5MB57 (Uncharacterized protein OS=Salix brachista OX=2182728 GN=DKX38_008762 PE=4 SV=1)

HSP 1 Score: 369 bits (948), Expect = 3.63e-126
Identity = 201/290 (69.31%), Postives = 217/290 (74.83%), Query Frame = 0


Query: 1   MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDSKPIKLQIW 60
           MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITID+KPIKLQIW
Sbjct: 9   MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIW 68

Query: 61  DTAGQESFRSITRSYYRGAAGALLVYDITSCWVAIVATFNLAGPGCLWQRGGYLFAFCSI 120
           DTAGQESFRSITRSYYRGAAGALLVYDIT  W          GP   W+          +
Sbjct: 69  DTAGQESFRSITRSYYRGAAGALLVYDITRFW----KLKECCGPDQYWEVSDTEPVLLFL 128

Query: 121 VAPSGIVERR-------------GALETPLALPKQRETFNHLASWLEDARQHANANMTIM 180
           +  + + ER               +L T   +  QRETFNHLASWLEDARQHANANMTIM
Sbjct: 129 IVHASLSERLCLQSSPPPSLKSWASLVTSSDVISQRETFNHLASWLEDARQHANANMTIM 188

Query: 181 LIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIQTAATIYIRRSRME 240
           LIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFI+TAATIY +     
Sbjct: 189 LIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKK----- 248

Query: 241 CLMYLMRLGVLNLLLTVLLEVSYGIKVGYGGIPGPSGSRDGTTAQSGGCC 277
                ++ GV ++        SYGIKVGYGGIPGPSG RDG +AQ+GGCC
Sbjct: 249 -----IQDGVFDVS-----NESYGIKVGYGGIPGPSGGRDGGSAQAGGCC 279

[Close]

BLAST of Cp4.1LG20g06700 vs. ExPASy TrEMBL
Match: A0A6J1EL97 (ras-related protein RABB1c-like OS=Cucurbita moschata OX=3662 GN=LOC111434331 PE=4 SV=1)

HSP 1 Score: 359 bits (922), Expect = 1.18e-122
Identity = 198/278 (71.22%), Postives = 204/278 (73.38%), Query Frame = 0


Query: 1   MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDSKPIKLQIW 60
           MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDSKPIKLQIW
Sbjct: 41  MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDSKPIKLQIW 100

Query: 61  DTAGQESFRSITRSYYRGAAGALLVYDITSCWVAIVATFNLAGPGCLWQRGGYLFAFCSI 120
           DTAGQESFRSITRSYYRGAAGALLVYDIT                               
Sbjct: 101 DTAGQESFRSITRSYYRGAAGALLVYDIT------------------------------- 160

Query: 121 VAPSGIVERRGALETPLALPKQRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRA 180
                                +RETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRA
Sbjct: 161 ---------------------RRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRA 220

Query: 181 VSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIQTAATIYIRRSRMECLMYLMRLGVLNL 240
           VSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIQTAATIY +          ++ GV ++
Sbjct: 221 VSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIQTAATIYKK----------IQDGVFDV 251

Query: 241 LLTVLLEVSYGIKVGYGGIPGPSGSRDGTTAQSGGCCG 278
                   SYGIKVGYGGIPGPSG RDGTTAQSGGCCG
Sbjct: 281 S-----NESYGIKVGYGGIPGPSGGRDGTTAQSGGCCG 251

[Close]

BLAST of Cp4.1LG20g06700 vs. ExPASy TrEMBL
Match: A0A6J1IC90 (ras-related protein RABB1c-like OS=Cucurbita maxima OX=3661 GN=LOC111471671 PE=4 SV=1)

HSP 1 Score: 358 bits (919), Expect = 3.27e-122
Identity = 198/278 (71.22%), Postives = 204/278 (73.38%), Query Frame = 0


Query: 1   MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDSKPIKLQIW 60
           MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITI SKPIKLQIW
Sbjct: 40  MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIHSKPIKLQIW 99

Query: 61  DTAGQESFRSITRSYYRGAAGALLVYDITSCWVAIVATFNLAGPGCLWQRGGYLFAFCSI 120
           DTAGQESFRSITRSYYRGAAGALLVYDIT                               
Sbjct: 100 DTAGQESFRSITRSYYRGAAGALLVYDIT------------------------------- 159

Query: 121 VAPSGIVERRGALETPLALPKQRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRA 180
                                +RETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRA
Sbjct: 160 ---------------------RRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRA 219

Query: 181 VSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIQTAATIYIRRSRMECLMYLMRLGVLNL 240
           VSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIQTAATIY +          ++ GV ++
Sbjct: 220 VSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIQTAATIYKK----------IQDGVFDV 250

Query: 241 LLTVLLEVSYGIKVGYGGIPGPSGSRDGTTAQSGGCCG 278
                   SYGIKVGYGGIPGPSGSRDGTTAQSGGCCG
Sbjct: 280 S-----NESYGIKVGYGGIPGPSGSRDGTTAQSGGCCG 250

[Close]

BLAST of Cp4.1LG20g06700 vs. ExPASy TrEMBL
Match: A0A6J1HR35 (ras-related protein RABB1c OS=Cucurbita maxima OX=3661 GN=LOC111466601 PE=4 SV=1)

HSP 1 Score: 354 bits (909), Expect = 2.75e-121
Identity = 195/277 (70.40%), Postives = 200/277 (72.20%), Query Frame = 0


Query: 1   MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDSKPIKLQIW 60
           MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDSKPIKLQIW
Sbjct: 1   MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDSKPIKLQIW 60

Query: 61  DTAGQESFRSITRSYYRGAAGALLVYDITSCWVAIVATFNLAGPGCLWQRGGYLFAFCSI 120
           DTAGQESFRSITRSYYRGAAGALLVYDIT                               
Sbjct: 61  DTAGQESFRSITRSYYRGAAGALLVYDIT------------------------------- 120

Query: 121 VAPSGIVERRGALETPLALPKQRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRA 180
                                +RETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRA
Sbjct: 121 ---------------------RRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRA 180

Query: 181 VSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIQTAATIYIRRSRMECLMYLMRLGVLNL 240
           VSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFI+TAATIY +             GV ++
Sbjct: 181 VSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQE----------GVFDV 210

Query: 241 LLTVLLEVSYGIKVGYGGIPGPSGSRDGTTAQSGGCC 277
                   SYGIKVGYGGIPGPSG RDGT AQSGGCC
Sbjct: 241 S-----NESYGIKVGYGGIPGPSGGRDGTIAQSGGCC 210

[Close]

BLAST of Cp4.1LG20g06700 vs. ExPASy TrEMBL
Match: A0A6J1CNK8 (ras-related protein RABB1c OS=Momordica charantia OX=3673 GN=LOC111012746 PE=4 SV=1)

HSP 1 Score: 353 bits (907), Expect = 5.55e-121
Identity = 194/277 (70.04%), Postives = 203/277 (73.29%), Query Frame = 0


Query: 1   MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDSKPIKLQIW 60
           MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDSKPIKLQIW
Sbjct: 1   MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDSKPIKLQIW 60

Query: 61  DTAGQESFRSITRSYYRGAAGALLVYDITSCWVAIVATFNLAGPGCLWQRGGYLFAFCSI 120
           DTAGQESFRSITRSYYRGAAGALLVYDIT                               
Sbjct: 61  DTAGQESFRSITRSYYRGAAGALLVYDIT------------------------------- 120

Query: 121 VAPSGIVERRGALETPLALPKQRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRA 180
                                +RETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRA
Sbjct: 121 ---------------------RRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRA 180

Query: 181 VSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIQTAATIYIRRSRMECLMYLMRLGVLNL 240
           VSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFI+TAATIY +          ++ GV ++
Sbjct: 181 VSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKK----------IQDGVFDV 210

Query: 241 LLTVLLEVSYGIKVGYGGIPGPSGSRDGTTAQSGGCC 277
                   SYGIKVGYGGIPGPSG RDGT+AQ+GGCC
Sbjct: 241 S-----NESYGIKVGYGGIPGPSGGRDGTSAQAGGCC 210

[Close]

BLAST of Cp4.1LG20g06700 vs. TAIR 10
Match: AT4G17170.1 (RAB GTPase homolog B1C )

HSP 1 Score: 353.2 bits (905), Expect = 1.9e-97
Identity = 193/278 (69.42%), Postives = 203/278 (73.02%), Query Frame = 0


Query: 1   MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDSKPIKLQIW 60
           MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITID+KPIKLQIW
Sbjct: 1   MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIW 60

Query: 61  DTAGQESFRSITRSYYRGAAGALLVYDITSCWVAIVATFNLAGPGCLWQRGGYLFAFCSI 120
           DTAGQESFRSITRSYYRGAAGALLVYDIT                               
Sbjct: 61  DTAGQESFRSITRSYYRGAAGALLVYDIT------------------------------- 120

Query: 121 VAPSGIVERRGALETPLALPKQRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRA 180
                                +RETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRA
Sbjct: 121 ---------------------RRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRA 180

Query: 181 VSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIQTAATIYIRRSRMECLMYLMRLGVLNL 240
           VSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFI+TAATIY +          ++ GV + 
Sbjct: 181 VSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKK----------IQDGVFD- 211

Query: 241 LLTVLLEVSYGIKVGYGGIPGPSGSRDGTTAQSGGCCG 279
               +   SYGIKVGYGGIPGPSG RDG+T+Q GGCCG
Sbjct: 241 ----VSNESYGIKVGYGGIPGPSGGRDGSTSQGGGCCG 211

[Close]

BLAST of Cp4.1LG20g06700 vs. TAIR 10
Match: AT4G35860.1 (GTP-binding 2 )

HSP 1 Score: 314.7 bits (805), Expect = 7.5e-86
Identity = 172/278 (61.87%), Postives = 191/278 (68.71%), Query Frame = 0


Query: 1   MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDSKPIKLQIW 60
           MSY YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARM+T+D +PIKLQIW
Sbjct: 1   MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTVDGRPIKLQIW 60

Query: 61  DTAGQESFRSITRSYYRGAAGALLVYDITSCWVAIVATFNLAGPGCLWQRGGYLFAFCSI 120
           DTAGQESFRSITRSYYRGAAGALLVYDIT                               
Sbjct: 61  DTAGQESFRSITRSYYRGAAGALLVYDIT------------------------------- 120

Query: 121 VAPSGIVERRGALETPLALPKQRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRA 180
                                +RETFNHLASWLEDARQHAN NM+IMLIGNKCDLAH+RA
Sbjct: 121 ---------------------RRETFNHLASWLEDARQHANPNMSIMLIGNKCDLAHKRA 180

Query: 181 VSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIQTAATIYIRRSRMECLMYLMRLGVLNL 240
           VS EEG+QFAKEHGL+F+EASA+TAQNVEEAFI+TAA I          +  ++ GV + 
Sbjct: 181 VSKEEGQQFAKEHGLLFLEASARTAQNVEEAFIETAAKI----------LQNIQDGVFD- 211

Query: 241 LLTVLLEVSYGIKVGYGGIPGPSGSRDGTTAQSGGCCG 279
               +   S GIK+GYG   G +G RDGT +Q GGCCG
Sbjct: 241 ----VSNESSGIKIGYGRTQGAAGGRDGTISQGGGCCG 211

[Close]

BLAST of Cp4.1LG20g06700 vs. TAIR 10
Match: AT4G17160.1 (RAB GTPase homolog B1A )

HSP 1 Score: 280.4 bits (716), Expect = 1.6e-75
Identity = 161/280 (57.50%), Postives = 181/280 (64.64%), Query Frame = 0


Query: 1   MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDSKPIKLQIW 60
           MSYAY FKYIIIGDTGVGKSCLLL+FTDKRFQ VHDLTIGVEFGA+ ITID+KPIKLQIW
Sbjct: 1   MSYAYRFKYIIIGDTGVGKSCLLLKFTDKRFQAVHDLTIGVEFGAKTITIDNKPIKLQIW 60

Query: 61  DTAGQESFRSITRSYYRGAAGALLVYDITSCWVAIVATFNLAGPGCLWQRGGYLFAFCSI 120
           DTAGQESFRS+TRSYYRG AG LLVYDIT                               
Sbjct: 61  DTAGQESFRSVTRSYYRGRAGTLLVYDIT------------------------------- 120

Query: 121 VAPSGIVERRGALETPLALPKQRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRA 180
                                +RETFNHLASWLE+ARQHA+ NMT MLIGNKCDL  +R 
Sbjct: 121 ---------------------RRETFNHLASWLEEARQHASENMTTMLIGNKCDLEDKRT 180

Query: 181 VSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIQTAATIYIRRSRMECLMYLMRLGVLNL 240
           VSTEEGEQFA+EHGLIFMEASAKTA NVEEAF++TAATIY R          ++ GV++ 
Sbjct: 181 VSTEEGEQFAREHGLIFMEASAKTAHNVEEAFVETAATIYKR----------IQDGVVD- 205

Query: 241 LLTVLLEVSYGIKVGYGGI-PGPSGSRDGTTAQS-GGCCG 279
                       +    GI PGP G +D +++Q   GCCG
Sbjct: 241 ------------EANEPGITPGPFGGKDASSSQQRRGCCG 205

[Close]

BLAST of Cp4.1LG20g06700 vs. TAIR 10
Match: AT4G35860.2 (GTP-binding 2 )

HSP 1 Score: 221.5 bits (563), Expect = 8.6e-58
Identity = 127/232 (54.74%), Postives = 146/232 (62.93%), Query Frame = 0


Query: 47  MITIDSKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITSCWVAIVATFNLAGPGC 106
           M+T+D +PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDIT                 
Sbjct: 1   MVTVDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDIT----------------- 60

Query: 107 LWQRGGYLFAFCSIVAPSGIVERRGALETPLALPKQRETFNHLASWLEDARQHANANMTI 166
                                              +RETFNHLASWLEDARQHAN NM+I
Sbjct: 61  -----------------------------------RRETFNHLASWLEDARQHANPNMSI 120

Query: 167 MLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIQTAATIYIRRSRM 226
           MLIGNKCDLAH+RAVS EEG+QFAKEHGL+F+EASA+TAQNVEEAFI+TAA I       
Sbjct: 121 MLIGNKCDLAHKRAVSKEEGQQFAKEHGLLFLEASARTAQNVEEAFIETAAKI------- 165

Query: 227 ECLMYLMRLGVLNLLLTVLLEVSYGIKVGYGGIPGPSGSRDGTTAQSGGCCG 279
              +  ++ GV +     +   S GIK+GYG   G +G RDGT +Q GGCCG
Sbjct: 181 ---LQNIQDGVFD-----VSNESSGIKIGYGRTQGAAGGRDGTISQGGGCCG 165

[Close]

BLAST of Cp4.1LG20g06700 vs. TAIR 10
Match: AT3G12160.1 (RAB GTPase homolog A4D )

HSP 1 Score: 164.9 bits (416), Expect = 9.5e-41
Identity = 88/216 (40.74%), Postives = 117/216 (54.17%), Query Frame = 0


Query: 5   YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDSKPIKLQIWDTAG 64
           Y+FK ++IGD+ VGK+ LL +F    F      TIGVEF  + + ID+K +K QIWDTAG
Sbjct: 14  YVFKVVLIGDSAVGKTQLLARFARNEFSVDSKATIGVEFQTKTLVIDNKTVKAQIWDTAG 73

Query: 65  QESFRSITRSYYRGAAGALLVYDITSCWVAIVATFNLAGPGCLWQRGGYLFAFCSIVAPS 124
           QE +R++T +YYRGA GA+LVYD+T                                   
Sbjct: 74  QERYRAVTSAYYRGAVGAMLVYDMT----------------------------------- 133

Query: 125 GIVERRGALETPLALPKQRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTE 184
                            +R++F+H+A WLE+ R HA+ N+ IMLIGNKCDL   RAV TE
Sbjct: 134 -----------------KRQSFDHMAKWLEELRGHADKNIVIMLIGNKCDLGSLRAVPTE 177

Query: 185 EGEQFAKEHGLIFMEASAKTAQNVEEAFIQTAATIY 221
           + ++FA+   L FME SA  A NVE AF+     IY
Sbjct: 194 DAQEFAQRENLFFMETSALEATNVETAFLTILTEIY 177

The following BLAST results are available for this feature:

BLAST of Cp4.1LG20g06700 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P92963	2.7e-96	69.42	Ras-related protein RABB1c OS=Arabidopsis thaliana OX=3702 GN=RABB1C PE=1 SV=1	[more]
P49104	5.0e-87	64.62	Ras-related protein Rab-2-B OS=Zea mays OX=4577 GN=RAB2B PE=2 SV=1	[more]
P49103	5.6e-86	64.62	Ras-related protein Rab-2-A OS=Zea mays OX=4577 GN=RAB2A PE=2 SV=2	[more]
Q38922	1.0e-84	61.87	Ras-related protein RABB1b OS=Arabidopsis thaliana OX=3702 GN=RABB1B PE=2 SV=1	[more]
P36863	9.2e-81	61.43	GTP-binding protein yptV4 OS=Volvox carteri OX=3067 GN=YPTV4 PE=3 SV=1	[more]

BLAST of Cp4.1LG20g06700 vs. NCBI nr


Match Name	E-value	Identity	Description
KAB5551451.1	7.50e-126	69.31	hypothetical protein DKX38_008762 [Salix brachista]	[more]
XP_023520190.1	1.47e-123	71.58	LOW QUALITY PROTEIN: ras-related protein RABB1c-like [Cucurbita pepo subsp. pepo...	[more]
KAG7019338.1	5.97e-123	71.22	Ras-related protein RABB1c, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022927533.1	2.44e-122	71.22	ras-related protein RABB1c-like [Cucurbita moschata] >KAG6583677.1 Ras-related p...	[more]
XP_022973163.1	6.75e-122	71.22	ras-related protein RABB1c-like [Cucurbita maxima]	[more]

BLAST of Cp4.1LG20g06700 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5N5MB57	3.63e-126	69.31	Uncharacterized protein OS=Salix brachista OX=2182728 GN=DKX38_008762 PE=4 SV=1	[more]
A0A6J1EL97	1.18e-122	71.22	ras-related protein RABB1c-like OS=Cucurbita moschata OX=3662 GN=LOC111434331 PE...	[more]
A0A6J1IC90	3.27e-122	71.22	ras-related protein RABB1c-like OS=Cucurbita maxima OX=3661 GN=LOC111471671 PE=4...	[more]
A0A6J1HR35	2.75e-121	70.40	ras-related protein RABB1c OS=Cucurbita maxima OX=3661 GN=LOC111466601 PE=4 SV=1	[more]
A0A6J1CNK8	5.55e-121	70.04	ras-related protein RABB1c OS=Momordica charantia OX=3673 GN=LOC111012746 PE=4 S...	[more]

BLAST of Cp4.1LG20g06700 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G17170.1	1.9e-97	69.42	RAB GTPase homolog B1C	[more]
AT4G35860.1	7.5e-86	61.87	GTP-binding 2	[more]
AT4G17160.1	1.6e-75	57.50	RAB GTPase homolog B1A	[more]
AT4G35860.2	8.6e-58	54.74	GTP-binding 2	[more]
AT3G12160.1	9.5e-41	40.74	RAB GTPase homolog A4D	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PRINTS	PR00449	RASTRNSFRMNG	coord: 30..46 score: 32.76 coord: 197..219 score: 43.88 coord: 48..70 score: 53.4 coord: 7..28 score: 51.86
None	No IPR available	SMART	SM00175	rab_sub_5	coord: 7..222 e-value: 2.4E-82 score: 289.6
None	No IPR available	SMART	SM00173	ras_sub_4	coord: 4..222 e-value: 5.4E-24 score: 95.7
None	No IPR available	PANTHER	PTHR47979	DRAB11-RELATED	coord: 1..90
None	No IPR available	PANTHER	PTHR47979:SF64	SUBFAMILY NOT NAMED	coord: 1..90 coord: 142..278
None	No IPR available	PANTHER	PTHR47979	DRAB11-RELATED	coord: 142..278
None	No IPR available	PROSITE	PS51420	RHO	coord: 1..220 score: 8.718088
None	No IPR available	PROSITE	PS51419	RAB	coord: 2..277 score: 29.262955
None	No IPR available	CDD	cd01866	Rab2	coord: 3..220 e-value: 2.04658E-121 score: 342.095
IPR001806	Small GTPase	SMART	SM00174	rho_sub_3	coord: 9..223 e-value: 4.9E-6 score: -40.5
IPR001806	Small GTPase	PFAM	PF00071	Ras	coord: 8..90 e-value: 5.8E-32 score: 110.5 coord: 142..219 e-value: 1.3E-22 score: 80.2
IPR001806	Small GTPase	PROSITE	PS51421	RAS	coord: 1..230 score: 15.664105
IPR005225	Small GTP-binding protein domain	TIGRFAM	TIGR00231	TIGR00231	coord: 7..90 e-value: 4.6E-19 score: 66.7
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	3.40.50.300		coord: 1..229 e-value: 1.8E-65 score: 222.0
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 2..232

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG20g06700.1	Cp4.1LG20g06700.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006888	endoplasmic reticulum to Golgi vesicle-mediated transport
cellular_component	GO:0005794	Golgi apparatus
cellular_component	GO:0016020	membrane
molecular_function	GO:0003924	GTPase activity
molecular_function	GO:0005525	GTP binding