Cp4.1LG20g06560 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG20g06560
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionUnknown protein
LocationCp4.1LG20: 4184282 .. 4184602 (-)
RNA-Seq ExpressionCp4.1LG20g06560
SyntenyCp4.1LG20g06560
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATTATCGTAAGCATTACCATAATCAAGGACCTTATCAATCCCATGACACTTAATACCCTCGGAACTAGAACAAACATTAGGAACAGTGACAGCAGCATTATTGACAAGAAAATGGCCTCTTCCATGGTTATGGATTCTGATCATCCTATTACGATAACCCGAAGGAACGATGGAGCCAGTGGGAAACCGAATCAAGTCACTGAATTGCAACGGCATGACAATCGAATGACTGAGGACGAACGACTCGAGACGGTCGGTCGATATGGAGATGTTCGAGAGCTGAGGGTCGAGGGGGATGAAGAAGGTGATGTCCCTTAG

mRNA sequence

ATGATTATCGTAAGCATTACCATAATCAAGGACCTTATCAATCCCATGACACTTAATACCCTCGGAACTAGAACAAACATTAGGAACAGTGACAGCAGCATTATTGACAAGAAAATGGCCTCTTCCATGGTTATGGATTCTGATCATCCTATTACGATAACCCGAAGGAACGATGGAGCCAGTGGGAAACCGAATCAAGTCACTGAATTGCAACGGCATGACAATCGAATGACTGAGGACGAACGACTCGAGACGGTCGGTCGATATGGAGATGTTCGAGAGCTGAGGGTCGAGGGGGATGAAGAAGGTGATGTCCCTTAG

Coding sequence (CDS)

ATGATTATCGTAAGCATTACCATAATCAAGGACCTTATCAATCCCATGACACTTAATACCCTCGGAACTAGAACAAACATTAGGAACAGTGACAGCAGCATTATTGACAAGAAAATGGCCTCTTCCATGGTTATGGATTCTGATCATCCTATTACGATAACCCGAAGGAACGATGGAGCCAGTGGGAAACCGAATCAAGTCACTGAATTGCAACGGCATGACAATCGAATGACTGAGGACGAACGACTCGAGACGGTCGGTCGATATGGAGATGTTCGAGAGCTGAGGGTCGAGGGGGATGAAGAAGGTGATGTCCCTTAG

Protein sequence

MIIVSITIIKDLINPMTLNTLGTRTNIRNSDSSIIDKKMASSMVMDSDHPITITRRNDGASGKPNQVTELQRHDNRMTEDERLETVGRYGDVRELRVEGDEEGDVP
Homology
[Close]
BLAST of Cp4.1LG20g06560 vs. NCBI nr
Match: KAE8637357.1 (hypothetical protein CSA_011907 [Cucumis sativus])

HSP 1 Score: 83.6 bits (205), Expect = 1.23e-17
Identity = 44/67 (65.67%), Postives = 53/67 (79.10%), Query Frame = 0 

Query: 39  MASSMVMDSDHPITITRRNDGASGKPNQVTELQRHDNRMTEDERLETVGRYGDVRELRVE 98
           MASS+VMDSDHPI +TRRN+G   K NQVTEL+RH++ M E +RLETV   GDV +L V 
Sbjct: 1   MASSIVMDSDHPIMVTRRNNGTRRKSNQVTELKRHEDHMAEHKRLETVNSDGDVGDLGVL 60

Query: 99  GDEEGDV 105
           GDE+GDV
Sbjct: 61  GDEKGDV 67

[Close]
BLAST of Cp4.1LG20g06560 vs. ExPASy TrEMBL
Match: A0A0A0LVS5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G181460 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 2.13e-18
Identity = 43/66 (65.15%), Postives = 52/66 (78.79%), Query Frame = 0 

Query: 39  MASSMVMDSDHPITITRRNDGASGKPNQVTELQRHDNRMTEDERLETVGRYGDVRELRVE 98
           MASS+VMDSDHPI +TRRN+G   K NQVTEL+RH++ M E +RLETV   GDV +L V 
Sbjct: 1   MASSIVMDSDHPIMVTRRNNGTRRKSNQVTELKRHEDHMAEHKRLETVNSDGDVGDLGVL 60

Query: 99  GDEEGD 104
           GDE+GD
Sbjct: 61  GDEKGD 66

The following BLAST results are available for this feature:
BLAST of Cp4.1LG20g06560 vs.
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG20g06560 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8637357.11.23e-1765.67hypothetical protein CSA_011907 [Cucumis sativus][more]
BLAST of Cp4.1LG20g06560 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LVS52.13e-1865.15Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G181460 PE=4 SV=1[more]
BLAST of Cp4.1LG20g06560 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG20g06560.1Cp4.1LG20g06560.1mRNA