Cp4.1LG20g04610 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG20g04610
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	nuclear envelope pore membrane protein POM 121-like
Location	Cp4.1LG20: 2622429 .. 2624688 (-)
RNA-Seq Expression	Cp4.1LG20g04610
Synteny	Cp4.1LG20g04610

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGAAAACCCACCCCAAACGACACCGTATTCCCAGGAGAGGACCTGGCGTTGCAGAGCTTGAGAAGATTTTAAAGGAGCAACAAGGCGGCGCCGACGGCGGCAACGGCGACCAAGATCAAGCCGACGTTTCATCCCTACCACCCTCTTTTTTCCAACATCGCCGCCGCCACTCTCCGAGTAATACTCCCTCCTCCTTAAACCCTCCCCGCCCTCCCCCAACCCCACCTCCTCCCCCACTTCTTCCACCACCGCTCACACGCGATTACGCTTCATGGTCAAATCTTCCCTTGTTCCCAACTCTTGATTTTATTCCCCCGGCCTTGCCAACCCCAACCCCCGCCGTCGCCGCCGTTGAAAAACCCTTGTTTCCAACAACCAGAAAATCCGACGCCCAAATCAATTTGCCTCCACATTTTTTCCCTACTTTTCAATATTCTGCCTCCTCTCACAATCTAATGGTGAGGCAACGTTAAATTTCAAAATCTTCATAAAGCTTTCATTTTTATTTTTTATTTCATGTAAATATATTCAATTTATGCAAAAAGTTCCAAACTTTTTTCAGATGAATATCATTCCAGGATCTGCCACATCGCCGGCGGCCAGATATTATCGTCAAATAGAGCACCCTTCAAGCCAAATATCAACACAATCCAACAACACATGGACCTCACCGGAGGAACAACAAAAGGCAATTACTTCTCACCTCTTTTTTTTTTTTTCTTAATATTTATTTTATTTCCAATCATAGAATTAAAAAACTCCAAGCTTATGGTTAAATTTTCTCTAAACATCTTTGTTATTAAATACATAATTTTGGCACCTATATTAGGATACAAGAGAATAATGACACTATATTGGCTAATTAACATATCAGTCTTTCTAATTTTTTTAGAAAGAAGATTTGATATGATTTGTTCAAGGCTAATTAAGAAAATGGATGAACATTTAAAATATTTAAAGTGAGAAAAAGGGAATAATATTAATAATGATAATAATAATTCACAGATGGTAAGTGCAAAGAGGGTGAGACCCTTTTTGGATGAAGGCCATAGGGATCCAAATGCTGAGACCAGAGCTCCATTTTTCACAAACATGGCCACCAAAGAGTCTTCTTCGTCGTCTTCATCGTCGTCGTCTTCTTCCATGGACATGAATCGCTCTCCATTCGATCTCGATTCAAACTCGAGGTACTCTTCTTTCTTTCCAGATCTCTTTATTATTTTAATGAAAATTTCGGTAGATTTGGTTAATAAAAGTGTTCATAGACACAGCTACAGTATTAAAAACCAAATCTTTTTACAAAATATAACGGAAGAAAGCTATTGTTTGGTTAAATCTTTAAATGTTAGTTTAGAACCCAAAAATATTTTGCAAATAATAATGTAAAATTTAGAAAAAAATATCAAAATAGATTCATATCAATAATTTATTGGTGATTTGGTTTGAATTTGACGTTGAATTTGTGTAAAGAGGTACAAAGAGGGGGTTTGGAGGGGAGTTAATGAGGTGCAGCAAAAGAAGTGAAAGGTACCAATTAGCAGGAGAAGTCAGCCATTTGATGGCATTGGGATCTTCTTCATCAGCTCCAAATGAAGTTGCAGCAGCATTCAATATCCATCACCCCCAAGTAAGAAACATCCATCCATCCATCCATCATCATCTTCATCATCATCATGTTCATCTTCATAACAAATAATTTTGACTTTCTTTTTTTGTTTAATTTTATTAAACCCACCTTGGGAAAGCTTTGAATTCCATCCATTAAACCCTAAACTTAATTAGGCAACCAAATTTCAATAAATCCAATCAATCCAACCAAAAACAAACACCCAACTCACAGCTACAAAATAATAATAAGGAAACTTTTCATTTTATTTTCTTTATACTACGACCAATTTGATGATATTTTTATGAAATTAACATGTGAAGAAATGATTTTGAAGGAAACCATGGAGGCTTCACAGTATAGAGATGGAGGAAGTGCCTCAGATTACAACAAAGTTACATTTAACTCCTCCTCCTCCTCCTTATATGAATCAAAGTTAAAGGGTAACAAAGACATTGTGATCGGCTCTGGATTTGAAGTCGAAGCCGAACCCGGAGCGGAAGGCATCGATCTAAGTTTGAAGCTGTAATTGCTGGAGAAGTAGGTTAATGTTTGTTTAGAAGAGAGATTTGGAATCTGTTTGTACCCAAAAAAAAATATGCATACATACAAATTAAGGTTTTTAAATTCAAATATTTATTTGTAGTTTT

mRNA sequence

ATGAAGAAAACCCACCCCAAACGACACCGTATTCCCAGGAGAGGACCTGGCGTTGCAGAGCTTGAGAAGATTTTAAAGGAGCAACAAGGCGGCGCCGACGGCGGCAACGGCGACCAAGATCAAGCCGACGTTTCATCCCTACCACCCTCTTTTTTCCAACATCGCCGCCGCCACTCTCCGAGTAATACTCCCTCCTCCTTAAACCCTCCCCGCCCTCCCCCAACCCCACCTCCTCCCCCACTTCTTCCACCACCGCTCACACGCGATTACGCTTCATGGTCAAATCTTCCCTTGTTCCCAACTCTTGATTTTATTCCCCCGGCCTTGCCAACCCCAACCCCCGCCGTCGCCGCCGTTGAAAAACCCTTGTTTCCAACAACCAGAAAATCCGACGCCCAAATCAATTTGCCTCCACATTTTTTCCCTACTTTTCAATATTCTGCCTCCTCTCACAATCTAATGATGGTAAGTGCAAAGAGGGTGAGACCCTTTTTGGATGAAGGCCATAGGGATCCAAATGCTGAGACCAGAGCTCCATTTTTCACAAACATGGCCACCAAAGAGTCTTCTTCGTCGTCTTCATCGTCGTCGTCTTCTTCCATGGACATGAATCGCTCTCCATTCGATCTCGATTCAAACTCGAGAGGTACAAAGAGGGGGTTTGGAGGGGAGTTAATGAGGTGCAGCAAAAGAAGTGAAAGGTACCAATTAGCAGGAGAAGTCAGCCATTTGATGGCATTGGGATCTTCTTCATCAGCTCCAAATGAAGTTGCAGCAGCATTCAATATCCATCACCCCCAAGAAACCATGGAGGCTTCACAGTATAGAGATGGAGGAAGTGCCTCAGATTACAACAAAGTTACATTTAACTCCTCCTCCTCCTCCTTATATGAATCAAAGTTAAAGGGTAACAAAGACATTGTGATCGGCTCTGGATTTGAAGTCGAAGCCGAACCCGGAGCGGAAGGCATCGATCTAAGTTTGAAGCTGTAATTGCTGGAGAAGTAGGTTAATGTTTGTTTAGAAGAGAGATTTGGAATCTGTTTGTACCCAAAAAAAAATATGCATACATACAAATTAAGGTTTTTAAATTCAAATATTTATTTGTAGTTTT

Coding sequence (CDS)

ATGAAGAAAACCCACCCCAAACGACACCGTATTCCCAGGAGAGGACCTGGCGTTGCAGAGCTTGAGAAGATTTTAAAGGAGCAACAAGGCGGCGCCGACGGCGGCAACGGCGACCAAGATCAAGCCGACGTTTCATCCCTACCACCCTCTTTTTTCCAACATCGCCGCCGCCACTCTCCGAGTAATACTCCCTCCTCCTTAAACCCTCCCCGCCCTCCCCCAACCCCACCTCCTCCCCCACTTCTTCCACCACCGCTCACACGCGATTACGCTTCATGGTCAAATCTTCCCTTGTTCCCAACTCTTGATTTTATTCCCCCGGCCTTGCCAACCCCAACCCCCGCCGTCGCCGCCGTTGAAAAACCCTTGTTTCCAACAACCAGAAAATCCGACGCCCAAATCAATTTGCCTCCACATTTTTTCCCTACTTTTCAATATTCTGCCTCCTCTCACAATCTAATGATGGTAAGTGCAAAGAGGGTGAGACCCTTTTTGGATGAAGGCCATAGGGATCCAAATGCTGAGACCAGAGCTCCATTTTTCACAAACATGGCCACCAAAGAGTCTTCTTCGTCGTCTTCATCGTCGTCGTCTTCTTCCATGGACATGAATCGCTCTCCATTCGATCTCGATTCAAACTCGAGAGGTACAAAGAGGGGGTTTGGAGGGGAGTTAATGAGGTGCAGCAAAAGAAGTGAAAGGTACCAATTAGCAGGAGAAGTCAGCCATTTGATGGCATTGGGATCTTCTTCATCAGCTCCAAATGAAGTTGCAGCAGCATTCAATATCCATCACCCCCAAGAAACCATGGAGGCTTCACAGTATAGAGATGGAGGAAGTGCCTCAGATTACAACAAAGTTACATTTAACTCCTCCTCCTCCTCCTTATATGAATCAAAGTTAAAGGGTAACAAAGACATTGTGATCGGCTCTGGATTTGAAGTCGAAGCCGAACCCGGAGCGGAAGGCATCGATCTAAGTTTGAAGCTGTAA

Protein sequence

MKKTHPKRHRIPRRGPGVAELEKILKEQQGGADGGNGDQDQADVSSLPPSFFQHRRRHSPSNTPSSLNPPRPPPTPPPPPLLPPPLTRDYASWSNLPLFPTLDFIPPALPTPTPAVAAVEKPLFPTTRKSDAQINLPPHFFPTFQYSASSHNLMMVSAKRVRPFLDEGHRDPNAETRAPFFTNMATKESSSSSSSSSSSSMDMNRSPFDLDSNSRGTKRGFGGELMRCSKRSERYQLAGEVSHLMALGSSSSAPNEVAAAFNIHHPQETMEASQYRDGGSASDYNKVTFNSSSSSLYESKLKGNKDIVIGSGFEVEAEPGAEGIDLSLKL

Homology

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BLAST of Cp4.1LG20g04610 vs. NCBI nr
Match: XP_023520013.1 (uncharacterized protein LOC111783325 [Cucurbita pepo subsp. pepo] >XP_023520014.1 uncharacterized protein LOC111783325 [Cucurbita pepo subsp. pepo] >XP_023520016.1 uncharacterized protein LOC111783325 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 614 bits (1584), Expect = 2.41e-220
Identity = 330/372 (88.71%), Postives = 330/372 (88.71%), Query Frame = 0


Query: 1   MKKTHPKRHRIPRRGPGVAELEKILKEQQGGADGGNGDQDQADVSSLPPSFFQHRRRHSP 60
           MKKTHPKRHRIPRRGPGVAELEKILKEQQGGADGGNGDQDQADVSSLPPSFFQHRRRHSP
Sbjct: 1   MKKTHPKRHRIPRRGPGVAELEKILKEQQGGADGGNGDQDQADVSSLPPSFFQHRRRHSP 60

Query: 61  SNTPSSLNPPRPPPTPPPPPLLPPPLTRDYASWSNLPLFPTLDFIPPALPTPTPAVAAVE 120
           SNTPSSLNPPRPPPTPPPPPLLPPPLTRDYASWSNLPLFPTLDFIPPALPTPTPAVAAVE
Sbjct: 61  SNTPSSLNPPRPPPTPPPPPLLPPPLTRDYASWSNLPLFPTLDFIPPALPTPTPAVAAVE 120

Query: 121 KPLFPTTRKSDAQINLPPHFFPTFQYSASSHNLMM------------------------- 180
           KPLFPTTRKSDAQINLPPHFFPTFQYSASSHNLMM                         
Sbjct: 121 KPLFPTTRKSDAQINLPPHFFPTFQYSASSHNLMMNIIPGSATSPAARYYRQIEHPSSQI 180

Query: 181 -----------------VSAKRVRPFLDEGHRDPNAETRAPFFTNMATKESSSSSSSSSS 240
                            VSAKRVRPFLDEGHRDPNAETRAPFFTNMATKESSSSSSSSSS
Sbjct: 181 STQSNNTWTSPEEQQKMVSAKRVRPFLDEGHRDPNAETRAPFFTNMATKESSSSSSSSSS 240

Query: 241 SSMDMNRSPFDLDSNSRGTKRGFGGELMRCSKRSERYQLAGEVSHLMALGSSSSAPNEVA 300
           SSMDMNRSPFDLDSNSRGTKRGFGGELMRCSKRSERYQLAGEVSHLMALGSSSSAPNEVA
Sbjct: 241 SSMDMNRSPFDLDSNSRGTKRGFGGELMRCSKRSERYQLAGEVSHLMALGSSSSAPNEVA 300

Query: 301 AAFNIHHPQETMEASQYRDGGSASDYNKVTFNSSSSSLYESKLKGNKDIVIGSGFEVEAE 330
           AAFNIHHPQETMEASQYRDGGSASDYNKVTFNSSSSSLYESKLKGNKDIVIGSGFEVEAE
Sbjct: 301 AAFNIHHPQETMEASQYRDGGSASDYNKVTFNSSSSSLYESKLKGNKDIVIGSGFEVEAE 360

[Close]

BLAST of Cp4.1LG20g04610 vs. NCBI nr
Match: KAG7019594.1 (hypothetical protein SDJN02_18557, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 592 bits (1527), Expect = 3.32e-212
Identity = 318/338 (94.08%), Postives = 321/338 (94.97%), Query Frame = 0


Query: 1   MKKTHPKRHRIPRRGPGVAELEKILKEQQGGADGGNGDQDQADVSSLPPSFFQHRRR-HS 60
           MKKTHPKRHRIPRRGPGVAELEKILKEQQGG  GGNG QDQA +SSLPPSFFQHRRR HS
Sbjct: 1   MKKTHPKRHRIPRRGPGVAELEKILKEQQGGHGGGNGGQDQAHISSLPPSFFQHRRRRHS 60

Query: 61  PSNTPSSLNPPRPPPTPPPPPLLPPPLTRDYASWSNLPLFPTLDFIPPALPTPTPAVAAV 120
           PSNTPSSLNPPRPPP PPPPPLLPPPLTRDYASWSNLPLFPTLDFIPPALPTPTPA AAV
Sbjct: 61  PSNTPSSLNPPRPPPPPPPPPLLPPPLTRDYASWSNLPLFPTLDFIPPALPTPTPAAAAV 120

Query: 121 EKPLFPTTRKSDAQINLPPHFFPTFQYSASSHNLMMVSAKRVRPFLDEGHRDPNAETRAP 180
           EKPLFPTTRKSDAQINLPPHFFPTFQYSASSHN MMVSAKRVRPFLDEGHRDPNAE+RAP
Sbjct: 121 EKPLFPTTRKSDAQINLPPHFFPTFQYSASSHNPMMVSAKRVRPFLDEGHRDPNAESRAP 180

Query: 181 FFTNMATKESSSSSSSSSSSSMDMNRSPFDLDSNSRGTKRGFGGELMRCSKRSERYQLAG 240
           FFTNMATKESSSSSSSSSSSSMDMNRSPFDLDSNSRGTKRGFGGELMRCSKRSERYQLAG
Sbjct: 181 FFTNMATKESSSSSSSSSSSSMDMNRSPFDLDSNSRGTKRGFGGELMRCSKRSERYQLAG 240

Query: 241 EVSHLMALGSSSSAPNEVAAAFNIHHPQETMEASQYRDGG-SASDYNKVTFNSSSSSLYE 300
           EVSHLMALGSSSSAPNEVAAAFNIHHPQETMEASQYRDGG SASDYNKVTFNSSSSSLYE
Sbjct: 241 EVSHLMALGSSSSAPNEVAAAFNIHHPQETMEASQYRDGGGSASDYNKVTFNSSSSSLYE 300

Query: 301 SKLKGNKDIVIGSGFEVEAEPGAE------GIDLSLKL 330
           SKLKGNK+IVIGSGFEVEAE  AE      GIDLSLKL
Sbjct: 301 SKLKGNKEIVIGSGFEVEAEAEAEAEAEAEGIDLSLKL 338

[Close]

BLAST of Cp4.1LG20g04610 vs. NCBI nr
Match: XP_022927210.1 (nuclear envelope pore membrane protein POM 121-like [Cucurbita moschata] >XP_022927212.1 nuclear envelope pore membrane protein POM 121-like [Cucurbita moschata] >XP_022927213.1 nuclear envelope pore membrane protein POM 121-like [Cucurbita moschata])

HSP 1 Score: 580 bits (1494), Expect = 1.33e-206
Identity = 316/374 (84.49%), Postives = 321/374 (85.83%), Query Frame = 0


Query: 1   MKKTHPKRHRIPRRGPGVAELEKILKEQQGGADGGNGD--QDQADVSSLPPSFFQHRRRH 60
           MKKT PKRHRIPRRGPGVAELEKILKEQ+GG  GGNG+  QDQAD+SSLPPSFFQHRRRH
Sbjct: 1   MKKTQPKRHRIPRRGPGVAELEKILKEQEGGDGGGNGNGGQDQADISSLPPSFFQHRRRH 60

Query: 61  SPSNTPSSLNPPRPPPTPPPPPLLPPPLTRDYASWSNLPLFPTLDFIPPALPTPTPAVAA 120
           SPSNTPSSLNPPRPPP PPPPPLLPPPLTRDYASWSNLPLFPTLDFIPPALPTPTPA AA
Sbjct: 61  SPSNTPSSLNPPRPPPPPPPPPLLPPPLTRDYASWSNLPLFPTLDFIPPALPTPTPAAAA 120

Query: 121 VEKPLFPTTRKSDAQINLPPHFFPTFQYSASSHNLMM----------------------- 180
           VEKPLFPTTRKSDAQINLPPHFFPTFQYSASSHN MM                       
Sbjct: 121 VEKPLFPTTRKSDAQINLPPHFFPTFQYSASSHNPMMNIIPGSATSPAARYYRQIEHPSS 180

Query: 181 -------------------VSAKRVRPFLDEGHRDPNAETRAPFFTNMATKESSSSSSSS 240
                              VSAKRVRPFLDEGHRDPNAE+RAPFFTNMATKESSSSSSSS
Sbjct: 181 QISTQFNNTWTSPEEQQKMVSAKRVRPFLDEGHRDPNAESRAPFFTNMATKESSSSSSSS 240

Query: 241 SSSSMDMNRSPFDLDSNSRGTKRGFGGELMRCSKRSERYQLAGEVSHLMALGSSSSAPNE 300
           SSSSMDMNRSPFDLDSNSRGTKRGFGGELMRCSKRSERYQLAGEVSHLMALGSSSSAPNE
Sbjct: 241 SSSSMDMNRSPFDLDSNSRGTKRGFGGELMRCSKRSERYQLAGEVSHLMALGSSSSAPNE 300

Query: 301 VAAAFNIHHPQETMEASQYRDGGSASDYNKVTFNSSSSSLYESKLKGNKDIVIGSGFEVE 330
           VAAAFNIHHPQET EASQYRDGGSASDYNKVTFNSSSSSLYESKLKGNK+IVIGSGFEVE
Sbjct: 301 VAAAFNIHHPQETTEASQYRDGGSASDYNKVTFNSSSSSLYESKLKGNKEIVIGSGFEVE 360

[Close]

BLAST of Cp4.1LG20g04610 vs. NCBI nr
Match: XP_023001726.1 (trinucleotide repeat-containing gene 18 protein-like [Cucurbita maxima] >XP_023001727.1 trinucleotide repeat-containing gene 18 protein-like [Cucurbita maxima])

HSP 1 Score: 573 bits (1477), Expect = 5.35e-204
Identity = 314/375 (83.73%), Postives = 320/375 (85.33%), Query Frame = 0


Query: 1   MKKTHPKRHRIPRRGPGVAELEKILKEQQGGADGGNGDQDQADVSSLPPSFFQHRRRHSP 60
           MKKTHPKRHRIPRRGPGVAELEKILKEQ+GG  GGNG QDQAD+SSLPPSFFQHRRRHSP
Sbjct: 1   MKKTHPKRHRIPRRGPGVAELEKILKEQEGGNGGGNGGQDQADISSLPPSFFQHRRRHSP 60

Query: 61  SNTPSSLNPPRPPPTPPPPPLLPPPLTRDYASWSNLPLFPTLDFIPPALPTPTPAVAAV- 120
           SNTPSSLNPPRPPP PPPPPLLPPPLTRDYASWSNLPLFPTLDFIPPALPTPTPA AA  
Sbjct: 61  SNTPSSLNPPRPPPPPPPPPLLPPPLTRDYASWSNLPLFPTLDFIPPALPTPTPAAAAAA 120

Query: 121 -EKPLFPTTRKSDAQINLPPHFFPTFQYSASSHNLMM----------------------- 180
            EKPLFPTTRKSDAQINLPPHFFPTFQYSASSHNLMM                       
Sbjct: 121 AEKPLFPTTRKSDAQINLPPHFFPTFQYSASSHNLMMNIIPGSATSPATRYYRQIEHPSS 180

Query: 181 -------------------VSAKRVRPFLDEGHRDPNAETRAPFFTNMATKESSSSSSSS 240
                              VSAKRVRPFLDEGHRDPNAE+RAPFFTNMATKESSSSSSSS
Sbjct: 181 QISTQFNHTWTSPEEQQKMVSAKRVRPFLDEGHRDPNAESRAPFFTNMATKESSSSSSSS 240

Query: 241 SSSSMDMNRSPFDLDSNSRGTKRGFGGELMRCSKRSERYQLAGEVSHLMALGSSSSAPNE 300
           SSSSMDMNRSPF+LDSNSRGTKRGFGGELMRCSKRSERYQLAGEVSHLMALGSSSSAPNE
Sbjct: 241 SSSSMDMNRSPFNLDSNSRGTKRGFGGELMRCSKRSERYQLAGEVSHLMALGSSSSAPNE 300

Query: 301 VAAAFNIHHPQETMEASQYRD-GGSASDYNKVTFNSSSSSLYESKLKGNKDIVIGSGFEV 330
           VAAAFNIHHPQETMEASQYRD GGSASDYNKVTFNSSSSSLYESK KGNK+IVIGS FEV
Sbjct: 301 VAAAFNIHHPQETMEASQYRDEGGSASDYNKVTFNSSSSSLYESKSKGNKEIVIGSAFEV 360

[Close]

BLAST of Cp4.1LG20g04610 vs. NCBI nr
Match: KAG6583971.1 (hypothetical protein SDJN03_19903, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 571 bits (1471), Expect = 4.72e-203
Identity = 316/377 (83.82%), Postives = 320/377 (84.88%), Query Frame = 0


Query: 1   MKKTHPKRHRIPRRGPGVAELEKILKEQQGGADGGNGDQDQADVSSLPPSFFQHRRR-HS 60
           MKKTHPKRHRIPRRGPGVAELEKILKEQQGG  GGNG QDQA +SSLPPSFFQHRRR HS
Sbjct: 1   MKKTHPKRHRIPRRGPGVAELEKILKEQQGGHGGGNGGQDQAHISSLPPSFFQHRRRRHS 60

Query: 61  PSNTPSSLNPPRPPPTPPPPPLLPPPLTRDYASWSNLPLFPTLDFIPPALPTPTP---AV 120
           PSNTPSSLNPPRPPP PPPPPLLPPPLTRDYASWSNLPLFPTLDFIPPALPTPTP   A 
Sbjct: 61  PSNTPSSLNPPRPPPPPPPPPLLPPPLTRDYASWSNLPLFPTLDFIPPALPTPTPTPAAA 120

Query: 121 AAVEKPLFPTTRKSDAQINLPPHFFPTFQYSASSHNLMM--------------------- 180
           AAVEKPLFPTTRKSDAQINLPPHFFPTFQYSASSHNLMM                     
Sbjct: 121 AAVEKPLFPTTRKSDAQINLPPHFFPTFQYSASSHNLMMNIIPGSATSPAARYYRQIEHP 180

Query: 181 ---------------------VSAKRVRPFLDEGHRDPNAETRAPFFTNMATKESSSSSS 240
                                VSAKRVRPFLDEGHRDPNAE+RAPFFTNMATKESSSSSS
Sbjct: 181 SSQISTQFNNTWTSPEEQQKMVSAKRVRPFLDEGHRDPNAESRAPFFTNMATKESSSSSS 240

Query: 241 SSSSSSMDMNRSPFDLDSNSRGTKRGFGGELMRCSKRSERYQLAGEVSHLMALGSSSSAP 300
           SSSSSSMDMNRSP DLDSNSRGTKRGFGGELMRCSKRSERYQLAGEVSHLMALGSSSSAP
Sbjct: 241 SSSSSSMDMNRSPLDLDSNSRGTKRGFGGELMRCSKRSERYQLAGEVSHLMALGSSSSAP 300

Query: 301 NEVAAAFNIHHPQETMEASQYRDGG-SASDYNKVTFNSSSSSLYESKLKGNKDIVIGSGF 330
           NEVAAAFNIHHPQETMEASQYRDGG SASDYN+VTFNSSSSSLYESKLKGNK+IVIGSGF
Sbjct: 301 NEVAAAFNIHHPQETMEASQYRDGGGSASDYNRVTFNSSSSSLYESKLKGNKEIVIGSGF 360

[Close]

BLAST of Cp4.1LG20g04610 vs. ExPASy TrEMBL
Match: A0A6J1EGJ1 (nuclear envelope pore membrane protein POM 121-like OS=Cucurbita moschata OX=3662 GN=LOC111434129 PE=4 SV=1)

HSP 1 Score: 580 bits (1494), Expect = 6.44e-207
Identity = 316/374 (84.49%), Postives = 321/374 (85.83%), Query Frame = 0


Query: 1   MKKTHPKRHRIPRRGPGVAELEKILKEQQGGADGGNGD--QDQADVSSLPPSFFQHRRRH 60
           MKKT PKRHRIPRRGPGVAELEKILKEQ+GG  GGNG+  QDQAD+SSLPPSFFQHRRRH
Sbjct: 1   MKKTQPKRHRIPRRGPGVAELEKILKEQEGGDGGGNGNGGQDQADISSLPPSFFQHRRRH 60

Query: 61  SPSNTPSSLNPPRPPPTPPPPPLLPPPLTRDYASWSNLPLFPTLDFIPPALPTPTPAVAA 120
           SPSNTPSSLNPPRPPP PPPPPLLPPPLTRDYASWSNLPLFPTLDFIPPALPTPTPA AA
Sbjct: 61  SPSNTPSSLNPPRPPPPPPPPPLLPPPLTRDYASWSNLPLFPTLDFIPPALPTPTPAAAA 120

Query: 121 VEKPLFPTTRKSDAQINLPPHFFPTFQYSASSHNLMM----------------------- 180
           VEKPLFPTTRKSDAQINLPPHFFPTFQYSASSHN MM                       
Sbjct: 121 VEKPLFPTTRKSDAQINLPPHFFPTFQYSASSHNPMMNIIPGSATSPAARYYRQIEHPSS 180

Query: 181 -------------------VSAKRVRPFLDEGHRDPNAETRAPFFTNMATKESSSSSSSS 240
                              VSAKRVRPFLDEGHRDPNAE+RAPFFTNMATKESSSSSSSS
Sbjct: 181 QISTQFNNTWTSPEEQQKMVSAKRVRPFLDEGHRDPNAESRAPFFTNMATKESSSSSSSS 240

Query: 241 SSSSMDMNRSPFDLDSNSRGTKRGFGGELMRCSKRSERYQLAGEVSHLMALGSSSSAPNE 300
           SSSSMDMNRSPFDLDSNSRGTKRGFGGELMRCSKRSERYQLAGEVSHLMALGSSSSAPNE
Sbjct: 241 SSSSMDMNRSPFDLDSNSRGTKRGFGGELMRCSKRSERYQLAGEVSHLMALGSSSSAPNE 300

Query: 301 VAAAFNIHHPQETMEASQYRDGGSASDYNKVTFNSSSSSLYESKLKGNKDIVIGSGFEVE 330
           VAAAFNIHHPQET EASQYRDGGSASDYNKVTFNSSSSSLYESKLKGNK+IVIGSGFEVE
Sbjct: 301 VAAAFNIHHPQETTEASQYRDGGSASDYNKVTFNSSSSSLYESKLKGNKEIVIGSGFEVE 360

[Close]

BLAST of Cp4.1LG20g04610 vs. ExPASy TrEMBL
Match: A0A6J1KHF7 (trinucleotide repeat-containing gene 18 protein-like OS=Cucurbita maxima OX=3661 GN=LOC111495777 PE=4 SV=1)

HSP 1 Score: 573 bits (1477), Expect = 2.59e-204
Identity = 314/375 (83.73%), Postives = 320/375 (85.33%), Query Frame = 0


Query: 1   MKKTHPKRHRIPRRGPGVAELEKILKEQQGGADGGNGDQDQADVSSLPPSFFQHRRRHSP 60
           MKKTHPKRHRIPRRGPGVAELEKILKEQ+GG  GGNG QDQAD+SSLPPSFFQHRRRHSP
Sbjct: 1   MKKTHPKRHRIPRRGPGVAELEKILKEQEGGNGGGNGGQDQADISSLPPSFFQHRRRHSP 60

Query: 61  SNTPSSLNPPRPPPTPPPPPLLPPPLTRDYASWSNLPLFPTLDFIPPALPTPTPAVAAV- 120
           SNTPSSLNPPRPPP PPPPPLLPPPLTRDYASWSNLPLFPTLDFIPPALPTPTPA AA  
Sbjct: 61  SNTPSSLNPPRPPPPPPPPPLLPPPLTRDYASWSNLPLFPTLDFIPPALPTPTPAAAAAA 120

Query: 121 -EKPLFPTTRKSDAQINLPPHFFPTFQYSASSHNLMM----------------------- 180
            EKPLFPTTRKSDAQINLPPHFFPTFQYSASSHNLMM                       
Sbjct: 121 AEKPLFPTTRKSDAQINLPPHFFPTFQYSASSHNLMMNIIPGSATSPATRYYRQIEHPSS 180

Query: 181 -------------------VSAKRVRPFLDEGHRDPNAETRAPFFTNMATKESSSSSSSS 240
                              VSAKRVRPFLDEGHRDPNAE+RAPFFTNMATKESSSSSSSS
Sbjct: 181 QISTQFNHTWTSPEEQQKMVSAKRVRPFLDEGHRDPNAESRAPFFTNMATKESSSSSSSS 240

Query: 241 SSSSMDMNRSPFDLDSNSRGTKRGFGGELMRCSKRSERYQLAGEVSHLMALGSSSSAPNE 300
           SSSSMDMNRSPF+LDSNSRGTKRGFGGELMRCSKRSERYQLAGEVSHLMALGSSSSAPNE
Sbjct: 241 SSSSMDMNRSPFNLDSNSRGTKRGFGGELMRCSKRSERYQLAGEVSHLMALGSSSSAPNE 300

Query: 301 VAAAFNIHHPQETMEASQYRD-GGSASDYNKVTFNSSSSSLYESKLKGNKDIVIGSGFEV 330
           VAAAFNIHHPQETMEASQYRD GGSASDYNKVTFNSSSSSLYESK KGNK+IVIGS FEV
Sbjct: 301 VAAAFNIHHPQETMEASQYRDEGGSASDYNKVTFNSSSSSLYESKSKGNKEIVIGSAFEV 360

[Close]

BLAST of Cp4.1LG20g04610 vs. ExPASy TrEMBL
Match: A0A0A0LSF6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G077140 PE=4 SV=1)

HSP 1 Score: 253 bits (647), Expect = 2.91e-78
Identity = 198/404 (49.01%), Postives = 229/404 (56.68%), Query Frame = 0


Query: 1   MKKTHPKRHRIPRRGPGVAELEKILKEQQGGADGGNGDQDQADVSSLPPSFFQHRRRHSP 60
           M+KT  KR RIPRRGPGVAELEKILKEQ+ GA       D    SS  P         + 
Sbjct: 1   MRKTQAKRQRIPRRGPGVAELEKILKEQESGAA-----TDHQHTSS--PHTNSTSTAATT 60

Query: 61  SNTPSSLNPPRPPPTPPPPPLL------PPPLTRDYASWSN-LPLFPTLDFIPPA-LPTP 120
           +  P SLNPPRPPP PPPPPL+      PPPL RDY +WSN LPLFPTL+FIPP  LPT 
Sbjct: 61  TTHPLSLNPPRPPPPPPPPPLVQIMTPSPPPLPRDYVAWSNNLPLFPTLEFIPPPYLPT- 120

Query: 121 TPAVAAVEKPLFPTTRKSDAQINLPPHFFPTFQYSASSHNL------------------- 180
                  EKPLFPTTR S++Q+NL P+F P+FQYSASS N                    
Sbjct: 121 ----VVTEKPLFPTTRMSESQLNLAPYFLPSFQYSASSFNPDQYYNPMVNVNQGSGSSCP 180

Query: 181 ------------------------------------MMVSAKRVRPFLDEGHRDP-NAET 240
                                                MV+AKRV PFL+E HR+  N   
Sbjct: 181 SATSSSAGRHFREIEHPSSQISTDFNNIWNSPEEEEKMVNAKRVIPFLEESHREEANNNN 240

Query: 241 RAPFFTNMATKES---SSSSSSSSSSSMDMNRSPFDLDSNSRGTKRGFGGEL-MRCSKRS 300
                  M  + +   +  SSSSSSSSM+ N SPF   SN RGTKRG GG+  M  +KRS
Sbjct: 241 NNNIIEKMRVENNIMGTKDSSSSSSSSMETNCSPFHFHSNFRGTKRGLGGQSRMSNTKRS 300

Query: 301 ERYQLAGEVSHLMALGSSSS-APNEVAAAFNIHH-PQETMEASQYRD-GGSASDYNKVTF 330
            RYQL  + S+LMALGSSSS APNE+   FNI H PQETME  Q+RD GG  SDY K+ F
Sbjct: 301 GRYQLGDQESNLMALGSSSSSAPNEIPT-FNIFHLPQETMEVPQHRDEGGCPSDYYKLNF 360

[Close]

BLAST of Cp4.1LG20g04610 vs. ExPASy TrEMBL
Match: A0A1S3B6J8 (uncharacterized protein DDB_G0271670-like OS=Cucumis melo OX=3656 GN=LOC103486731 PE=4 SV=1)

HSP 1 Score: 252 bits (643), Expect = 1.16e-77
Identity = 202/409 (49.39%), Postives = 233/409 (56.97%), Query Frame = 0


Query: 1   MKKTHPKRHRIPRRGPGVAELEKILKEQQGGADGGNGDQDQADVSSLPPSFFQHRRRHSP 60
           M+KT  KR RIPRRGPGVAELEKILKEQ+ G             +S       H    S 
Sbjct: 1   MRKTQAKRQRIPRRGPGVAELEKILKEQESGG------------ASTDQHISPHTNSTST 60

Query: 61  SNT-PSSLNPPRPPPTPPPPPLL------PPPLTRDYASWSN-LPLFPTLDFIPPA-LPT 120
           + T P SLNPP PPP PPPPPL+      P P  RDY SW+N LPLFPTL+FIPP  LPT
Sbjct: 61  ATTHPLSLNPPLPPPPPPPPPLVQIMTPSPTPPPRDYVSWTNNLPLFPTLEFIPPPYLPT 120

Query: 121 PTPAVAAVEKPLFPTTRKSDA-QINLPPHFFPTFQYSASS------HNLM---------- 180
                 A EKPLFPTTR S+A Q+NL P+F PTFQ+SASS      +N M          
Sbjct: 121 -----VAAEKPLFPTTRISEASQLNLAPYFLPTFQFSASSCNPDQYYNPMVNINQGSGSS 180

Query: 181 ---------------------------------------MVSAKRVRPFLDEGHRDP--- 240
                                                  MV+AKRV PFL+E HR+    
Sbjct: 181 CPSATSSSAGRYLREIEHPSSQISTDFNNIWTSPEEQEKMVNAKRVIPFLEESHREEANN 240

Query: 241 ----NAETRAPFFTN-MATKESSSSSSSSSSSS-MDMNRSPFDLDSNSRGTKRGFGGELM 300
               N   +     N M TK+SSSSSSSSSSSS M++N SPF   SN RGTKRG  G+LM
Sbjct: 241 NNNNNIIEKMRVENNTMGTKDSSSSSSSSSSSSSMEINCSPFHSHSNFRGTKRGSAGQLM 300

Query: 301 RCS-KRSERYQLAGEVSHLMALGSSSS-APNEVAAAFNIHH-PQETMEASQYRDGGSASD 330
           + + KRS RYQL  + S+LMALGSSSS APNE+   FNI H P+ETME  Q+RDGG  SD
Sbjct: 301 KNNTKRSGRYQLGDQESNLMALGSSSSSAPNEIPT-FNIFHLPKETMEVPQHRDGGCPSD 360

[Close]

BLAST of Cp4.1LG20g04610 vs. ExPASy TrEMBL
Match: A0A6J1GSS8 (proline-rich receptor-like protein kinase PERK2 OS=Cucurbita moschata OX=3662 GN=LOC111457104 PE=4 SV=1)

HSP 1 Score: 153 bits (387), Expect = 2.84e-40
Identity = 152/395 (38.48%), Postives = 182/395 (46.08%), Query Frame = 0


Query: 1   MKKTHPKRHRIPRRGPGVAELEKILKEQQGGADGGNGDQDQADVSSLPPSFFQHRRRHSP 60
           MKKT  KR R PRRGPGVAELEKILKEQQ           Q   +  PP           
Sbjct: 1   MKKTPAKRQRTPRRGPGVAELEKILKEQQA----------QDSNTQFPP----------- 60

Query: 61  SNTPSSLNPPRPPPTPPPPPLLPPPLTRDYASWSN-LPLFPTLDFIPP----ALPTPTPA 120
                 ++PP PPP PPP        +  + S S  LPL P + F+PP    + P  +P 
Sbjct: 61  ------MSPPPPPPPPPP--------SHQFLSPSPPLPLTP-IPFLPPREFPSRPNISPF 120

Query: 121 VAAVEKPLFPTTRKSDAQINLPPHFFPTFQYSASSHNLM--------------------- 180
                +P  P   KSD QIN+PP F P FQ+S  S N                       
Sbjct: 121 TTLRPRPPPP---KSDTQINIPPQFVPNFQFSPPSLNRQFYNNPMENFTPASASSSSCPP 180

Query: 181 -----------------------------------MVSAKRVRPFLDEGHRDPNAETRAP 240
                                              +VS KR RPFLDE H DPN      
Sbjct: 181 ATPPPPNCFNQIEQPSSQKSPDLNHPWTTPEEQEQIVSGKRTRPFLDEAHWDPN------ 240

Query: 241 FFTNMATKESSSSSSSSSSSSMDMNRSPFDLDSNSRGTKRGFGGELMRCSKRSERYQLAG 300
              N+A K+  SSSSSSSSSS +MNRS   LDSN  G+                 YQL  
Sbjct: 241 -LFNIARKKGCSSSSSSSSSS-EMNRSAMFLDSNLSGS-----------------YQLGE 300

Query: 301 EVSHLMALGSSSSAPNEVAAAFNIHHPQETMEASQYRDGGSASDYNKVTFNSSSSSLYES 330
           + S L+AL SSS+ PN+ A      H QETME S +RDGGSAS+YNK+TF++S+ S  +S
Sbjct: 301 DSSSLLALRSSST-PNQFAP----FHFQETMETSMHRDGGSASNYNKITFDTSNGSKMKS 326

The following BLAST results are available for this feature:

BLAST of Cp4.1LG20g04610 vs.


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG20g04610 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023520013.1	2.41e-220	88.71	uncharacterized protein LOC111783325 [Cucurbita pepo subsp. pepo] >XP_023520014....	[more]
KAG7019594.1	3.32e-212	94.08	hypothetical protein SDJN02_18557, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022927210.1	1.33e-206	84.49	nuclear envelope pore membrane protein POM 121-like [Cucurbita moschata] >XP_022...	[more]
XP_023001726.1	5.35e-204	83.73	trinucleotide repeat-containing gene 18 protein-like [Cucurbita maxima] >XP_0230...	[more]
KAG6583971.1	4.72e-203	83.82	hypothetical protein SDJN03_19903, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Cp4.1LG20g04610 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EGJ1	6.44e-207	84.49	nuclear envelope pore membrane protein POM 121-like OS=Cucurbita moschata OX=366...	[more]
A0A6J1KHF7	2.59e-204	83.73	trinucleotide repeat-containing gene 18 protein-like OS=Cucurbita maxima OX=3661...	[more]
A0A0A0LSF6	2.91e-78	49.01	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G077140 PE=4 SV=1	[more]
A0A1S3B6J8	1.16e-77	49.39	uncharacterized protein DDB_G0271670-like OS=Cucumis melo OX=3656 GN=LOC10348673...	[more]
A0A6J1GSS8	2.84e-40	38.48	proline-rich receptor-like protein kinase PERK2 OS=Cucurbita moschata OX=3662 GN...	[more]

BLAST of Cp4.1LG20g04610 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 65..86
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 166..223
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..86
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 179..213
None	No IPR available	PANTHER	PTHR33388:SF19	PROTEIN SPEAR2	coord: 82..330
None	No IPR available	PANTHER	PTHR33388:SF19	PROTEIN SPEAR2	coord: 5..77
IPR040356	SPEAR family	PANTHER	PTHR33388	OS01G0212500 PROTEIN	coord: 5..77 coord: 82..330

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG20g04610.1	Cp4.1LG20g04610.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
molecular_function	GO:0003700	DNA-binding transcription factor activity