Cp4.1LG20g04050 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG20g04050
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionWound-responsive family protein
LocationCp4.1LG20: 2299471 .. 2299707 (+)
RNA-Seq ExpressionCp4.1LG20g04050
SyntenyCp4.1LG20g04050
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGCCGTAGATTTTACAAGGGCGAGATCAGCGGAATGAAAGATCCGACGGCGAAGCGTGAGCCGATATTGAAGGCGGTGAGAGATCATTCGGGATCATCTTCGAATCAGGGGGCAAGGGGATTTTACAGTGGTATGGATTCGAGTGCGGTAATGGCTGCGAAGGCGGAGAAACTTAAGCGGGCCGAGGAGTCTCTCAGAACGGTTATGTATTTGAGCTGTTGGGGGCCTAACTAA

mRNA sequence

ATGAGCCGTAGATTTTACAAGGGCGAGATCAGCGGAATGAAAGATCCGACGGCGAAGCGTGAGCCGATATTGAAGGCGGTGAGAGATCATTCGGGATCATCTTCGAATCAGGGGGCAAGGGGATTTTACAGTGGTATGGATTCGAGTGCGGTAATGGCTGCGAAGGCGGAGAAACTTAAGCGGGCCGAGGAGTCTCTCAGAACGGTTATGTATTTGAGCTGTTGGGGGCCTAACTAA

Coding sequence (CDS)

ATGAGCCGTAGATTTTACAAGGGCGAGATCAGCGGAATGAAAGATCCGACGGCGAAGCGTGAGCCGATATTGAAGGCGGTGAGAGATCATTCGGGATCATCTTCGAATCAGGGGGCAAGGGGATTTTACAGTGGTATGGATTCGAGTGCGGTAATGGCTGCGAAGGCGGAGAAACTTAAGCGGGCCGAGGAGTCTCTCAGAACGGTTATGTATTTGAGCTGTTGGGGGCCTAACTAA

Protein sequence

MSRRFYKGEISGMKDPTAKREPILKAVRDHSGSSSNQGARGFYSGMDSSAVMAAKAEKLKRAEESLRTVMYLSCWGPN
Homology
BLAST of Cp4.1LG20g04050 vs. NCBI nr
Match: KAG7019649.1 (hypothetical protein SDJN02_18612, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 149 bits (377), Expect = 2.88e-45
Identity = 75/78 (96.15%), Postives = 76/78 (97.44%), Query Frame = 0

Query: 1  MSRRFYKGEISGMKDPTAKREPILKAVRDHSGSSSNQGARGFYSGMDSSAVMAAKAEKLK 60
          MSRRFYKGEISGMKDPTAKRE +LKAVRDHSGSSSNQGARGFYSGMDSSA MAAKAEKLK
Sbjct: 1  MSRRFYKGEISGMKDPTAKREAMLKAVRDHSGSSSNQGARGFYSGMDSSAAMAAKAEKLK 60

Query: 61 RAEESLRTVMYLSCWGPN 78
          RAEESLRTVMYLSCWGPN
Sbjct: 61 RAEESLRTVMYLSCWGPN 78

BLAST of Cp4.1LG20g04050 vs. NCBI nr
Match: KAG6584036.1 (hypothetical protein SDJN03_19968, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 123 bits (308), Expect = 2.24e-33
Identity = 64/67 (95.52%), Postives = 65/67 (97.01%), Query Frame = 0

Query: 1  MSRRFYKGEISGMKDPTAKREPILKAVRDHSGSSSNQGARGFYSGMDSSAVMAAKAEKLK 60
          MSRRFYKGEISGMKDPTAKRE +LKAVRDHSGSSSNQGARGFYSGMDSSA MAAKAEKLK
Sbjct: 1  MSRRFYKGEISGMKDPTAKREAMLKAVRDHSGSSSNQGARGFYSGMDSSAAMAAKAEKLK 60

Query: 61 RAEESLR 67
          RAEESLR
Sbjct: 61 RAEESLR 67

BLAST of Cp4.1LG20g04050 vs. NCBI nr
Match: KAG6573231.1 (hypothetical protein SDJN03_27118, partial [Cucurbita argyrosperma subsp. sororia] >KAG7012404.1 hypothetical protein SDJN02_25156, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 91.3 bits (225), Expect = 1.78e-21
Identity = 50/78 (64.10%), Postives = 55/78 (70.51%), Query Frame = 0

Query: 1   MSRRFYKGEISGMKDPTAKREPILKAVRDHSGSSSNQGARGFYSGMDSSAVMAAKAEKLK 60
           +S   Y GE  GM D  A+REP  K +RD SGSSS     GF S + S A MAAKAEK+K
Sbjct: 54  LSLPLYGGETGGMNDQRAEREPAAKGLRDPSGSSSQ--TTGFCSAVGSIAAMAAKAEKVK 113

Query: 61  RAEESLRTVMYLSCWGPN 78
           RAEESLRTVMYLSCWGPN
Sbjct: 114 RAEESLRTVMYLSCWGPN 129

BLAST of Cp4.1LG20g04050 vs. NCBI nr
Match: KAE7995563.1 (hypothetical protein FH972_000343 [Carpinus fangiana])

HSP 1 Score: 76.3 bits (186), Expect = 3.82e-16
Identity = 39/78 (50.00%), Postives = 54/78 (69.23%), Query Frame = 0

Query: 1  MSRRFYKGEISGMKDPTAKREPILKAVRDHSGSSSNQGARGFYSGMDSSAVMAAKAEKLK 60
          MS ++    + GMKD  +K +  +K++RD   SSS++ A+ F    DS+A+ AA  EK+K
Sbjct: 1  MSLKYMSRVLQGMKDQASKCDSTVKSLRDSPCSSSSKQAKLFSGAFDSAALKAANNEKIK 60

Query: 61 RAEESLRTVMYLSCWGPN 78
          +AEES RTVMYLSCWGPN
Sbjct: 61 QAEESFRTVMYLSCWGPN 78

BLAST of Cp4.1LG20g04050 vs. NCBI nr
Match: OMO65041.1 (hypothetical protein COLO4_31599 [Corchorus olitorius])

HSP 1 Score: 74.3 bits (181), Expect = 2.71e-15
Identity = 38/69 (55.07%), Postives = 51/69 (73.91%), Query Frame = 0

Query: 10 ISGMKDPTAKREPILKAVRDHSGSSSNQGARGFYSGMDSSAVMAAKAEKLKRAEESLRTV 69
            GMKD  +K E  L++++D + SSS++ AR F + +DS A  AA  E+L++AEESLRTV
Sbjct: 18 FQGMKDQASKCESNLRSLKDSASSSSSKQARRFSNTVDSGAFKAATNERLRQAEESLRTV 77

Query: 70 MYLSCWGPN 78
          MYLSCWGPN
Sbjct: 78 MYLSCWGPN 86

BLAST of Cp4.1LG20g04050 vs. ExPASy TrEMBL
Match: A0A5N6QBJ8 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_000343 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 1.85e-16
Identity = 39/78 (50.00%), Postives = 54/78 (69.23%), Query Frame = 0

Query: 1  MSRRFYKGEISGMKDPTAKREPILKAVRDHSGSSSNQGARGFYSGMDSSAVMAAKAEKLK 60
          MS ++    + GMKD  +K +  +K++RD   SSS++ A+ F    DS+A+ AA  EK+K
Sbjct: 1  MSLKYMSRVLQGMKDQASKCDSTVKSLRDSPCSSSSKQAKLFSGAFDSAALKAANNEKIK 60

Query: 61 RAEESLRTVMYLSCWGPN 78
          +AEES RTVMYLSCWGPN
Sbjct: 61 QAEESFRTVMYLSCWGPN 78

BLAST of Cp4.1LG20g04050 vs. ExPASy TrEMBL
Match: A0A7N2LSL0 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 8.34e-16
Identity = 43/82 (52.44%), Postives = 57/82 (69.51%), Query Frame = 0

Query: 1  MSRRFYKGE---ISGMKDPTAKREPILKAVRDHS-GSSSNQGARGFYSGMDSSAVMAAKA 60
          MSR  Y+     I GMKD  +K +  + ++RD +  SSS++ AR F +  DS+A  AA +
Sbjct: 1  MSRSLYQSGMRVIQGMKDQASKCDSTVNSLRDSAYSSSSSKQARLFSTACDSAAYKAANS 60

Query: 61 EKLKRAEESLRTVMYLSCWGPN 78
          EK+K+AEESLRTVMYLSCWGPN
Sbjct: 61 EKIKQAEESLRTVMYLSCWGPN 82

BLAST of Cp4.1LG20g04050 vs. ExPASy TrEMBL
Match: A0A1R3H3Y0 (Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_31599 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 1.31e-15
Identity = 38/69 (55.07%), Postives = 51/69 (73.91%), Query Frame = 0

Query: 10 ISGMKDPTAKREPILKAVRDHSGSSSNQGARGFYSGMDSSAVMAAKAEKLKRAEESLRTV 69
            GMKD  +K E  L++++D + SSS++ AR F + +DS A  AA  E+L++AEESLRTV
Sbjct: 18 FQGMKDQASKCESNLRSLKDSASSSSSKQARRFSNTVDSGAFKAATNERLRQAEESLRTV 77

Query: 70 MYLSCWGPN 78
          MYLSCWGPN
Sbjct: 78 MYLSCWGPN 86

BLAST of Cp4.1LG20g04050 vs. ExPASy TrEMBL
Match: B9H210 (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_004G033300 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 1.35e-15
Identity = 40/70 (57.14%), Postives = 52/70 (74.29%), Query Frame = 0

Query: 10 ISGMKDPTAKREP-ILKAVRDHSGSSSNQGARGFYSGMDSSAVMAAKAEKLKRAEESLRT 69
          + GMKD  +K +   +K++RD + SSS++ AR F   +DSSA M AK EK K+AEESLRT
Sbjct: 18 VQGMKDQASKCDSSAIKSLRDSACSSSSKQARRFSGSVDSSAYMNAKNEKFKQAEESLRT 77

Query: 70 VMYLSCWGPN 78
          VM+LSCWGPN
Sbjct: 78 VMFLSCWGPN 87

BLAST of Cp4.1LG20g04050 vs. ExPASy TrEMBL
Match: A0A5N5MZZ3 (Uncharacterized protein OS=Salix brachista OX=2182728 GN=DKX38_005484 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 1.91e-15
Identity = 42/82 (51.22%), Postives = 57/82 (69.51%), Query Frame = 0

Query: 1  MSRRFYKGE---ISGMKDPTAKREP-ILKAVRDHSGSSSNQGARGFYSGMDSSAVMAAKA 60
          MSR  Y+     + GMKD  +K +   +K++RD + SSS++ AR F   +DSS  M A++
Sbjct: 6  MSRVLYQSGMRVVQGMKDQASKCDSSAIKSLRDSACSSSSKQARRFSGSVDSSVFMDARS 65

Query: 61 EKLKRAEESLRTVMYLSCWGPN 78
          EK K+AEESLRTVM+LSCWGPN
Sbjct: 66 EKFKQAEESLRTVMFLSCWGPN 87

BLAST of Cp4.1LG20g04050 vs. TAIR 10
Match: AT4G10270.1 (Wound-responsive family protein )

HSP 1 Score: 56.6 bits (135), Expect = 1.0e-08
Identity = 32/76 (42.11%), Postives = 46/76 (60.53%), Query Frame = 0

Query: 8  GEISGMKDP--TAKREPILKAVRDH---SGSSSNQGARGFYSGMDSSAVMAAKAEKLKRA 67
          G +  +KD     +   IL++V  H   +  S +QG R   S + ++   + ++EK K+A
Sbjct: 15 GAVEALKDQLGLCRWNYILRSVNQHLRNNVRSVSQGKRFSSSSVSAAVTSSGESEKAKKA 74

Query: 68 EESLRTVMYLSCWGPN 79
          EESLRTVMYLSCWGPN
Sbjct: 75 EESLRTVMYLSCWGPN 90

BLAST of Cp4.1LG20g04050 vs. TAIR 10
Match: AT4G05070.1 (Wound-responsive family protein )

HSP 1 Score: 51.6 bits (122), Expect = 3.3e-07
Identity = 26/60 (43.33%), Postives = 38/60 (63.33%), Query Frame = 0

Query: 17 TAKREPILKAVRDHSGSSSNQGARGFYSGMDSSAVMAAKAEKLKRAEESLRTVMYLSCWG 76
          T  R  + ++V     +SS+   R     ++SS   AA +E+L++AEESLRTVM+LSCWG
Sbjct: 26 TTLRSAVKESVSSPQSASSSSSVRRLKGDLESSRFGAAASERLRQAEESLRTVMFLSCWG 85

BLAST of Cp4.1LG20g04050 vs. TAIR 10
Match: AT4G10265.1 (Wound-responsive family protein )

HSP 1 Score: 42.0 bits (97), Expect = 2.6e-04
Identity = 22/49 (44.90%), Postives = 31/49 (63.27%), Query Frame = 0

Query: 34 SSNQGARGFYSGMDSSAVMAAKA----EKLKRAEESLRTVMYLSCWGPN 79
          S+NQ  R     +  +  +++ +     K K+AEESLRTVMYLSCWGP+
Sbjct: 35 SANQYLRNNLRSVSQAKKLSSSSIDYTNKTKQAEESLRTVMYLSCWGPS 83

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG7019649.12.88e-4596.15hypothetical protein SDJN02_18612, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6584036.12.24e-3395.52hypothetical protein SDJN03_19968, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6573231.11.78e-2164.10hypothetical protein SDJN03_27118, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAE7995563.13.82e-1650.00hypothetical protein FH972_000343 [Carpinus fangiana][more]
OMO65041.12.71e-1555.07hypothetical protein COLO4_31599 [Corchorus olitorius][more]
Match NameE-valueIdentityDescription
A0A5N6QBJ81.85e-1650.00Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_000343 PE=4 SV=1[more]
A0A7N2LSL08.34e-1652.44Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1[more]
A0A1R3H3Y01.31e-1555.07Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_31599 PE=4 SV=1[more]
B9H2101.35e-1557.14Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_004G033300 PE=4 ... [more]
A0A5N5MZZ31.91e-1551.22Uncharacterized protein OS=Salix brachista OX=2182728 GN=DKX38_005484 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT4G10270.11.0e-0842.11Wound-responsive family protein [more]
AT4G05070.13.3e-0743.33Wound-responsive family protein [more]
AT4G10265.12.6e-0444.90Wound-responsive family protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR022251Protein of unknown function wound-inducedPFAMPF12609DUF3774coord: 19..77
e-value: 4.4E-12
score: 46.9
IPR022251Protein of unknown function wound-inducedPANTHERPTHR33090DUF3774 DOMAIN PROTEIN-RELATEDcoord: 1..78
NoneNo IPR availablePANTHERPTHR33090:SF41WOUND-RESPONSIVE FAMILY PROTEINcoord: 1..78

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG20g04050.1Cp4.1LG20g04050.1mRNA