Cp4.1LG20g03900 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG20g03900
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	transcription factor bHLH112-like
Location	Cp4.1LG20: 2244866 .. 2246848 (+)
RNA-Seq Expression	Cp4.1LG20g03900
Synteny	Cp4.1LG20g03900

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGATCATAACTTGTTAATATCATAACCAACAAGTCGATATAGTAAGTGAGGAGGAGGAGGCTCAAATCAGAGGCAAAGATACTAAGGAATTTGAAGCAAAAAGCTGTAAAACCTTAGTATGGACGATGAATTTCCACCTGGGATTTGCGGTCGGAAGTTGTGGGATACAACCAAGATCACGTTCCCGCCGGCGGCCGCCACTCCCTCGCCGTGTTCCGTCAGTGACTCCACCTTCTTGATTGATCCAACCGTTCGAACGCCTTCCAATTGGAACCAAAATTTTCTGTAAGTTCATCATCACATTACAATTCTTTTTGAATCAATAGAAAATATAGACAAAAATTGTTGCTTTTTTGTGATTGGCAGTGGAGATGATGGGCAAAGAGTTGACACCACTTTGATGGTGGATTATGATCACCAAGAAACTAATGCATCCGAGGAGCCACAAAATCCTTCCATTTTCAACGCCGATCATGATTCTATGTTCTTAATGGGCCAAACGCATTCCAACTTTTACGATAATATTGTGACAACTACAAGCCAAGGGTTACCGATGGCTTACCCTTTTGGGATGATCTCCAATGGGTACACTCCAACGTTGTTGCCAAGTTCATTGGATCAACCAAAACAGTTTCTTGTCAACAACCGGACCATTAGTAATTCTTGTCGGCCTATGTTTGAAACCCTGAATTTCACAACAAAGGTAATAATTTAAATGATCACCATTTCAAGTCTTCATACATAGTTCAATTTGCTGTAAAAGTTTGATATTTTGGTTTGGACACTTGATCCATTTTTCAGCTGATTAGTTGCGAGGAAGTTGTTCGAGATTCGAGTCGGGTTGAGACGAAAAACAAAAGTAACGAAATTACGACAATCAAAAGGGCAAGGAATGACATGCCATCCTCATTACCCACTTTTAAGGTGCACTTCATAATACATTTACTCATTTTTAAGATAGCCCACCGCTAGCAGATATTGTCCCGTTCTCTTTGAGCTTTTCCGCAAGTCTACGAGAGAAAGGGACTTGAGAGAGAGGTTTTCACACCCTTACAAATAATGATGTGTTCTTCTCCCTAACCGATGTGGGACCCCCTAATCCACCACCTTTGGAGCCAGCGTCCTTGCTGGCACACCACCTCATGTTCACCCCCTTCGGGGCTTAGCCTCCTCGCTGGCATATCGCTCGGTGTCTGACTCTGATATCATTTATAATGATTTGAGCCCACCGCTAAGAGATATTATCTTTTTTGGGCTTTCTCTCAATGTTTTTAAAACGCGTCTACTAGAAAGGTTTCCACTCCGTTATAAAAAAATGTTTCGTTCTCCTCCCCAACTGACATTGGATCTCACACTCAAACCCTAATTCTAGTTTGTACTATATAATAAGTAATTTTTGGAACGGATCGACAGGTTCGAAAAGAGAAGCTTGGCGACAAGATCACAGCGCTCCAACAGCTTGTTTCTCCTTTTGGAAAGGTAAAATTTAGAATCTTCAACAATATTTATAAGGCAATTTTGATGTGGTATGCTTTTTAATATAATAATATATGATGATATCACATTCCAGACCGATACTGCATCAGTTCTACATGAAGCAATTGAGTACATCAAGTTTCTTCACGATCAAGTTCGTGTAAGTTCTTCCCATTGTGTCCTTATTTCCTGTACAACCAAGATGTAACAAAATTGTGCAGGTTTTGAGTACTCCATATATGGAAATGGGCGAGCAGGAGCATGATGGCGTGCAGCTTGTTAAGGAAGAATTGGAAGAGAATAAGAAACAAGATCTAACAAGTAGAGGACTTTGTCTGGTGCCAATTCCAAGTTCAGTTGCATTAGCAAATGGTAACACACTTGATTTCTGGTCGCCCACTTTTGGAGGAACCTTTAGGTAATGTAATGGACCTCAGATTTGAGATGAAAATGGTGGCACCCAAATTGGTGATGCTGGGAGAGGTTGCCAAACGTTTACAAATAAGC

mRNA sequence

TGATCATAACTTGTTAATATCATAACCAACAAGTCGATATAGTAAGTGAGGAGGAGGAGGCTCAAATCAGAGGCAAAGATACTAAGGAATTTGAAGCAAAAAGCTGTAAAACCTTAGTATGGACGATGAATTTCCACCTGGGATTTGCGGTCGGAAGTTGTGGGATACAACCAAGATCACGTTCCCGCCGGCGGCCGCCACTCCCTCGCCGTGTTCCGTCAGTGACTCCACCTTCTTGATTGATCCAACCGTTCGAACGCCTTCCAATTGGAACCAAAATTTTCTTGGAGATGATGGGCAAAGAGTTGACACCACTTTGATGGTGGATTATGATCACCAAGAAACTAATGCATCCGAGGAGCCACAAAATCCTTCCATTTTCAACGCCGATCATGATTCTATGTTCTTAATGGGCCAAACGCATTCCAACTTTTACGATAATATTGTGACAACTACAAGCCAAGGGTTACCGATGGCTTACCCTTTTGGGATGATCTCCAATGGGTACACTCCAACGTTGTTGCCAAGTTCATTGGATCAACCAAAACAGTTTCTTGTCAACAACCGGACCATTAGTAATTCTTGTCGGCCTATGTTTGAAACCCTGAATTTCACAACAAAGACCGATACTGCATCAGTTCTACATGAAGCAATTGAGTACATCAAGTTTCTTCACGATCAAGTTCGTGTTTTGAGTACTCCATATATGGAAATGGGCGAGCAGGAGCATGATGGCGTGCAGCTTGTTAAGGAAGAATTGGAAGAGAATAAGAAACAAGATCTAACAAGTAGAGGACTTTGTCTGGTGCCAATTCCAAGTTCAGTTGCATTAGCAAATGGTAACACACTTGATTTCTGGTCGCCCACTTTTGGAGGAACCTTTAGGTAATGTAATGGACCTCAGATTTGAGATGAAAATGGTGGCACCCAAATTGGTGATGCTGGGAGAGGTTGCCAAACGTTTACAAATAAGC

Coding sequence (CDS)

ATGGACGATGAATTTCCACCTGGGATTTGCGGTCGGAAGTTGTGGGATACAACCAAGATCACGTTCCCGCCGGCGGCCGCCACTCCCTCGCCGTGTTCCGTCAGTGACTCCACCTTCTTGATTGATCCAACCGTTCGAACGCCTTCCAATTGGAACCAAAATTTTCTTGGAGATGATGGGCAAAGAGTTGACACCACTTTGATGGTGGATTATGATCACCAAGAAACTAATGCATCCGAGGAGCCACAAAATCCTTCCATTTTCAACGCCGATCATGATTCTATGTTCTTAATGGGCCAAACGCATTCCAACTTTTACGATAATATTGTGACAACTACAAGCCAAGGGTTACCGATGGCTTACCCTTTTGGGATGATCTCCAATGGGTACACTCCAACGTTGTTGCCAAGTTCATTGGATCAACCAAAACAGTTTCTTGTCAACAACCGGACCATTAGTAATTCTTGTCGGCCTATGTTTGAAACCCTGAATTTCACAACAAAGACCGATACTGCATCAGTTCTACATGAAGCAATTGAGTACATCAAGTTTCTTCACGATCAAGTTCGTGTTTTGAGTACTCCATATATGGAAATGGGCGAGCAGGAGCATGATGGCGTGCAGCTTGTTAAGGAAGAATTGGAAGAGAATAAGAAACAAGATCTAACAAGTAGAGGACTTTGTCTGGTGCCAATTCCAAGTTCAGTTGCATTAGCAAATGGTAACACACTTGATTTCTGGTCGCCCACTTTTGGAGGAACCTTTAGGTAA

Protein sequence

MDDEFPPGICGRKLWDTTKITFPPAAATPSPCSVSDSTFLIDPTVRTPSNWNQNFLGDDGQRVDTTLMVDYDHQETNASEEPQNPSIFNADHDSMFLMGQTHSNFYDNIVTTTSQGLPMAYPFGMISNGYTPTLLPSSLDQPKQFLVNNRTISNSCRPMFETLNFTTKTDTASVLHEAIEYIKFLHDQVRVLSTPYMEMGEQEHDGVQLVKEELEENKKQDLTSRGLCLVPIPSSVALANGNTLDFWSPTFGGTFR

Homology

[Close]

BLAST of Cp4.1LG20g03900 vs. ExPASy Swiss-Prot
Match: Q94JL3 (Transcription factor bHLH112 OS=Arabidopsis thaliana OX=3702 GN=BHLH112 PE=1 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 3.4e-21
Identity = 58/125 (46.40%), Postives = 76/125 (60.80%), Query Frame = 0


Query: 131 TPTLLPSSLDQPKQFLVNNRTISNSCRPMFETLNFTTKTDTASVLHEAIEYIKFLHDQVR 190
           TP+ LP+       F V    + +    + + ++   KTDTASVL EAIEYIKFLHDQV 
Sbjct: 272 TPSPLPT-------FKVRKENLRDQITSLQQLVSPFGKTDTASVLQEAIEYIKFLHDQVT 331

Query: 191 VLSTPYMEMG--EQEHDGVQLVKEELEENKKQDLTSRGLCLVPIPSSVALANGNTLDFWS 250
           VLSTPYM+ G   Q+   +    +  +EN+  +L   GLCLVPI S+  +AN  T DFW+
Sbjct: 332 VLSTPYMKQGASNQQQQQISGKSKSQDENENHELRGHGLCLVPISSTFPVANETTADFWT 389

Query: 251 PTFGG 254
           PTFGG
Sbjct: 392 PTFGG 389

[Close]

BLAST of Cp4.1LG20g03900 vs. ExPASy Swiss-Prot
Match: Q8GXT3 (Transcription factor bHLH123 OS=Arabidopsis thaliana OX=3702 GN=BHLH123 PE=1 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 1.7e-20
Identity = 51/89 (57.30%), Postives = 61/89 (68.54%), Query Frame = 0


Query: 168 KTDTASVLHEAIEYIKFLHDQVRVLSTPYMEMGEQEHDGVQLVKEELEENKKQDLTSRGL 227
           KTD ASVL EAIEYIKFLH QV  LS PYM+ G            ELE +++ DL SRGL
Sbjct: 366 KTDAASVLSEAIEYIKFLHQQVSALSNPYMKSGASLQHQQSDHSTELEVSEEPDLRSRGL 425

Query: 228 CLVPIPSSVALANGNTLDFWSPTFGGTFR 257
           CLVP+ S+  + +  T+DFW+PTFGGTFR
Sbjct: 426 CLVPVSSTFPVTHDTTVDFWTPTFGGTFR 454

[Close]

BLAST of Cp4.1LG20g03900 vs. ExPASy Swiss-Prot
Match: Q9LT67 (Transcription factor bHLH113 OS=Arabidopsis thaliana OX=3702 GN=BHLH113 PE=2 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 4.7e-15
Identity = 46/88 (52.27%), Postives = 58/88 (65.91%), Query Frame = 0


Query: 168 KTDTASVLHEAIEYIKFLHDQVRVLSTPYMEMGEQEHDGVQLVKEELEENKKQDLTSRGL 227
           KTD ASVLHEA+ YIKFL DQ++VL +PY+       DG  +  + +   K +DL SRGL
Sbjct: 176 KTDAASVLHEAMGYIKFLQDQIQVLCSPYLI--NHSLDGGVVTGDVMAAMKAKDLRSRGL 235

Query: 228 CLVPIPSSVALANGNTLDFWSP-TFGGT 255
           CLVP+ S+V + N N  DFWSP T G T
Sbjct: 236 CLVPVSSTVHVENSNGADFWSPATMGHT 261

[Close]

BLAST of Cp4.1LG20g03900 vs. ExPASy Swiss-Prot
Match: Q9FYJ6 (Transcription factor bHLH111 OS=Arabidopsis thaliana OX=3702 GN=BHLH111 PE=2 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 3.8e-12
Identity = 41/90 (45.56%), Postives = 57/90 (63.33%), Query Frame = 0


Query: 168 KTDTASVLHEAIEYIKFLHDQVRVLSTPYMEMGEQEHDGVQLVKEELEEN--KKQDLTSR 227
           KTDTASVL EAI YI F  +QV++LSTPYM+    +       +E+  +   K  DL SR
Sbjct: 227 KTDTASVLQEAITYINFYQEQVKLLSTPYMKNSSMKDPWGGWDREDHNKRGPKHLDLRSR 286

Query: 228 GLCLVPIP-SSVALANGNTLDFWSPTFGGT 255
           GLCLVPI  + +A  + +  D+W+PT+ G+
Sbjct: 287 GLCLVPISYTPIAYRDNSATDYWNPTYRGS 316

[Close]

BLAST of Cp4.1LG20g03900 vs. ExPASy Swiss-Prot
Match: Q7XJU2 (Transcription factor bHLH153 OS=Arabidopsis thaliana OX=3702 GN=BHLH153 PE=1 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 3.8e-12
Identity = 39/82 (47.56%), Postives = 54/82 (65.85%), Query Frame = 0


Query: 168 KTDTASVLHEAIEYIKFLHDQVRVLSTPYMEMGEQEHDGVQLVKEELEENKKQDLTSRGL 227
           KTDTASVL +A+ YI+FLH+QV+VLS PY++            +EELE+     L +RGL
Sbjct: 59  KTDTASVLLDAMHYIEFLHEQVKVLSAPYLQTVP------DATQEELEQ---YSLRNRGL 118

Query: 228 CLVPIPSSVALANGNTLDFWSP 250
           CLVP+ ++V +A  N  D W+P
Sbjct: 119 CLVPMENTVGVAQSNGADIWAP 131

[Close]

BLAST of Cp4.1LG20g03900 vs. NCBI nr
Match: XP_023519613.1 (transcription factor bHLH112-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 499 bits (1286), Expect = 4.40e-177
Identity = 256/319 (80.25%), Postives = 256/319 (80.25%), Query Frame = 0


Query: 1   MDDEFPPGICGRKLWDTTKITFPPAAATPSPCSVSDSTFLIDPTVRTPSNWNQNFLGDDG 60
           MDDEFPPGICGRKLWDTTKITFPPAAATPSPCSVSDSTFLIDPTVRTPSNWNQNFLGDDG
Sbjct: 1   MDDEFPPGICGRKLWDTTKITFPPAAATPSPCSVSDSTFLIDPTVRTPSNWNQNFLGDDG 60

Query: 61  QRVDTTLMVDYDHQETNASEEPQNPSIFNADHDSMFLMGQTHSNFYDNIVTTTSQGLPMA 120
           QRVDTTLMVDYDHQETNASEEPQNPSIFNADHDSMFLMGQTHSNFYDNIVTTTSQGLPMA
Sbjct: 61  QRVDTTLMVDYDHQETNASEEPQNPSIFNADHDSMFLMGQTHSNFYDNIVTTTSQGLPMA 120

Query: 121 YPFGMISNGYTPTLLPSSLDQPKQFLVNNRTISNSCRPMFETLNFTTK------------ 180
           YPFGMISNGYTPTLLPSSLDQPKQFLVNNRTISNSCRPMFETLNFTTK            
Sbjct: 121 YPFGMISNGYTPTLLPSSLDQPKQFLVNNRTISNSCRPMFETLNFTTKLISCEEVVRDSS 180

Query: 181 ---------------------------------------------------TDTASVLHE 240
                                                              TDTASVLHE
Sbjct: 181 RVETKNKSNEITTIKRARNDMPSSLPTFKVRKEKLGDKITALQQLVSPFGKTDTASVLHE 240

Query: 241 AIEYIKFLHDQVRVLSTPYMEMGEQEHDGVQLVKEELEENKKQDLTSRGLCLVPIPSSVA 256
           AIEYIKFLHDQVRVLSTPYMEMGEQEHDGVQLVKEELEENKKQDLTSRGLCLVPIPSSVA
Sbjct: 241 AIEYIKFLHDQVRVLSTPYMEMGEQEHDGVQLVKEELEENKKQDLTSRGLCLVPIPSSVA 300

[Close]

BLAST of Cp4.1LG20g03900 vs. NCBI nr
Match: KAG6584048.1 (Transcription factor basic helix-loop-helix 123, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 479 bits (1233), Expect = 7.21e-169
Identity = 249/328 (75.91%), Postives = 255/328 (77.74%), Query Frame = 0


Query: 1   MDDEFPPGICGRKLWDTTKITFPPAAATPSPCSVSDSTFLIDPTVRTPSNWNQNFLGDDG 60
           MDDEFPPGICGRKLWDTTKITFPPAAATPSPCSVSDSTFLIDPTVRTPSNWNQNFLGDDG
Sbjct: 1   MDDEFPPGICGRKLWDTTKITFPPAAATPSPCSVSDSTFLIDPTVRTPSNWNQNFLGDDG 60

Query: 61  QRVDTTLMVDYDHQETNASEEPQNPSIFNADHDSMFLMGQTHSNFYDNIVTTTSQGLPMA 120
           QRVDTTLMVDY+HQETNASEEPQNPSIFNADHDS+FLMG+THSNFYDNIVTTTSQGLPMA
Sbjct: 61  QRVDTTLMVDYNHQETNASEEPQNPSIFNADHDSVFLMGRTHSNFYDNIVTTTSQGLPMA 120

Query: 121 YPFGMISNGYTPTLLPSSLDQPKQFLVNNRTISNSCRPMFETLNFTTK------------ 180
           YPFGMISNGYTPTLLPSSLDQPKQFLVNNRTISNSC+PMFETLNFTTK            
Sbjct: 121 YPFGMISNGYTPTLLPSSLDQPKQFLVNNRTISNSCQPMFETLNFTTKLISCDEVVRDSS 180

Query: 181 ---------------------------------------------------TDTASVLHE 240
                                                              TDTASVLHE
Sbjct: 181 RVETKNKSNEITTIKRARNDMPSSLPTFKVRKEKLGDKITALQQLVSPFGKTDTASVLHE 240

Query: 241 AIEYIKFLHDQVRVLSTPYMEMGEQE---------HDGVQLVKEELEENKKQDLTSRGLC 256
           AIEYIKFLHDQVRVLSTPYMEMGEQE         +DG QLVKEELEENK+QDLTSRGLC
Sbjct: 241 AIEYIKFLHDQVRVLSTPYMEMGEQEQEQQQQVTNYDGGQLVKEELEENKRQDLTSRGLC 300

[Close]

BLAST of Cp4.1LG20g03900 vs. NCBI nr
Match: KAG7019656.1 (Transcription factor bHLH, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 472 bits (1214), Expect = 5.25e-166
Identity = 248/328 (75.61%), Postives = 253/328 (77.13%), Query Frame = 0


Query: 1   MDDEFPPGICGRKLWDTTKITFPPAAATPSPCSVSDSTFLIDPTVRTPSNWNQNFLGDDG 60
           MDDEFPPGICGRKLWDTTKITFPPAAATPSPCSVSDSTFLIDPTVRTPSNWNQNFLGDDG
Sbjct: 1   MDDEFPPGICGRKLWDTTKITFPPAAATPSPCSVSDSTFLIDPTVRTPSNWNQNFLGDDG 60

Query: 61  QRVDTTLMVDYDHQETNASEEPQNPSIFNADHDSMFLMGQTHSNFYDNIVTTTSQGLPMA 120
           QRVDTTLMVDY+HQETNASEEPQNPSIFNADHDS+FLMG+THSNFYDNIVTTTSQGLPMA
Sbjct: 61  QRVDTTLMVDYNHQETNASEEPQNPSIFNADHDSVFLMGRTHSNFYDNIVTTTSQGLPMA 120

Query: 121 YPFGMISNGYTPTLLPSSLDQPKQFLVNNRTISNSCRPMFETLNFTTK------------ 180
           YPFGMISNGYTPTLLPSSLDQPKQFLVNNRTISNSC+PMFETLNFTTK            
Sbjct: 121 YPFGMISNGYTPTLLPSSLDQPKQFLVNNRTISNSCQPMFETLNFTTKLISCEEVVRDSS 180

Query: 181 ---------------------------------------------------TDTASVLHE 240
                                                              TDTASVLHE
Sbjct: 181 RVETKNKSNEITTIKRARNDMPSSLPTFKVRKEKLGDKITALQQLVSPFGKTDTASVLHE 240

Query: 241 AIEYIKFLHDQVRVLSTPYMEMGEQE---------HDGVQLVKEELEENKKQDLTSRGLC 256
           AIEYIKFLHDQV  LSTPYMEMGEQE         +DG QLVKEELEENKKQDLTSRGLC
Sbjct: 241 AIEYIKFLHDQV--LSTPYMEMGEQEQEQQKQVTNYDGGQLVKEELEENKKQDLTSRGLC 300

[Close]

BLAST of Cp4.1LG20g03900 vs. NCBI nr
Match: XP_022927127.1 (transcription factor bHLH112-like [Cucurbita moschata])

HSP 1 Score: 468 bits (1205), Expect = 1.33e-164
Identity = 246/328 (75.00%), Postives = 249/328 (75.91%), Query Frame = 0


Query: 1   MDDEFPPGICGRKLWDTTKITFPPAAATPSPCSVSDSTFLIDPTVRTPSNWNQNFLGDDG 60
           MDDEFPPGICGRKLWDTTKI F PAAATPS CSVSDSTFLIDPTVRTPSNWNQNFLGDDG
Sbjct: 1   MDDEFPPGICGRKLWDTTKIPFSPAAATPSSCSVSDSTFLIDPTVRTPSNWNQNFLGDDG 60

Query: 61  QRVDTTLMVDYDHQETNASEEPQNPSIFNADHDSMFLMGQTHSNFYDNIVTTTSQGLPMA 120
           QRVDTTLMVDYDHQETNASEEPQNPSIFNADHD MFLMGQTHSNFYDNIVTTTSQ LPMA
Sbjct: 61  QRVDTTLMVDYDHQETNASEEPQNPSIFNADHDCMFLMGQTHSNFYDNIVTTTSQRLPMA 120

Query: 121 YPFGMISNGYTPTLLPSSLDQPKQFLVNNRTISNSCRPMFETLNFTTK------------ 180
           YPFGMISNGYTPTLLPSSLDQPKQFLVNNRTI++SC PMFETLNFTTK            
Sbjct: 121 YPFGMISNGYTPTLLPSSLDQPKQFLVNNRTINSSCHPMFETLNFTTKLISYDEVVRDSS 180

Query: 181 ---------------------------------------------------TDTASVLHE 240
                                                              TDTASVLHE
Sbjct: 181 RVEMKNKSNEITTIKRARNDMPSSLPTFKVRKEKLGDKITALQQLVSPFGKTDTASVLHE 240

Query: 241 AIEYIKFLHDQVRVLSTPYMEMGEQE---------HDGVQLVKEELEENKKQDLTSRGLC 256
           AIEYIKFLHDQVRVLSTPYMEMGEQE         +DG QLVKEELEENKKQDLTSRGLC
Sbjct: 241 AIEYIKFLHDQVRVLSTPYMEMGEQEQEQEQQVTNYDGGQLVKEELEENKKQDLTSRGLC 300

[Close]

BLAST of Cp4.1LG20g03900 vs. NCBI nr
Match: XP_023001290.1 (transcription factor bHLH112-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 458 bits (1179), Expect = 1.16e-160
Identity = 239/327 (73.09%), Postives = 249/327 (76.15%), Query Frame = 0


Query: 1   MDDEFPPGICGRKLWDTTKITFPPAAATPSPCSVSDSTFLIDPTVRTPSNWNQNFLGDDG 60
           MDDEFPPGICGR+LWDTTK  F PAAA PSPCS+ D+TFLIDPTVRTPSNWNQNFLGDDG
Sbjct: 1   MDDEFPPGICGRELWDTTKTLFSPAAANPSPCSIGDTTFLIDPTVRTPSNWNQNFLGDDG 60

Query: 61  QRVDTTLMVDYDHQETNASEEPQNPSIFNADHDSMFLMGQTHSNFYDNIVTTTSQGLPMA 120
           QRVDTTLMVDYDHQETNASEEPQNPSIFNADHDSMFLMGQTHSNFYDNIVTTTSQGLPMA
Sbjct: 61  QRVDTTLMVDYDHQETNASEEPQNPSIFNADHDSMFLMGQTHSNFYDNIVTTTSQGLPMA 120

Query: 121 YPFGMISNGYTPTLLPSSLDQPKQFLVNNRTISNSCRPMFETLNFTTK------------ 180
           YPFGMISNGYTPTLLPSSLDQPKQFLVNNRT ++SC+PMFETLNFTTK            
Sbjct: 121 YPFGMISNGYTPTLLPSSLDQPKQFLVNNRTNNSSCQPMFETLNFTTKLISWDEVVRDSS 180

Query: 181 ---------------------------------------------------TDTASVLHE 240
                                                              TDTASVLHE
Sbjct: 181 RVEMKNKSNEITTIKRPRNDMSSSLPTFKVRKEKLGDKITALQQLVSPFGKTDTASVLHE 240

Query: 241 AIEYIKFLHDQVRVLSTPYMEMGEQE-------HDGVQLVKEELEENKKQDLTSRGLCLV 256
           AIEYIKFLHDQVRVLSTPYMEMGEQE       +DG QL+KEELEENKKQDLTSRGLCLV
Sbjct: 241 AIEYIKFLHDQVRVLSTPYMEMGEQEQEQQVRNYDGGQLLKEELEENKKQDLTSRGLCLV 300

[Close]

BLAST of Cp4.1LG20g03900 vs. ExPASy TrEMBL
Match: A0A6J1EG97 (transcription factor bHLH112-like OS=Cucurbita moschata OX=3662 GN=LOC111434066 PE=4 SV=1)

HSP 1 Score: 468 bits (1205), Expect = 6.42e-165
Identity = 246/328 (75.00%), Postives = 249/328 (75.91%), Query Frame = 0


Query: 1   MDDEFPPGICGRKLWDTTKITFPPAAATPSPCSVSDSTFLIDPTVRTPSNWNQNFLGDDG 60
           MDDEFPPGICGRKLWDTTKI F PAAATPS CSVSDSTFLIDPTVRTPSNWNQNFLGDDG
Sbjct: 1   MDDEFPPGICGRKLWDTTKIPFSPAAATPSSCSVSDSTFLIDPTVRTPSNWNQNFLGDDG 60

Query: 61  QRVDTTLMVDYDHQETNASEEPQNPSIFNADHDSMFLMGQTHSNFYDNIVTTTSQGLPMA 120
           QRVDTTLMVDYDHQETNASEEPQNPSIFNADHD MFLMGQTHSNFYDNIVTTTSQ LPMA
Sbjct: 61  QRVDTTLMVDYDHQETNASEEPQNPSIFNADHDCMFLMGQTHSNFYDNIVTTTSQRLPMA 120

Query: 121 YPFGMISNGYTPTLLPSSLDQPKQFLVNNRTISNSCRPMFETLNFTTK------------ 180
           YPFGMISNGYTPTLLPSSLDQPKQFLVNNRTI++SC PMFETLNFTTK            
Sbjct: 121 YPFGMISNGYTPTLLPSSLDQPKQFLVNNRTINSSCHPMFETLNFTTKLISYDEVVRDSS 180

Query: 181 ---------------------------------------------------TDTASVLHE 240
                                                              TDTASVLHE
Sbjct: 181 RVEMKNKSNEITTIKRARNDMPSSLPTFKVRKEKLGDKITALQQLVSPFGKTDTASVLHE 240

Query: 241 AIEYIKFLHDQVRVLSTPYMEMGEQE---------HDGVQLVKEELEENKKQDLTSRGLC 256
           AIEYIKFLHDQVRVLSTPYMEMGEQE         +DG QLVKEELEENKKQDLTSRGLC
Sbjct: 241 AIEYIKFLHDQVRVLSTPYMEMGEQEQEQEQQVTNYDGGQLVKEELEENKKQDLTSRGLC 300

[Close]

BLAST of Cp4.1LG20g03900 vs. ExPASy TrEMBL
Match: A0A6J1KKS6 (transcription factor bHLH112-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111495465 PE=4 SV=1)

HSP 1 Score: 458 bits (1179), Expect = 5.63e-161
Identity = 239/327 (73.09%), Postives = 249/327 (76.15%), Query Frame = 0


Query: 1   MDDEFPPGICGRKLWDTTKITFPPAAATPSPCSVSDSTFLIDPTVRTPSNWNQNFLGDDG 60
           MDDEFPPGICGR+LWDTTK  F PAAA PSPCS+ D+TFLIDPTVRTPSNWNQNFLGDDG
Sbjct: 1   MDDEFPPGICGRELWDTTKTLFSPAAANPSPCSIGDTTFLIDPTVRTPSNWNQNFLGDDG 60

Query: 61  QRVDTTLMVDYDHQETNASEEPQNPSIFNADHDSMFLMGQTHSNFYDNIVTTTSQGLPMA 120
           QRVDTTLMVDYDHQETNASEEPQNPSIFNADHDSMFLMGQTHSNFYDNIVTTTSQGLPMA
Sbjct: 61  QRVDTTLMVDYDHQETNASEEPQNPSIFNADHDSMFLMGQTHSNFYDNIVTTTSQGLPMA 120

Query: 121 YPFGMISNGYTPTLLPSSLDQPKQFLVNNRTISNSCRPMFETLNFTTK------------ 180
           YPFGMISNGYTPTLLPSSLDQPKQFLVNNRT ++SC+PMFETLNFTTK            
Sbjct: 121 YPFGMISNGYTPTLLPSSLDQPKQFLVNNRTNNSSCQPMFETLNFTTKLISWDEVVRDSS 180

Query: 181 ---------------------------------------------------TDTASVLHE 240
                                                              TDTASVLHE
Sbjct: 181 RVEMKNKSNEITTIKRPRNDMSSSLPTFKVRKEKLGDKITALQQLVSPFGKTDTASVLHE 240

Query: 241 AIEYIKFLHDQVRVLSTPYMEMGEQE-------HDGVQLVKEELEENKKQDLTSRGLCLV 256
           AIEYIKFLHDQVRVLSTPYMEMGEQE       +DG QL+KEELEENKKQDLTSRGLCLV
Sbjct: 241 AIEYIKFLHDQVRVLSTPYMEMGEQEQEQQVRNYDGGQLLKEELEENKKQDLTSRGLCLV 300

[Close]

BLAST of Cp4.1LG20g03900 vs. ExPASy TrEMBL
Match: A0A6J1KI75 (transcription factor bHLH112-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111495465 PE=4 SV=1)

HSP 1 Score: 450 bits (1157), Expect = 1.17e-157
Identity = 237/327 (72.48%), Postives = 247/327 (75.54%), Query Frame = 0


Query: 1   MDDEFPPGICGRKLWDTTKITFPPAAATPSPCSVSDSTFLIDPTVRTPSNWNQNFLGDDG 60
           MDDEFPPGICGR+LWDTTK  F PAAA PSPCS+ D+TFLIDPTVRTPSNWNQNFLGDDG
Sbjct: 1   MDDEFPPGICGRELWDTTKTLFSPAAANPSPCSIGDTTFLIDPTVRTPSNWNQNFLGDDG 60

Query: 61  QRVDTTLMVDYDHQETNASEEPQNPSIFNADHDSMFLMGQTHSNFYDNIVTTTSQGLPMA 120
           QRVDTTLMVDYDHQETNASEEPQNPSIFNADHDSMFLMGQTHSNFYDNIVTTTSQGLPMA
Sbjct: 61  QRVDTTLMVDYDHQETNASEEPQNPSIFNADHDSMFLMGQTHSNFYDNIVTTTSQGLPMA 120

Query: 121 YPFGMISNGYTPTLLPSSLDQPKQFLVNNRTISNSCRPMFETLNFTTK------------ 180
           YPFGMISNGYTPTLLPSSLDQPKQFLVNNRT ++SC+PMFETLNFTTK            
Sbjct: 121 YPFGMISNGYTPTLLPSSLDQPKQFLVNNRTNNSSCQPMFETLNFTTKLISWDEVVRDSS 180

Query: 181 ---------------------------------------------------TDTASVLHE 240
                                                              TDTASVLHE
Sbjct: 181 RVEMKNKSNEITTIKRPRNDMSSSLPTFKVRKEKLGDKITALQQLVSPFGKTDTASVLHE 240

Query: 241 AIEYIKFLHDQVRVLSTPYMEMGEQE-------HDGVQLVKEELEENKKQDLTSRGLCLV 256
           AIEYIKFLHDQV  LSTPYMEMGEQE       +DG QL+KEELEENKKQDLTSRGLCLV
Sbjct: 241 AIEYIKFLHDQV--LSTPYMEMGEQEQEQQVRNYDGGQLLKEELEENKKQDLTSRGLCLV 300

[Close]

BLAST of Cp4.1LG20g03900 vs. ExPASy TrEMBL
Match: A0A1S3B415 (transcription factor bHLH133-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103485775 PE=4 SV=1)

HSP 1 Score: 275 bits (702), Expect = 1.20e-88
Identity = 175/328 (53.35%), Postives = 206/328 (62.80%), Query Frame = 0


Query: 1   MDDEFPPGICGRKLWDTTKITFPPAAATPSPCSVSDSTFLIDPTVRTPSNWNQNFLG-DD 60
           M DEFP     R L       F  A    SPCSV +STFLID T+ + SNWNQ+F G DD
Sbjct: 1   MADEFP----ARSL-------FSAAVTNTSPCSVGNSTFLIDSTITSTSNWNQSFRGWDD 60

Query: 61  GQRVDTTLMVD--------YDHQE-TNASEEPQNPSIF----NADHDSMFLMGQ-----T 120
           GQRVDTT++VD        YD QE T+ SE  QNP+ F    + DHDS+FLM Q     T
Sbjct: 61  GQRVDTTVVVDSMTVTKLNYDDQEITSGSEGQQNPTSFFKTTDDDHDSLFLMEQPYNIQT 120

Query: 121 HSNFYDNIVTTTS-QGLPMAYPFGMISNGYTPTLLP-SSLDQPKQFLVNNRTISN----- 180
            +NFY N+VTTT+ QGLPMA+PF  IS GYTPTLLP SSL+QP QF+VNNRTI+N     
Sbjct: 121 ATNFYHNVVTTTTRQGLPMAFPFEAISIGYTPTLLPCSSLNQPTQFVVNNRTINNCCSFT 180

Query: 181 ------SCRPMFET-------LNFTT------------------------------KTDT 240
                 SC PMF+T       LNF+                               KTDT
Sbjct: 181 NSDELLSCSPMFQTHLLHPPPLNFSNGITPKCPTKVRKEKLGDKITALQQLVSPFGKTDT 240

Query: 241 ASVLHEAIEYIKFLHDQVRVLSTPYMEMGEQEHDGVQLVKEELE---ENKKQDLTSRGLC 256
           ASVLHEAIEYIKFLH+Q+RVLSTPYME+G+   +   +++EEL+   EN K+DL SRGLC
Sbjct: 241 ASVLHEAIEYIKFLHNQIRVLSTPYMEIGDHNQEPKIIIEEELKNTNENMKEDLRSRGLC 300

[Close]

BLAST of Cp4.1LG20g03900 vs. ExPASy TrEMBL
Match: A0A1S3B4S8 (transcription factor bHLH112-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103485775 PE=4 SV=1)

HSP 1 Score: 258 bits (660), Expect = 9.96e-82
Identity = 175/370 (47.30%), Postives = 206/370 (55.68%), Query Frame = 0


Query: 1   MDDEFPPGICGRKLWDTTKITFPPAAATPSPCSVSDSTFLIDPTVRTPSNWNQNFLG-DD 60
           M DEFP     R L       F  A    SPCSV +STFLID T+ + SNWNQ+F G DD
Sbjct: 1   MADEFP----ARSL-------FSAAVTNTSPCSVGNSTFLIDSTITSTSNWNQSFRGWDD 60

Query: 61  GQRVDTTLMVD--------YDHQE-TNASEEPQNPSIF----NADHDSMFLMGQ-----T 120
           GQRVDTT++VD        YD QE T+ SE  QNP+ F    + DHDS+FLM Q     T
Sbjct: 61  GQRVDTTVVVDSMTVTKLNYDDQEITSGSEGQQNPTSFFKTTDDDHDSLFLMEQPYNIQT 120

Query: 121 HSNFYDNIVTTTS-QGLPMAYPFGMISNGYTPTLLP-SSLDQPKQFLVNNRTISN----- 180
            +NFY N+VTTT+ QGLPMA+PF  IS GYTPTLLP SSL+QP QF+VNNRTI+N     
Sbjct: 121 ATNFYHNVVTTTTRQGLPMAFPFEAISIGYTPTLLPCSSLNQPTQFVVNNRTINNCCSFT 180

Query: 181 ------SCRPMFET-------LNFTT---------------------------------- 240
                 SC PMF+T       LNF+                                   
Sbjct: 181 NSDELLSCSPMFQTHLLHPPPLNFSNGITPKCPTKLMGCDEVVEDWSRVERENESKEIAI 240

Query: 241 --------------------------------------KTDTASVLHEAIEYIKFLHDQV 256
                                                 KTDTASVLHEAIEYIKFLH+Q+
Sbjct: 241 IKRPRSDNSSSPLPTFKVRKEKLGDKITALQQLVSPFGKTDTASVLHEAIEYIKFLHNQI 300

[Close]

BLAST of Cp4.1LG20g03900 vs. TAIR 10
Match: AT1G61660.4 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 104.0 bits (258), Expect = 1.8e-22
Identity = 53/90 (58.89%), Postives = 63/90 (70.00%), Query Frame = 0


Query: 166 TTKTDTASVLHEAIEYIKFLHDQVRVLSTPYMEMG--EQEHDGVQLVKEELEENKKQDLT 225
           T KTDTASVL EAIEYIKFLHDQV VLSTPYM+ G   Q+   +    +  +EN+  +L 
Sbjct: 278 TFKTDTASVLQEAIEYIKFLHDQVTVLSTPYMKQGASNQQQQQISGKSKSQDENENHELR 337

Query: 226 SRGLCLVPIPSSVALANGNTLDFWSPTFGG 254
             GLCLVPI S+  +AN  T DFW+PTFGG
Sbjct: 338 GHGLCLVPISSTFPVANETTADFWTPTFGG 367

[Close]

BLAST of Cp4.1LG20g03900 vs. TAIR 10
Match: AT1G61660.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 103.6 bits (257), Expect = 2.4e-22
Identity = 58/125 (46.40%), Postives = 76/125 (60.80%), Query Frame = 0


Query: 131 TPTLLPSSLDQPKQFLVNNRTISNSCRPMFETLNFTTKTDTASVLHEAIEYIKFLHDQVR 190
           TP+ LP+       F V    + +    + + ++   KTDTASVL EAIEYIKFLHDQV 
Sbjct: 272 TPSPLPT-------FKVRKENLRDQITSLQQLVSPFGKTDTASVLQEAIEYIKFLHDQVT 331

Query: 191 VLSTPYMEMG--EQEHDGVQLVKEELEENKKQDLTSRGLCLVPIPSSVALANGNTLDFWS 250
           VLSTPYM+ G   Q+   +    +  +EN+  +L   GLCLVPI S+  +AN  T DFW+
Sbjct: 332 VLSTPYMKQGASNQQQQQISGKSKSQDENENHELRGHGLCLVPISSTFPVANETTADFWT 389

Query: 251 PTFGG 254
           PTFGG
Sbjct: 392 PTFGG 389

[Close]

BLAST of Cp4.1LG20g03900 vs. TAIR 10
Match: AT1G61660.3 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 103.6 bits (257), Expect = 2.4e-22
Identity = 58/125 (46.40%), Postives = 76/125 (60.80%), Query Frame = 0


Query: 131 TPTLLPSSLDQPKQFLVNNRTISNSCRPMFETLNFTTKTDTASVLHEAIEYIKFLHDQVR 190
           TP+ LP+       F V    + +    + + ++   KTDTASVL EAIEYIKFLHDQV 
Sbjct: 269 TPSPLPT-------FKVRKENLRDQITSLQQLVSPFGKTDTASVLQEAIEYIKFLHDQVT 328

Query: 191 VLSTPYMEMG--EQEHDGVQLVKEELEENKKQDLTSRGLCLVPIPSSVALANGNTLDFWS 250
           VLSTPYM+ G   Q+   +    +  +EN+  +L   GLCLVPI S+  +AN  T DFW+
Sbjct: 329 VLSTPYMKQGASNQQQQQISGKSKSQDENENHELRGHGLCLVPISSTFPVANETTADFWT 386

Query: 251 PTFGG 254
           PTFGG
Sbjct: 389 PTFGG 386

[Close]

BLAST of Cp4.1LG20g03900 vs. TAIR 10
Match: AT3G20640.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 101.3 bits (251), Expect = 1.2e-21
Identity = 51/89 (57.30%), Postives = 61/89 (68.54%), Query Frame = 0


Query: 168 KTDTASVLHEAIEYIKFLHDQVRVLSTPYMEMGEQEHDGVQLVKEELEENKKQDLTSRGL 227
           KTD ASVL EAIEYIKFLH QV  LS PYM+ G            ELE +++ DL SRGL
Sbjct: 366 KTDAASVLSEAIEYIKFLHQQVSALSNPYMKSGASLQHQQSDHSTELEVSEEPDLRSRGL 425

Query: 228 CLVPIPSSVALANGNTLDFWSPTFGGTFR 257
           CLVP+ S+  + +  T+DFW+PTFGGTFR
Sbjct: 426 CLVPVSSTFPVTHDTTVDFWTPTFGGTFR 454

[Close]

BLAST of Cp4.1LG20g03900 vs. TAIR 10
Match: AT3G19500.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 83.2 bits (204), Expect = 3.4e-16
Identity = 46/88 (52.27%), Postives = 58/88 (65.91%), Query Frame = 0


Query: 168 KTDTASVLHEAIEYIKFLHDQVRVLSTPYMEMGEQEHDGVQLVKEELEENKKQDLTSRGL 227
           KTD ASVLHEA+ YIKFL DQ++VL +PY+       DG  +  + +   K +DL SRGL
Sbjct: 176 KTDAASVLHEAMGYIKFLQDQIQVLCSPYLI--NHSLDGGVVTGDVMAAMKAKDLRSRGL 235

Query: 228 CLVPIPSSVALANGNTLDFWSP-TFGGT 255
           CLVP+ S+V + N N  DFWSP T G T
Sbjct: 236 CLVPVSSTVHVENSNGADFWSPATMGHT 261

The following BLAST results are available for this feature:

BLAST of Cp4.1LG20g03900 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94JL3	3.4e-21	46.40	Transcription factor bHLH112 OS=Arabidopsis thaliana OX=3702 GN=BHLH112 PE=1 SV=...	[more]
Q8GXT3	1.7e-20	57.30	Transcription factor bHLH123 OS=Arabidopsis thaliana OX=3702 GN=BHLH123 PE=1 SV=...	[more]
Q9LT67	4.7e-15	52.27	Transcription factor bHLH113 OS=Arabidopsis thaliana OX=3702 GN=BHLH113 PE=2 SV=...	[more]
Q9FYJ6	3.8e-12	45.56	Transcription factor bHLH111 OS=Arabidopsis thaliana OX=3702 GN=BHLH111 PE=2 SV=...	[more]
Q7XJU2	3.8e-12	47.56	Transcription factor bHLH153 OS=Arabidopsis thaliana OX=3702 GN=BHLH153 PE=1 SV=...	[more]

BLAST of Cp4.1LG20g03900 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023519613.1	4.40e-177	80.25	transcription factor bHLH112-like [Cucurbita pepo subsp. pepo]	[more]
KAG6584048.1	7.21e-169	75.91	Transcription factor basic helix-loop-helix 123, partial [Cucurbita argyrosperma...	[more]
KAG7019656.1	5.25e-166	75.61	Transcription factor bHLH, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022927127.1	1.33e-164	75.00	transcription factor bHLH112-like [Cucurbita moschata]	[more]
XP_023001290.1	1.16e-160	73.09	transcription factor bHLH112-like isoform X1 [Cucurbita maxima]	[more]

BLAST of Cp4.1LG20g03900 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EG97	6.42e-165	75.00	transcription factor bHLH112-like OS=Cucurbita moschata OX=3662 GN=LOC111434066 ...	[more]
A0A6J1KKS6	5.63e-161	73.09	transcription factor bHLH112-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC1...	[more]
A0A6J1KI75	1.17e-157	72.48	transcription factor bHLH112-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC1...	[more]
A0A1S3B415	1.20e-88	53.35	transcription factor bHLH133-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC10348...	[more]
A0A1S3B4S8	9.96e-82	47.30	transcription factor bHLH112-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC10348...	[more]

BLAST of Cp4.1LG20g03900 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G61660.4	1.8e-22	58.89	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT1G61660.1	2.4e-22	46.40	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT1G61660.3	2.4e-22	46.40	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT3G20640.1	1.2e-21	57.30	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT3G19500.1	3.4e-16	52.27	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 197..217
None	No IPR available	PANTHER	PTHR16223:SF253	TRANSCRIPTION FACTOR BHLH103	coord: 168..238
None	No IPR available	PANTHER	PTHR16223	TRANSCRIPTION FACTOR BHLH83-RELATED	coord: 168..238
None	No IPR available	CDD	cd11393	bHLH_AtbHLH_like	coord: 167..193 e-value: 9.80163E-11 score: 54.1095
IPR036638	Helix-loop-helix DNA-binding domain superfamily	SUPERFAMILY	47459	HLH, helix-loop-helix DNA-binding domain	coord: 164..200

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG20g03900.1	Cp4.1LG20g03900.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0046983	protein dimerization activity