Cp4.1LG20g03500 (gene) Cucurbita pepo (MU‐CU‐16) v4.1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGTCTTTGCCGGAGACGATTGGGGCTCCTTCAGTTCCAAGCACGGCCGTGGCCGCGGCGGAAACGCCTCAACCTCCAGCGGCGATCCAGAGAAATATAGACTACTTGGAGAGAAGCAAACGTCGTCGTGTCCACAGCCGCAAGTGAAAATCAAGATGACGAAGAGAGAGCTTGAGGATCTGGTGAAGAATCTGGAGATAGAAGGCTTGAGTCTAGAACAAGTAATTGGGCGGATGATGAACGATGAGGACGAATTTCAAGGTGAGCACCATCGCTCGTGGAGACCTTCTCTTCAAAGCATTCCAGAGTGA ATGGTCTTTGCCGGAGACGATTGGGGCTCCTTCAGTTCCAAGCACGGCCGTGGCCGCGGCGGAAACGCCTCAACCTCCAGCGGCGATCCAGAGAAATATAGACTACTTGGAGAGAAGCAAACGTCGTCGTGTCCACAGCCGCAAGTGAAAATCAAGATGACGAAGAGAGAGCTTGAGGATCTGGTGAAGAATCTGGAGATAGAAGGCTTGAGTCTAGAACAAGTAATTGGGCGGATGATGAACGATGAGGACGAATTTCAAGGTGAGCACCATCGCTCGTGGAGACCTTCTCTTCAAAGCATTCCAGAGTGA ATGGTCTTTGCCGGAGACGATTGGGGCTCCTTCAGTTCCAAGCACGGCCGTGGCCGCGGCGGAAACGCCTCAACCTCCAGCGGCGATCCAGAGAAATATAGACTACTTGGAGAGAAGCAAACGTCGTCGTGTCCACAGCCGCAAGTGAAAATCAAGATGACGAAGAGAGAGCTTGAGGATCTGGTGAAGAATCTGGAGATAGAAGGCTTGAGTCTAGAACAAGTAATTGGGCGGATGATGAACGATGAGGACGAATTTCAAGGTGAGCACCATCGCTCGTGGAGACCTTCTCTTCAAAGCATTCCAGAGTGA MVFAGDDWGSFSSKHGRGRGGNASTSSGDPEKYRLLGEKQTSSCPQPQVKIKMTKRELEDLVKNLEIEGLSLEQVIGRMMNDEDEFQGEHHRSWRPSLQSIPE Homology
BLAST of Cp4.1LG20g03500 vs. NCBI nr
Match: XP_023520212.1 (uncharacterized protein LOC111783515 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 206 bits (523), Expect = 1.31e-66 Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0
BLAST of Cp4.1LG20g03500 vs. NCBI nr
Match: XP_022933211.1 (uncharacterized protein LOC111440057 [Cucurbita moschata]) HSP 1 Score: 205 bits (522), Expect = 1.86e-66 Identity = 102/103 (99.03%), Postives = 103/103 (100.00%), Query Frame = 0
BLAST of Cp4.1LG20g03500 vs. NCBI nr
Match: KAG6584086.1 (hypothetical protein SDJN03_20018, partial [Cucurbita argyrosperma subsp. sororia] >KAG7019687.1 hypothetical protein SDJN02_18650, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 203 bits (516), Expect = 1.53e-65 Identity = 101/103 (98.06%), Postives = 102/103 (99.03%), Query Frame = 0
BLAST of Cp4.1LG20g03500 vs. NCBI nr
Match: XP_023001321.1 (uncharacterized protein LOC111495485 [Cucurbita maxima]) HSP 1 Score: 202 bits (513), Expect = 4.39e-65 Identity = 101/103 (98.06%), Postives = 101/103 (98.06%), Query Frame = 0
BLAST of Cp4.1LG20g03500 vs. NCBI nr
Match: XP_038895954.1 (uncharacterized protein LOC120084128 [Benincasa hispida]) HSP 1 Score: 175 bits (444), Expect = 1.61e-54 Identity = 88/104 (84.62%), Postives = 96/104 (92.31%), Query Frame = 0
BLAST of Cp4.1LG20g03500 vs. ExPASy TrEMBL
Match: A0A6J1EYG4 (uncharacterized protein LOC111440057 OS=Cucurbita moschata OX=3662 GN=LOC111440057 PE=4 SV=1) HSP 1 Score: 205 bits (522), Expect = 9.01e-67 Identity = 102/103 (99.03%), Postives = 103/103 (100.00%), Query Frame = 0
BLAST of Cp4.1LG20g03500 vs. ExPASy TrEMBL
Match: A0A6J1KIA5 (uncharacterized protein LOC111495485 OS=Cucurbita maxima OX=3661 GN=LOC111495485 PE=4 SV=1) HSP 1 Score: 202 bits (513), Expect = 2.13e-65 Identity = 101/103 (98.06%), Postives = 101/103 (98.06%), Query Frame = 0
BLAST of Cp4.1LG20g03500 vs. ExPASy TrEMBL
Match: A0A1S3BEX3 (uncharacterized protein LOC103489132 OS=Cucumis melo OX=3656 GN=LOC103489132 PE=4 SV=1) HSP 1 Score: 160 bits (405), Expect = 4.88e-49 Identity = 82/104 (78.85%), Postives = 93/104 (89.42%), Query Frame = 0
BLAST of Cp4.1LG20g03500 vs. ExPASy TrEMBL
Match: A0A5A7UTK3 (DUF4228 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G005800 PE=4 SV=1) HSP 1 Score: 160 bits (405), Expect = 6.87e-49 Identity = 82/104 (78.85%), Postives = 93/104 (89.42%), Query Frame = 0
BLAST of Cp4.1LG20g03500 vs. ExPASy TrEMBL
Match: A0A0A0LRL1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G063490 PE=4 SV=1) HSP 1 Score: 160 bits (404), Expect = 1.01e-48 Identity = 84/105 (80.00%), Postives = 91/105 (86.67%), Query Frame = 0
BLAST of Cp4.1LG20g03500 vs. TAIR 10
Match: AT4G21920.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G20340.1); Has 40 Blast hits to 40 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 62.0 bits (149), Expect = 3.2e-10 Identity = 40/115 (34.78%), Postives = 68/115 (59.13%), Query Frame = 0
BLAST of Cp4.1LG20g03500 vs. TAIR 10
Match: AT3G20340.1 (Expression of the gene is downregulated in the presence of paraquat, an inducer of photoxidative stress. ) HSP 1 Score: 49.3 bits (116), Expect = 2.2e-06 Identity = 32/106 (30.19%), Postives = 55/106 (51.89%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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