Cp4.1LG20g02840 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG20g02840
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Descriptionpentatricopeptide repeat-containing protein At3g22470, mitochondrial-like
LocationCp4.1LG20: 1573937 .. 1576172 (-)
RNA-Seq ExpressionCp4.1LG20g02840
SyntenyCp4.1LG20g02840
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGACGATAAGGCAACGGCTTCTTCCCCTCCACCGTCGTCCACTTCCACCGCAGCTCGTTCACGATCAAATTCCGGCCATTGGTACTCCATTTTCCTCTTCCTCCTCCTCCTCCGTTTATGATTCCGCAGCCAGTAAAATCAATACGACTCTTACCCAAGACGAGCTCACGAAGATCAGCCTCCTTCTTCCTCGTCTCTGCCTCGACAACCACCACTCCACCGCCATCACACTTCTGGATGCGGCGCTCCTCACTAATCTTTCACTTCAATCGCTTCCCCTCTCGATTCTTTCCCATTCCCTTGCTTCCCAATCCGATTTCGCCCTCACGATGTCCCTCCTCACCCGTCTCAATCACCATCGGAATGCGCTTCTCTATTCAAGCCCTATTATCACCATGCTTATTTTCTCTTATTGTAAGCAGCGGAAATTTAAGGAGGCCTTGAAGATTTTCCATTGGATGCTAAGACCAGGGTCGCCATGTAAGCCGGATGAGAGGGTTTATAAAACCCTAATCGCGGGACTGTGTAGGAAGGGTATGGTACTTGATGCTTTGAAGATTCTGAAGAACATGATTGACTCGAATTTGGTTCCGGATTACGATCTGAGGAGTTGGGTTTTTAGGTGTTTGCTGAGAGAAGCGATGATCGGCGAAGCAACAGAGTTGAGTGAAACTTTGAATTCCATTGGCGATCGGAATACCAGTGAGCATCTGAAAAAGGTGTCGGAATTGTTGGACGGTATCATCAACAATTGGATTGAATAGAGAAGATCTTCTGGTAAGCCATTTGCTCTCTGTGACTCAATTATGTTATTACTACCTCGAAATTTGATGATATTCAGAATAAACTTGATGCTTGATTCGCATGGTTCTTTCTTGTGTTTTTTAGTTCATTCCAATCTATCAATTATCAATTATCAATTATCAATTAAAGGGCAAGCTTCTAAACCACATCATTCTTCTTGCTTGTCTATCTGCCTGAACCAGTGCATTAGTTTGTGTTGTGACATCTATGATACATTTAACTTAGAAATGTGTCACAACTCAAGTCCCAAGTCCACCGTGACGGTAGGTGTTGTCATCTTTAAACTTTCCATTTTGAGCTTTCCTTCAAGGTTTTTGAAACGCATCTCCTAGGAAGAGGTTTCCACACCCTTATAAAGAATGTTTCGTCCTCACTGGCACACCGCCCGATGTATGTCTGGCTCTGATACCATTTGTAATGACCTAAACCCACCGCTTGCAGATATTTTCTCTTTAGGCTTTTCCTTACGGACTTCCCTTCAAGATTTTTAAAACGTGTCTACTAGGGAGTCTACTACTAAGGAGAGGTTTCCACACCCTCGTAAAACCCCTTGCCAGACATCAAGGGTTGTGCCTCAAAGAGGGTGGGGATTGTGAGATTCCACGTCGGTTAAAAATGAGTCTTACAAGGATACGGAAAACTCTCCTTAGTAGACACGTTTTTAAAACTTATATGGATGCACATCATGGAAAGCTCAAAGCTTTAACAACATATTAAAGGATTGTTCTATGTTTACCCGTCAGCTTTCCCCATATAAACAAGATGCTTAAGCTGATGGGTTTTAGTAAATTTAATATGATGTCTGAGTAAGTTTTTTGTTCGAACATCTATTCTGTCATTGAGCGAAGAAAAGCGTTCTTTAACCTATCAAGTTAAGCTTTTAGATCGTAGTTTCTTTTGTTATATGGCGGGAAGTTAATCGGAGAGTTCAAAATCTTGTACTTTCAGGTTCCTTCGTTGGAGAAGGAAGAGAAATGTTGGTGGTTATTGGTGTCTTCAGTTCACAGGGACAAGAAAGCCATTGACACTTCCTATAGTCTTCAGAAATCTTCAGAGCAGCAGAAGGCTTGAATGAACATCAAGTTCATATCAAATGCTATTAACTCGAAGAAACTGCCATAGAAATTGAGGTCATAATGTAACATAATGCTGTTTTGGGTTTATCTACACAATTTTTTTTTCTCACGAATTTTTCGAGCGGAGTCTACCGCTAGCAGATATTTTGGCCCAGCAGATATTATTTATTTTGTCCATTTTGGCCCATTACGTATCACCGTAAGCCTCATGATTTTAAAACGCGTCTATTAGGGAGAGATTTTCACACCCTTATAATGCTTCGTTCTTCTCTTCAACTAGTGTGAGATCTCACGGTTTAGTGTCATTATCTTGGATTTGAGCATTTTATAAGAAATGTTTCGTTCCTCTCTT

mRNA sequence

ATGAAGACGATAAGGCAACGGCTTCTTCCCCTCCACCGTCGTCCACTTCCACCGCAGCTCGTTCACGATCAAATTCCGGCCATTGGTACTCCATTTTCCTCTTCCTCCTCCTCCTCCGTTTATGATTCCGCAGCCAGTAAAATCAATACGACTCTTACCCAAGACGAGCTCACGAAGATCAGCCTCCTTCTTCCTCGTCTCTGCCTCGACAACCACCACTCCACCGCCATCACACTTCTGGATGCGGCGCTCCTCACTAATCTTTCACTTCAATCGCTTCCCCTCTCGATTCTTTCCCATTCCCTTGCTTCCCAATCCGATTTCGCCCTCACGATGTCCCTCCTCACCCGTCTCAATCACCATCGGAATGCGCTTCTCTATTCAAGCCCTATTATCACCATGCTTATTTTCTCTTATTGTAAGCAGCGGAAATTTAAGGAGGCCTTGAAGATTTTCCATTGGATGCTAAGACCAGGGTCGCCATGTAAGCCGGATGAGAGGGTTTATAAAACCCTAATCGCGGGACTGTGTAGGAAGGGTATGGTACTTGATGCTTTGAAGATTCTGAAGAACATGATTGACTCGAATTTGGTTCCGGATTACGATCTGAGGAGTTGGGTTTTTAGGTGTTTGCTGAGAGAAGCGATGATCGGCGAAGCAACAGAGTTGAGTGAAACTTTGAATTCCATTGGCGATCGGAATACCAGTGAGCATCTGAAAAAGGTTCCTTCGTTGGAGAAGGAAGAGAAATGTTGGTGGTTATTGGTGTCTTCAGTTCACAGGGACAAGAAAGCCATTGACACTTCCTATAGTCTTCAGAAATCTTCAGAGCAGCAGAAGGCTTGAATGAACATCAAGTTCATATCAAATGCTATTAACTCGAAGAAACTGCCATAGAAATTGAGGTCATAATGTAACATAATGCTGTTTTGGGTTTATCTACACAATTTTTTTTTCTCACGAATTTTTCGAGCGGAGTCTACCGCTAGCAGATATTTTGGCCCAGCAGATATTATTTATTTTGTCCATTTTGGCCCATTACGTATCACCGTAAGCCTCATGATTTTAAAACGCGTCTATTAGGGAGAGATTTTCACACCCTTATAATGCTTCGTTCTTCTCTTCAACTAGTGTGAGATCTCACGGTTTAGTGTCATTATCTTGGATTTGAGCATTTTATAAGAAATGTTTCGTTCCTCTCTT

Coding sequence (CDS)

ATGAAGACGATAAGGCAACGGCTTCTTCCCCTCCACCGTCGTCCACTTCCACCGCAGCTCGTTCACGATCAAATTCCGGCCATTGGTACTCCATTTTCCTCTTCCTCCTCCTCCTCCGTTTATGATTCCGCAGCCAGTAAAATCAATACGACTCTTACCCAAGACGAGCTCACGAAGATCAGCCTCCTTCTTCCTCGTCTCTGCCTCGACAACCACCACTCCACCGCCATCACACTTCTGGATGCGGCGCTCCTCACTAATCTTTCACTTCAATCGCTTCCCCTCTCGATTCTTTCCCATTCCCTTGCTTCCCAATCCGATTTCGCCCTCACGATGTCCCTCCTCACCCGTCTCAATCACCATCGGAATGCGCTTCTCTATTCAAGCCCTATTATCACCATGCTTATTTTCTCTTATTGTAAGCAGCGGAAATTTAAGGAGGCCTTGAAGATTTTCCATTGGATGCTAAGACCAGGGTCGCCATGTAAGCCGGATGAGAGGGTTTATAAAACCCTAATCGCGGGACTGTGTAGGAAGGGTATGGTACTTGATGCTTTGAAGATTCTGAAGAACATGATTGACTCGAATTTGGTTCCGGATTACGATCTGAGGAGTTGGGTTTTTAGGTGTTTGCTGAGAGAAGCGATGATCGGCGAAGCAACAGAGTTGAGTGAAACTTTGAATTCCATTGGCGATCGGAATACCAGTGAGCATCTGAAAAAGGTTCCTTCGTTGGAGAAGGAAGAGAAATGTTGGTGGTTATTGGTGTCTTCAGTTCACAGGGACAAGAAAGCCATTGACACTTCCTATAGTCTTCAGAAATCTTCAGAGCAGCAGAAGGCTTGA

Protein sequence

MKTIRQRLLPLHRRPLPPQLVHDQIPAIGTPFSSSSSSSVYDSAASKINTTLTQDELTKISLLLPRLCLDNHHSTAITLLDAALLTNLSLQSLPLSILSHSLASQSDFALTMSLLTRLNHHRNALLYSSPIITMLIFSYCKQRKFKEALKIFHWMLRPGSPCKPDERVYKTLIAGLCRKGMVLDALKILKNMIDSNLVPDYDLRSWVFRCLLREAMIGEATELSETLNSIGDRNTSEHLKKVPSLEKEEKCWWLLVSSVHRDKKAIDTSYSLQKSSEQQKA
Homology
[Close]
BLAST of Cp4.1LG20g02840 vs. ExPASy Swiss-Prot
Match: Q6NQ83 (Pentatricopeptide repeat-containing protein At3g22470, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At3g22470 PE=1 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 1.2e-08
Identity = 50/168 (29.76%), Postives = 79/168 (47.02%), Query Frame = 0 

Query: 56  ELTKISLLLPRLCLDNHHSTAITLLDAALLTNLSLQSLPLSILSHSLASQSDFALTMSLL 115
           +L  +S L+  LCL    S A+ L+D  +        +    + + L    + AL + L 
Sbjct: 174 DLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLF 233

Query: 116 TRLNHHRNALLYSSPIITMLIFSYCKQRKFKEALKIFHWMLRPGSPCKPDERVYKTLIAG 175
            ++   RN +  S    +++I S CK   F +AL +F+ M   G   K D   Y +LI G
Sbjct: 234 RKM-EERN-IKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKG--IKADVVTYSSLIGG 293

Query: 176 LCRKGMVLDALKILKNMIDSNLVPDYDLRSWVFRCLLREAMIGEATEL 224
           LC  G   D  K+L+ MI  N++PD    S +    ++E  + EA EL
Sbjct: 294 LCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKEL 337

[Close]
BLAST of Cp4.1LG20g02840 vs. ExPASy Swiss-Prot
Match: Q8LE47 (Pentatricopeptide repeat-containing protein At1g61870, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PPR336 PE=2 SV=2)

HSP 1 Score: 60.5 bits (145), Expect = 3.6e-08
Identity = 32/89 (35.96%), Postives = 48/89 (53.93%), Query Frame = 0 

Query: 135 LIFSYCKQRKFKEALKIFHWMLRPGSPCKPDERVYKTLIAGLCRKGMVLDALKILKNMID 194
           LI  +C +  F+EA K+F  M+  G  CKPD   Y TLI  LC+ G    AL + K  ++
Sbjct: 298 LIHGFCNEDDFEEAKKLFKIMVNRG--CKPDSECYFTLIYYLCKGGDFETALSLCKESME 357

Query: 195 SNLVPDYDLRSWVFRCLLREAMIGEATEL 224
            N VP + +   +   L +++ + EA EL
Sbjct: 358 KNWVPSFSIMKSLVNGLAKDSKVEEAKEL 384

[Close]
BLAST of Cp4.1LG20g02840 vs. ExPASy Swiss-Prot
Match: Q9FMF6 (Pentatricopeptide repeat-containing protein At5g64320, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At5g64320 PE=2 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 1.4e-07
Identity = 32/89 (35.96%), Postives = 50/89 (56.18%), Query Frame = 0 

Query: 135 LIFSYCKQRKFKEALKIFHWMLRPGSPCKPDERVYKTLIAGLCRKGMVLDALKILKNMID 194
           LI ++CK+ +  EA++IF  M R G  CKPD   + +LI+GLC    +  AL +L++MI 
Sbjct: 465 LISAFCKEHRIPEAVEIFREMPRKG--CKPDVYTFNSLISGLCEVDEIKHALWLLRDMIS 524

Query: 195 SNLVPDYDLRSWVFRCLLREAMIGEATEL 224
             +V +    + +    LR   I EA +L
Sbjct: 525 EGVVANTVTYNTLINAFLRRGEIKEARKL 551

[Close]
BLAST of Cp4.1LG20g02840 vs. ExPASy Swiss-Prot
Match: O49436 (Pentatricopeptide repeat-containing protein At4g20090 OS=Arabidopsis thaliana OX=3702 GN=EMB1025 PE=3 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 3.1e-07
Identity = 46/172 (26.74%), Postives = 81/172 (47.09%), Query Frame = 0 

Query: 63  LLPRLCLDNHHSTAITLLDAALLTNLSLQSLPLSILSHSLASQ---SDFALTMSLLTRLN 122
           L+  LCL      A++LL+  + +      +    L + L  Q   +D    +S +    
Sbjct: 298 LIHGLCLKGKLDKAVSLLERMVSSKCIPNDVTYGTLINGLVKQRRATDAVRLLSSMEERG 357

Query: 123 HHRNALLYSSPIITMLIFSYCKQRKFKEALKIFHWMLRPGSPCKPDERVYKTLIAGLCRK 182
           +H N  +YS     +LI    K+ K +EA+ ++  M   G  CKP+  VY  L+ GLCR+
Sbjct: 358 YHLNQHIYS-----VLISGLFKEGKAEEAMSLWRKMAEKG--CKPNIVVYSVLVDGLCRE 417

Query: 183 GMVLDALKILKNMIDSNLVPDYDLRSWVFRCLLREAMIGEATELSETLNSIG 232
           G   +A +IL  MI S  +P+    S + +   +  +  EA ++ + ++  G
Sbjct: 418 GKPNEAKEILNRMIASGCLPNAYTYSSLMKGFFKTGLCEEAVQVWKEMDKTG 462

[Close]
BLAST of Cp4.1LG20g02840 vs. ExPASy Swiss-Prot
Match: Q9LFF1 (Pentatricopeptide repeat-containing protein At3g53700, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=MEE40 PE=2 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 4.0e-07
Identity = 33/97 (34.02%), Postives = 52/97 (53.61%), Query Frame = 0 

Query: 135 LIFSYCKQRKFKEALKIFHWMLRPGSPCKPDERVYKTLIAGLCRKGMVLDALKILKNMID 194
           L+   CK    K A++I   ML+ G    PD   Y ++I+GLC+ G V +A+++L  MI 
Sbjct: 301 LVNGLCKAGHVKHAIEIMDVMLQEG--YDPDVYTYNSVISGLCKLGEVKEAVEVLDQMIT 360

Query: 195 SNLVPDYDLRSWVFRCLLREAMIGEATELSETLNSIG 232
            +  P+    + +   L +E  + EATEL+  L S G
Sbjct: 361 RDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKG 395

[Close]
BLAST of Cp4.1LG20g02840 vs. NCBI nr
Match: XP_023520260.1 (pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 466 bits (1199), Expect = 2.12e-164
Identity = 243/245 (99.18%), Postives = 243/245 (99.18%), Query Frame = 0 

Query: 1   MKTIRQRLLPLHRRPLPPQLVHDQIPAIGTPFSSSSSSSVYDSAASKINTTLTQDELTKI 60
           MKTIRQRLLPLHRRPLPPQLVHDQIPAIGTPFSSSSSSSVYDSAASKINTTLTQDELTKI
Sbjct: 1   MKTIRQRLLPLHRRPLPPQLVHDQIPAIGTPFSSSSSSSVYDSAASKINTTLTQDELTKI 60

Query: 61  SLLLPRLCLDNHHSTAITLLDAALLTNLSLQSLPLSILSHSLASQSDFALTMSLLTRLNH 120
           SLLLPRLCLDNHHSTAITLLDAALLTNLSLQSLPLSILSHSLASQSDFALTMSLLTRLNH
Sbjct: 61  SLLLPRLCLDNHHSTAITLLDAALLTNLSLQSLPLSILSHSLASQSDFALTMSLLTRLNH 120

Query: 121 HRNALLYSSPIITMLIFSYCKQRKFKEALKIFHWMLRPGSPCKPDERVYKTLIAGLCRKG 180
           HRNALLYSSPIITMLIFSYCKQRKFKEALKIFHWMLRPGSPCKPDERVYKTLIAGLCRKG
Sbjct: 121 HRNALLYSSPIITMLIFSYCKQRKFKEALKIFHWMLRPGSPCKPDERVYKTLIAGLCRKG 180

Query: 181 MVLDALKILKNMIDSNLVPDYDLRSWVFRCLLREAMIGEATELSETLNSIGDRNTSEHLK 240
           MVLDALKILKNMIDSNLVPDYDLRSWVFRCLLREAMIGEATELSETLNSIGDRNTSEHLK
Sbjct: 181 MVLDALKILKNMIDSNLVPDYDLRSWVFRCLLREAMIGEATELSETLNSIGDRNTSEHLK 240

Query: 241 KVPSL 245
           KV  L
Sbjct: 241 KVSEL 245

[Close]
BLAST of Cp4.1LG20g02840 vs. NCBI nr
Match: XP_022923926.1 (pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like [Cucurbita moschata] >XP_022923927.1 pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like [Cucurbita moschata] >XP_022923928.1 pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like [Cucurbita moschata])

HSP 1 Score: 433 bits (1114), Expect = 1.95e-151
Identity = 230/246 (93.50%), Postives = 233/246 (94.72%), Query Frame = 0 

Query: 1   MKTIRQRLLPLHRRPLPPQLVHDQIPAIGTPFSS-SSSSSVYDSAASKINTTLTQDELTK 60
           MKTI QRLLPLHR PLPPQLVHDQIPAIGTPFS  SSSSSVYDSAASKINTTLTQDELTK
Sbjct: 1   MKTITQRLLPLHRLPLPPQLVHDQIPAIGTPFSFFSSSSSVYDSAASKINTTLTQDELTK 60

Query: 61  ISLLLPRLCLDNHHSTAITLLDAALLTNLSLQSLPLSILSHSLASQSDFALTMSLLTRLN 120
           ISLLLPRLC  NHHSTAITLLD ALLTNLSLQSLPLSILSHSLASQSDFALTMSLLTRL 
Sbjct: 61  ISLLLPRLCFYNHHSTAITLLDTALLTNLSLQSLPLSILSHSLASQSDFALTMSLLTRLK 120

Query: 121 HHRNALLYSSPIITMLIFSYCKQRKFKEALKIFHWMLRPGSPCKPDERVYKTLIAGLCRK 180
           HHRNALLYSSPIITMLI SY KQRK KEALKIFHWMLRPGSPCKPDERVYKTLIAGLCRK
Sbjct: 121 HHRNALLYSSPIITMLILSYSKQRKLKEALKIFHWMLRPGSPCKPDERVYKTLIAGLCRK 180

Query: 181 GMVLDALKILKNMIDSNLVPDYDLRSWVFRCLLREAMIGEATELSETLNSIGDRNTSEHL 240
           GMVLDALKILKNMIDSNLVPDYDLRSWVFRCLLREAMIGEATELSETLNSIGDRNTS+HL
Sbjct: 181 GMVLDALKILKNMIDSNLVPDYDLRSWVFRCLLREAMIGEATELSETLNSIGDRNTSDHL 240

Query: 241 KKVPSL 245
           ++V  L
Sbjct: 241 RRVSEL 246

[Close]
BLAST of Cp4.1LG20g02840 vs. NCBI nr
Match: KAG7019769.1 (Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 433 bits (1113), Expect = 2.77e-151
Identity = 229/246 (93.09%), Postives = 234/246 (95.12%), Query Frame = 0 

Query: 1   MKTIRQRLLPLHRRPLPPQLVHDQIPAIGTPFS-SSSSSSVYDSAASKINTTLTQDELTK 60
           MKTI QRLLPLHR PLPPQLVHDQIPAIGTPFS SSSSSSVYDSAASKINTTLTQDELTK
Sbjct: 1   MKTITQRLLPLHRLPLPPQLVHDQIPAIGTPFSFSSSSSSVYDSAASKINTTLTQDELTK 60

Query: 61  ISLLLPRLCLDNHHSTAITLLDAALLTNLSLQSLPLSILSHSLASQSDFALTMSLLTRLN 120
           ISLLLPRLC  NHHSTAITLLD ALLTNLSLQSLPLSILSHSLASQSDFALTMSLLTRL 
Sbjct: 61  ISLLLPRLCFYNHHSTAITLLDTALLTNLSLQSLPLSILSHSLASQSDFALTMSLLTRLK 120

Query: 121 HHRNALLYSSPIITMLIFSYCKQRKFKEALKIFHWMLRPGSPCKPDERVYKTLIAGLCRK 180
           HHRNALLYSSPIITMLI SY +QRK KEALKIFHWMLRPGSPCKPDERVYKTLIAGLCRK
Sbjct: 121 HHRNALLYSSPIITMLILSYSRQRKLKEALKIFHWMLRPGSPCKPDERVYKTLIAGLCRK 180

Query: 181 GMVLDALKILKNMIDSNLVPDYDLRSWVFRCLLREAMIGEATELSETLNSIGDRNTSEHL 240
           GMVLDALKILKNMIDSNLVPDYDLRSWVFRCLLREAMIG+ATELSETLNSIGDRNTS+HL
Sbjct: 181 GMVLDALKILKNMIDSNLVPDYDLRSWVFRCLLREAMIGKATELSETLNSIGDRNTSDHL 240

Query: 241 KKVPSL 245
           ++V  L
Sbjct: 241 RRVSEL 246

[Close]
BLAST of Cp4.1LG20g02840 vs. NCBI nr
Match: KAG6584178.1 (Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 433 bits (1113), Expect = 2.77e-151
Identity = 229/246 (93.09%), Postives = 234/246 (95.12%), Query Frame = 0 

Query: 1   MKTIRQRLLPLHRRPLPPQLVHDQIPAIGTPFSSSSSSS-VYDSAASKINTTLTQDELTK 60
           MKT+RQRLL LHR PLPPQLVHDQIPAIGTPFSSSSSSS VYDSAASKINTTLTQDELTK
Sbjct: 1   MKTVRQRLLHLHRLPLPPQLVHDQIPAIGTPFSSSSSSSSVYDSAASKINTTLTQDELTK 60

Query: 61  ISLLLPRLCLDNHHSTAITLLDAALLTNLSLQSLPLSILSHSLASQSDFALTMSLLTRLN 120
           ISLLLPRLC  NHHSTAITLLD ALLTNLSLQSLPLSILSHSLASQSDFALTMSLLTRL 
Sbjct: 61  ISLLLPRLCFYNHHSTAITLLDTALLTNLSLQSLPLSILSHSLASQSDFALTMSLLTRLK 120

Query: 121 HHRNALLYSSPIITMLIFSYCKQRKFKEALKIFHWMLRPGSPCKPDERVYKTLIAGLCRK 180
           HHRNALLYSSPIITMLI SY +QRK KEALKIFHWMLRPGSPCKPDERVYKTLIAGLCRK
Sbjct: 121 HHRNALLYSSPIITMLILSYSRQRKLKEALKIFHWMLRPGSPCKPDERVYKTLIAGLCRK 180

Query: 181 GMVLDALKILKNMIDSNLVPDYDLRSWVFRCLLREAMIGEATELSETLNSIGDRNTSEHL 240
           GMVLDALKILKNMIDSNLVPDYDLRSWVFRCLLREAMIGEATELSETLNSIGDRNTS+HL
Sbjct: 181 GMVLDALKILKNMIDSNLVPDYDLRSWVFRCLLREAMIGEATELSETLNSIGDRNTSDHL 240

Query: 241 KKVPSL 245
           ++V  L
Sbjct: 241 RRVSEL 246

[Close]
BLAST of Cp4.1LG20g02840 vs. NCBI nr
Match: XP_023000755.1 (pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like [Cucurbita maxima] >XP_023000756.1 pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like [Cucurbita maxima] >XP_023000757.1 pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like [Cucurbita maxima])

HSP 1 Score: 427 bits (1097), Expect = 7.57e-149
Identity = 229/246 (93.09%), Postives = 231/246 (93.90%), Query Frame = 0 

Query: 1   MKTIRQRLLPLHRRPLPPQLVHDQIPAIGTPFSSSSSSS-VYDSAASKINTTLTQDELTK 60
           MKTIRQRLLPL R PLPPQLVHDQIPAIGTPFSSSSSSS VYDSAASKINTTLTQDELTK
Sbjct: 1   MKTIRQRLLPLRRLPLPPQLVHDQIPAIGTPFSSSSSSSSVYDSAASKINTTLTQDELTK 60

Query: 61  ISLLLPRLCLDNHHSTAITLLDAALLTNLSLQSLPLSILSHSLASQSDFALTMSLLTRLN 120
           ISLLLPRLCL NHHSTAITLLD ALLTNLSLQSLPLSILSHSLASQSDFALTMSLLTRL 
Sbjct: 61  ISLLLPRLCLYNHHSTAITLLDTALLTNLSLQSLPLSILSHSLASQSDFALTMSLLTRLK 120

Query: 121 HHRNALLYSSPIITMLIFSYCKQRKFKEALKIFHWMLRPGSPCKPDERVYKTLIAGLCRK 180
           HHRNALLYSSPIITMLIFSY KQRK KEALKIFHWMLRPGSPCKPDE VYKTLIAGLCRK
Sbjct: 121 HHRNALLYSSPIITMLIFSYSKQRKSKEALKIFHWMLRPGSPCKPDEMVYKTLIAGLCRK 180

Query: 181 GMVLDALKILKNMIDSNLVPDYDLRSWVFRCLLREAMIGEATELSETLNSIGDRNTSEHL 240
           GMVLDALKILKNMIDSNLVPDYDLRSWV  CLLREAMIGEATELSETLNSI DRN S+HL
Sbjct: 181 GMVLDALKILKNMIDSNLVPDYDLRSWVCMCLLREAMIGEATELSETLNSIADRNISDHL 240

Query: 241 KKVPSL 245
           +KV  L
Sbjct: 241 RKVSEL 246

[Close]
BLAST of Cp4.1LG20g02840 vs. ExPASy TrEMBL
Match: A0A6J1E820 (pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like OS=Cucurbita moschata OX=3662 GN=LOC111431498 PE=4 SV=1)

HSP 1 Score: 433 bits (1114), Expect = 9.44e-152
Identity = 230/246 (93.50%), Postives = 233/246 (94.72%), Query Frame = 0 

Query: 1   MKTIRQRLLPLHRRPLPPQLVHDQIPAIGTPFSS-SSSSSVYDSAASKINTTLTQDELTK 60
           MKTI QRLLPLHR PLPPQLVHDQIPAIGTPFS  SSSSSVYDSAASKINTTLTQDELTK
Sbjct: 1   MKTITQRLLPLHRLPLPPQLVHDQIPAIGTPFSFFSSSSSVYDSAASKINTTLTQDELTK 60

Query: 61  ISLLLPRLCLDNHHSTAITLLDAALLTNLSLQSLPLSILSHSLASQSDFALTMSLLTRLN 120
           ISLLLPRLC  NHHSTAITLLD ALLTNLSLQSLPLSILSHSLASQSDFALTMSLLTRL 
Sbjct: 61  ISLLLPRLCFYNHHSTAITLLDTALLTNLSLQSLPLSILSHSLASQSDFALTMSLLTRLK 120

Query: 121 HHRNALLYSSPIITMLIFSYCKQRKFKEALKIFHWMLRPGSPCKPDERVYKTLIAGLCRK 180
           HHRNALLYSSPIITMLI SY KQRK KEALKIFHWMLRPGSPCKPDERVYKTLIAGLCRK
Sbjct: 121 HHRNALLYSSPIITMLILSYSKQRKLKEALKIFHWMLRPGSPCKPDERVYKTLIAGLCRK 180

Query: 181 GMVLDALKILKNMIDSNLVPDYDLRSWVFRCLLREAMIGEATELSETLNSIGDRNTSEHL 240
           GMVLDALKILKNMIDSNLVPDYDLRSWVFRCLLREAMIGEATELSETLNSIGDRNTS+HL
Sbjct: 181 GMVLDALKILKNMIDSNLVPDYDLRSWVFRCLLREAMIGEATELSETLNSIGDRNTSDHL 240

Query: 241 KKVPSL 245
           ++V  L
Sbjct: 241 RRVSEL 246

[Close]
BLAST of Cp4.1LG20g02840 vs. ExPASy TrEMBL
Match: A0A6J1KEJ7 (pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like OS=Cucurbita maxima OX=3661 GN=LOC111495112 PE=4 SV=1)

HSP 1 Score: 427 bits (1097), Expect = 3.66e-149
Identity = 229/246 (93.09%), Postives = 231/246 (93.90%), Query Frame = 0 

Query: 1   MKTIRQRLLPLHRRPLPPQLVHDQIPAIGTPFSSSSSSS-VYDSAASKINTTLTQDELTK 60
           MKTIRQRLLPL R PLPPQLVHDQIPAIGTPFSSSSSSS VYDSAASKINTTLTQDELTK
Sbjct: 1   MKTIRQRLLPLRRLPLPPQLVHDQIPAIGTPFSSSSSSSSVYDSAASKINTTLTQDELTK 60

Query: 61  ISLLLPRLCLDNHHSTAITLLDAALLTNLSLQSLPLSILSHSLASQSDFALTMSLLTRLN 120
           ISLLLPRLCL NHHSTAITLLD ALLTNLSLQSLPLSILSHSLASQSDFALTMSLLTRL 
Sbjct: 61  ISLLLPRLCLYNHHSTAITLLDTALLTNLSLQSLPLSILSHSLASQSDFALTMSLLTRLK 120

Query: 121 HHRNALLYSSPIITMLIFSYCKQRKFKEALKIFHWMLRPGSPCKPDERVYKTLIAGLCRK 180
           HHRNALLYSSPIITMLIFSY KQRK KEALKIFHWMLRPGSPCKPDE VYKTLIAGLCRK
Sbjct: 121 HHRNALLYSSPIITMLIFSYSKQRKSKEALKIFHWMLRPGSPCKPDEMVYKTLIAGLCRK 180

Query: 181 GMVLDALKILKNMIDSNLVPDYDLRSWVFRCLLREAMIGEATELSETLNSIGDRNTSEHL 240
           GMVLDALKILKNMIDSNLVPDYDLRSWV  CLLREAMIGEATELSETLNSI DRN S+HL
Sbjct: 181 GMVLDALKILKNMIDSNLVPDYDLRSWVCMCLLREAMIGEATELSETLNSIADRNISDHL 240

Query: 241 KKVPSL 245
           +KV  L
Sbjct: 241 RKVSEL 246

[Close]
BLAST of Cp4.1LG20g02840 vs. ExPASy TrEMBL
Match: A0A6J1C6B0 (pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like OS=Momordica charantia OX=3673 GN=LOC111008811 PE=4 SV=1)

HSP 1 Score: 346 bits (887), Expect = 1.01e-116
Identity = 194/264 (73.48%), Postives = 216/264 (81.82%), Query Frame = 0 

Query: 1   MKTIRQRLLPLHRRPLPPQLVHDQIPAIGTPFSSSSSSSVYDSA--ASKINTTLTQDELT 60
           MKTIRQRL PL R  LPPQ + +QIPAI +PF SSSS S  +SA  ASK NTTLTQDELT
Sbjct: 1   MKTIRQRL-PLQRLQLPPQFIQNQIPAIDSPFYSSSSISDSESASVASKTNTTLTQDELT 60

Query: 61  KISLLLPRLCLDNHHSTAITLLDAALLTNLSLQSLPLSILSHSLASQSDFALTMSLLTRL 120
           KI+LLLPRLCL +HHSTAITLLDAALLTN SLQSLPLSIL+HSLASQSDF   MSLLTRL
Sbjct: 61  KINLLLPRLCLHSHHSTAITLLDAALLTNPSLQSLPLSILAHSLASQSDFTHAMSLLTRL 120

Query: 121 NHHRNALLYSSPIITMLIFSYCKQRKFKEALKIFHWMLRPGSPCKPDERVYKTLIAGLCR 180
            HHRNA LYSSPIITMLI SYCK+RKF+EALKIFHWM RPGSPC PDE+VY TLIAGLCR
Sbjct: 121 KHHRNANLYSSPIITMLIHSYCKRRKFREALKIFHWMGRPGSPCNPDEKVYATLIAGLCR 180

Query: 181 KGMVLDALKILKNMIDSNLVPDYDLRSWVFRCLLREAMIGEATELSETLNSIGDRNTSEH 240
            GMVLDALK+L+NMI SNLVPD +LR+WVFR LLREAMIGEA E +E L+ + D+N S H
Sbjct: 181 HGMVLDALKVLRNMIGSNLVPDSNLRNWVFRSLLREAMIGEAMEFNEILDRVEDQNLSNH 240

Query: 241 LKK-VPSLEKEEKCWWLLVSSVHR 261
           L+K   S ++     + L SSV R
Sbjct: 241 LRKGEESSDQSSNATYSLHSSVLR 263

[Close]
BLAST of Cp4.1LG20g02840 vs. ExPASy TrEMBL
Match: A0A5A7UP05 (Protein PLASTID TRANSCRIPTIONALLY ACTIVE 14 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold80G002100 PE=4 SV=1)

HSP 1 Score: 350 bits (897), Expect = 2.67e-112
Identity = 190/253 (75.10%), Postives = 213/253 (84.19%), Query Frame = 0 

Query: 1   MKTIRQRLLPLHRRPLPPQLVHDQIPAIGTPFSSSSS---SSVYDSAASKINTTLTQDEL 60
           MK IRQ+LL L R PL P+L+  QIP I +PFSSSSS    S   S A++ NTTLT DEL
Sbjct: 1   MKRIRQQLLTLQRLPLSPELLRFQIPPILSPFSSSSSFISGSPSASIATEPNTTLTHDEL 60

Query: 61  TKISLLLPRLCLDNHHSTAITLLDAALLTNLSLQSLPLSILSHSLASQSDFALTMSLLTR 120
           T+I+LLLPRLCL NH STAITLL A LLTN SLQSL LS+LSHSLASQSDFALTMSLLTR
Sbjct: 61  TRINLLLPRLCLYNHLSTAITLLHATLLTNPSLQSLSLSVLSHSLASQSDFALTMSLLTR 120

Query: 121 LNHHRNALLYSSPIITMLIFSYCKQRKFKEALKIFHWMLRPGSPCKPDERVYKTLIAGLC 180
           L HH NALLYS+PI+TMLI SYCK+RK KEALKIFHWMLRPGSPCKP+ERVYKTLIAGL 
Sbjct: 121 LKHHPNALLYSTPIVTMLISSYCKRRKSKEALKIFHWMLRPGSPCKPEERVYKTLIAGLY 180

Query: 181 RKGMVLDALKILKNMIDSNLVPDYDLRSWVFRCLLREAMIGEATELSETLNSIGDRNTSE 240
           RKGM  DALK+L+NMIDSNLVPD DLR+WVFRCLLREAMI EA E +ET N +GD++T +
Sbjct: 181 RKGMTFDALKVLRNMIDSNLVPDCDLRNWVFRCLLREAMIPEAMEFNETFNFVGDQDTID 240

Query: 241 HLKKVPSLEKEEK 250
           HL++VP LEKEEK
Sbjct: 241 HLRRVPFLEKEEK 253

[Close]
BLAST of Cp4.1LG20g02840 vs. ExPASy TrEMBL
Match: A0A0A0LRQ9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G051900 PE=4 SV=1)

HSP 1 Score: 333 bits (854), Expect = 3.70e-112
Identity = 181/248 (72.98%), Postives = 206/248 (83.06%), Query Frame = 0 

Query: 1   MKTIRQRLLPLHRRPLPPQLVHDQIPAIGTPFSSSSS---SSVYDSAASKINTTLTQDEL 60
           MK IRQ+LL L R PL P+L+  QIPAI +PFSSSSS    S   S A+K NTTLT DEL
Sbjct: 1   MKRIRQQLLTLQRLPLSPELLRFQIPAILSPFSSSSSFISDSPSASIATKPNTTLTHDEL 60

Query: 61  TKISLLLPRLCLDNHHSTAITLLDAALLTNLSLQSLPLSILSHSLASQSDFALTMSLLTR 120
           T+I+LLLPRLCL NH STAI+LL A LLTN SL SL LS+LSHSLASQSDFALTMSLLTR
Sbjct: 61  TRINLLLPRLCLHNHLSTAISLLHATLLTNPSLHSLSLSVLSHSLASQSDFALTMSLLTR 120

Query: 121 LNHHRNALLYSSPIITMLIFSYCKQRKFKEALKIFHWMLRPGSPCKPDERVYKTLIAGLC 180
           L HH NALLYS+PI+TMLI SYCK+RK KEALK+FHWMLRPGSPCKP+ERVYKTLIAGL 
Sbjct: 121 LKHHPNALLYSTPIVTMLISSYCKRRKSKEALKLFHWMLRPGSPCKPEERVYKTLIAGLY 180

Query: 181 RKGMVLDALKILKNMIDSNLVPDYDLRSWVFRCLLREAMIGEATELSETLNSIGDRNTSE 240
           RKGM  DALK+L+NMIDSNLVPD DLR+WVFR LL+EAMI EA E ++ LN +GD+NT +
Sbjct: 181 RKGMTFDALKVLRNMIDSNLVPDCDLRNWVFRSLLKEAMIPEAMEFNDALNFVGDQNTID 240

Query: 241 HLKKVPSL 245
           HL++V  L
Sbjct: 241 HLRRVSEL 248

[Close]
BLAST of Cp4.1LG20g02840 vs. TAIR 10
Match: AT3G22470.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 62.0 bits (149), Expect = 8.8e-10
Identity = 50/168 (29.76%), Postives = 79/168 (47.02%), Query Frame = 0 

Query: 56  ELTKISLLLPRLCLDNHHSTAITLLDAALLTNLSLQSLPLSILSHSLASQSDFALTMSLL 115
           +L  +S L+  LCL    S A+ L+D  +        +    + + L    + AL + L 
Sbjct: 174 DLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLF 233

Query: 116 TRLNHHRNALLYSSPIITMLIFSYCKQRKFKEALKIFHWMLRPGSPCKPDERVYKTLIAG 175
            ++   RN +  S    +++I S CK   F +AL +F+ M   G   K D   Y +LI G
Sbjct: 234 RKM-EERN-IKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKG--IKADVVTYSSLIGG 293

Query: 176 LCRKGMVLDALKILKNMIDSNLVPDYDLRSWVFRCLLREAMIGEATEL 224
           LC  G   D  K+L+ MI  N++PD    S +    ++E  + EA EL
Sbjct: 294 LCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKEL 337

[Close]
BLAST of Cp4.1LG20g02840 vs. TAIR 10
Match: AT1G61870.1 (pentatricopeptide repeat 336 )

HSP 1 Score: 60.5 bits (145), Expect = 2.6e-09
Identity = 32/89 (35.96%), Postives = 48/89 (53.93%), Query Frame = 0 

Query: 135 LIFSYCKQRKFKEALKIFHWMLRPGSPCKPDERVYKTLIAGLCRKGMVLDALKILKNMID 194
           LI  +C +  F+EA K+F  M+  G  CKPD   Y TLI  LC+ G    AL + K  ++
Sbjct: 298 LIHGFCNEDDFEEAKKLFKIMVNRG--CKPDSECYFTLIYYLCKGGDFETALSLCKESME 357

Query: 195 SNLVPDYDLRSWVFRCLLREAMIGEATEL 224
            N VP + +   +   L +++ + EA EL
Sbjct: 358 KNWVPSFSIMKSLVNGLAKDSKVEEAKEL 384

[Close]
BLAST of Cp4.1LG20g02840 vs. TAIR 10
Match: AT5G64320.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 58.5 bits (140), Expect = 9.7e-09
Identity = 32/89 (35.96%), Postives = 50/89 (56.18%), Query Frame = 0 

Query: 135 LIFSYCKQRKFKEALKIFHWMLRPGSPCKPDERVYKTLIAGLCRKGMVLDALKILKNMID 194
           LI ++CK+ +  EA++IF  M R G  CKPD   + +LI+GLC    +  AL +L++MI 
Sbjct: 465 LISAFCKEHRIPEAVEIFREMPRKG--CKPDVYTFNSLISGLCEVDEIKHALWLLRDMIS 524

Query: 195 SNLVPDYDLRSWVFRCLLREAMIGEATEL 224
             +V +    + +    LR   I EA +L
Sbjct: 525 EGVVANTVTYNTLINAFLRRGEIKEARKL 551

[Close]
BLAST of Cp4.1LG20g02840 vs. TAIR 10
Match: AT4G20090.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 57.4 bits (137), Expect = 2.2e-08
Identity = 46/172 (26.74%), Postives = 81/172 (47.09%), Query Frame = 0 

Query: 63  LLPRLCLDNHHSTAITLLDAALLTNLSLQSLPLSILSHSLASQ---SDFALTMSLLTRLN 122
           L+  LCL      A++LL+  + +      +    L + L  Q   +D    +S +    
Sbjct: 298 LIHGLCLKGKLDKAVSLLERMVSSKCIPNDVTYGTLINGLVKQRRATDAVRLLSSMEERG 357

Query: 123 HHRNALLYSSPIITMLIFSYCKQRKFKEALKIFHWMLRPGSPCKPDERVYKTLIAGLCRK 182
           +H N  +YS     +LI    K+ K +EA+ ++  M   G  CKP+  VY  L+ GLCR+
Sbjct: 358 YHLNQHIYS-----VLISGLFKEGKAEEAMSLWRKMAEKG--CKPNIVVYSVLVDGLCRE 417

Query: 183 GMVLDALKILKNMIDSNLVPDYDLRSWVFRCLLREAMIGEATELSETLNSIG 232
           G   +A +IL  MI S  +P+    S + +   +  +  EA ++ + ++  G
Sbjct: 418 GKPNEAKEILNRMIASGCLPNAYTYSSLMKGFFKTGLCEEAVQVWKEMDKTG 462

[Close]
BLAST of Cp4.1LG20g02840 vs. TAIR 10
Match: AT3G53700.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 57.0 bits (136), Expect = 2.8e-08
Identity = 33/97 (34.02%), Postives = 52/97 (53.61%), Query Frame = 0 

Query: 135 LIFSYCKQRKFKEALKIFHWMLRPGSPCKPDERVYKTLIAGLCRKGMVLDALKILKNMID 194
           L+   CK    K A++I   ML+ G    PD   Y ++I+GLC+ G V +A+++L  MI 
Sbjct: 301 LVNGLCKAGHVKHAIEIMDVMLQEG--YDPDVYTYNSVISGLCKLGEVKEAVEVLDQMIT 360

Query: 195 SNLVPDYDLRSWVFRCLLREAMIGEATELSETLNSIG 232
            +  P+    + +   L +E  + EATEL+  L S G
Sbjct: 361 RDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKG 395

The following BLAST results are available for this feature:
BLAST of Cp4.1LG20g02840 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q6NQ831.2e-0829.76Pentatricopeptide repeat-containing protein At3g22470, mitochondrial OS=Arabidop... [more]
Q8LE473.6e-0835.96Pentatricopeptide repeat-containing protein At1g61870, mitochondrial OS=Arabidop... [more]
Q9FMF61.4e-0735.96Pentatricopeptide repeat-containing protein At5g64320, mitochondrial OS=Arabidop... [more]
O494363.1e-0726.74Pentatricopeptide repeat-containing protein At4g20090 OS=Arabidopsis thaliana OX... [more]
Q9LFF14.0e-0734.02Pentatricopeptide repeat-containing protein At3g53700, chloroplastic OS=Arabidop... [more]
BLAST of Cp4.1LG20g02840 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_023520260.12.12e-16499.18pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like [Cucur... [more]
XP_022923926.11.95e-15193.50pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like [Cucur... [more]
KAG7019769.12.77e-15193.09Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma sub... [more]
KAG6584178.12.77e-15193.09Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita a... [more]
XP_023000755.17.57e-14993.09pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like [Cucur... [more]
BLAST of Cp4.1LG20g02840 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1E8209.44e-15293.50pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like OS=Cuc... [more]
A0A6J1KEJ73.66e-14993.09pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like OS=Cuc... [more]
A0A6J1C6B01.01e-11673.48pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like OS=Mom... [more]
A0A5A7UP052.67e-11275.10Protein PLASTID TRANSCRIPTIONALLY ACTIVE 14 isoform X2 OS=Cucumis melo var. maku... [more]
A0A0A0LRQ93.70e-11272.98Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G051900 PE=4 SV=1[more]
BLAST of Cp4.1LG20g02840 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G22470.18.8e-1029.76Pentatricopeptide repeat (PPR) superfamily protein [more]
AT1G61870.12.6e-0935.96pentatricopeptide repeat 336 [more]
AT5G64320.19.7e-0935.96Pentatricopeptide repeat (PPR) superfamily protein [more]
AT4G20090.12.2e-0826.74Pentatricopeptide repeat (PPR) superfamily protein [more]
AT3G53700.12.8e-0834.02Pentatricopeptide repeat (PPR) superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 133..153
e-value: 0.0012
score: 16.8
coord: 168..200
e-value: 1.2E-7
score: 29.5
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 133..153
e-value: 0.0095
score: 16.1
IPR002885Pentatricopeptide repeatPFAMPF12854PPR_1coord: 162..192
e-value: 2.5E-9
score: 36.7
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 128..162
score: 8.889672
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 165..199
score: 11.586152
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 57..281
e-value: 1.2E-20
score: 76.2
NoneNo IPR availablePANTHERPTHR47932ATPASE EXPRESSION PROTEIN 3coord: 163..242
NoneNo IPR availablePANTHERPTHR47932:SF1SUBFAMILY NOT NAMEDcoord: 163..242

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG20g02840.1Cp4.1LG20g02840.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding